pre-miRNA Information
pre-miRNA hsa-mir-7161   
Genomic Coordinates chr6: 158609707 - 158609790
Description Homo sapiens miR-7161 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-7161-5p
Sequence 1| UAAAGACUGUAGAGGCAACUGGU |23
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1198027002 1 dbSNP
rs530077902 10 dbSNP
rs1446817450 13 dbSNP
rs774892048 14 dbSNP
rs1438482648 16 dbSNP
rs1167166990 19 dbSNP
rs760372681 19 dbSNP
Putative Targets

Gene Information
Gene Symbol EPB41L3   
Synonyms 4.1B, DAL-1, DAL1
Description erythrocyte membrane protein band 4.1 like 3
Transcript NM_012307   
Expression
Putative miRNA Targets on EPB41L3
3'UTR of EPB41L3
(miRNA target sites are highlighted)
>EPB41L3|NM_012307|3'UTR
   1 CCAGAGGAATAACTTAGCTTGCACATGAATGCAGTCATGCAAACCGTTAGGAAAACCAGAGCCTATATGGAGTTCCCTCT
  81 TCTAACCCAACTGACTTGTATCTGTCCGTGGAAAATTTCAGTCCAGAAGAATTGACCTTGACCATTAATAAAGACACTGG
 161 CAGAGAGATCTTCCCATAATAAAGCAATCTGATTCAGCATCACTAAACCGATAATGCATGAAGCAACGATAAAATTACAA
 241 AAGAGCAGCATTTTTAATTTTCACAAAATGTCTCAGTTTTCAGCTATACCTGCACGTTCATAACCAACAATATAAACCGT
 321 GGTCTCATGTAACACATAAACAATTCATGCCTTTCATAGTTTATTATTATTAAAGTCTAAACAAAATTGCAATTTCTTAG
 401 GTAACCTTATATTTACAATAAATGAAGATTACCCTCAAATGCTAGAAGCTGTCTAGGTCCGTCCGGTGTGTCAGATTTTC
 481 CTCAGATTAGATGTGCCAATAACCAAGTTTATTCAGTAAACAACTTGTACTTGTTTCATCTGGTTTTATTACTCTCACCC
 561 ATAAACAGTAATGACTCTCTGACCCTCTGGAAATATGTAATGCTTCCAATCTTGCTTTGTGTATCTCATTTAATTTGTTA
 641 TAAGGTAGTACTGATTTTAGCATATTAATGCGATTTCTTCCTTGTTGTTTGCTTTGGTCTGTGTTCAATCCAGAGAGCTT
 721 AAATTGTCATTATTTTGGGAAGAAAACCTGTATTTTTGTTAGTTTACAATATTATGAAATTTCACTTCAGGAGAAACTGC
 801 TGGGCTTCCTGTGGCTTTGTTTTCTTAGTTACTTTTTCCGTGCCGTGTATTTTTTAATTGATTTTTCTTCTTTTACTTGA
 881 AAAGAAAGTGTTTTATTTTCAAATCTGGTCCATATTTACATTCTAGTTCAGAGCCAAGCCTTAAACTGTACAGAATTTCC
 961 ACTGTAATTAAAACTATTTAGTGTTAGTTATAAATAGCCTTCAAAAAGAGAGATTCTCCATTACACGATCACCTGCATCA
1041 CAGCCCATGGTGAATGTATGTTTCTGCATAGCGAAATAAAAATGGCAAATGCACTGAAAGCTCT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uggucaACGGAGA-UGUCAGAAAu 5'
                |||||:| |:|||:| | 
Target 5' aattcaTGCCTTTCATAGTTTATt 3'
342 - 365 121.00 -12.32
2
miRNA  3' ugguCAACGGA-GAUGUCAGAAAu 5'
              ||||::| || ::|||| | 
Target 5' ccttGTTGTTTGCTTTGGTCTGTg 3'
680 - 703 119.00 -12.30
3
miRNA  3' uggucaACGGAGAUGUCAGAAau 5'
                ||:||   ||||:||  
Target 5' acaaaaTGTCT---CAGTTTTca 3'
263 - 282 118.00 -8.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30464866 2 COSMIC
COSN26975114 6 COSMIC
COSN25758550 8 COSMIC
COSN8604638 31 COSMIC
COSN20060462 58 COSMIC
COSN28701918 90 COSMIC
COSN15300571 509 COSMIC
COSN30361564 519 COSMIC
COSN5429551 533 COSMIC
COSN4774389 606 COSMIC
COSN9338641 732 COSMIC
COSN26339470 741 COSMIC
COSN20774574 777 COSMIC
COSN9338638 867 COSMIC
COSN20698268 887 COSMIC
COSN1748771 915 COSMIC
COSN28868536 1129 COSMIC
COSM7314817 1194 COSMIC
COSM8522899 1195 COSMIC
COSM4964402 1196 COSMIC
COSM7314824 1201 COSMIC
COSN22769764 1261 COSMIC
COSN23739600 1291 COSMIC
COSN26766676 1347 COSMIC
COSN8604637 1391 COSMIC
COSN30166368 1408 COSMIC
COSN16564012 1494 COSMIC
COSN20093400 1520 COSMIC
COSN29345021 1557 COSMIC
COSN31546500 1575 COSMIC
COSN19469789 1659 COSMIC
COSN31578520 1664 COSMIC
COSN30170924 1704 COSMIC
COSN31520068 1869 COSMIC
COSN25712165 1901 COSMIC
COSN31530513 1954 COSMIC
COSN1748767 1982 COSMIC
COSN24306416 2076 COSMIC
COSN26601023 2081 COSMIC
COSN30176547 2113 COSMIC
COSN31538952 2133 COSMIC
COSN31528596 2151 COSMIC
COSN15036901 2190 COSMIC
COSN31566917 2214 COSMIC
COSN31662844 2225 COSMIC
COSN30175062 2290 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs199831654 3 dbSNP
rs746462713 6 dbSNP
rs1182357224 7 dbSNP
rs373966644 13 dbSNP
rs763335878 15 dbSNP
rs775413787 16 dbSNP
rs1380716189 21 dbSNP
rs1451924448 21 dbSNP
rs566732815 22 dbSNP
rs1211715111 30 dbSNP
rs1334134748 32 dbSNP
rs776396188 33 dbSNP
rs1168099617 39 dbSNP
rs770926856 46 dbSNP
rs369448100 48 dbSNP
rs1429712018 50 dbSNP
rs1353375369 55 dbSNP
rs1213923791 61 dbSNP
rs1257908260 67 dbSNP
rs1234047496 69 dbSNP
rs1199923470 70 dbSNP
rs1242503211 79 dbSNP
rs1442740843 89 dbSNP
rs1180383661 90 dbSNP
rs1380701780 95 dbSNP
rs146579887 97 dbSNP
rs533838702 101 dbSNP
rs1013287689 104 dbSNP
rs1335454191 122 dbSNP
rs894894699 125 dbSNP
rs1403214091 127 dbSNP
rs1449678210 149 dbSNP
rs1304973068 155 dbSNP
rs1393015542 166 dbSNP
rs944733516 175 dbSNP
rs1054763706 190 dbSNP
rs1303747210 193 dbSNP
rs1312966496 194 dbSNP
rs1232761500 200 dbSNP
rs370828892 205 dbSNP
rs1335814294 206 dbSNP
rs903666695 209 dbSNP
rs1042240067 212 dbSNP
rs1200461759 217 dbSNP
rs1238710513 222 dbSNP
rs779624374 224 dbSNP
rs376217551 225 dbSNP
rs968326583 230 dbSNP
rs1433440701 239 dbSNP
rs1175203101 241 dbSNP
rs1426604789 243 dbSNP
rs1466669178 249 dbSNP
rs1022543736 250 dbSNP
rs1354446668 252 dbSNP
rs1407842019 253 dbSNP
rs991024964 254 dbSNP
rs368029542 255 dbSNP
rs533980973 255 dbSNP
rs1034787590 257 dbSNP
rs1223151614 264 dbSNP
rs1281541254 269 dbSNP
rs977147028 275 dbSNP
rs943982460 276 dbSNP
rs1219313069 281 dbSNP
rs548510490 286 dbSNP
rs1258689455 288 dbSNP
rs1003669141 289 dbSNP
rs1248262560 293 dbSNP
rs1488651148 294 dbSNP
rs1198240877 296 dbSNP
rs1266320396 298 dbSNP
rs911236799 308 dbSNP
rs985514722 312 dbSNP
rs186412485 314 dbSNP
rs757983922 317 dbSNP
rs569092585 319 dbSNP
rs374552229 323 dbSNP
rs1027549633 336 dbSNP
rs1015251499 340 dbSNP
rs1167460341 347 dbSNP
rs1350842603 366 dbSNP
rs1404717473 370 dbSNP
rs532266486 373 dbSNP
rs1342587822 381 dbSNP
rs1400733194 381 dbSNP
rs182590883 382 dbSNP
rs1359894136 388 dbSNP
rs1212749035 409 dbSNP
rs1291852292 414 dbSNP
rs888392714 415 dbSNP
rs1221437667 419 dbSNP
rs1289203848 421 dbSNP
rs1489086963 433 dbSNP
rs1183350876 440 dbSNP
rs1460311605 448 dbSNP
rs1265387791 454 dbSNP
rs961922856 456 dbSNP
rs1350255814 458 dbSNP
rs1025265567 459 dbSNP
rs1162023657 478 dbSNP
rs1241335853 485 dbSNP
rs4453598 491 dbSNP
rs1317826225 499 dbSNP
rs36075398 499 dbSNP
rs1324766447 503 dbSNP
rs900969686 508 dbSNP
rs1285942105 509 dbSNP
rs1447871067 512 dbSNP
rs1383404796 518 dbSNP
rs894780040 520 dbSNP
rs1450363935 527 dbSNP
rs1312678892 533 dbSNP
rs1355520013 538 dbSNP
rs1205361835 543 dbSNP
rs1033318149 544 dbSNP
rs529642986 549 dbSNP
rs903623524 552 dbSNP
rs1334599045 555 dbSNP
rs561206600 566 dbSNP
rs1211594937 567 dbSNP
rs1238598826 569 dbSNP
rs1381268199 571 dbSNP
rs1382380469 574 dbSNP
rs79669098 576 dbSNP
rs1440628779 580 dbSNP
rs924016158 583 dbSNP
rs1383052657 586 dbSNP
rs1042443377 589 dbSNP
rs946684198 591 dbSNP
rs945260556 598 dbSNP
rs1381464145 604 dbSNP
rs4441366 605 dbSNP
rs1334536638 606 dbSNP
rs754222961 609 dbSNP
rs1040259808 619 dbSNP
rs1378928764 621 dbSNP
rs943281952 633 dbSNP
rs78857551 636 dbSNP
rs541500074 637 dbSNP
rs75237465 637 dbSNP
rs1348064809 644 dbSNP
rs985483377 649 dbSNP
rs931372552 655 dbSNP
rs920058895 664 dbSNP
rs1015284076 665 dbSNP
rs1370498996 668 dbSNP
rs1416033672 669 dbSNP
rs1181502472 677 dbSNP
rs1005193390 687 dbSNP
rs952353032 688 dbSNP
rs1173321912 698 dbSNP
rs973309720 707 dbSNP
rs1334685887 709 dbSNP
rs1402342429 716 dbSNP
rs997129622 717 dbSNP
rs901088544 721 dbSNP
rs1354416107 722 dbSNP
rs1333719309 735 dbSNP
rs961527683 736 dbSNP
rs1291147592 739 dbSNP
rs1438186241 746 dbSNP
rs746470290 750 dbSNP
rs918086031 751 dbSNP
rs1041312043 763 dbSNP
rs559135191 764 dbSNP
rs1361539065 767 dbSNP
rs1284535201 769 dbSNP
rs998677481 772 dbSNP
rs992341255 777 dbSNP
rs761173120 778 dbSNP
rs1042471320 794 dbSNP
rs1268435877 799 dbSNP
rs1479526483 803 dbSNP
rs370960160 809 dbSNP
rs1424377054 812 dbSNP
rs1462455139 814 dbSNP
rs189913051 815 dbSNP
rs1300773943 816 dbSNP
rs767691722 818 dbSNP
rs74630381 819 dbSNP
rs1303440441 824 dbSNP
rs1344449486 828 dbSNP
rs536604132 840 dbSNP
rs567677819 842 dbSNP
rs1326448694 846 dbSNP
rs1475330415 852 dbSNP
rs1371704514 855 dbSNP
rs1227352554 857 dbSNP
rs1020739441 865 dbSNP
rs1358980823 870 dbSNP
rs1223664717 877 dbSNP
rs1488751509 887 dbSNP
rs1268217414 888 dbSNP
rs1220400141 898 dbSNP
rs1009741171 904 dbSNP
rs901649513 910 dbSNP
rs1453227386 911 dbSNP
rs1040252960 915 dbSNP
rs1427925269 918 dbSNP
rs35220402 918 dbSNP
rs1192462968 919 dbSNP
rs759651542 920 dbSNP
rs928228906 928 dbSNP
rs982275235 932 dbSNP
rs1007466432 933 dbSNP
rs1364685970 934 dbSNP
rs1422381803 936 dbSNP
rs1290583955 941 dbSNP
rs1213772827 943 dbSNP
rs1337129610 946 dbSNP
rs1385136258 952 dbSNP
rs1271731468 959 dbSNP
rs1294124487 966 dbSNP
rs4441367 976 dbSNP
rs1049750754 977 dbSNP
rs931342877 978 dbSNP
rs919925276 979 dbSNP
rs1219077844 987 dbSNP
rs1261523201 990 dbSNP
rs1485617256 991 dbSNP
rs952383842 991 dbSNP
rs1259619081 993 dbSNP
rs1446400100 994 dbSNP
rs1028445192 995 dbSNP
rs4258718 996 dbSNP
rs940112283 998 dbSNP
rs1160913447 1003 dbSNP
rs80271260 1009 dbSNP
rs548041273 1012 dbSNP
rs1019508009 1013 dbSNP
rs998703751 1021 dbSNP
rs1403659943 1028 dbSNP
rs76961894 1029 dbSNP
rs1336574474 1033 dbSNP
rs566514872 1035 dbSNP
rs926909071 1044 dbSNP
rs1381127186 1046 dbSNP
rs1308039346 1063 dbSNP
rs761654994 1065 dbSNP
rs1324707225 1070 dbSNP
rs979062652 1072 dbSNP
rs1021060612 1075 dbSNP
rs967698627 1076 dbSNP
rs72865100 1077 dbSNP
rs1173311511 1080 dbSNP
rs1458835508 1088 dbSNP
rs1242443006 1091 dbSNP
rs1459854505 1102 dbSNP
rs1009297574 1105 dbSNP
rs529608821 1106 dbSNP
rs1055569887 1108 dbSNP
rs1156421763 1114 dbSNP
rs966213455 1115 dbSNP
rs747010676 1125 dbSNP
rs1404510119 1136 dbSNP
rs1007433614 1140 dbSNP
rs1299126258 1144 dbSNP
rs562338246 1147 dbSNP
rs758263995 1156 dbSNP
rs1048969423 1157 dbSNP
rs1046602506 1160 dbSNP
rs1333160798 1163 dbSNP
rs560573652 1166 dbSNP
rs1324437390 1172 dbSNP
rs777377887 1176 dbSNP
rs1440803367 1180 dbSNP
rs1389934177 1181 dbSNP
rs1162018645 1182 dbSNP
rs550841273 1192 dbSNP
rs908677203 1199 dbSNP
rs1479413456 1205 dbSNP
rs747853054 1214 dbSNP
rs984250706 1214 dbSNP
rs898466248 1222 dbSNP
rs1037457657 1228 dbSNP
rs779418719 1229 dbSNP
rs1248223402 1232 dbSNP
rs556529145 1238 dbSNP
rs1056547298 1239 dbSNP
rs1248510644 1241 dbSNP
rs1210542755 1243 dbSNP
rs756401397 1244 dbSNP
rs1019965722 1254 dbSNP
rs750831541 1260 dbSNP
rs1354316325 1263 dbSNP
rs979626814 1265 dbSNP
rs868323737 1273 dbSNP
rs1021509318 1274 dbSNP
rs745480514 1275 dbSNP
rs1220206161 1286 dbSNP
rs199863531 1288 dbSNP
rs1364099966 1290 dbSNP
rs1216262920 1291 dbSNP
rs531145541 1296 dbSNP
rs965816612 1304 dbSNP
rs893912475 1305 dbSNP
rs778578187 1306 dbSNP
rs1333757311 1309 dbSNP
rs1293542679 1312 dbSNP
rs549937768 1318 dbSNP
rs1490420555 1319 dbSNP
rs1221210286 1320 dbSNP
rs1266164301 1327 dbSNP
rs1033750927 1330 dbSNP
rs1466517905 1337 dbSNP
rs1405623115 1338 dbSNP
rs1002634524 1341 dbSNP
rs1419401734 1345 dbSNP
rs1416397537 1348 dbSNP
rs565329171 1371 dbSNP
rs1427155017 1374 dbSNP
rs906500939 1388 dbSNP
rs1366535739 1393 dbSNP
rs1424279695 1399 dbSNP
rs545632628 1405 dbSNP
rs985881206 1407 dbSNP
rs573363198 1408 dbSNP
rs559761179 1416 dbSNP
rs953158581 1421 dbSNP
rs1176723088 1423 dbSNP
rs536857568 1425 dbSNP
rs1468509230 1426 dbSNP
rs1316923356 1427 dbSNP
rs543161492 1428 dbSNP
rs940315972 1431 dbSNP
rs11548489 1433 dbSNP
rs574058998 1436 dbSNP
rs557424113 1437 dbSNP
rs1289131496 1445 dbSNP
rs1460655308 1446 dbSNP
rs1015582136 1451 dbSNP
rs1261038430 1453 dbSNP
rs1004653731 1457 dbSNP
rs1048571491 1462 dbSNP
rs567479957 1463 dbSNP
rs1386254452 1469 dbSNP
rs931478980 1472 dbSNP
rs921030237 1484 dbSNP
rs1140830 1492 dbSNP
rs975158403 1493 dbSNP
rs1317758763 1494 dbSNP
rs943713382 1496 dbSNP
rs1432821838 1498 dbSNP
rs1338542845 1502 dbSNP
rs896570836 1504 dbSNP
rs977084018 1516 dbSNP
rs967323844 1517 dbSNP
rs373731702 1518 dbSNP
rs576331151 1520 dbSNP
rs753718566 1537 dbSNP
rs938103949 1541 dbSNP
rs990413865 1544 dbSNP
rs1382424905 1545 dbSNP
rs958543023 1547 dbSNP
rs1206198439 1555 dbSNP
rs905348429 1563 dbSNP
rs1461186214 1564 dbSNP
rs1044309560 1568 dbSNP
rs1450421528 1570 dbSNP
rs1182098434 1571 dbSNP
rs1034187973 1572 dbSNP
rs1470647578 1573 dbSNP
rs1158154792 1585 dbSNP
rs1405890997 1586 dbSNP
rs1470994225 1587 dbSNP
rs1178569343 1589 dbSNP
rs1406695521 1594 dbSNP
rs1451778495 1598 dbSNP
rs1331977024 1601 dbSNP
rs1337249672 1602 dbSNP
rs1360009658 1603 dbSNP
rs756915897 1607 dbSNP
rs1024964645 1613 dbSNP
rs1224796996 1615 dbSNP
rs1399089857 1616 dbSNP
rs1264348040 1620 dbSNP
rs564229793 1627 dbSNP
rs1382251765 1630 dbSNP
rs575540312 1631 dbSNP
rs764195766 1632 dbSNP
rs754132966 1633 dbSNP
rs987822179 1642 dbSNP
rs1443954923 1655 dbSNP
rs80008114 1658 dbSNP
rs756597369 1659 dbSNP
rs996089423 1663 dbSNP
rs545804996 1672 dbSNP
rs1241214064 1694 dbSNP
rs899966935 1695 dbSNP
rs566564770 1697 dbSNP
rs1428625145 1705 dbSNP
rs1286129641 1708 dbSNP
rs1170674155 1718 dbSNP
rs1241450945 1719 dbSNP
rs943842951 1723 dbSNP
rs912308412 1725 dbSNP
rs187122208 1729 dbSNP
rs1348208047 1733 dbSNP
rs1041434599 1745 dbSNP
rs1406349403 1754 dbSNP
rs1359396160 1759 dbSNP
rs572361660 1760 dbSNP
rs1344256582 1773 dbSNP
rs1231711455 1779 dbSNP
rs1272425630 1780 dbSNP
rs753293429 1783 dbSNP
rs181159929 1784 dbSNP
rs566909376 1787 dbSNP
rs1272800634 1791 dbSNP
rs1230437525 1794 dbSNP
rs73373999 1798 dbSNP
rs1268277311 1800 dbSNP
rs1431512383 1802 dbSNP
rs1288579502 1807 dbSNP
rs369712232 1809 dbSNP
rs990054901 1812 dbSNP
rs973673152 1817 dbSNP
rs531108860 1821 dbSNP
rs1374705875 1823 dbSNP
rs1398398242 1827 dbSNP
rs1362484556 1831 dbSNP
rs958789607 1835 dbSNP
rs867634245 1839 dbSNP
rs1298913165 1844 dbSNP
rs72865098 1851 dbSNP
rs1015292957 1867 dbSNP
rs1166629841 1869 dbSNP
rs552139619 1870 dbSNP
rs141378527 1871 dbSNP
rs369819844 1878 dbSNP
rs1024995618 1882 dbSNP
rs559721929 1905 dbSNP
rs1227278467 1906 dbSNP
rs148690503 1906 dbSNP
rs532349975 1912 dbSNP
rs1247077349 1915 dbSNP
rs1291308441 1924 dbSNP
rs1490323731 1925 dbSNP
rs905317488 1928 dbSNP
rs995735973 1935 dbSNP
rs900083176 1944 dbSNP
rs1447535440 1948 dbSNP
rs563602296 1949 dbSNP
rs574223972 1950 dbSNP
rs1388091256 1956 dbSNP
rs563668426 1973 dbSNP
rs1163893191 1977 dbSNP
rs1367507266 1978 dbSNP
rs1455967988 1982 dbSNP
rs1290147781 1987 dbSNP
rs1216983122 1988 dbSNP
rs543792657 1998 dbSNP
rs1382162847 1999 dbSNP
rs1319126641 2023 dbSNP
rs1385513648 2025 dbSNP
rs1453813629 2026 dbSNP
rs9953490 2029 dbSNP
rs1053083324 2033 dbSNP
rs1404470854 2034 dbSNP
rs189939395 2037 dbSNP
rs776566296 2038 dbSNP
rs1349958837 2040 dbSNP
rs945707511 2041 dbSNP
rs914201372 2042 dbSNP
rs1050110405 2043 dbSNP
rs768631531 2044 dbSNP
rs764248459 2054 dbSNP
rs1255166127 2061 dbSNP
rs1421703827 2067 dbSNP
rs1168315234 2068 dbSNP
rs920373373 2082 dbSNP
rs937306739 2086 dbSNP
rs973256782 2092 dbSNP
rs962144800 2093 dbSNP
rs1198052895 2097 dbSNP
rs1479209401 2109 dbSNP
rs1268848565 2112 dbSNP
rs368268009 2121 dbSNP
rs1408905503 2124 dbSNP
rs556434184 2127 dbSNP
rs1470568489 2146 dbSNP
rs572972201 2156 dbSNP
rs1140836 2159 dbSNP
rs1393362743 2175 dbSNP
rs371511364 2176 dbSNP
rs1335305525 2183 dbSNP
rs371333000 2185 dbSNP
rs1226624531 2191 dbSNP
rs535934864 2201 dbSNP
rs567071753 2206 dbSNP
rs1325622720 2210 dbSNP
rs1140837 2214 dbSNP
rs1489111067 2215 dbSNP
rs144097441 2220 dbSNP
rs1482151878 2222 dbSNP
rs982793208 2224 dbSNP
rs73937119 2233 dbSNP
rs1179434630 2238 dbSNP
rs974474330 2242 dbSNP
rs969443565 2245 dbSNP
rs1175892627 2258 dbSNP
rs1357851037 2262 dbSNP
rs1463836118 2267 dbSNP
rs1022764077 2271 dbSNP
rs571174738 2279 dbSNP
rs1370152355 2284 dbSNP
rs964357295 2290 dbSNP
rs367633963 2291 dbSNP
rs1018924950 2297 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000341928.2 | 3UTR | UAGAGAUAUCCUGUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
94 hsa-miR-7161-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT131193 INCENP inner centromere protein 2 4
MIRT318016 CENPQ centromere protein Q 2 2
MIRT405275 ZNF678 zinc finger protein 678 2 2
MIRT442570 CCDC59 coiled-coil domain containing 59 2 2
MIRT442611 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT444013 GOLGA8H golgin A8 family member H 2 2
MIRT444024 GOLGA8M golgin A8 family member M 2 2
MIRT444339 GOLGA6L4 golgin A6 family-like 4 2 2
MIRT444611 GOLGA6L10 golgin A6 family-like 10 2 2
MIRT446342 MAN1A2 mannosidase alpha class 1A member 2 2 2
MIRT446558 GOLGA8J golgin A8 family member J 2 2
MIRT447671 PACSIN2 protein kinase C and casein kinase substrate in neurons 2 2 2
MIRT447975 MSH6 mutS homolog 6 2 2
MIRT448895 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT448936 CHD7 chromodomain helicase DNA binding protein 7 2 2
MIRT449414 TRIM5 tripartite motif containing 5 2 2
MIRT450291 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT454877 PCNA proliferating cell nuclear antigen 2 4
MIRT456615 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT462108 TMEM214 transmembrane protein 214 2 2
MIRT471923 NRAS NRAS proto-oncogene, GTPase 2 4
MIRT474437 KLHL21 kelch like family member 21 2 2
MIRT476600 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT480573 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT483890 IL20RB interleukin 20 receptor subunit beta 2 6
MIRT493363 KIF5B kinesin family member 5B 2 2
MIRT494934 TMEM167A transmembrane protein 167A 2 2
MIRT495915 CLDN1 claudin 1 2 2
MIRT501574 PLEKHF2 pleckstrin homology and FYVE domain containing 2 2 4
MIRT502193 IGF1R insulin like growth factor 1 receptor 2 4
MIRT502928 CDC42SE1 CDC42 small effector 1 2 4
MIRT506393 NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 2 4
MIRT506570 MNX1 motor neuron and pancreas homeobox 1 2 4
MIRT509478 GNL3L G protein nucleolar 3 like 2 6
MIRT518537 FLCN folliculin 2 6
MIRT519577 ZNFX1 zinc finger NFX1-type containing 1 2 4
MIRT524088 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 4
MIRT524146 LDHD lactate dehydrogenase D 2 4
MIRT524659 C1orf50 chromosome 1 open reading frame 50 2 10
MIRT526324 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526566 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT526612 ZNF780A zinc finger protein 780A 2 4
MIRT526889 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT527115 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT528023 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT529589 TMEM220 transmembrane protein 220 2 2
MIRT532797 STYK1 serine/threonine/tyrosine kinase 1 2 2
MIRT537099 GPC6 glypican 6 2 2
MIRT539070 ATP6V1C1 ATPase H+ transporting V1 subunit C1 2 2
MIRT545495 DAPK2 death associated protein kinase 2 2 2
MIRT545814 ZNF608 zinc finger protein 608 2 4
MIRT553533 TMEM185B transmembrane protein 185B 2 4
MIRT557285 HIST2H2BE histone cluster 2 H2B family member e 2 2
MIRT559552 ARGLU1 arginine and glutamate rich 1 2 4
MIRT561069 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT561710 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT561995 LRRC58 leucine rich repeat containing 58 2 2
MIRT565896 NHS NHS actin remodeling regulator 2 2
MIRT567333 HMGB1 high mobility group box 1 2 2
MIRT568042 CLDN12 claudin 12 2 2
MIRT568315 BAG4 BCL2 associated athanogene 4 2 2
MIRT570677 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT571047 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT571359 SFT2D2 SFT2 domain containing 2 2 2
MIRT571935 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT572786 ZNF277 zinc finger protein 277 2 2
MIRT573936 CNTNAP2 contactin associated protein like 2 2 2
MIRT576962 Anxa4 annexin A4 2 3
MIRT608297 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT613342 AFF1 AF4/FMR2 family member 1 2 2
MIRT613529 ANAPC7 anaphase promoting complex subunit 7 2 2
MIRT614705 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT616658 ORAI1 ORAI calcium release-activated calcium modulator 1 2 2
MIRT624731 ANXA4 annexin A4 2 3
MIRT626525 TSC1 TSC complex subunit 1 2 2
MIRT627647 SCN1A sodium voltage-gated channel alpha subunit 1 2 2
MIRT637423 EPB41L3 erythrocyte membrane protein band 4.1 like 3 2 2
MIRT641059 TCP11L1 t-complex 11 like 1 2 4
MIRT645591 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT646455 ZNF705A zinc finger protein 705A 2 2
MIRT656454 MAPK6 mitogen-activated protein kinase 6 2 2
MIRT676551 TMPPE transmembrane protein with metallophosphoesterase domain 2 4
MIRT682720 KIAA1456 KIAA1456 2 2
MIRT698307 TMEM2 transmembrane protein 2 2 2
MIRT701906 MMGT1 membrane magnesium transporter 1 2 2
MIRT702228 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT708642 UBE2W ubiquitin conjugating enzyme E2 W 2 2
MIRT709326 HMBOX1 homeobox containing 1 2 2
MIRT711400 RANBP2 RAN binding protein 2 2 2
MIRT712130 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT714226 ARMC10 armadillo repeat containing 10 2 2
MIRT716914 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT723060 FGD6 FYVE, RhoGEF and PH domain containing 6 2 2
MIRT723846 MN1 MN1 proto-oncogene, transcriptional regulator 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-7161-5p Paclitaxel 36314 NSC125973 approved resistant High Ovarian Cancer cell line (HEYA8)

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