pre-miRNA Information
pre-miRNA hsa-mir-412   
Genomic Coordinates chr14: 101065447 - 101065537
Synonyms MIRN412, hsa-mir-412, MIR412
Description Homo sapiens miR-412 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-412-3p
Sequence 54| ACUUCACCUGGUCCACUAGCCGU |76
Evidence Not_experimental
Experiments
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
rs61992671 18 GWAS
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs369997462 1 dbSNP
rs1439693090 7 dbSNP
rs1301668924 11 dbSNP
rs534204576 13 dbSNP
rs775386036 14 dbSNP
rs762832140 15 dbSNP
rs1203323285 16 dbSNP
rs61992671 18 dbSNP
rs1022012324 19 dbSNP
rs1207609936 20 dbSNP
rs139967426 21 dbSNP
rs539487075 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZC3H13   
Synonyms KIAA0853
Description zinc finger CCCH-type containing 13
Transcript NM_015070   
Expression
Putative miRNA Targets on ZC3H13
3'UTR of ZC3H13
(miRNA target sites are highlighted)
>ZC3H13|NM_015070|3'UTR
   1 CTATATAATGTCTGTTAACCATTTAAGATGCCATCTGAAGGGGATTCTGATCTGTTCTTATGTAGCACTTAACACTGTGT
  81 AGAAACTATTTTTTGAGAAATCATTTTATAATCATTATTTAACCCTCATGGTCAAAGTTTCTCTTTAAAATTTATTTTGA
 161 GAAGAAGAGTTATCCCACAGAAAAGTTGGGAAAAGAGTACAATGACCTTTTTGTATGAAAATTACTTATTAACAGGCCAG
 241 GCGTGGTGTTGCATGTCTGTAGTCACAGCTACTCAGGGAGGTTGAGGCAGCAGGATTGCTGGAGCCCAGGAAATTGAGGC
 321 TGCAGTGAGCCATGATTGAGCCACCACACTCCAACCTAGGTGACAGAGCAAGACCCTGTCTCAAAAAAAAAAAAACAAAT
 401 TAACCAATAAGTTCTAATATCAAAGTGCTCAGTGGTTTGCCCTTGGCTAAATGAAGCAGAGCCAGGAAAAACAGACTACA
 481 TATTTTTCATGTCTAAAGAAATTGGGTATTTTGGCAGCCCTTTCCCCTAGACATCTACCCAAATGCAGGTGTGTAGGTTG
 561 AGTCTTTAACAAAGTGATTAAGAGCTTGGTCTGTAAGGCCGGATGATCTGGATTTCAGTAGGCACACCACTTACTGGCTA
 641 TTACTTAATCTGTGTGTTAGTGTCATCATCTGTAAGTCAGGAATAATCATACCACCAACTTCCTATGGTAATTAGGAGCA
 721 AATGAGTTATTACAGGCAAAACACTTAGAACAGTTCCTGGCATATAGTAATACCCAATAAATATTAACTGCTACTTTGAA
 801 AATATCCTATCACGCTGATTTTTGACCTCACTGCAGCAATTTTCAGTTATTCCAGATTATCTAGCTTATGGATTCTGGTG
 881 GTAGGGGTTGTTTGGTTTTGGTTTTCACTGTCTCTGTCTCATCTAGTACCTACCTTAGTTTATTTTGCAACTTACTAATA
 961 CTTTATTAATGGGGAGGGACGAGTAGATGGTAAAAAGAAGGAAAAGGAGGTAAAAGGTGAAAGGAACAACATTAATTAAC
1041 AATTTTACGTCATGTCCCTGGACATAAAAGTTTAGTTAGTATTAAATTTTTCACTAATACAAAATAAAAAAATATTGTTT
1121 TATGAGTTTTATGAATTCATGCCCTTCCTTTACTCTATTAGCATAAGCAGTAAATTTTTTTATTTTAATATAGCCCAATA
1201 AACCTAGAGTATACATGTACAAAATACATATAATTGTTAACGTGTATTAACCGAAAAATGACCCAAGACTTAGTTCTTGC
1281 CCTACTGTATCTGCCTTGTTTGGTTGGTTCTGTGACCTTAAGCAAATAACTCCTGTGAGCCTCAATTTTATTTGTAAAGT
1361 GATGGAATAAAACCCCTAAAATCTTACCCACCTCTAAAGATATTTGTTTCTGTGACCTTTTGCTAGTAGCATTTCAAGTT
1441 AAAATCTGGTTTGATTTTGCTACCCATGAAATACAGTTCGGCCCTTACTTATTGATGACTTAACCTAAACAGTGAAAATA
1521 TGCACTGTAAAGGGTGGGGTGATGTGGCTTAACAATCAGACTTCTTCTATTTTTGCTGCTATGGTGGTTGTATTAGAGAA
1601 CTGATGTATTATCTTGAATAAAGACTTTGTCTTGTTTACTGCC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugccgaUCACC-UGGUCCACUUca 5'
                :| || |  |||||||  
Target 5' ggaaaaGGAGGTAAAAGGTGAAag 3'
1000 - 1023 129.00 -12.30
2
miRNA  3' ugccgAUCACCUGGUCCACUUCa 5'
               ||  ||:: :||||| | 
Target 5' cactgTAAAGGGTGGGGTGATGt 3'
1523 - 1545 122.00 -14.10
3
miRNA  3' ugccgaucaccUGG-UCCACU-UCa 5'
                     ||| |||||| || 
Target 5' accacactccaACCTAGGTGACAGa 3'
343 - 367 120.00 -10.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30167866 12 COSMIC
COSN30162302 19 COSMIC
COSN30509545 95 COSMIC
COSN31525868 97 COSMIC
COSN30759015 101 COSMIC
COSN26811736 109 COSMIC
COSN30510318 126 COSMIC
COSN30510324 127 COSMIC
COSN5338721 208 COSMIC
COSN25589193 222 COSMIC
COSN15000961 814 COSMIC
COSN18932613 837 COSMIC
COSN25688340 1115 COSMIC
COSN22569819 1168 COSMIC
COSN21956404 1553 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs752580267 3 dbSNP
rs543766875 5 dbSNP
rs1250609456 8 dbSNP
rs759972474 8 dbSNP
rs1188442673 9 dbSNP
rs759083901 10 dbSNP
rs1245981075 12 dbSNP
rs1214062501 16 dbSNP
rs753339302 21 dbSNP
rs766109181 30 dbSNP
rs773634128 31 dbSNP
rs1217516264 33 dbSNP
rs772289451 34 dbSNP
rs762407472 37 dbSNP
rs775049796 41 dbSNP
rs941656346 42 dbSNP
rs886226973 43 dbSNP
rs1442034970 49 dbSNP
rs374338975 51 dbSNP
rs1198083948 52 dbSNP
rs933047272 54 dbSNP
rs1375680361 55 dbSNP
rs1476284004 68 dbSNP
rs942292446 72 dbSNP
rs1170920439 77 dbSNP
rs1422529296 79 dbSNP
rs745521527 81 dbSNP
rs923454204 83 dbSNP
rs974911742 88 dbSNP
rs1387790958 110 dbSNP
rs1323521134 120 dbSNP
rs370085373 124 dbSNP
rs914667532 128 dbSNP
rs1279070930 142 dbSNP
rs925520702 145 dbSNP
rs1217046022 150 dbSNP
rs1039734372 152 dbSNP
rs942721829 169 dbSNP
rs1177639726 170 dbSNP
rs1209114049 173 dbSNP
rs763604917 185 dbSNP
rs530954200 193 dbSNP
rs1212192274 197 dbSNP
rs17350833 200 dbSNP
rs1476605082 202 dbSNP
rs913872103 206 dbSNP
rs1368503122 207 dbSNP
rs992653019 215 dbSNP
rs960797105 218 dbSNP
rs1237959924 224 dbSNP
rs1356201008 225 dbSNP
rs376876599 228 dbSNP
rs919164832 229 dbSNP
rs1395862830 235 dbSNP
rs536405013 242 dbSNP
rs574837255 243 dbSNP
rs1340301125 246 dbSNP
rs1398340607 248 dbSNP
rs1315134557 254 dbSNP
rs1016041148 262 dbSNP
rs1012696999 266 dbSNP
rs553476269 270 dbSNP
rs958433463 271 dbSNP
rs969986819 280 dbSNP
rs1304922333 290 dbSNP
rs1035398477 294 dbSNP
rs1262122128 296 dbSNP
rs1487206477 301 dbSNP
rs1415965351 310 dbSNP
rs1256466645 313 dbSNP
rs1422720848 322 dbSNP
rs1016185696 324 dbSNP
rs1184850443 331 dbSNP
rs1002950597 351 dbSNP
rs187075902 364 dbSNP
rs1042329540 368 dbSNP
rs1157533335 374 dbSNP
rs1360234382 375 dbSNP
rs1011712752 376 dbSNP
rs893280764 382 dbSNP
rs1310593939 394 dbSNP
rs1365244184 394 dbSNP
rs1039829780 395 dbSNP
rs1285254538 396 dbSNP
rs540293979 396 dbSNP
rs942816925 396 dbSNP
rs1212050850 397 dbSNP
rs149709495 398 dbSNP
rs1482689971 404 dbSNP
rs1047368941 407 dbSNP
rs997688195 416 dbSNP
rs901580803 417 dbSNP
rs1239424507 424 dbSNP
rs1439797145 426 dbSNP
rs1179788848 430 dbSNP
rs1253845008 431 dbSNP
rs1039636078 435 dbSNP
rs552126878 441 dbSNP
rs929926812 444 dbSNP
rs537366313 446 dbSNP
rs1178765819 447 dbSNP
rs919187435 455 dbSNP
rs943539477 467 dbSNP
rs1465675099 469 dbSNP
rs1183322320 470 dbSNP
rs1301351376 480 dbSNP
rs1485958863 489 dbSNP
rs1262377438 490 dbSNP
rs1447680026 492 dbSNP
rs925574683 503 dbSNP
rs1043965221 516 dbSNP
rs945592050 524 dbSNP
rs374370250 538 dbSNP
rs913908474 546 dbSNP
rs1301632326 549 dbSNP
rs1207524148 551 dbSNP
rs1259643579 556 dbSNP
rs1457796027 560 dbSNP
rs1197532860 568 dbSNP
rs1238090990 580 dbSNP
rs569978304 600 dbSNP
rs771074730 600 dbSNP
rs548502917 601 dbSNP
rs796371404 611 dbSNP
rs150543017 619 dbSNP
rs991315107 624 dbSNP
rs1174524220 626 dbSNP
rs41284151 638 dbSNP
rs1035808592 639 dbSNP
rs1330688448 639 dbSNP
rs926710108 640 dbSNP
rs866438582 658 dbSNP
rs980381648 664 dbSNP
rs1217305740 672 dbSNP
rs1279695844 674 dbSNP
rs1318230220 675 dbSNP
rs547505765 676 dbSNP
rs1255530035 677 dbSNP
rs967420708 692 dbSNP
rs532086038 695 dbSNP
rs1247857452 699 dbSNP
rs1016070418 705 dbSNP
rs1488344128 714 dbSNP
rs1197781755 724 dbSNP
rs182435057 741 dbSNP
rs1397636677 745 dbSNP
rs192116427 747 dbSNP
rs1478231162 753 dbSNP
rs531646013 756 dbSNP
rs1386536336 757 dbSNP
rs1417403196 759 dbSNP
rs1006162142 765 dbSNP
rs1165355063 773 dbSNP
rs1407200093 773 dbSNP
rs1288892379 776 dbSNP
rs1020552677 778 dbSNP
rs1011805970 782 dbSNP
rs1366278537 794 dbSNP
rs1299748642 804 dbSNP
rs1166909673 805 dbSNP
rs1340903169 807 dbSNP
rs893375631 809 dbSNP
rs561117695 811 dbSNP
rs45594237 813 dbSNP
rs997173534 814 dbSNP
rs1291217525 824 dbSNP
rs763358784 832 dbSNP
rs1321577973 833 dbSNP
rs187243134 849 dbSNP
rs901631797 850 dbSNP
rs1220908073 852 dbSNP
rs1191382580 853 dbSNP
rs1488833371 856 dbSNP
rs1448624655 860 dbSNP
rs1193187446 864 dbSNP
rs553667119 865 dbSNP
rs1473815013 875 dbSNP
rs1182578579 878 dbSNP
rs1413184588 882 dbSNP
rs1422599890 901 dbSNP
rs1160417959 913 dbSNP
rs1360880584 916 dbSNP
rs374272761 917 dbSNP
rs1315754676 919 dbSNP
rs930004390 940 dbSNP
rs1448313749 946 dbSNP
rs897173682 950 dbSNP
rs1038367396 951 dbSNP
rs773554826 956 dbSNP
rs867056885 972 dbSNP
rs183641594 974 dbSNP
rs1214773398 975 dbSNP
rs1354824557 975 dbSNP
rs192132131 976 dbSNP
rs937137894 978 dbSNP
rs1373201894 980 dbSNP
rs928418173 981 dbSNP
rs1180411559 997 dbSNP
rs1380889213 1009 dbSNP
rs770353313 1010 dbSNP
rs981574008 1016 dbSNP
rs756814190 1025 dbSNP
rs1156659924 1026 dbSNP
rs1404085569 1035 dbSNP
rs762242224 1040 dbSNP
rs578135642 1045 dbSNP
rs1333119420 1047 dbSNP
rs1403235141 1048 dbSNP
rs1020398766 1049 dbSNP
rs1312090242 1054 dbSNP
rs1378367865 1058 dbSNP
rs776585812 1062 dbSNP
rs867488775 1064 dbSNP
rs1295678679 1066 dbSNP
rs957655501 1071 dbSNP
rs1278249345 1081 dbSNP
rs537005140 1090 dbSNP
rs1385726980 1096 dbSNP
rs1238703667 1101 dbSNP
rs1457209645 1103 dbSNP
rs768455363 1113 dbSNP
rs559635902 1115 dbSNP
rs1388199972 1121 dbSNP
rs1327474058 1135 dbSNP
rs1018439583 1139 dbSNP
rs926733593 1141 dbSNP
rs1478260405 1147 dbSNP
rs1399316331 1148 dbSNP
rs1168215279 1157 dbSNP
rs980858722 1158 dbSNP
rs1373509636 1170 dbSNP
rs1426847215 1176 dbSNP
rs1198331907 1180 dbSNP
rs1007018778 1182 dbSNP
rs187272796 1190 dbSNP
rs1398927763 1193 dbSNP
rs909060858 1198 dbSNP
rs1327463499 1200 dbSNP
rs984610034 1211 dbSNP
rs994689819 1218 dbSNP
rs950716121 1221 dbSNP
rs563357242 1228 dbSNP
rs976190091 1231 dbSNP
rs796144879 1241 dbSNP
rs747224608 1242 dbSNP
rs780362033 1243 dbSNP
rs772398024 1245 dbSNP
rs903581749 1252 dbSNP
rs1269439317 1253 dbSNP
rs1451955401 1260 dbSNP
rs1197988983 1279 dbSNP
rs887702177 1282 dbSNP
rs1022446372 1284 dbSNP
rs1055693471 1285 dbSNP
rs745713447 1289 dbSNP
rs937209916 1301 dbSNP
rs1166638618 1320 dbSNP
rs1255904856 1326 dbSNP
rs1393585559 1332 dbSNP
rs1387701612 1344 dbSNP
rs778842388 1345 dbSNP
rs1231948883 1363 dbSNP
rs928481546 1364 dbSNP
rs1402039970 1369 dbSNP
rs981284529 1373 dbSNP
rs1328813804 1376 dbSNP
rs892749997 1387 dbSNP
rs757261657 1391 dbSNP
rs912980218 1396 dbSNP
rs753763520 1403 dbSNP
rs1375627272 1404 dbSNP
rs1489166055 1416 dbSNP
rs1329056361 1420 dbSNP
rs989775476 1426 dbSNP
rs142553441 1435 dbSNP
rs566291788 1437 dbSNP
rs1171906435 1445 dbSNP
rs1464645192 1448 dbSNP
rs1368541381 1457 dbSNP
rs538439310 1459 dbSNP
rs547646800 1466 dbSNP
rs1045059359 1470 dbSNP
rs1364073922 1471 dbSNP
rs941455225 1479 dbSNP
rs532258723 1480 dbSNP
rs148415761 1485 dbSNP
rs777183144 1492 dbSNP
rs1256115719 1499 dbSNP
rs919053626 1505 dbSNP
rs541226432 1510 dbSNP
rs976029236 1516 dbSNP
rs755692129 1521 dbSNP
rs1350623075 1526 dbSNP
rs1017236480 1555 dbSNP
rs985744987 1560 dbSNP
rs1281865305 1562 dbSNP
rs549806131 1563 dbSNP
rs1016997350 1569 dbSNP
rs752127679 1569 dbSNP
rs531436847 1572 dbSNP
rs74936566 1574 dbSNP
rs34818778 1575 dbSNP
rs560854884 1581 dbSNP
rs767216632 1588 dbSNP
rs1009725559 1592 dbSNP
rs1441929291 1594 dbSNP
rs1159559846 1596 dbSNP
rs573716229 1600 dbSNP
rs907110454 1601 dbSNP
rs1304841626 1606 dbSNP
rs1046015000 1607 dbSNP
rs542940385 1628 dbSNP
rs201980829 1634 dbSNP
rs1334589078 1639 dbSNP
rs1379107508 1644 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000242848.4 | 3UTR | AAAAGAGUGAAGAAUUUUGAUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000242848.4 | 3UTR | AAAAGAGUGAAGAAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000242848.4 | 3UTR | AAAAGAGUGAAGAAUUUUGAUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
138 hsa-miR-412-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT005780 ACVR1C activin A receptor type 1C 1 1
MIRT062013 YOD1 YOD1 deubiquitinase 2 2
MIRT345112 ATXN7L3 ataxin 7 like 3 2 2
MIRT383735 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 2
MIRT396956 CELF1 CUGBP Elav-like family member 1 2 2
MIRT439280 XIAP X-linked inhibitor of apoptosis 1 1
MIRT439313 VAT1 vesicle amine transport 1 1 1
MIRT439375 TUBA1A tubulin alpha 1a 1 1
MIRT439418 TMOD1 tropomodulin 1 1 1
MIRT439503 SURF4 surfeit 4 1 1
MIRT439563 SON SON DNA binding protein 1 1
MIRT439598 SLC3A2 solute carrier family 3 member 2 1 1
MIRT439670 SETD1B SET domain containing 1B 1 1
MIRT439767 RMND5A required for meiotic nuclear division 5 homolog A 1 1
MIRT439922 PPL periplakin 1 1
MIRT439947 PLEKHA6 pleckstrin homology domain containing A6 1 1
MIRT439952 PLCB4 phospholipase C beta 4 1 1
MIRT439961 PKD1 polycystin 1, transient receptor potential channel interacting 1 1
MIRT440005 PEG3 paternally expressed 3 1 1
MIRT440061 OSBPL8 oxysterol binding protein like 8 1 1
MIRT440166 MYH14 myosin heavy chain 14 1 1
MIRT440276 MAPK8IP1 mitogen-activated protein kinase 8 interacting protein 1 1 1
MIRT440437 IPO13 importin 13 1 1
MIRT440441 INTS3 integrator complex subunit 3 1 1
MIRT440448 INS insulin 1 1
MIRT440461 IGF2R insulin like growth factor 2 receptor 1 1
MIRT440472 IARS isoleucyl-tRNA synthetase 1 1
MIRT440530 GUCY1A3 guanylate cyclase 1 soluble subunit alpha 1 1
MIRT440542 GOLGA2 golgin A2 1 1
MIRT440569 GIGYF1 GRB10 interacting GYF protein 1 1 1
MIRT440608 FTSJD2 cap methyltransferase 1 1 1
MIRT440750 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 1 1
MIRT440781 DOT1L DOT1 like histone lysine methyltransferase 1 1
MIRT440804 DNAJA4 DnaJ heat shock protein family (Hsp40) member A4 1 1
MIRT440867 CSDE1 cold shock domain containing E1 1 1
MIRT440890 CPEB4 cytoplasmic polyadenylation element binding protein 4 1 1
MIRT440917 COL1A1 collagen type I alpha 1 chain 1 1
MIRT440967 CDH22 cadherin 22 1 1
MIRT440968 CDH2 cadherin 2 1 1
MIRT441024 CALR calreticulin 1 1
MIRT441278 ACTB actin beta 1 1
MIRT448421 TNFAIP3 TNF alpha induced protein 3 2 2
MIRT462833 BCL3 B-cell CLL/lymphoma 3 2 2
MIRT465062 TSR1 TSR1, ribosome maturation factor 2 2
MIRT476050 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT485318 MZT1 mitotic spindle organizing protein 1 2 4
MIRT493584 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 6
MIRT494567 BAK1 BCL2 antagonist/killer 1 2 2
MIRT497393 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT503250 ZNF257 zinc finger protein 257 2 10
MIRT503656 ZNF138 zinc finger protein 138 2 10
MIRT505882 RNF219 ring finger protein 219 2 2
MIRT507525 DSTN destrin, actin depolymerizing factor 2 4
MIRT510663 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT514682 ZNF701 zinc finger protein 701 2 4
MIRT515370 ZNF208 zinc finger protein 208 2 6
MIRT525237 KCNJ12 potassium voltage-gated channel subfamily J member 12 2 2
MIRT527963 MTAP methylthioadenosine phosphorylase 2 2
MIRT528482 STAMBPL1 STAM binding protein like 1 2 2
MIRT529909 C1orf64 steroid receptor associated and regulated protein 2 4
MIRT531558 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT532234 KLF2 Kruppel like factor 2 2 4
MIRT532480 HOXA13 homeobox A13 2 2
MIRT535544 P2RY2 purinergic receptor P2Y2 2 2
MIRT547311 NR1D2 nuclear receptor subfamily 1 group D member 2 2 2
MIRT551795 ZNF117 zinc finger protein 117 2 4
MIRT554939 RAP1A RAP1A, member of RAS oncogene family 2 2
MIRT558171 EIF5A2 eukaryotic translation initiation factor 5A2 2 2
MIRT568771 LY6K lymphocyte antigen 6 family member K 2 2
MIRT570766 ZNF99 zinc finger protein 99 2 2
MIRT572405 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT573396 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT610403 RXRB retinoid X receptor beta 2 2
MIRT610886 SCN8A sodium voltage-gated channel alpha subunit 8 2 2
MIRT611197 TMEM105 transmembrane protein 105 2 2
MIRT611244 ZNF550 zinc finger protein 550 2 2
MIRT615669 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 4
MIRT617974 DOCK4 dedicator of cytokinesis 4 2 2
MIRT619150 ZNF326 zinc finger protein 326 2 2
MIRT619608 MKKS McKusick-Kaufman syndrome 2 2
MIRT621053 DGKD diacylglycerol kinase delta 2 2
MIRT623665 HRK harakiri, BCL2 interacting protein 2 2
MIRT624883 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT624939 MARCH2 membrane associated ring-CH-type finger 2 2 2
MIRT634198 TMOD2 tropomodulin 2 2 4
MIRT636727 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT637741 POLR3K RNA polymerase III subunit K 2 2
MIRT638002 ZC3H13 zinc finger CCCH-type containing 13 2 2
MIRT640395 ZNF785 zinc finger protein 785 2 2
MIRT640505 ANTXR1 anthrax toxin receptor 1 2 2
MIRT641293 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT641863 STOML1 stomatin like 1 2 2
MIRT642600 C14orf180 chromosome 14 open reading frame 180 2 2
MIRT642895 CASP1 caspase 1 2 2
MIRT643967 FHL2 four and a half LIM domains 2 2 4
MIRT645237 KCTD12 potassium channel tetramerization domain containing 12 2 2
MIRT646621 CENPL centromere protein L 2 2
MIRT648620 CYB561A3 cytochrome b561 family member A3 2 2
MIRT648908 ZNF551 zinc finger protein 551 2 2
MIRT649439 HIBADH 3-hydroxyisobutyrate dehydrogenase 2 2
MIRT650637 LTF lactotransferrin 2 2
MIRT650971 STARD3NL STARD3 N-terminal like 2 2
MIRT651067 ZNF518B zinc finger protein 518B 2 4
MIRT652384 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT653958 SEPN1 selenoprotein N 2 2
MIRT656885 KIF1C kinesin family member 1C 2 2
MIRT657965 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT658080 FOXR2 forkhead box R2 2 2
MIRT662570 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT663089 METTL10 EEF1A lysine methyltransferase 2 2 2
MIRT683705 ZNF195 zinc finger protein 195 2 2
MIRT683835 ZNF682 zinc finger protein 682 2 2
MIRT706811 APOL4 apolipoprotein L4 2 2
MIRT707575 DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 2 2
MIRT708606 ZNF260 zinc finger protein 260 2 2
MIRT708859 TMSB4X thymosin beta 4, X-linked 2 2
MIRT709861 PDIK1L PDLIM1 interacting kinase 1 like 2 2
MIRT709987 RBM41 RNA binding motif protein 41 2 2
MIRT710098 KPNA5 karyopherin subunit alpha 5 2 2
MIRT710211 ENAH ENAH, actin regulator 2 2
MIRT710868 B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 2 2
MIRT710986 SUSD5 sushi domain containing 5 2 2
MIRT711460 RNF145 ring finger protein 145 2 2
MIRT712302 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT713609 SYTL4 synaptotagmin like 4 2 2
MIRT713789 MAK16 MAK16 homolog 2 2
MIRT715480 MYO9B myosin IXB 2 2
MIRT716328 POU5F1 POU class 5 homeobox 1 2 2
MIRT717252 TMEM246 transmembrane protein 246 2 2
MIRT718077 CLIC5 chloride intracellular channel 5 2 2
MIRT718463 EED embryonic ectoderm development 2 2
MIRT718645 NKPD1 NTPase KAP family P-loop domain containing 1 2 2
MIRT718982 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT721078 RPS9 ribosomal protein S9 2 2
MIRT721419 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT721863 CENPJ centromere protein J 2 2
MIRT722492 PNKD paroxysmal nonkinesigenic dyskinesia 2 2
MIRT723391 CALN1 calneuron 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-412 Gemcitabine approved 60750 Northern blot Mz-ChA-1 human cholangiocarcinoma cell lines 16762633 2006 down-regulated
miR-412 Progesterone approved 5994 Microarray Breast cancer 22330642 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-412 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-412 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-412-3p Verapamil 2520 NSC272366 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (RKO)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (HCT-116)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved sensitive High Anaplastic Thyroid Cancer tissue
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM47)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM43)
hsa-miR-412-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-412-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-412-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (Panc1-GR1)
hsa-miR-412-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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