pre-miRNA Information
pre-miRNA hsa-mir-4680   
Genomic Coordinates chr10: 110898090 - 110898155
Description Homo sapiens miR-4680 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4680-5p
Sequence 5| AGAACUCUUGCAGUCUUAGAUGU |27
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1274530692 2 dbSNP
rs780271274 5 dbSNP
rs1461423681 7 dbSNP
rs749729920 8 dbSNP
rs1252920446 10 dbSNP
rs201739274 11 dbSNP
rs774971106 19 dbSNP
rs748132091 22 dbSNP
rs773643180 22 dbSNP
rs1235425484 23 dbSNP
Putative Targets

Gene Information
Gene Symbol IVD   
Synonyms ACAD2
Description isovaleryl-CoA dehydrogenase
Transcript NM_002225   
Other Transcripts NM_001159508   
Expression
Putative miRNA Targets on IVD
3'UTR of IVD
(miRNA target sites are highlighted)
>IVD|NM_002225|3'UTR
   1 TCCTGAGACCCTTCGCCCCCTTTTCCTGCACCTAGTGGCCTTTCTTGGGAAGTAGAGATGTGGCGGCTTTCCCACCCTGC
  81 CCACAGCAGGCCCTCCTGCCCAGCTGCTCTTGTCAGCCCTCTGGCCTCTGGATGAGGTTGAGTTCTCCACAACAGCTCCC
 161 AAGCATCATGGGCCTCGCAGCCGGGCCTGTGCCACGGCTAGTGTTGTGTGATTTAAAATGGACTCAGCAGGAAGCATATT
 241 GTCTGGGGATTGTTGGGACAGGTTTTGGTGACTCTGTGCCCTTGCTCTCTAACTTCTGAGCCCACCTCCCAGGGTAGGCA
 321 CCTGGGGGCATGCAGGTGCCCACCTCCCAGGGTAGGCACCTGGGGGCATGCAGGTACCCACCTCTTTCTCTTGGGTGAGG
 401 CTCTGGCAAGGAGATCTCTCTGCTCAAGCACAGCAGAATCATGGCCCCTCTCCATGAATTGGAACTTGGTACAGGTTAAG
 481 TATCCCTAATCCTGAAATCTGAAACACTTGTGGTTCCAAGCATTTTGGATAAGGCAAATTCAACTTTCAGTCTCTTTTCT
 561 GGGGGAAAAAAATAATAAACCTAGCCTAGCCAGGCGTGGTGGCTCATGCTTGTAATCCCAGCACTTCAGGAGGCTGAGAT
 641 GGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGTGGAAACCTCGCCTCAACTAAAAATAGAAAAA
 721 AATTAGTTGGGCATGGTGGTGGGCACCTGTAATCCCAGCTACTTCAGGAGGCTGAGGCAGGAGAATTACTTGAACCCAGG
 801 AGGCGGACGTTGCAGTGAGCCGAGCTTGTGCCATTGCACTCCAGCCTGGGCGACAAGAGCAAAACTCTTCAAAAAACAAA
 881 ACAAAACAAAAAAACCCTGGCCCTTGTTTCTTCCAGTTTCTAGAGGTATCAGCTCCTAGCAGCTTATGAACACATATGCT
 961 TGCTTGGCCAGGCAAGGTGGTGTGTGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACTTGCAGTCAGG
1041 AGTTCAAGACCAGCCTGTCCAACGTGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGGGTGGTGGTGCAC
1121 GTCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGTGGAGGTTGCAATGAGCCAATA
1201 TGACACCGCTGCAGTCCAGCCTGGGCCATAGAGTGAGACTCTGTCTCAAAAAAGGAAAGAAAAATAGGCTGGGCACAGTG
1281 ACTCATGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGTTCAAGACCAGCCTGGCCA
1361 AGATGGTAAAACCTCGTCTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGGCAGGCTCCTGTAATCCCAGCTACTCA
1441 GGAGGCTGAGGCAGAGAATTGCTTGAACCCGGGAGGCAGAGTTTGCAGTGAGCCAAGATCACACCACTGCACTCCAGCTT
1521 GGACGACAGAGCGAGACTCTGTCTCAAAAAATAATAGGCCAGGCATGGTGGCTCAACGTCTGTAATCCCAGCACTTTGGG
1601 AGGCCGAGGCGGGCAGATCACAAGGTCAGGAGTTCGAGACCAGCCTGACGACCAACATGGTGAAACCTCGTCTCTACTAA
1681 AAATACAAAAATTAGCCAGGCCTGGTGGCACGCGCCTGTAATCCCAGTTACACAGAAGACTGAGGCAGGAGAATCGCTTG
1761 AACGCAGGAGGCAGAGGTTGCAGGAGCTGAGATCGCGCCATTGCACTCCAGCCTGGGCAACAGAGTGAGACTCTGTCTCA
1841 AAAAATAATAATAAAATAAATGAACACACATGCTGCTGAGTCCGCAGGGGGGGCAGAGCAGAGGACAGCGTGCTTTTGTG
1921 TACTGTTGGAAGACTGGCTCCTCCTGTACAGCACCTCTGAGCCCTTGTGCACCGCCCTGCCACGGGCACCATCCAGTCCT
2001 GGCCGTGTGACCACCCACAGCTGACTGGGCAGCAGGCACAGGCCCTACCCGAGCAGGCCGGAGTTGGCTCGCATGACTCC
2081 AGCTGAGGCTGCCTGTGTACATTTCTCCAGATACCCTATGGCTAATTTTGTTATAACTGCACAGTGGCTGCTGCCATTTT
2161 GTATTAAATATATTGTGAAACAAACCTATCTGGGGAGAAGCAATCTACTTGCCGCTGCTTCCTGTCTGGATCCAGCTTGT
2241 GTCCTTGGAGAGTGGCTGGCCCAGGTCCTATTCCTGTCCTCCAGCCCGTTCTTTCATGAGGGACAGGAAGGTAAAATCAG
2321 CCCTTAGGAGAGAGGTCTCAGCCTCCCTTTCCCAGATCTCCCAGTGAGTTTTAAAGGAAGCAGGGAGCCCAGAGTGCTAA
2401 GTTCTTACAGCCAGAAGGAAGCTTATAGATTTCTGAAAACCGCCCCTTTGTTTTTAAAAAGATCAACACAATTTGACTTT
2481 CTCAAGGTCAAAACGAACTAGAATCCAGATCTGCTCATGGCAAAAATGGGGGTGTTCTGAGAATTCCAGCTTTGGGCCGC
2561 ACTGTACAGCAGTCTGGATAGAGTGTGATCTGAGAAGGGAATGGGTCTGGGTTGTTCCACCCCTTCCGAGTTCCAAAAAG
2641 AGGGAACTGGTTTTCTTGGTTCTCAGCCCAGCAGCACCTATCCTGGCTCTTGGTCCTGGCCTGCAGCCAAGTGCTGTTCC
2721 TAGCCTGAGGCTTGAGACAGGTGGGGTTGGCTCCTCACCAACCCCAGTTCCGTCCCATCCTGAGGGCAAGATCCTGGGCT
2801 CATAGGCAGTCCCTTTCACTTCCTTGTCTTGCTCCCTGCTATGTTGGAGATGAATGTGACTAAAAGGGCCATCTTGCTGG
2881 CTTAATGTGTGGCTGGAGAGACCAGCCTGGAGACAATGTGGCAAAATGGGGCGCTTCATCCAGTCTGTCTAAGCCCTGTC
2961 GACTTGGGGAGGTGATTTCTTTCCTGGTTCTATATGTGAAGCAAAATAAATGTTTTAAAATTAAAAGCAAAAAAAACAAA
3041 ATGAACCATGAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugUAGAUUCUGACGUUCUCAAGa 5'
            | ||:||::  ||:|||||| 
Target 5' tcACCTGAGGT--CAGGAGTTCa 3'
648 - 668 149.00 -17.10
2
miRNA  3' ugUAG-AUUCUGACGUUCUCAAGa 5'
            |||  |||::  ||:|||||| 
Target 5' agATCACAAGGT--CAGGAGTTCg 3'
1615 - 1636 145.00 -12.50
3
miRNA  3' ugUAGAUUCUGACGUUCUCAAGa 5'
            ||| | ||   ||:|||||| 
Target 5' ggATC-ACGAGGTCAGGAGTTCa 3'
1324 - 1345 144.00 -12.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
203782 15 ClinVar
1186849 16 ClinVar
884362 113 ClinVar
315804 124 ClinVar
884363 132 ClinVar
315805 196 ClinVar
884364 197 ClinVar
315806 205 ClinVar
315807 262 ClinVar
886388 288 ClinVar
315808 290 ClinVar
315809 339 ClinVar
315810 385 ClinVar
315811 448 ClinVar
315812 567 ClinVar
886389 567 ClinVar
886390 569 ClinVar
315813 597 ClinVar
315814 612 ClinVar
887385 653 ClinVar
887386 700 ClinVar
887387 788 ClinVar
887388 799 ClinVar
887389 806 ClinVar
315815 809 ClinVar
315816 810 ClinVar
887576 823 ClinVar
887577 826 ClinVar
315817 1006 ClinVar
887578 1091 ClinVar
315818 1118 ClinVar
887579 1173 ClinVar
887580 1209 ClinVar
315819 1214 ClinVar
884430 1241 ClinVar
884431 1246 ClinVar
884432 1314 ClinVar
884433 1377 ClinVar
315820 1472 ClinVar
315821 1578 ClinVar
315822 1611 ClinVar
885362 1637 ClinVar
885363 1840 ClinVar
885364 1885 ClinVar
315823 1887 ClinVar
315824 1891 ClinVar
315825 1899 ClinVar
887454 1945 ClinVar
887455 1985 ClinVar
887456 2002 ClinVar
315826 2006 ClinVar
315827 2071 ClinVar
887457 2126 ClinVar
887458 2206 ClinVar
887459 2236 ClinVar
315828 2276 ClinVar
315829 2286 ClinVar
315830 2303 ClinVar
887640 2390 ClinVar
315831 2495 ClinVar
887641 2495 ClinVar
315832 2560 ClinVar
315833 2631 ClinVar
315834 2845 ClinVar
315835 2851 ClinVar
884494 2884 ClinVar
315836 2913 ClinVar
884495 2961 ClinVar
315837 3029 ClinVar
884496 3037 ClinVar
COSN31552972 16 COSMIC
COSN30466616 21 COSMIC
COSN31583732 21 COSMIC
COSN30488913 40 COSMIC
COSN31491990 52 COSMIC
COSN30116627 75 COSMIC
COSN30104227 94 COSMIC
COSN5173737 202 COSMIC
COSN29761055 339 COSMIC
COSN22169857 538 COSMIC
COSN28899620 823 COSMIC
COSN30611297 868 COSMIC
COSN2493380 968 COSMIC
COSN14799048 1050 COSMIC
COSN31959649 1194 COSMIC
COSN22725063 1272 COSMIC
COSN32148503 1529 COSMIC
COSN20111945 1894 COSMIC
COSN32064611 1942 COSMIC
COSN4761808 1944 COSMIC
COSN20078344 2074 COSMIC
COSN30699769 2118 COSMIC
COSN27499806 2328 COSMIC
COSN20989671 2356 COSMIC
COSN23462199 2490 COSMIC
COSN21226681 2886 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs938062574 1 dbSNP
rs1362173401 3 dbSNP
rs1328271998 10 dbSNP
rs1228507316 12 dbSNP
rs8040294 15 dbSNP
rs112765023 16 dbSNP
rs369667477 19 dbSNP
rs1337301959 20 dbSNP
rs1236906106 21 dbSNP
rs1046712881 24 dbSNP
rs769056725 26 dbSNP
rs369472717 28 dbSNP
rs886745848 36 dbSNP
rs776987475 37 dbSNP
rs1193504300 39 dbSNP
rs748298627 45 dbSNP
rs1447458131 53 dbSNP
rs1413311040 54 dbSNP
rs1042535765 62 dbSNP
rs1041153557 63 dbSNP
rs538799297 65 dbSNP
rs751207255 97 dbSNP
rs558721558 113 dbSNP
rs998548934 118 dbSNP
rs577706202 120 dbSNP
rs536728525 124 dbSNP
rs1262957898 131 dbSNP
rs190115786 132 dbSNP
rs1007187503 137 dbSNP
rs1243581689 139 dbSNP
rs893381174 143 dbSNP
rs1017696872 146 dbSNP
rs1445987336 151 dbSNP
rs1371046324 167 dbSNP
rs868854678 177 dbSNP
rs995182252 178 dbSNP
rs1026134981 183 dbSNP
rs1165169561 184 dbSNP
rs573527656 185 dbSNP
rs1426715791 187 dbSNP
rs1386263707 195 dbSNP
rs77680513 196 dbSNP
rs1417892978 197 dbSNP
rs886051127 205 dbSNP
rs1035727345 207 dbSNP
rs982187608 208 dbSNP
rs927993866 211 dbSNP
rs553261385 231 dbSNP
rs1267469376 234 dbSNP
rs1219811210 235 dbSNP
rs35599751 245 dbSNP
rs2075624 262 dbSNP
rs1381577384 275 dbSNP
rs545271626 278 dbSNP
rs919787120 282 dbSNP
rs147206510 285 dbSNP
rs565064447 288 dbSNP
rs529793013 290 dbSNP
rs886051128 290 dbSNP
rs1367004776 297 dbSNP
rs368025013 300 dbSNP
rs1407027048 302 dbSNP
rs1292863935 303 dbSNP
rs1366391939 305 dbSNP
rs1158473430 307 dbSNP
rs908457843 314 dbSNP
rs915244347 318 dbSNP
rs1333150309 328 dbSNP
rs1160470699 332 dbSNP
rs1230555076 334 dbSNP
rs946970104 336 dbSNP
rs531068507 337 dbSNP
rs978341502 338 dbSNP
rs879231133 339 dbSNP
rs1269132241 348 dbSNP
rs1261661599 349 dbSNP
rs1484768695 355 dbSNP
rs1262203173 361 dbSNP
rs934200186 366 dbSNP
rs1401321763 367 dbSNP
rs1203867977 368 dbSNP
rs1281498677 372 dbSNP
rs1225402292 377 dbSNP
rs1051208889 380 dbSNP
rs1040755317 381 dbSNP
rs899565746 383 dbSNP
rs145781896 385 dbSNP
rs886051129 385 dbSNP
rs527849281 391 dbSNP
rs890169843 402 dbSNP
rs943126292 404 dbSNP
rs1289765269 414 dbSNP
rs1188253362 415 dbSNP
rs181075595 416 dbSNP
rs1466009249 417 dbSNP
rs1427781066 424 dbSNP
rs1416639726 426 dbSNP
rs1481126421 432 dbSNP
rs1474014872 445 dbSNP
rs1038674505 447 dbSNP
rs79191320 448 dbSNP
rs1263614232 451 dbSNP
rs186293612 456 dbSNP
rs774581954 458 dbSNP
rs1453033505 460 dbSNP
rs1011750847 462 dbSNP
rs1460851244 468 dbSNP
rs1156698359 470 dbSNP
rs546900720 475 dbSNP
rs1205723608 481 dbSNP
rs566868717 484 dbSNP
rs1020923846 489 dbSNP
rs994753674 497 dbSNP
rs1269605743 498 dbSNP
rs1026271909 501 dbSNP
rs1312508850 509 dbSNP
rs903466337 512 dbSNP
rs746020585 513 dbSNP
rs1296797392 520 dbSNP
rs532655934 522 dbSNP
rs1404616959 523 dbSNP
rs1003342073 528 dbSNP
rs552386119 541 dbSNP
rs1339269010 554 dbSNP
rs1034862211 565 dbSNP
rs1308206796 566 dbSNP
rs549510775 567 dbSNP
rs1237552427 571 dbSNP
rs765034368 581 dbSNP
rs991503850 584 dbSNP
rs991334981 586 dbSNP
rs1022281888 592 dbSNP
rs149755898 595 dbSNP
rs1349421929 596 dbSNP
rs115034694 597 dbSNP
rs556745416 599 dbSNP
rs1461671390 600 dbSNP
rs1272415237 601 dbSNP
rs1194122543 603 dbSNP
rs1272939729 609 dbSNP
rs886051130 612 dbSNP
rs986902294 628 dbSNP
rs911399401 630 dbSNP
rs567262030 631 dbSNP
rs1484509223 648 dbSNP
rs761306144 653 dbSNP
rs1454008009 654 dbSNP
rs1251006797 657 dbSNP
rs908452408 658 dbSNP
rs191997379 659 dbSNP
rs943991849 663 dbSNP
rs1398267919 670 dbSNP
rs202127632 686 dbSNP
rs1423541420 693 dbSNP
rs920901317 695 dbSNP
rs1165191939 699 dbSNP
rs1039225701 700 dbSNP
rs932322773 701 dbSNP
rs1435242820 708 dbSNP
rs1053491726 716 dbSNP
rs1251257862 732 dbSNP
rs1234820453 735 dbSNP
rs1173162167 740 dbSNP
rs1357492366 754 dbSNP
rs898825797 763 dbSNP
rs930338292 771 dbSNP
rs1047433456 775 dbSNP
rs1350658433 787 dbSNP
rs1278287842 799 dbSNP
rs886325284 801 dbSNP
rs868156313 805 dbSNP
rs183425220 806 dbSNP
rs2075625 809 dbSNP
rs886051131 810 dbSNP
rs545308440 813 dbSNP
rs558747313 822 dbSNP
rs373923824 823 dbSNP
rs7182052 826 dbSNP
rs968162419 831 dbSNP
rs544709780 838 dbSNP
rs978029489 839 dbSNP
rs1234162773 848 dbSNP
rs1198738718 853 dbSNP
rs894459187 854 dbSNP
rs1279053581 855 dbSNP
rs1345058743 856 dbSNP
rs1487575020 869 dbSNP
rs1193057986 873 dbSNP
rs1030974159 886 dbSNP
rs955598445 887 dbSNP
rs1026993277 888 dbSNP
rs1252376104 888 dbSNP
rs762571908 892 dbSNP
rs1395618049 893 dbSNP
rs1225995889 894 dbSNP
rs1351972373 896 dbSNP
rs1434099709 899 dbSNP
rs952861468 903 dbSNP
rs1300999634 909 dbSNP
rs1387299112 910 dbSNP
rs1222349471 913 dbSNP
rs1343319584 914 dbSNP
rs1382820684 917 dbSNP
rs1317947002 919 dbSNP
rs773789235 923 dbSNP
rs189226861 926 dbSNP
rs911383651 927 dbSNP
rs763325446 929 dbSNP
rs1015456160 936 dbSNP
rs1402408471 939 dbSNP
rs965599674 940 dbSNP
rs1232802306 949 dbSNP
rs575183667 951 dbSNP
rs1352255420 954 dbSNP
rs1399773445 954 dbSNP
rs765927012 955 dbSNP
rs1431453061 956 dbSNP
rs751258245 958 dbSNP
rs1463218914 964 dbSNP
rs1195107751 969 dbSNP
rs1240746227 971 dbSNP
rs1253457606 972 dbSNP
rs530129218 973 dbSNP
rs540269821 975 dbSNP
rs1173919350 985 dbSNP
rs35694358 995 dbSNP
rs538291553 999 dbSNP
rs1263045468 1003 dbSNP
rs1320810493 1006 dbSNP
rs560096869 1006 dbSNP
rs759105597 1009 dbSNP
rs1284586545 1011 dbSNP
rs767403377 1012 dbSNP
rs914975387 1015 dbSNP
rs1056818440 1019 dbSNP
rs1268242192 1024 dbSNP
rs894976526 1025 dbSNP
rs1395647231 1030 dbSNP
rs1440851442 1034 dbSNP
rs1301834027 1035 dbSNP
rs1365922682 1039 dbSNP
rs1336004818 1047 dbSNP
rs1468113691 1049 dbSNP
rs1364888020 1051 dbSNP
rs1176825262 1058 dbSNP
rs1215759420 1059 dbSNP
rs1409646299 1063 dbSNP
rs1295653114 1064 dbSNP
rs752411713 1065 dbSNP
rs1196329138 1067 dbSNP
rs1042267037 1068 dbSNP
rs1274865409 1070 dbSNP
rs1468712260 1076 dbSNP
rs1213022561 1078 dbSNP
rs924776758 1080 dbSNP
rs1182306520 1085 dbSNP
rs1476439518 1087 dbSNP
rs1257277262 1091 dbSNP
rs938868507 1104 dbSNP
rs1306612041 1105 dbSNP
rs1270432281 1113 dbSNP
rs1187254678 1115 dbSNP
rs28532413 1116 dbSNP
rs886051132 1118 dbSNP
rs1012453870 1121 dbSNP
rs1043574370 1122 dbSNP
rs1303544356 1123 dbSNP
rs756115845 1136 dbSNP
rs1167309089 1142 dbSNP
rs1167661720 1147 dbSNP
rs1379039491 1149 dbSNP
rs1434929195 1150 dbSNP
rs1419076048 1155 dbSNP
rs1176895965 1158 dbSNP
rs1377213516 1160 dbSNP
rs1461193738 1163 dbSNP
rs1324489696 1164 dbSNP
rs1047821716 1172 dbSNP
rs532691940 1173 dbSNP
rs999583930 1174 dbSNP
rs1030943159 1179 dbSNP
rs1288980134 1180 dbSNP
rs1360630062 1181 dbSNP
rs1216433254 1188 dbSNP
rs955405069 1191 dbSNP
rs552425184 1193 dbSNP
rs1335238117 1199 dbSNP
rs1480027140 1200 dbSNP
rs1008429037 1208 dbSNP
rs7165233 1209 dbSNP
rs886051133 1214 dbSNP
rs1342385238 1220 dbSNP
rs146819701 1241 dbSNP
rs974616361 1246 dbSNP
rs1016111733 1248 dbSNP
rs965201472 1248 dbSNP
rs1223080322 1269 dbSNP
rs757344224 1270 dbSNP
rs951756030 1281 dbSNP
rs1333684090 1282 dbSNP
rs763997470 1283 dbSNP
rs983227663 1297 dbSNP
rs1241620522 1305 dbSNP
rs1299915860 1313 dbSNP
rs550652153 1314 dbSNP
rs939037198 1315 dbSNP
rs1056134764 1316 dbSNP
rs1426934753 1316 dbSNP
rs1258423246 1321 dbSNP
rs1474997986 1324 dbSNP
rs916448945 1330 dbSNP
rs554514443 1331 dbSNP
rs948011125 1332 dbSNP
rs1159033023 1334 dbSNP
rs1417797261 1340 dbSNP
rs1410574747 1342 dbSNP
rs1405200649 1345 dbSNP
rs1401843748 1346 dbSNP
rs1183668146 1355 dbSNP
rs567297452 1356 dbSNP
rs1344121157 1357 dbSNP
rs1397513956 1358 dbSNP
rs1317270495 1363 dbSNP
rs1267715083 1365 dbSNP
rs953980961 1366 dbSNP
rs1314344848 1368 dbSNP
rs1404076006 1368 dbSNP
rs1384094177 1369 dbSNP
rs1355760314 1373 dbSNP
rs903720810 1376 dbSNP
rs536344215 1377 dbSNP
rs1290340978 1381 dbSNP
rs1352516206 1389 dbSNP
rs778897908 1392 dbSNP
rs1224302815 1393 dbSNP
rs553038573 1400 dbSNP
rs1281612639 1402 dbSNP
rs1283392950 1408 dbSNP
rs1391927278 1408 dbSNP
rs1288610525 1411 dbSNP
rs1452303431 1412 dbSNP
rs1347442070 1413 dbSNP
rs1351619603 1414 dbSNP
rs1213190292 1418 dbSNP
rs1341884037 1419 dbSNP
rs1258314709 1421 dbSNP
rs891126253 1422 dbSNP
rs1434496105 1429 dbSNP
rs1008609013 1432 dbSNP
rs1018286505 1436 dbSNP
rs977846280 1438 dbSNP
rs1484883184 1441 dbSNP
rs1470692532 1454 dbSNP
rs1269931950 1457 dbSNP
rs1177138813 1461 dbSNP
rs1406348635 1462 dbSNP
rs140465296 1470 dbSNP
rs1175046294 1471 dbSNP
rs4923865 1472 dbSNP
rs1261279593 1474 dbSNP
rs1235734163 1478 dbSNP
rs1027552740 1487 dbSNP
rs951557896 1490 dbSNP
rs1057266249 1491 dbSNP
rs1380872372 1492 dbSNP
rs190880106 1498 dbSNP
rs1014641699 1501 dbSNP
rs960451975 1506 dbSNP
rs1469685170 1511 dbSNP
rs1404751364 1512 dbSNP
rs1173583316 1513 dbSNP
rs992205941 1516 dbSNP
rs916266994 1523 dbSNP
rs947948590 1524 dbSNP
rs1442596810 1525 dbSNP
rs1192280769 1526 dbSNP
rs1278728241 1532 dbSNP
rs979403600 1533 dbSNP
rs575407919 1534 dbSNP
rs940016794 1537 dbSNP
rs1281185434 1538 dbSNP
rs1347177668 1540 dbSNP
rs1460782914 1540 dbSNP
rs1241399585 1546 dbSNP
rs1037082726 1548 dbSNP
rs901285165 1555 dbSNP
rs998014020 1560 dbSNP
rs1028185714 1566 dbSNP
rs1275297754 1574 dbSNP
rs11630850 1578 dbSNP
rs1204336449 1579 dbSNP
rs554738498 1606 dbSNP
rs1402556747 1607 dbSNP
rs386783339 1608 dbSNP
rs560208226 1609 dbSNP
rs11630878 1611 dbSNP
rs1168955368 1612 dbSNP
rs1443984123 1619 dbSNP
rs1395193595 1622 dbSNP
rs966364545 1628 dbSNP
rs560135738 1637 dbSNP
rs769091155 1642 dbSNP
rs1194315767 1645 dbSNP
rs1484137355 1647 dbSNP
rs1040090234 1650 dbSNP
rs368774522 1651 dbSNP
rs960483400 1654 dbSNP
rs992942999 1659 dbSNP
rs1286468934 1663 dbSNP
rs899859183 1668 dbSNP
rs1447297530 1669 dbSNP
rs996152124 1670 dbSNP
rs1170464283 1671 dbSNP
rs1027278071 1673 dbSNP
rs1327553239 1675 dbSNP
rs887359063 1692 dbSNP
rs1004350094 1694 dbSNP
rs576791662 1698 dbSNP
rs1398260500 1702 dbSNP
rs546483981 1706 dbSNP
rs1308466109 1707 dbSNP
rs777287799 1712 dbSNP
rs573007850 1713 dbSNP
rs762339649 1714 dbSNP
rs1164944169 1715 dbSNP
rs562991820 1717 dbSNP
rs984349552 1721 dbSNP
rs960760855 1730 dbSNP
rs1179715037 1734 dbSNP
rs770627132 1737 dbSNP
rs1252797185 1741 dbSNP
rs1443037028 1750 dbSNP
rs1304012315 1753 dbSNP
rs1370340473 1755 dbSNP
rs1231083904 1756 dbSNP
rs867509911 1757 dbSNP
rs1350549401 1764 dbSNP
rs1340400449 1772 dbSNP
rs1195412190 1781 dbSNP
rs1023734352 1790 dbSNP
rs910132295 1792 dbSNP
rs1288591625 1793 dbSNP
rs1403890291 1795 dbSNP
rs182320281 1796 dbSNP
rs979759127 1797 dbSNP
rs552452829 1798 dbSNP
rs751478864 1798 dbSNP
rs925240293 1798 dbSNP
rs1157109868 1802 dbSNP
rs1458884453 1805 dbSNP
rs1412717781 1813 dbSNP
rs1198988015 1818 dbSNP
rs935239374 1823 dbSNP
rs1248857026 1831 dbSNP
rs1479552868 1831 dbSNP
rs1199996527 1832 dbSNP
rs1446987045 1834 dbSNP
rs186670312 1840 dbSNP
rs912374307 1841 dbSNP
rs1330620777 1843 dbSNP
rs1252857737 1844 dbSNP
rs1268151040 1855 dbSNP
rs756453656 1861 dbSNP
rs901237028 1864 dbSNP
rs944136288 1874 dbSNP
rs562252152 1884 dbSNP
rs1325854341 1885 dbSNP
rs1374266316 1886 dbSNP
rs1175754360 1887 dbSNP
rs1259692630 1887 dbSNP
rs1458699707 1887 dbSNP
rs398026948 1887 dbSNP
rs529843170 1889 dbSNP
rs546693286 1890 dbSNP
rs12185076 1891 dbSNP
rs887386650 1892 dbSNP
rs1004450033 1893 dbSNP
rs1280291846 1898 dbSNP
rs886051134 1899 dbSNP
rs1462756619 1900 dbSNP
rs1023343008 1906 dbSNP
rs1326511413 1906 dbSNP
rs1338525547 1910 dbSNP
rs1437231986 1915 dbSNP
rs1365807075 1925 dbSNP
rs1035878435 1927 dbSNP
rs895956080 1929 dbSNP
rs1385001701 1935 dbSNP
rs1320413094 1938 dbSNP
rs1013759724 1941 dbSNP
rs910131258 1945 dbSNP
rs1450694462 1947 dbSNP
rs1227009715 1948 dbSNP
rs1180844485 1950 dbSNP
rs1481992650 1950 dbSNP
rs1276467525 1953 dbSNP
rs1238648116 1957 dbSNP
rs538600078 1958 dbSNP
rs1444789428 1959 dbSNP
rs1482502668 1961 dbSNP
rs1337424887 1963 dbSNP
rs940287082 1964 dbSNP
rs972747816 1974 dbSNP
rs773719683 1975 dbSNP
rs1314295508 1978 dbSNP
rs1272943862 1983 dbSNP
rs969539454 1985 dbSNP
rs1238041383 1989 dbSNP
rs1441803348 1994 dbSNP
rs759281192 1996 dbSNP
rs1310302971 1997 dbSNP
rs185013442 2002 dbSNP
rs767044366 2005 dbSNP
rs886051135 2006 dbSNP
rs933999504 2007 dbSNP
rs752352907 2021 dbSNP
rs1181906163 2024 dbSNP
rs1472090373 2033 dbSNP
rs1249153955 2050 dbSNP
rs1206770743 2051 dbSNP
rs987991835 2057 dbSNP
rs77460541 2060 dbSNP
rs1260514272 2061 dbSNP
rs187887699 2071 dbSNP
rs193199905 2072 dbSNP
rs975650681 2074 dbSNP
rs1223281323 2077 dbSNP
rs921393862 2078 dbSNP
rs1043991887 2082 dbSNP
rs902410263 2083 dbSNP
rs931376335 2093 dbSNP
rs138876234 2096 dbSNP
rs999820176 2102 dbSNP
rs1160186284 2108 dbSNP
rs1459938175 2113 dbSNP
rs1056328692 2115 dbSNP
rs1399420428 2119 dbSNP
rs1456249360 2122 dbSNP
rs1048450160 2126 dbSNP
rs1183922460 2138 dbSNP
rs1357677453 2140 dbSNP
rs763819958 2144 dbSNP
rs776320823 2154 dbSNP
rs1023331567 2167 dbSNP
rs951836929 2170 dbSNP
rs1207959516 2182 dbSNP
rs534043098 2189 dbSNP
rs753780323 2192 dbSNP
rs757183267 2196 dbSNP
rs940268146 2198 dbSNP
rs1017546291 2204 dbSNP
rs185128282 2206 dbSNP
rs576829077 2214 dbSNP
rs545923231 2215 dbSNP
rs1385842764 2217 dbSNP
rs922853322 2219 dbSNP
rs750451493 2225 dbSNP
rs1457488831 2228 dbSNP
rs904968458 2231 dbSNP
rs189359145 2236 dbSNP
rs1434692410 2247 dbSNP
rs1031983762 2258 dbSNP
rs946814832 2260 dbSNP
rs1002778147 2261 dbSNP
rs956342089 2263 dbSNP
rs1033937484 2264 dbSNP
rs28452269 2265 dbSNP
rs958497940 2267 dbSNP
rs1187879171 2269 dbSNP
rs1463460050 2272 dbSNP
rs11790 2276 dbSNP
rs372973889 2277 dbSNP
rs542488129 2285 dbSNP
rs114657778 2286 dbSNP
rs1235613107 2288 dbSNP
rs527854996 2288 dbSNP
rs965667442 2289 dbSNP
rs886051136 2303 dbSNP
rs975301922 2307 dbSNP
rs1322039638 2311 dbSNP
rs1435180502 2324 dbSNP
rs921079375 2329 dbSNP
rs952790971 2330 dbSNP
rs984176136 2337 dbSNP
rs780172576 2341 dbSNP
rs939963676 2354 dbSNP
rs181729371 2356 dbSNP
rs917541061 2359 dbSNP
rs1393439893 2361 dbSNP
rs1006357556 2362 dbSNP
rs574682014 2378 dbSNP
rs747193406 2382 dbSNP
rs1308139002 2383 dbSNP
rs1376895371 2385 dbSNP
rs1476246500 2388 dbSNP
rs1238570712 2390 dbSNP
rs1189373618 2395 dbSNP
rs1441926228 2397 dbSNP
rs1306517461 2402 dbSNP
rs1202427014 2403 dbSNP
rs1349357049 2407 dbSNP
rs1211163972 2409 dbSNP
rs1014697474 2417 dbSNP
rs1345019884 2427 dbSNP
rs961805800 2432 dbSNP
rs1482064602 2442 dbSNP
rs1044590170 2443 dbSNP
rs560244242 2462 dbSNP
rs1250936350 2473 dbSNP
rs1375657728 2478 dbSNP
rs1307250414 2482 dbSNP
rs1439065661 2485 dbSNP
rs1000581551 2486 dbSNP
rs769144225 2489 dbSNP
rs1472401732 2490 dbSNP
rs781683880 2495 dbSNP
rs1009223424 2500 dbSNP
rs1019686189 2506 dbSNP
rs1424673009 2508 dbSNP
rs1251354830 2509 dbSNP
rs901113135 2510 dbSNP
rs1175638909 2511 dbSNP
rs997144406 2515 dbSNP
rs1463715642 2521 dbSNP
rs985440857 2524 dbSNP
rs1299136892 2533 dbSNP
rs1263224583 2534 dbSNP
rs1028170178 2535 dbSNP
rs1246338789 2537 dbSNP
rs1355776211 2550 dbSNP
rs952489470 2559 dbSNP
rs532233403 2560 dbSNP
rs984206384 2563 dbSNP
rs1404741714 2573 dbSNP
rs1328436599 2584 dbSNP
rs1015725276 2591 dbSNP
rs961444881 2598 dbSNP
rs1219365848 2602 dbSNP
rs1462035620 2602 dbSNP
rs1180321419 2605 dbSNP
rs1473673659 2616 dbSNP
rs539042633 2620 dbSNP
rs368709470 2624 dbSNP
rs1310119563 2628 dbSNP
rs1292643042 2629 dbSNP
rs28654574 2631 dbSNP
rs949014921 2638 dbSNP
rs1251699788 2639 dbSNP
rs1266890747 2639 dbSNP
rs1226229728 2642 dbSNP
rs980729981 2649 dbSNP
rs991990761 2651 dbSNP
rs1329070059 2662 dbSNP
rs531526442 2671 dbSNP
rs926128171 2676 dbSNP
rs936213468 2681 dbSNP
rs1388039499 2683 dbSNP
rs1468434819 2687 dbSNP
rs1156998179 2694 dbSNP
rs1459068145 2697 dbSNP
rs1053209879 2706 dbSNP
rs1196675079 2717 dbSNP
rs1172429643 2721 dbSNP
rs1477249217 2731 dbSNP
rs1254746791 2737 dbSNP
rs917813274 2739 dbSNP
rs913879765 2748 dbSNP
rs892245482 2752 dbSNP
rs770401939 2755 dbSNP
rs945110932 2760 dbSNP
rs1246930353 2763 dbSNP
rs1206265409 2764 dbSNP
rs1466027396 2768 dbSNP
rs1040734501 2771 dbSNP
rs900806120 2772 dbSNP
rs548430607 2773 dbSNP
rs941709659 2775 dbSNP
rs1234982251 2780 dbSNP
rs1364344708 2800 dbSNP
rs1423394347 2808 dbSNP
rs1318690451 2811 dbSNP
rs1036488417 2812 dbSNP
rs1464338822 2813 dbSNP
rs1345798052 2815 dbSNP
rs1028618572 2820 dbSNP
rs1412939866 2842 dbSNP
rs1395936907 2843 dbSNP
rs567923322 2844 dbSNP
rs7207 2845 dbSNP
rs147367220 2851 dbSNP
rs1388850795 2855 dbSNP
rs545701904 2871 dbSNP
rs1383588146 2878 dbSNP
rs961475848 2883 dbSNP
rs181699798 2884 dbSNP
rs1278356467 2887 dbSNP
rs1440309250 2904 dbSNP
rs1280533074 2906 dbSNP
rs11557072 2913 dbSNP
rs1018530714 2917 dbSNP
rs1295324844 2917 dbSNP
rs1230450614 2918 dbSNP
rs1024319360 2922 dbSNP
rs1283638380 2927 dbSNP
rs970425910 2934 dbSNP
rs1313939322 2935 dbSNP
rs968419293 2936 dbSNP
rs775020440 2945 dbSNP
rs1369035932 2947 dbSNP
rs980125351 2948 dbSNP
rs1429587031 2954 dbSNP
rs979490368 2959 dbSNP
rs926243484 2961 dbSNP
rs1296009468 2962 dbSNP
rs1259175698 2966 dbSNP
rs936245878 2969 dbSNP
rs539908221 2970 dbSNP
rs1322300881 2974 dbSNP
rs556311379 2978 dbSNP
rs527894003 2980 dbSNP
rs1206583658 2981 dbSNP
rs1307979499 2990 dbSNP
rs1289312436 2991 dbSNP
rs1226673737 2993 dbSNP
rs1031500511 2994 dbSNP
rs956834579 3002 dbSNP
rs1409387688 3004 dbSNP
rs991938521 3004 dbSNP
rs917718418 3007 dbSNP
rs576357533 3011 dbSNP
rs1486866912 3022 dbSNP
rs1187343621 3023 dbSNP
rs1262812976 3028 dbSNP
rs1267649714 3029 dbSNP
rs1462989140 3029 dbSNP
rs5812161 3029 dbSNP
rs200465929 3030 dbSNP
rs1476961032 3032 dbSNP
rs1163542334 3034 dbSNP
rs909140097 3036 dbSNP
rs913379191 3037 dbSNP
rs77633443 3038 dbSNP
rs1249405552 3043 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084040. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep1 HITS-CLIP data was present in GSM1084042. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep2 HITS-CLIP data was present in GSM1084043. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep2 HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001159508 | 3UTR | CUUUGGGAGGCCGAGGCAGGUGGAUCACGAGGUCAGGAGUUCAAGACCAGCCUGGCCAAGAUGGUAAAACCUCGUCUCUACUAAAAAUACAAAAAUUAGCCAGGUGUGGUGGCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_002225 | 3UTR | GCACAGUGACUCAUGCCUGUAAUCCCAACACUUUGGGAGGCCGAGGCAGGUGGAUCACGAGGUCAGGAGUUCAAGACCAGCCUGGCCAAGAUGGUAAAACCUCGUCUCUACUAAAAAUACAAAAAUUAGCCAGGUGUGGUGGCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084040
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep1
Location of target site ENST00000249760.2 | 3UTR | AGAUGGGUGGAUCACCUGAGGUCAGGAGUUCAAGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084042
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep2
Location of target site ENST00000249760.2 | 3UTR | AGAUGGGUGGAUCACCUGAGGUCAGGAGUUCAAGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084043
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep2
Location of target site ENST00000249760.2 | 3UTR | GGCAGGUGGAUCACGAGGUCAGGAGUUCAAGACCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000249760.2 | 3UTR | AUGGGUGGAUCACCUGAGGUCAGGAGUUCAAGACCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000249760.2 | 3UTR | GAUGGGUGGAUCACCUGAGGUCAGGAGUUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
133 hsa-miR-4680-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT378771 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT393867 ZDHHC21 zinc finger DHHC-type containing 21 2 4
MIRT446684 C2CD2 C2 calcium dependent domain containing 2 2 2
MIRT447600 MRPL3 mitochondrial ribosomal protein L3 2 2
MIRT450708 RNF152 ring finger protein 152 2 2
MIRT450784 PAPOLG poly(A) polymerase gamma 2 2
MIRT454623 COL23A1 collagen type XXIII alpha 1 chain 2 8
MIRT461620 PTCD3 pentatricopeptide repeat domain 3 2 2
MIRT462695 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT475530 HOXA3 homeobox A3 2 8
MIRT475739 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT489676 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT490610 SLC47A1 solute carrier family 47 member 1 2 2
MIRT493628 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT496152 RPS15A ribosomal protein S15a 2 2
MIRT499232 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT501496 PRICKLE2 prickle planar cell polarity protein 2 2 2
MIRT507163 GAS2L3 growth arrest specific 2 like 3 2 2
MIRT512389 MTRNR2L1 MT-RNR2-like 1 2 4
MIRT514626 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT517474 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT525332 CNGB1 cyclic nucleotide gated channel beta 1 2 2
MIRT526685 BAK1 BCL2 antagonist/killer 1 2 2
MIRT527317 CCR2 C-C motif chemokine receptor 2 2 2
MIRT527608 EYS eyes shut homolog (Drosophila) 2 2
MIRT528794 RAB32 RAB32, member RAS oncogene family 2 2
MIRT531048 TIPARP TCDD inducible poly(ADP-ribose) polymerase 2 2
MIRT532254 TBPL2 TATA-box binding protein like 2 2 2
MIRT533801 TMED7 transmembrane p24 trafficking protein 7 2 4
MIRT535887 MLEC malectin 2 2
MIRT540704 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT544645 PHF8 PHD finger protein 8 2 4
MIRT545760 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT555310 PPP2R5C protein phosphatase 2 regulatory subunit B'gamma 2 2
MIRT555877 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 4
MIRT559507 ARID5B AT-rich interaction domain 5B 2 2
MIRT560448 SLC30A7 solute carrier family 30 member 7 2 2
MIRT561262 ZIK1 zinc finger protein interacting with K protein 1 2 2
MIRT561795 PAWR pro-apoptotic WT1 regulator 2 2
MIRT567007 KLHL15 kelch like family member 15 2 2
MIRT569298 SURF6 surfeit 6 2 2
MIRT570606 MTRNR2L11 MT-RNR2-like 11 2 2
MIRT572888 ADCY2 adenylate cyclase 2 2 2
MIRT573119 ADAMTS18 ADAM metallopeptidase with thrombospondin type 1 motif 18 2 2
MIRT608332 ZNF670 zinc finger protein 670 2 6
MIRT614942 KCNK5 potassium two pore domain channel subfamily K member 5 2 2
MIRT615324 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT618441 ZNF800 zinc finger protein 800 2 2
MIRT620110 HARBI1 harbinger transposase derived 1 2 2
MIRT626008 ZNF517 zinc finger protein 517 2 2
MIRT626626 SLC30A6 solute carrier family 30 member 6 2 2
MIRT627842 POU3F1 POU class 3 homeobox 1 2 2
MIRT628386 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT629305 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT629864 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT630444 IDE insulin degrading enzyme 2 2
MIRT631854 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT633173 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT633477 ZNF724P zinc finger protein 724 2 2
MIRT634395 PLSCR1 phospholipid scramblase 1 2 2
MIRT635538 TRIM72 tripartite motif containing 72 2 2
MIRT635821 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT636169 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636797 CYB5D1 cytochrome b5 domain containing 1 2 2
MIRT637952 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT645136 HES2 hes family bHLH transcription factor 2 2 2
MIRT645667 ADK adenosine kinase 2 2
MIRT646148 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT647004 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 2 2
MIRT648187 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT650090 TERF2 telomeric repeat binding factor 2 2 2
MIRT650329 RTN2 reticulon 2 2 2
MIRT654224 RNF165 ring finger protein 165 2 2
MIRT654545 RAB1A RAB1A, member RAS oncogene family 2 2
MIRT656457 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT656828 KLF8 Kruppel like factor 8 2 2
MIRT657112 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT657930 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT659375 CREG2 cellular repressor of E1A stimulated genes 2 2 2
MIRT659833 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT662108 LACTB lactamase beta 2 4
MIRT662789 TBC1D25 TBC1 domain family member 25 2 2
MIRT669501 ARL3 ADP ribosylation factor like GTPase 3 2 2
MIRT669759 ZNF101 zinc finger protein 101 2 4
MIRT669800 GAN gigaxonin 2 2
MIRT670050 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT670299 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670388 EMP2 epithelial membrane protein 2 2 2
MIRT672862 C22orf29 retrotransposon Gag like 10 2 2
MIRT672890 FXN frataxin 2 2
MIRT673210 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT674001 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT674163 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674502 TIRAP TIR domain containing adaptor protein 2 2
MIRT675470 NUBPL nucleotide binding protein like 2 2
MIRT675671 TMOD2 tropomodulin 2 2 2
MIRT676006 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676074 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676386 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676764 SNX2 sorting nexin 2 2 2
MIRT676896 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT676978 ZNF708 zinc finger protein 708 2 2
MIRT677236 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677369 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT677464 PDLIM3 PDZ and LIM domain 3 2 2
MIRT678081 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678093 ATCAY ATCAY, caytaxin 2 2
MIRT678324 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678417 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678521 ZNF347 zinc finger protein 347 2 2
MIRT678700 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT678829 PDE6A phosphodiesterase 6A 2 2
MIRT679991 RUNDC1 RUN domain containing 1 2 2
MIRT680751 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT681249 ZNF383 zinc finger protein 383 2 2
MIRT681422 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT681948 SLC19A3 solute carrier family 19 member 3 2 2
MIRT689278 C5AR2 complement component 5a receptor 2 2 2
MIRT690389 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT691845 OSCAR osteoclast associated, immunoglobulin-like receptor 2 2
MIRT693863 IYD iodotyrosine deiodinase 2 2
MIRT696002 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT701930 MLLT1 MLLT1, super elongation complex subunit 2 2
MIRT702341 KLHL7 kelch like family member 7 2 2
MIRT703557 FKBP14 FK506 binding protein 14 2 2
MIRT705033 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT706341 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT709671 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT711212 EFHB EF-hand domain family member B 2 2
MIRT718342 PURA purine rich element binding protein A 2 2
MIRT722755 SIRPB2 signal regulatory protein beta 2 2 2
MIRT723535 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 2
MIRT724498 BFAR bifunctional apoptosis regulator 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4680-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

Error report submission