pre-miRNA Information
pre-miRNA hsa-mir-3152   
Genomic Coordinates chr9: 18573306 - 18573379
Description Homo sapiens miR-3152 stem-loop
Comment Berezikov et al. proposed this sequence as a miRNA candidate based on the RAKE method .
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3152-5p
Sequence 11| AUUGCCUCUGUUCUAACACAAG |32
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1019691326 2 dbSNP
rs1282676806 8 dbSNP
rs762305650 11 dbSNP
rs1364318615 12 dbSNP
rs556364307 18 dbSNP
rs1002755159 19 dbSNP
rs1238555909 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol POU3F2   
Synonyms BRN2, N-Oct3, OCT7, OTF-7, OTF7, POUF3, brn-2, oct-7
Description POU class 3 homeobox 2
Transcript NM_005604   
Expression
Putative miRNA Targets on POU3F2
3'UTR of POU3F2
(miRNA target sites are highlighted)
>POU3F2|NM_005604|3'UTR
   1 ACTCGAGCTGGGGGAGGGGCAGAGCGCGGGGCTCCCCCTCCCCTTCGGTCCTTGGCCCTTTCCCGGCCCTCTTGTTCCCT
  81 CTCTAACTTCTGATTGTTCTTTTATTTTTAATTATTATTTCCCCGTCCCTTAAAAAGACAAAAAAAATAAGGCAAAAGGA
 161 AAGCAACTAAGACACTGGACTATCCTTTAAAGGTAGCAGGTGTAATGATGTGTTTTGACCTTTGCAGGCGAGTAACCAGG
 241 CAATGGAGTGGAGTGTCTCCTGGAGAGAGTGAGGAGAGTGTGTGATAGCTAGAAAGAGAGAGAGACAGAGAGATGGCAAG
 321 CACTGAGATAAATACCTGGCAAAACTAAATAAATTACCAAAAAGGAAAAAAAATCCACCAAACCATGATAAACACAAAAT
 401 GCAGCTTCCTGATGCTTAGAGTTGGCACATGCTGCTGTGTTTATTTATTGTGGATTCCCATCAGGAAAGAGGAAAAAATA
 481 CACATGTTCTTTCATATAGGCAAAATTTAACCACATAAATTTGCACTGCAAGAAAATTGAAGTTTACGTGAACAAATTCA
 561 TGAGCATATTTTCTCTTTCTCCCCACCGTTAATTTGGGAGTTGCCGTTTTGGGGGATTTTGTTTTGCTTTGCTTTATTCA
 641 TCGGAGAGAGTTGAAGCCAGCTCTTGGCCACTCTCCATTTCTAATGTTCTTGTGTTGCCCCTTCTTCGTACTGTTTGTGA
 721 ACTTTGGTTACCTTCACATTCCCCTTACGAGGGTGTAACATCTATTTGTTCCTCTTACCAAAGCAAAAGGATTGGCTTCA
 801 TACAAAATAGACAATTCTCTGATTTCAGGAAATGTGCATGGTCTACCCGCTTTATCGAAGGCAAGAATCCGGTTTGGAAT
 881 ATAAAAATAAGCATTGGTTGTTCTTACCAGCCACAAAGTAAACTTCATTTTCAGGCAGTGTTTCTGGGGGAGGTTATGGA
 961 GGGAAGAAAAAAGAAAAATCGATAGTGAGTGACTGATTGCTTCATTTTATCAGGCGGGCCCATTGTGAAAGAGCTCAGGG
1041 GAAATGTGGAGGTTAAATATATTTCCAGAGTTGTCCAGCAGAAAGAAAGTGGCACTTTGAAGAGAACTAGGGAAGTACAT
1121 ATCTTCAGATATCCCTATATAGTTCTCTACCTTCAGTTTTAGTAACAATTATGAAGAATTATTTGTGCTGACAGCAGCAG
1201 TTAAACTTTGTTTCTCTAATAGCTTTTTTTTTACATAAAAAAAGACCCAGGAACTTAATAGTGTATGCATAAGACTGTGT
1281 TTTTTAGCACACAGATACCCACAGCATACACTGACGATCTCCACGCAGTAGACAGGTTTTGTCTTCACTAGCTCATTTGT
1361 TTATCAAGTCATATTTAGGGTCCCACACCCTCTTTTCCTGTAATTTATTGCAGAATACACCACTTTGACTTGGACAGCTT
1441 TCTGCCCCCTCTTTCACTAAGGAAGGCAAATGAAGTGAAAAAAAAAAATGCCATTTTCAATCCTTCCTTTCTCCCCTTTG
1521 TTAATAGTTTTAAGTGAATTTTTGACCTTATCTTAATGGAAAACGGTTAACTCCAAACACAAAAGACTCTACTGGAAAGT
1601 GTAGGTGAAAAAACTTGTAACTGTATTGAAAATAAATACCATTAAACTGTGATCAGTTAAAATTTAAAAGAAAAATCAGC
1681 ACAAAAGGGCGCTAAAAGGGAAAACACTTTTTATTAATCTTAAAAGTTTGGGGGTTTTTTTCCAGTTAGGTATTAGATAA
1761 ATTTTTATTTTAAAAAATGAAAGTCTCACTACCATAAAATTATGGTTCAGCATCAGATTAGCATTGCACTCAGTAGTCTT
1841 TAAGGTTTTAGGAAATATGCTTTATATTGTCTTTTCAAACACCTGTGATTGTTTCATTTTCCATGTTTTTGCAAGATAAA
1921 TGGTGACTTATAATGGGCATATTTATTTGCCTGTATTTCATTTCCCCCAATGAATGTCACAAGGAGATGGGCACGGAGCT
2001 GCTTCGGGTGCATCACGCTGCTCGTTCCTGAGGTATGGGAACTGGCCTTTAGTGAAGCTATCCAGAGCAGGGCAAATAGC
2081 CACTGGTAAAGGGAGGAAATGAATTTCCAGATACTTATTACCAAGTAGGTAAGGTCAGAAGCTGGAGTTCAGAGAATGTG
2161 TCTACAGCTTCTCTGACTCTTATAGGTTTACTAAGATGAAAGTTACCACTGAACCTTACCACTATGTATATATGTTTAAT
2241 ATCTGTCTTTTGAAATGCAGAAATAGTTTAAATGTTTCTTTGTCTATTTTTCTTTTTTTTTAATGCTACCCAGGGAAATA
2321 TTTTCATATCATTTTTAAGTGGCCTGCCTCAATGTATATTTATTTCTTTTGAAACAAAAAGGTTCTGGAAACTGTTTTTC
2401 TGTAGCTTTAAATGAATAGGTGAGCAAAATCTATATGGGATGTAATTTTTTTGTTCAGTCTCTTAAAAAATACTTTGTTT
2481 TGGTACATTTGGTTGTGCTTGTGGGGAAAATAAAAACGCAGAGATCCTTATATATTTATGTTAAAGTAATATTTTATTAT
2561 CTACATAAAACAGAAATGCACAATAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaacacAAUCUUGUCUCCGUUa 5'
                | ||:| ||||| || 
Target 5' ttcccaTCAGGAAAGAGGAAAa 3'
455 - 476 128.00 -9.16
2
miRNA  3' gaaCACAAUCUUGUCUCCGUUa 5'
             | | |:|:: ||:||||: 
Target 5' ctcGAGCTGGGGGAGGGGCAGa 3'
2 - 23 127.00 -15.70
3
miRNA  3' gaacACAAUCUUGUCUCCGUUa 5'
              || || || :|||| || 
Target 5' ccacTGGTA-AAGGGAGGAAAt 3'
2080 - 2100 125.00 -6.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM5635677 1 COSMIC
COSN510146 14 COSMIC
COSN8514972 28 COSMIC
COSN15625941 30 COSMIC
COSN30181920 39 COSMIC
COSN20075545 49 COSMIC
COSN25551059 65 COSMIC
COSN30137579 97 COSMIC
COSN31606874 100 COSMIC
COSN30658912 124 COSMIC
COSN17858669 140 COSMIC
COSN20103161 140 COSMIC
COSN1339218 148 COSMIC
COSN20069844 148 COSMIC
COSN15625942 172 COSMIC
COSN31480439 185 COSMIC
COSN15868232 296 COSMIC
COSN20684214 338 COSMIC
COSN20103162 374 COSMIC
COSN30532489 376 COSMIC
COSN14767756 452 COSMIC
COSN15625943 466 COSMIC
COSN28687576 555 COSMIC
COSN31546660 574 COSMIC
COSN15625944 582 COSMIC
COSN32056944 585 COSMIC
COSN30141699 595 COSMIC
COSN30536675 644 COSMIC
COSN26958528 647 COSMIC
COSN17038342 722 COSMIC
COSN30121078 818 COSMIC
COSN30124695 823 COSMIC
COSN26552042 837 COSMIC
COSN2188208 848 COSMIC
COSN7649241 872 COSMIC
COSN139694 914 COSMIC
COSN31520695 932 COSMIC
COSN8514973 947 COSMIC
COSN30117142 970 COSMIC
COSN30114212 974 COSMIC
COSN24301513 982 COSMIC
COSN9816656 1000 COSMIC
COSN29246893 1017 COSMIC
COSN15625945 1041 COSMIC
COSN31527704 1105 COSMIC
COSN30113190 1146 COSMIC
COSN31608313 1161 COSMIC
COSN31523076 1166 COSMIC
COSN9816657 1220 COSMIC
COSN31517326 1226 COSMIC
COSN23012880 1244 COSMIC
COSN30134897 1245 COSMIC
COSN23012882 1286 COSMIC
COSN24301774 1290 COSMIC
COSN30513685 1297 COSMIC
COSN31541408 1299 COSMIC
COSN30113974 1305 COSMIC
COSN17243810 1325 COSMIC
COSN31778525 1342 COSMIC
COSN31607539 1414 COSMIC
COSN31579777 1462 COSMIC
COSN15625946 1473 COSMIC
COSN20103163 1489 COSMIC
COSN30111665 1492 COSMIC
COSN30530563 1506 COSMIC
COSN30528135 1522 COSMIC
COSN8514974 1574 COSMIC
COSN30113756 1590 COSMIC
COSN30112279 1616 COSMIC
COSN30122961 1671 COSMIC
COSN7916821 1735 COSMIC
COSN30110705 1742 COSMIC
COSN25535024 1773 COSMIC
COSN30174649 1809 COSMIC
COSN24301514 1991 COSMIC
COSN30112727 2006 COSMIC
COSN28436662 2008 COSMIC
COSN30529641 2020 COSMIC
COSN6593063 2024 COSMIC
COSN8514975 2058 COSMIC
COSN31563016 2074 COSMIC
COSN30124031 2080 COSMIC
COSN30531077 2081 COSMIC
COSN31584416 2107 COSMIC
COSN6340634 2111 COSMIC
COSN31565023 2172 COSMIC
COSN30116357 2183 COSMIC
COSN30128005 2225 COSMIC
COSN31596189 2264 COSMIC
COSN30134919 2285 COSMIC
COSN30141910 2291 COSMIC
COSN26568426 2293 COSMIC
COSN31521521 2302 COSMIC
COSN31582890 2382 COSMIC
COSN30121590 2401 COSMIC
COSN30114600 2408 COSMIC
COSN30537062 2426 COSMIC
COSN30113056 2428 COSMIC
COSN30129416 2452 COSMIC
COSN23012883 2453 COSMIC
COSN31566635 2461 COSMIC
COSN30113340 2467 COSMIC
COSN31596636 2486 COSMIC
COSN30527981 2495 COSMIC
COSN30544736 2518 COSMIC
COSN30114577 2524 COSMIC
COSN20814426 2589 COSMIC
COSN15707978 2731 COSMIC
COSN27253827 2802 COSMIC
COSN9816658 2899 COSMIC
rs3823036 452 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1211225589 3 dbSNP
rs762236131 4 dbSNP
rs750728970 5 dbSNP
rs1191523401 6 dbSNP
rs1249817414 10 dbSNP
rs758669972 11 dbSNP
rs780100752 13 dbSNP
rs751701736 15 dbSNP
rs1460546676 17 dbSNP
rs1167288916 19 dbSNP
rs1395493733 20 dbSNP
rs1461245021 21 dbSNP
rs754989117 23 dbSNP
rs777913397 26 dbSNP
rs558750380 28 dbSNP
rs1295540023 29 dbSNP
rs1324125810 32 dbSNP
rs1263189861 34 dbSNP
rs764356762 34 dbSNP
rs576992478 35 dbSNP
rs778860491 37 dbSNP
rs202224147 38 dbSNP
rs556732734 39 dbSNP
rs892017618 45 dbSNP
rs575240654 47 dbSNP
rs776056411 48 dbSNP
rs1024332517 52 dbSNP
rs1010352063 56 dbSNP
rs1291392877 57 dbSNP
rs1020459537 66 dbSNP
rs1354905739 67 dbSNP
rs1313655760 68 dbSNP
rs1416920228 69 dbSNP
rs542247520 76 dbSNP
rs1394741803 78 dbSNP
rs1167747225 79 dbSNP
rs561268251 94 dbSNP
rs1375244108 96 dbSNP
rs907183875 98 dbSNP
rs764133586 110 dbSNP
rs1474558871 118 dbSNP
rs976379462 125 dbSNP
rs1034394507 126 dbSNP
rs528372381 130 dbSNP
rs1248448698 132 dbSNP
rs953391220 137 dbSNP
rs71545770 139 dbSNP
rs111620909 140 dbSNP
rs1294055653 140 dbSNP
rs199735616 140 dbSNP
rs1334153117 145 dbSNP
rs540505046 145 dbSNP
rs973178192 150 dbSNP
rs909291354 156 dbSNP
rs1402920678 159 dbSNP
rs375953848 164 dbSNP
rs777402373 177 dbSNP
rs950641807 179 dbSNP
rs1463155146 190 dbSNP
rs532298489 193 dbSNP
rs911594274 198 dbSNP
rs1395065161 203 dbSNP
rs1182086968 212 dbSNP
rs944349539 214 dbSNP
rs796934132 225 dbSNP
rs1343477039 227 dbSNP
rs1212988174 228 dbSNP
rs192443961 229 dbSNP
rs562830822 230 dbSNP
rs1029010673 233 dbSNP
rs562415325 240 dbSNP
rs1308324170 249 dbSNP
rs905805106 251 dbSNP
rs1229833467 252 dbSNP
rs1249690872 257 dbSNP
rs1240096111 260 dbSNP
rs1301746291 262 dbSNP
rs1379564665 262 dbSNP
rs1440792457 263 dbSNP
rs1480315688 263 dbSNP
rs1054604233 269 dbSNP
rs913372002 271 dbSNP
rs1398388893 274 dbSNP
rs936990096 276 dbSNP
rs946347898 279 dbSNP
rs530140606 280 dbSNP
rs1393005344 281 dbSNP
rs1054089812 295 dbSNP
rs1489976247 295 dbSNP
rs1046397178 297 dbSNP
rs892853568 298 dbSNP
rs1254740574 307 dbSNP
rs183346230 307 dbSNP
rs1445335605 319 dbSNP
rs1283729195 320 dbSNP
rs1262822965 328 dbSNP
rs1020846958 336 dbSNP
rs548264769 353 dbSNP
rs566499439 359 dbSNP
rs1278488809 361 dbSNP
rs1277066071 366 dbSNP
rs34400185 366 dbSNP
rs1055814784 371 dbSNP
rs898558389 373 dbSNP
rs998120030 376 dbSNP
rs1318455562 378 dbSNP
rs1029225427 386 dbSNP
rs1289262262 388 dbSNP
rs1172630193 406 dbSNP
rs79339339 411 dbSNP
rs1006219584 427 dbSNP
rs550938395 434 dbSNP
rs567584121 435 dbSNP
rs755154694 447 dbSNP
rs3823036 452 dbSNP
rs1019236258 453 dbSNP
rs34587175 457 dbSNP
rs1341597293 458 dbSNP
rs1193934013 459 dbSNP
rs965708424 460 dbSNP
rs1246778959 465 dbSNP
rs974375584 469 dbSNP
rs1255594237 470 dbSNP
rs1210459980 481 dbSNP
rs1293982550 482 dbSNP
rs1357968242 484 dbSNP
rs755415468 494 dbSNP
rs971243217 496 dbSNP
rs748237966 498 dbSNP
rs927230186 512 dbSNP
rs1353035003 520 dbSNP
rs1311882273 532 dbSNP
rs1415085608 539 dbSNP
rs1360648609 544 dbSNP
rs990293179 549 dbSNP
rs772068578 551 dbSNP
rs1054010610 556 dbSNP
rs868426743 566 dbSNP
rs946205439 583 dbSNP
rs1045984748 584 dbSNP
rs928858391 585 dbSNP
rs937356531 587 dbSNP
rs1187492326 588 dbSNP
rs1055700893 591 dbSNP
rs1239558948 599 dbSNP
rs898484848 601 dbSNP
rs1202815679 603 dbSNP
rs1041452937 605 dbSNP
rs1274251694 607 dbSNP
rs995634859 611 dbSNP
rs1047584991 614 dbSNP
rs1221064717 616 dbSNP
rs1332022101 632 dbSNP
rs570717366 638 dbSNP
rs745818164 639 dbSNP
rs1233496602 643 dbSNP
rs901610884 644 dbSNP
rs1296127402 652 dbSNP
rs1441129585 655 dbSNP
rs1354911953 656 dbSNP
rs997690030 661 dbSNP
rs1005088100 662 dbSNP
rs1051063797 668 dbSNP
rs1444765350 671 dbSNP
rs1424498457 675 dbSNP
rs112324835 686 dbSNP
rs889340522 694 dbSNP
rs538054465 699 dbSNP
rs1006483297 700 dbSNP
rs187647254 701 dbSNP
rs778280574 708 dbSNP
rs1469934390 709 dbSNP
rs1018874644 719 dbSNP
rs1423936872 732 dbSNP
rs1159668870 736 dbSNP
rs1346806558 737 dbSNP
rs965927260 744 dbSNP
rs996075342 745 dbSNP
rs993936101 750 dbSNP
rs575236029 753 dbSNP
rs1025041904 756 dbSNP
rs1317265645 768 dbSNP
rs1373786903 770 dbSNP
rs1311235896 777 dbSNP
rs1438598198 782 dbSNP
rs1370099455 783 dbSNP
rs1028692551 785 dbSNP
rs971259951 800 dbSNP
rs981291227 802 dbSNP
rs927131074 803 dbSNP
rs747465239 804 dbSNP
rs1380606405 815 dbSNP
rs958590573 829 dbSNP
rs1452998522 830 dbSNP
rs989955201 834 dbSNP
rs1285574846 835 dbSNP
rs1192301049 844 dbSNP
rs771376340 847 dbSNP
rs912933561 849 dbSNP
rs914518700 851 dbSNP
rs1214059651 858 dbSNP
rs967580784 871 dbSNP
rs1461512431 872 dbSNP
rs1231755019 876 dbSNP
rs1369991847 883 dbSNP
rs536273706 884 dbSNP
rs1304047100 887 dbSNP
rs945695111 893 dbSNP
rs1388511786 894 dbSNP
rs1041811565 895 dbSNP
rs1287239222 901 dbSNP
rs33999841 904 dbSNP
rs377168368 907 dbSNP
rs928910366 912 dbSNP
rs138126958 917 dbSNP
rs937619769 925 dbSNP
rs766429442 933 dbSNP
rs933074738 938 dbSNP
rs1050578485 947 dbSNP
rs9398940 951 dbSNP
rs1443465072 960 dbSNP
rs1177776339 968 dbSNP
rs540543714 982 dbSNP
rs565175148 984 dbSNP
rs1488351278 988 dbSNP
rs1264806995 994 dbSNP
rs1006452086 995 dbSNP
rs1346873309 1008 dbSNP
rs1256406031 1013 dbSNP
rs887160381 1016 dbSNP
rs993511992 1017 dbSNP
rs1213990260 1018 dbSNP
rs1025431310 1019 dbSNP
rs940552648 1022 dbSNP
rs577149340 1023 dbSNP
rs1002716342 1026 dbSNP
rs1034116649 1037 dbSNP
rs1303846262 1040 dbSNP
rs1040254571 1041 dbSNP
rs1371809160 1043 dbSNP
rs1170369604 1057 dbSNP
rs901663702 1061 dbSNP
rs1477852918 1068 dbSNP
rs1406460766 1071 dbSNP
rs1425227519 1072 dbSNP
rs989963643 1075 dbSNP
rs1485166528 1076 dbSNP
rs1021492163 1077 dbSNP
rs967731851 1085 dbSNP
rs544059334 1091 dbSNP
rs563025383 1105 dbSNP
rs977078547 1106 dbSNP
rs922934255 1108 dbSNP
rs759299386 1118 dbSNP
rs1219237815 1120 dbSNP
rs996128256 1121 dbSNP
rs566956930 1122 dbSNP
rs1470435257 1132 dbSNP
rs530156320 1133 dbSNP
rs12665323 1139 dbSNP
rs1340048764 1140 dbSNP
rs892809451 1140 dbSNP
rs1447351480 1142 dbSNP
rs1280692068 1143 dbSNP
rs77971107 1148 dbSNP
rs942158756 1155 dbSNP
rs1020045825 1156 dbSNP
rs967509323 1160 dbSNP
rs1298096994 1165 dbSNP
rs981197973 1172 dbSNP
rs1401809534 1180 dbSNP
rs191299683 1195 dbSNP
rs958858593 1205 dbSNP
rs1368616117 1207 dbSNP
rs775095816 1207 dbSNP
rs1417070577 1215 dbSNP
rs1249639798 1219 dbSNP
rs1271225448 1224 dbSNP
rs200874161 1224 dbSNP
rs57487121 1224 dbSNP
rs898072886 1224 dbSNP
rs1355739260 1228 dbSNP
rs1222522020 1233 dbSNP
rs929556095 1239 dbSNP
rs1334315799 1248 dbSNP
rs1288118226 1249 dbSNP
rs1309047079 1250 dbSNP
rs1324644355 1260 dbSNP
rs1225026595 1263 dbSNP
rs1324476049 1264 dbSNP
rs1460413904 1267 dbSNP
rs1046368487 1269 dbSNP
rs1164635051 1270 dbSNP
rs991701877 1275 dbSNP
rs1441389077 1276 dbSNP
rs1204635835 1288 dbSNP
rs878951070 1294 dbSNP
rs777433393 1297 dbSNP
rs1451098529 1299 dbSNP
rs762584125 1302 dbSNP
rs1211832562 1317 dbSNP
rs1348743620 1317 dbSNP
rs1002237953 1325 dbSNP
rs983164297 1327 dbSNP
rs908520067 1336 dbSNP
rs944148037 1341 dbSNP
rs1356308076 1342 dbSNP
rs1041142420 1356 dbSNP
rs767520215 1364 dbSNP
rs901716266 1367 dbSNP
rs1436483425 1369 dbSNP
rs1331151718 1389 dbSNP
rs1429815947 1391 dbSNP
rs1380051642 1405 dbSNP
rs931764874 1424 dbSNP
rs1033705957 1437 dbSNP
rs150077448 1439 dbSNP
rs1421231082 1442 dbSNP
rs1393107342 1444 dbSNP
rs1011354359 1445 dbSNP
rs1248402129 1446 dbSNP
rs1427429252 1449 dbSNP
rs879224177 1450 dbSNP
rs1262673379 1451 dbSNP
rs1414070435 1454 dbSNP
rs1011260516 1475 dbSNP
rs1278690781 1477 dbSNP
rs1219135377 1478 dbSNP
rs528652938 1478 dbSNP
rs535875616 1478 dbSNP
rs537293133 1478 dbSNP
rs5878562 1478 dbSNP
rs796496639 1478 dbSNP
rs751600284 1479 dbSNP
rs1356282008 1480 dbSNP
rs1339296676 1486 dbSNP
rs1298420244 1487 dbSNP
rs1401539715 1488 dbSNP
rs1373367566 1489 dbSNP
rs1440664040 1492 dbSNP
rs1307946307 1501 dbSNP
rs138384155 1506 dbSNP
rs977761928 1508 dbSNP
rs767415830 1510 dbSNP
rs1476874009 1514 dbSNP
rs902838046 1520 dbSNP
rs1225700031 1521 dbSNP
rs1002614491 1534 dbSNP
rs1343895611 1536 dbSNP
rs777337731 1537 dbSNP
rs79872709 1548 dbSNP
rs985817431 1550 dbSNP
rs66683016 1556 dbSNP
rs1194654743 1565 dbSNP
rs1316747970 1566 dbSNP
rs991587273 1570 dbSNP
rs568612593 1571 dbSNP
rs919436695 1574 dbSNP
rs1283237598 1583 dbSNP
rs1448408546 1585 dbSNP
rs929544281 1586 dbSNP
rs1047072108 1587 dbSNP
rs1465075733 1587 dbSNP
rs906807813 1588 dbSNP
rs1027210400 1593 dbSNP
rs535980443 1595 dbSNP
rs1055080136 1597 dbSNP
rs893856505 1600 dbSNP
rs1197036251 1601 dbSNP
rs1181515380 1605 dbSNP
rs62423591 1606 dbSNP
rs1010945943 1608 dbSNP
rs1473325218 1608 dbSNP
rs983039842 1616 dbSNP
rs1457670114 1624 dbSNP
rs1245871076 1637 dbSNP
rs1042849123 1640 dbSNP
rs144504012 1641 dbSNP
rs1332048958 1653 dbSNP
rs1288684683 1656 dbSNP
rs1228596736 1669 dbSNP
rs965404019 1677 dbSNP
rs1277607243 1681 dbSNP
rs1445805798 1684 dbSNP
rs113027329 1690 dbSNP
rs1168555072 1691 dbSNP
rs1030647423 1692 dbSNP
rs921316106 1695 dbSNP
rs1366760256 1704 dbSNP
rs755876997 1708 dbSNP
rs182079068 1713 dbSNP
rs765379437 1724 dbSNP
rs954690145 1726 dbSNP
rs1017290292 1735 dbSNP
rs1406216983 1735 dbSNP
rs187177491 1735 dbSNP
rs752872554 1738 dbSNP
rs1301683152 1743 dbSNP
rs914393735 1745 dbSNP
rs973161347 1746 dbSNP
rs1245663168 1751 dbSNP
rs558925724 1758 dbSNP
rs758492030 1763 dbSNP
rs1323099219 1764 dbSNP
rs1041629757 1773 dbSNP
rs1271568189 1781 dbSNP
rs928196506 1784 dbSNP
rs938271415 1792 dbSNP
rs1438713110 1794 dbSNP
rs1359308025 1795 dbSNP
rs902889532 1810 dbSNP
rs1437315214 1811 dbSNP
rs1002457318 1813 dbSNP
rs1419464420 1818 dbSNP
rs1381389547 1822 dbSNP
rs1160940951 1828 dbSNP
rs1056819434 1831 dbSNP
rs1361539266 1838 dbSNP
rs1220068742 1847 dbSNP
rs1425111019 1853 dbSNP
rs1191229472 1866 dbSNP
rs1489179565 1868 dbSNP
rs192631653 1869 dbSNP
rs1215522450 1886 dbSNP
rs34463125 1901 dbSNP
rs1488493457 1905 dbSNP
rs1447351181 1906 dbSNP
rs1194249121 1931 dbSNP
rs567020476 1943 dbSNP
rs1287951421 1947 dbSNP
rs544464563 1951 dbSNP
rs574390649 1953 dbSNP
rs952901654 1971 dbSNP
rs1042854484 1972 dbSNP
rs73501598 1995 dbSNP
rs1015807913 1996 dbSNP
rs999093250 2000 dbSNP
rs965767938 2007 dbSNP
rs541958699 2008 dbSNP
rs375972837 2017 dbSNP
rs1007485938 2018 dbSNP
rs1017251047 2021 dbSNP
rs963024287 2022 dbSNP
rs994528248 2023 dbSNP
rs1434384444 2024 dbSNP
rs954134561 2024 dbSNP
rs989552403 2025 dbSNP
rs1477973742 2030 dbSNP
rs1264914361 2037 dbSNP
rs1198443972 2044 dbSNP
rs1482810455 2051 dbSNP
rs185412225 2053 dbSNP
rs545778736 2061 dbSNP
rs1212231470 2064 dbSNP
rs540232403 2077 dbSNP
rs1276439754 2083 dbSNP
rs190040379 2086 dbSNP
rs1341319329 2094 dbSNP
rs1324348152 2098 dbSNP
rs959591190 2102 dbSNP
rs1303932753 2115 dbSNP
rs1402017775 2115 dbSNP
rs924520490 2116 dbSNP
rs991047406 2123 dbSNP
rs1397477811 2127 dbSNP
rs1384288461 2132 dbSNP
rs1465690735 2133 dbSNP
rs1243756873 2140 dbSNP
rs1283521264 2167 dbSNP
rs1185034281 2168 dbSNP
rs1351180134 2169 dbSNP
rs915524715 2170 dbSNP
rs1183501195 2181 dbSNP
rs1206650806 2184 dbSNP
rs1456347911 2187 dbSNP
rs1257380126 2196 dbSNP
rs1198016635 2198 dbSNP
rs1318712061 2199 dbSNP
rs1281836098 2214 dbSNP
rs1253282499 2215 dbSNP
rs550416789 2217 dbSNP
rs568570734 2223 dbSNP
rs1340219291 2225 dbSNP
rs1056747568 2230 dbSNP
rs1454941412 2235 dbSNP
rs1042432353 2243 dbSNP
rs894130549 2244 dbSNP
rs1331270764 2263 dbSNP
rs1463717563 2264 dbSNP
rs924013783 2266 dbSNP
rs1208286818 2275 dbSNP
rs1161060303 2281 dbSNP
rs529442854 2283 dbSNP
rs1012653136 2287 dbSNP
rs1457136402 2290 dbSNP
rs1051995423 2293 dbSNP
rs934099184 2293 dbSNP
rs1243888737 2294 dbSNP
rs1179243592 2302 dbSNP
rs1237431492 2302 dbSNP
rs1446520939 2302 dbSNP
rs1186101566 2321 dbSNP
rs1458267214 2321 dbSNP
rs193052910 2322 dbSNP
rs1470772744 2327 dbSNP
rs1208268730 2328 dbSNP
rs1160682196 2334 dbSNP
rs1048139553 2341 dbSNP
rs566556863 2342 dbSNP
rs1355851597 2344 dbSNP
rs1284635932 2371 dbSNP
rs1266298333 2372 dbSNP
rs1248544983 2376 dbSNP
rs533797850 2383 dbSNP
rs1448216428 2388 dbSNP
rs1038950151 2389 dbSNP
rs1320956708 2392 dbSNP
rs576553030 2418 dbSNP
rs1336963516 2422 dbSNP
rs1407745822 2423 dbSNP
rs1417619386 2430 dbSNP
rs1449791722 2434 dbSNP
rs1379531439 2436 dbSNP
rs1159149609 2440 dbSNP
rs1333484325 2443 dbSNP
rs1016273431 2447 dbSNP
rs1441525980 2449 dbSNP
rs1336301317 2454 dbSNP
rs901402159 2459 dbSNP
rs1196802397 2465 dbSNP
rs998420710 2479 dbSNP
rs1451118822 2484 dbSNP
rs1241015175 2487 dbSNP
rs1225082315 2488 dbSNP
rs748457725 2492 dbSNP
rs1285812599 2497 dbSNP
rs1025985483 2507 dbSNP
rs558605961 2518 dbSNP
rs1003310693 2519 dbSNP
rs770350873 2525 dbSNP
rs879310752 2533 dbSNP
rs1284803105 2537 dbSNP
rs959519564 2562 dbSNP
rs990973919 2566 dbSNP
rs954020886 2577 dbSNP
rs1402267017 2580 dbSNP
rs77120481 2581 dbSNP
rs1462752207 2584 dbSNP
rs537757012 2591 dbSNP
rs545561842 2593 dbSNP
rs1198827257 2595 dbSNP
rs1378317735 2599 dbSNP
rs1201827499 2610 dbSNP
rs184925686 2613 dbSNP
rs770158049 2616 dbSNP
rs923969007 2618 dbSNP
rs1217719691 2623 dbSNP
rs968966959 2638 dbSNP
rs977256766 2642 dbSNP
rs1449110932 2646 dbSNP
rs1438899684 2647 dbSNP
rs924420160 2655 dbSNP
rs1200454913 2659 dbSNP
rs938628678 2660 dbSNP
rs1284707126 2663 dbSNP
rs934047521 2665 dbSNP
rs775305397 2671 dbSNP
rs986889773 2679 dbSNP
rs915616381 2681 dbSNP
rs556374058 2682 dbSNP
rs1338548533 2687 dbSNP
rs911333235 2698 dbSNP
rs1415016887 2705 dbSNP
rs943180590 2708 dbSNP
rs1038920422 2717 dbSNP
rs1048625885 2727 dbSNP
rs1423110202 2730 dbSNP
rs1187387089 2735 dbSNP
rs888173928 2743 dbSNP
rs1236130091 2746 dbSNP
rs930578399 2748 dbSNP
rs1443450804 2750 dbSNP
rs1265579488 2752 dbSNP
rs1047823405 2754 dbSNP
rs1316771230 2769 dbSNP
rs1258294310 2771 dbSNP
rs1215999551 2774 dbSNP
rs1301787056 2782 dbSNP
rs1353961556 2787 dbSNP
rs1283330470 2788 dbSNP
rs1399733787 2789 dbSNP
rs1448519995 2789 dbSNP
rs71545771 2789 dbSNP
rs764549855 2789 dbSNP
rs1396519750 2790 dbSNP
rs79209351 2802 dbSNP
rs1411916045 2803 dbSNP
rs1003651143 2811 dbSNP
rs1162999733 2815 dbSNP
rs1445627915 2821 dbSNP
rs1037226062 2828 dbSNP
rs901330086 2834 dbSNP
rs1456904941 2835 dbSNP
rs998474479 2843 dbSNP
rs1238304962 2845 dbSNP
rs1034716315 2847 dbSNP
rs1206035176 2847 dbSNP
rs1028578355 2856 dbSNP
rs1012363862 2859 dbSNP
rs1022426976 2864 dbSNP
rs1284911853 2867 dbSNP
rs889795914 2872 dbSNP
rs773998346 2878 dbSNP
rs1239386877 2893 dbSNP
rs1022818130 2894 dbSNP
rs966839770 2897 dbSNP
rs1376226621 2898 dbSNP
rs1231248603 2915 dbSNP
rs1444499966 2919 dbSNP
rs978554696 2923 dbSNP
rs1323159464 2943 dbSNP
rs776841872 2948 dbSNP
rs763130765 2949 dbSNP
rs1340137025 2950 dbSNP
rs1439566266 2953 dbSNP
rs1031475477 2955 dbSNP
rs574594619 2956 dbSNP
rs959828085 2957 dbSNP
rs1031392469 2960 dbSNP
rs1245755093 2966 dbSNP
rs1222855207 2969 dbSNP
rs541617191 2983 dbSNP
rs1283682412 2984 dbSNP
rs1482960456 2993 dbSNP
rs1354282302 2994 dbSNP
rs1309095550 2998 dbSNP
rs202228843 2999 dbSNP
rs992744456 3001 dbSNP
rs200533700 3002 dbSNP
rs948419125 3009 dbSNP
rs1431109186 3014 dbSNP
rs942770242 3015 dbSNP
rs974532456 3018 dbSNP
rs983785474 3036 dbSNP
rs930525705 3045 dbSNP
rs572187565 3050 dbSNP
rs562378614 3053 dbSNP
rs35051628 3055 dbSNP
rs1423938681 3070 dbSNP
rs1373215005 3079 dbSNP
rs541833143 3088 dbSNP
rs59999968 3094 dbSNP
rs1260596023 3108 dbSNP
rs939798610 3110 dbSNP
rs760414090 3113 dbSNP
rs1037153367 3116 dbSNP
rs538918715 3146 dbSNP
rs1262395096 3154 dbSNP
rs564155829 3157 dbSNP
rs767380140 3158 dbSNP
rs531691327 3163 dbSNP
rs939030149 3164 dbSNP
rs1304738977 3167 dbSNP
rs934143594 3168 dbSNP
rs1050036143 3169 dbSNP
rs34054819 3173 dbSNP
rs1363142916 3176 dbSNP
rs370911883 3176 dbSNP
rs1011553756 3179 dbSNP
rs562395556 3180 dbSNP
rs1359108521 3182 dbSNP
rs902479486 3202 dbSNP
rs1229673579 3203 dbSNP
rs1272506880 3204 dbSNP
rs1420956998 3212 dbSNP
rs189301877 3214 dbSNP
rs1192543880 3232 dbSNP
rs1342114172 3233 dbSNP
rs1223788842 3242 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000328345.5 | 3UTR | AAUGAAGUGAAAAAAAAAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000328345.5 | 3UTR | AAAUGAAGUGAAAAAAAAAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
75 hsa-miR-3152-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092535 KBTBD8 kelch repeat and BTB domain containing 8 2 6
MIRT461731 NDUFA2 NADH:ubiquinone oxidoreductase subunit A2 2 2
MIRT468456 SET SET nuclear proto-oncogene 2 2
MIRT482192 AHR aryl hydrocarbon receptor 2 2
MIRT507923 BZW1 basic leucine zipper and W2 domains 1 2 4
MIRT512208 C18orf25 chromosome 18 open reading frame 25 2 6
MIRT526238 STARD4 StAR related lipid transfer domain containing 4 2 2
MIRT536131 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT536280 LIMA1 LIM domain and actin binding 1 2 2
MIRT544251 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT548054 GOLGA7 golgin A7 2 2
MIRT563443 ISCA1 iron-sulfur cluster assembly 1 2 2
MIRT565643 SIX4 SIX homeobox 4 2 2
MIRT614870 PDE12 phosphodiesterase 12 2 2
MIRT614923 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT615793 FAM124A family with sequence similarity 124 member A 2 2
MIRT618557 VLDLR very low density lipoprotein receptor 2 2
MIRT622147 SORBS2 sorbin and SH3 domain containing 2 2 2
MIRT622390 RSBN1 round spermatid basic protein 1 2 2
MIRT624185 DDX19B DEAD-box helicase 19B 2 2
MIRT624448 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT625340 TAPBP TAP binding protein 2 2
MIRT625370 IRGQ immunity related GTPase Q 2 2
MIRT627276 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT627746 RAD54L2 RAD54 like 2 2 2
MIRT629578 RFC2 replication factor C subunit 2 2 4
MIRT630537 LGALS8 galectin 8 2 4
MIRT630559 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT630568 SOWAHA sosondowah ankyrin repeat domain family member A 2 4
MIRT630763 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT635424 LRP10 LDL receptor related protein 10 2 2
MIRT636011 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 2 2
MIRT636337 PHAX phosphorylated adaptor for RNA export 2 2
MIRT638413 POU3F2 POU class 3 homeobox 2 2 2
MIRT639358 INIP INTS3 and NABP interacting protein 2 2
MIRT642124 DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A 2 4
MIRT642828 KIAA0319 KIAA0319 2 2
MIRT644017 NUCB1 nucleobindin 1 2 2
MIRT644038 WWC2 WW and C2 domain containing 2 2 2
MIRT644153 GIN1 gypsy retrotransposon integrase 1 2 2
MIRT644649 SNX9 sorting nexin 9 2 2
MIRT645798 OMA1 OMA1 zinc metallopeptidase 2 2
MIRT647633 FAIM2 Fas apoptotic inhibitory molecule 2 2 2
MIRT648528 KIAA1143 KIAA1143 2 2
MIRT648851 PDLIM3 PDZ and LIM domain 3 2 2
MIRT648880 TUBGCP5 tubulin gamma complex associated protein 5 2 2
MIRT650777 TNFRSF10A TNF receptor superfamily member 10a 2 2
MIRT654200 RNF19B ring finger protein 19B 2 2
MIRT654508 RAB5B RAB5B, member RAS oncogene family 2 2
MIRT655249 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT656089 MTA3 metastasis associated 1 family member 3 2 2
MIRT656599 LRRC55 leucine rich repeat containing 55 2 2
MIRT659194 CYBB cytochrome b-245 beta chain 2 2
MIRT660000 C1orf115 chromosome 1 open reading frame 115 2 4
MIRT661715 KLF8 Kruppel like factor 8 2 2
MIRT661813 PRPSAP1 phosphoribosyl pyrophosphate synthetase associated protein 1 2 2
MIRT668360 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT679734 CABP4 calcium binding protein 4 2 2
MIRT708616 NUDT18 nudix hydrolase 18 2 2
MIRT709034 TROVE2 TROVE domain family member 2 2 2
MIRT709573 DMGDH dimethylglycine dehydrogenase 2 2
MIRT709665 AJAP1 adherens junctions associated protein 1 2 2
MIRT709874 TRAF1 TNF receptor associated factor 1 2 2
MIRT710821 NLRP12 NLR family pyrin domain containing 12 2 2
MIRT710883 PARL presenilin associated rhomboid like 2 2
MIRT711547 LCAT lecithin-cholesterol acyltransferase 2 2
MIRT712017 STX1B syntaxin 1B 2 2
MIRT713058 BLVRA biliverdin reductase A 2 2
MIRT713129 THRB thyroid hormone receptor beta 2 2
MIRT713878 MOB3A MOB kinase activator 3A 2 2
MIRT714154 NXPH3 neurexophilin 3 2 2
MIRT719755 FLYWCH1 FLYWCH-type zinc finger 1 2 2
MIRT720213 KCNK1 potassium two pore domain channel subfamily K member 1 2 2
MIRT722728 BRMS1 breast cancer metastasis suppressor 1 2 2
MIRT725652 ABI2 abl interactor 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3152-5p Palbociclib 5330286 NSC758247 approved resistant cell line (T47D)
hsa-miR-3152-5p Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)

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