pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CLMP   
Synonyms ACAM, ASAM, CSBM, CSBS
Description CXADR like membrane protein
Transcript NM_024769   
Expression
Putative miRNA Targets on CLMP
3'UTR of CLMP
(miRNA target sites are highlighted)
>CLMP|NM_024769|3'UTR
   1 ATTACAATGGACTTGACTCCCACGCTTTCCTAGGAGTCAGGGTCTTTGGACTCTTCTCGTCATTGGAGCTCAAGTCACCA
  81 GCCACACAACCAGATGAGAGGTCATCTAAGTAGCAGTGAGCATTGCACGGAACAGATTCAGATGAGCATTTTCCTTATAC
 161 AATACCAAACAAGCAAAAGGATGTAAGCTGATTCATCTGTAAAAAGGCATCTTATTGTGCCTTTAGACCAGAGTAAGGGA
 241 AAGCAGGAGTCCAAATCTATTTGTTGACCAGGACCTGTGGTGAGAAGGTTGGGGAAAGGTGAGGTGAATATACCTAAAAC
 321 TTTTAATGTGGGATATTTTGTATCAGTGCTTTGATTCACAATTTTCAAGAGGAAATGGGATGCTGTTTGTAAATTTTCTA
 401 TGCATTTCTGCAAACTTATTGGATTATTAGTTATTCAGACAGTCAAGCAGAACCCACAGCCTTATTACACCTGTCTACAC
 481 CATGTACTGAGCTAACCACTTCTAAGAAACTCCAAAAAAGGAAACATGTGTCTTCTATTCTGACTTAACTTCATTTGTCA
 561 TAAGGTTTGGATATTAATTTCAAGGGGAGTTGAAATAGTGGGAGATGGAGAAGAGTGAATGAGTTTCTCCCACTCTATAC
 641 TAATCTCACTATTTGTATTGAGCCCAAAATAACTATGAAAGGAGACAAAAATTTGTGACAAAGGATTGTGAAGAGCTTTC
 721 CATCTTCATGATGTTATGAGGATTGTTGACAAACATTAGAAATATATAATGGAGCAATTGTGGATTTCCCCTCAAATCAG
 801 ATGCCTCTAAGGACTTTCCTGCTAGATATTTCTGGAAGGAGAAAATACAACATGTCATTTATCAACGTCCTTAGAAAGAA
 881 TTCTTCTAGAGAAAAAGGGATCTAGGAATGCTGAAAGATTACCCAACATACCATTATAGTCTCTTCTTTCTGAGAAAATG
 961 TGAAACCAGAATTGCAAGACTGGGTGGACTAGAAAGGGAGATTAGATCAGTTTTCTCTTAATATGTCAAGGAAGGTAGCC
1041 GGGCATGGTGCCAGGCACCTGTAGGAAAATCCAGCAGGTGGAGGTTGCAGTGAGCCAAGATTATGCCATTGCACTCCAGC
1121 CTGGGTGACAAAGCAAGACTCCATCTCAAAAAAAAAAAAAAATCAAGGAAGGATAAAAGGAAGTTCAGTATTGTACCACA
1201 CTTGGAACTTCCTCCATTTCTTCCATTTTAGAAGGATATGAACCTGGAACTTTTGATGATTCTAAGCCTTAAACTATCAA
1281 AAAGATCAGGGATTGCCAATGCTTCTAATGGCACTGCAAGTATATGCCATAACCGTTCCCTCCTAAAAGTGAAAAATGAG
1361 AGAAATTCAGTATTTTCCCAGGCTCAGCATCCAGAAGTCTAGCTCTGGGCTGGAAGAAAAGGGTACTAATATTTAGGGAA
1441 GAGATGAGAATAAGTAGTGGGTGGCAGG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGUCGG---UUGAGUG---UCA-CGUCu 5'
            |||| :   |: |||:   ||| |||| 
Target 5' aaCCAGATGAGAGGTCATCTAAGTAGCAGt 3'
88 - 117 121.00 -14.90
2
miRNA  3' ucgGUCGGUUGAGUGUCAC-GUCu 5'
             :||||::  ||::||| ||| 
Target 5' aggTAGCCGG-GCATGGTGCCAGg 3'
1033 - 1055 115.00 -22.20
3
miRNA  3' ucGGUCGGUUGAGUGUC--ACGUCu 5'
            |||| ||: | : ||  ||||| 
Target 5' atCCAG-CAGGT-GGAGGTTGCAGt 3'
1069 - 1091 115.00 -15.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31590589 12 COSMIC
COSN30180310 15 COSMIC
COSN30491705 24 COSMIC
COSN30463297 33 COSMIC
COSN30471444 34 COSMIC
COSN31562937 49 COSMIC
COSN30501929 51 COSMIC
COSN28704498 54 COSMIC
COSN30480064 56 COSMIC
COSN31554913 59 COSMIC
COSN30139871 79 COSMIC
COSN8214984 93 COSMIC
COSN31535267 103 COSMIC
COSN32050314 141 COSMIC
COSN31603800 194 COSMIC
COSN28650520 380 COSMIC
COSN16923334 690 COSMIC
COSN6989757 792 COSMIC
COSN8735362 837 COSMIC
COSN26108880 1117 COSMIC
COSN27294513 1147 COSMIC
COSN24645789 1751 COSMIC
COSN8214983 2180 COSMIC
COSN1128039 2267 COSMIC
COSN21524469 2345 COSMIC
COSN21235626 2373 COSMIC
COSN32134848 2648 COSMIC
COSN21540404 2913 COSMIC
COSN5257534 3152 COSMIC
COSN26106276 3315 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs756597237 6 dbSNP
rs537453872 8 dbSNP
rs1259537233 10 dbSNP
rs1200530138 13 dbSNP
rs376314634 15 dbSNP
rs759019523 16 dbSNP
rs1194237224 18 dbSNP
rs1236674945 19 dbSNP
rs1442548711 21 dbSNP
rs747081140 22 dbSNP
rs774009190 23 dbSNP
rs765979424 24 dbSNP
rs762772154 31 dbSNP
rs773154275 33 dbSNP
rs769769671 35 dbSNP
rs1156271831 37 dbSNP
rs748067045 38 dbSNP
rs1401641331 40 dbSNP
rs35868247 43 dbSNP
rs373796108 50 dbSNP
rs986692206 52 dbSNP
rs117702536 54 dbSNP
rs551874013 58 dbSNP
rs1390252884 59 dbSNP
rs1450941869 59 dbSNP
rs1187432333 63 dbSNP
rs1028226735 66 dbSNP
rs1259024367 73 dbSNP
rs118065564 76 dbSNP
rs1205870122 78 dbSNP
rs1262763500 81 dbSNP
rs1244623380 91 dbSNP
rs1185227819 96 dbSNP
rs898520798 96 dbSNP
rs10645884 101 dbSNP
rs149599709 101 dbSNP
rs1438995128 103 dbSNP
rs1179663672 105 dbSNP
rs1364960494 107 dbSNP
rs894158262 110 dbSNP
rs1171587928 111 dbSNP
rs557685270 115 dbSNP
rs936947521 117 dbSNP
rs1254715114 118 dbSNP
rs1384065316 118 dbSNP
rs1016945683 123 dbSNP
rs1343546144 126 dbSNP
rs747809664 128 dbSNP
rs571453933 129 dbSNP
rs1337552808 135 dbSNP
rs59525775 142 dbSNP
rs1057031726 144 dbSNP
rs912599541 146 dbSNP
rs986891862 156 dbSNP
rs1335107993 159 dbSNP
rs546467896 165 dbSNP
rs183366057 172 dbSNP
rs905429090 179 dbSNP
rs1480191607 182 dbSNP
rs1396335125 186 dbSNP
rs1252609931 187 dbSNP
rs1419111251 188 dbSNP
rs1197514222 206 dbSNP
rs1045362633 213 dbSNP
rs1397698810 215 dbSNP
rs1401220685 226 dbSNP
rs116626693 231 dbSNP
rs1431517288 233 dbSNP
rs780760117 234 dbSNP
rs921285363 239 dbSNP
rs1167368739 244 dbSNP
rs1461809025 244 dbSNP
rs1296901911 254 dbSNP
rs1399294227 255 dbSNP
rs1392517326 259 dbSNP
rs1447173323 264 dbSNP
rs542173742 268 dbSNP
rs1282699520 270 dbSNP
rs1386639140 274 dbSNP
rs775307968 277 dbSNP
rs1225515048 286 dbSNP
rs1187834654 288 dbSNP
rs1284183492 288 dbSNP
rs973969064 290 dbSNP
rs1376781110 292 dbSNP
rs1225008821 294 dbSNP
rs148725507 304 dbSNP
rs1480906474 309 dbSNP
rs1221734867 314 dbSNP
rs866784150 317 dbSNP
rs934405400 324 dbSNP
rs563207640 327 dbSNP
rs971261222 330 dbSNP
rs545101093 331 dbSNP
rs11218952 340 dbSNP
rs1168733922 345 dbSNP
rs1274591818 352 dbSNP
rs894127014 355 dbSNP
rs1203028683 359 dbSNP
rs1054079088 361 dbSNP
rs1406873110 369 dbSNP
rs1303948006 373 dbSNP
rs1001118323 378 dbSNP
rs11218951 380 dbSNP
rs541739529 382 dbSNP
rs1307928815 384 dbSNP
rs1284914521 387 dbSNP
rs1245070879 389 dbSNP
rs757242096 390 dbSNP
rs975314667 395 dbSNP
rs549551464 398 dbSNP
rs1016893392 401 dbSNP
rs1310285658 404 dbSNP
rs1411455845 414 dbSNP
rs556100398 415 dbSNP
rs144225440 419 dbSNP
rs570049406 422 dbSNP
rs1307350857 423 dbSNP
rs1383957955 428 dbSNP
rs1427156912 434 dbSNP
rs1427201410 434 dbSNP
rs559211419 443 dbSNP
rs1428886697 448 dbSNP
rs1290858277 453 dbSNP
rs1035137483 480 dbSNP
rs557955802 485 dbSNP
rs1457074661 492 dbSNP
rs1312776161 494 dbSNP
rs1384867241 514 dbSNP
rs1246684173 530 dbSNP
rs1282924788 533 dbSNP
rs761024294 547 dbSNP
rs539950325 557 dbSNP
rs192589557 560 dbSNP
rs571107244 561 dbSNP
rs1045310725 569 dbSNP
rs1184371500 580 dbSNP
rs1473125907 590 dbSNP
rs1251651667 591 dbSNP
rs546429319 598 dbSNP
rs1183336174 608 dbSNP
rs1241741101 615 dbSNP
rs1446964862 623 dbSNP
rs1183025190 640 dbSNP
rs201407484 647 dbSNP
rs1399038285 651 dbSNP
rs139931484 651 dbSNP
rs1011167853 658 dbSNP
rs962743043 660 dbSNP
rs894103985 676 dbSNP
rs1384795180 683 dbSNP
rs528279368 686 dbSNP
rs7949414 687 dbSNP
rs116027672 691 dbSNP
rs1225000673 703 dbSNP
rs1307137513 704 dbSNP
rs767688185 729 dbSNP
rs1354451889 730 dbSNP
rs1201455279 732 dbSNP
rs759938704 737 dbSNP
rs991184982 739 dbSNP
rs1261659565 743 dbSNP
rs1262751842 757 dbSNP
rs1229935737 762 dbSNP
rs1211366388 764 dbSNP
rs1232829940 766 dbSNP
rs958483373 772 dbSNP
rs1032638344 778 dbSNP
rs1350900849 794 dbSNP
rs1412856510 798 dbSNP
rs1480224672 801 dbSNP
rs1000230482 804 dbSNP
rs1407938662 806 dbSNP
rs1287557491 812 dbSNP
rs1414849748 821 dbSNP
rs902856286 823 dbSNP
rs548410817 824 dbSNP
rs1009842070 838 dbSNP
rs1332807177 846 dbSNP
rs933791128 848 dbSNP
rs921104669 866 dbSNP
rs1385759521 867 dbSNP
rs1388043880 870 dbSNP
rs1160942855 874 dbSNP
rs563327078 883 dbSNP
rs774509611 889 dbSNP
rs891282651 906 dbSNP
rs1051297126 919 dbSNP
rs576308591 919 dbSNP
rs1411682785 920 dbSNP
rs77166726 926 dbSNP
rs962598052 927 dbSNP
rs1252620181 930 dbSNP
rs909836713 935 dbSNP
rs983174167 936 dbSNP
rs139637019 939 dbSNP
rs1197480208 952 dbSNP
rs146318886 960 dbSNP
rs1038459303 968 dbSNP
rs1478503057 969 dbSNP
rs142570146 974 dbSNP
rs138029442 998 dbSNP
rs1411590820 1006 dbSNP
rs1169150406 1008 dbSNP
rs983084909 1013 dbSNP
rs1402582572 1017 dbSNP
rs1304536689 1018 dbSNP
rs1209585370 1023 dbSNP
rs969508011 1030 dbSNP
rs1429644842 1031 dbSNP
rs1023808928 1040 dbSNP
rs763501778 1041 dbSNP
rs917073394 1044 dbSNP
rs1358771144 1050 dbSNP
rs1220312376 1054 dbSNP
rs552417646 1056 dbSNP
rs1452392943 1081 dbSNP
rs991322380 1084 dbSNP
rs1240079750 1085 dbSNP
rs958535152 1087 dbSNP
rs1346983148 1092 dbSNP
rs1032690112 1096 dbSNP
rs562335495 1098 dbSNP
rs773900741 1102 dbSNP
rs1390896211 1105 dbSNP
rs544130519 1110 dbSNP
rs1315791131 1112 dbSNP
rs1328833989 1113 dbSNP
rs967427333 1116 dbSNP
rs1437768437 1120 dbSNP
rs1298855843 1123 dbSNP
rs1322049835 1126 dbSNP
rs150388532 1136 dbSNP
rs527495785 1137 dbSNP
rs954340248 1140 dbSNP
rs1267302840 1142 dbSNP
rs1318898574 1146 dbSNP
rs1416551148 1147 dbSNP
rs1282453332 1148 dbSNP
rs1448474537 1160 dbSNP
rs1188929022 1161 dbSNP
rs1242347140 1162 dbSNP
rs1491084235 1163 dbSNP
rs201108754 1163 dbSNP
rs536239114 1163 dbSNP
rs556174704 1163 dbSNP
rs1156396509 1164 dbSNP
rs1386643311 1165 dbSNP
rs558178219 1166 dbSNP
rs1010222938 1180 dbSNP
rs998903744 1198 dbSNP
rs1315459445 1199 dbSNP
rs539540924 1201 dbSNP
rs1341093490 1203 dbSNP
rs1238465265 1212 dbSNP
rs1277891723 1218 dbSNP
rs1331453501 1240 dbSNP
rs1029920914 1243 dbSNP
rs1262269844 1253 dbSNP
rs996981597 1257 dbSNP
rs900012088 1259 dbSNP
rs769410210 1261 dbSNP
rs1256804802 1266 dbSNP
rs11218950 1274 dbSNP
rs371419688 1289 dbSNP
rs553851209 1293 dbSNP
rs776344543 1297 dbSNP
rs1472712226 1299 dbSNP
rs767267655 1307 dbSNP
rs1039503351 1309 dbSNP
rs1189347203 1311 dbSNP
rs941225975 1320 dbSNP
rs534480400 1323 dbSNP
rs1305071939 1326 dbSNP
rs567137065 1328 dbSNP
rs929936627 1334 dbSNP
rs74746903 1335 dbSNP
rs1352474963 1338 dbSNP
rs1229170568 1342 dbSNP
rs949969834 1345 dbSNP
rs1321086920 1346 dbSNP
rs537377599 1350 dbSNP
rs1235181563 1363 dbSNP
rs982561799 1366 dbSNP
rs917125783 1371 dbSNP
rs1480261986 1372 dbSNP
rs532359922 1372 dbSNP
rs1253264244 1385 dbSNP
rs113308149 1386 dbSNP
rs1299151830 1389 dbSNP
rs1228528012 1393 dbSNP
rs1266373145 1397 dbSNP
rs1481238557 1405 dbSNP
rs1178657480 1410 dbSNP
rs1378632598 1421 dbSNP
rs989630787 1422 dbSNP
rs551319198 1425 dbSNP
rs1461912547 1430 dbSNP
rs925809253 1438 dbSNP
rs779777108 1443 dbSNP
rs532795505 1446 dbSNP
rs1294953950 1449 dbSNP
rs1302736552 1450 dbSNP
rs967184377 1456 dbSNP
rs1388804457 1462 dbSNP
rs958212445 1464 dbSNP
rs559464625 1468 dbSNP
rs1306711246 1472 dbSNP
rs1031642996 1477 dbSNP
rs1225081697 1479 dbSNP
rs1450565931 1483 dbSNP
rs912884581 1495 dbSNP
rs758220035 1498 dbSNP
rs1342203908 1499 dbSNP
rs999789904 1506 dbSNP
rs987114423 1511 dbSNP
rs1334002946 1518 dbSNP
rs1266208109 1536 dbSNP
rs1413238744 1544 dbSNP
rs1489248633 1545 dbSNP
rs902807912 1550 dbSNP
rs547532809 1552 dbSNP
rs1428306530 1554 dbSNP
rs1029888324 1556 dbSNP
rs1482317111 1557 dbSNP
rs1392598862 1566 dbSNP
rs141322855 1578 dbSNP
rs1388486672 1581 dbSNP
rs867343001 1597 dbSNP
rs1363865830 1608 dbSNP
rs373731397 1614 dbSNP
rs1183802488 1622 dbSNP
rs369651665 1632 dbSNP
rs1294357491 1633 dbSNP
rs542021654 1641 dbSNP
rs1360956935 1644 dbSNP
rs188690431 1648 dbSNP
rs1299603072 1653 dbSNP
rs997839772 1673 dbSNP
rs899578031 1676 dbSNP
rs1237806263 1688 dbSNP
rs34786110 1693 dbSNP
rs1039449863 1711 dbSNP
rs941172172 1723 dbSNP
rs888296629 1724 dbSNP
rs1254184505 1725 dbSNP
rs1323001162 1731 dbSNP
rs562296361 1732 dbSNP
rs182716704 1733 dbSNP
rs1006040372 1735 dbSNP
rs1485722176 1739 dbSNP
rs576713608 1743 dbSNP
rs1206468882 1751 dbSNP
rs1207183428 1751 dbSNP
rs1411649300 1751 dbSNP
rs761902449 1751 dbSNP
rs887239247 1753 dbSNP
rs564633612 1755 dbSNP
rs759374171 1756 dbSNP
rs1014175937 1761 dbSNP
rs895834170 1763 dbSNP
rs546130826 1764 dbSNP
rs1055615714 1767 dbSNP
rs1340864178 1769 dbSNP
rs778871114 1772 dbSNP
rs1451741713 1773 dbSNP
rs148202111 1789 dbSNP
rs1380644394 1798 dbSNP
rs553812673 1807 dbSNP
rs1228425018 1814 dbSNP
rs948061216 1815 dbSNP
rs535585783 1818 dbSNP
rs1210281270 1819 dbSNP
rs989578455 1823 dbSNP
rs925766412 1825 dbSNP
rs1465643751 1831 dbSNP
rs1042931156 1835 dbSNP
rs958158967 1840 dbSNP
rs573476391 1845 dbSNP
rs1379498178 1850 dbSNP
rs1031171443 1851 dbSNP
rs555581103 1855 dbSNP
rs978705009 1856 dbSNP
rs145781855 1860 dbSNP
rs1031029212 1862 dbSNP
rs574229891 1863 dbSNP
rs1309183250 1866 dbSNP
rs1161651838 1867 dbSNP
rs987229618 1872 dbSNP
rs569888081 1876 dbSNP
rs1469120124 1882 dbSNP
rs191063248 1891 dbSNP
rs1332064856 1895 dbSNP
rs954334953 1896 dbSNP
rs114901619 1898 dbSNP
rs975648486 1900 dbSNP
rs565714476 1908 dbSNP
rs547494045 1917 dbSNP
rs1017948776 1918 dbSNP
rs1229789092 1920 dbSNP
rs1005265011 1921 dbSNP
rs529045622 1925 dbSNP
rs1299565 1929 dbSNP
rs543458214 1934 dbSNP
rs964323170 1938 dbSNP
rs1413374715 1944 dbSNP
rs1017517132 1962 dbSNP
rs888235352 1963 dbSNP
rs186209278 1979 dbSNP
rs994437886 1984 dbSNP
rs906433920 1992 dbSNP
rs368025887 1996 dbSNP
rs1482120947 1997 dbSNP
rs1014311808 2005 dbSNP
rs1299564 2006 dbSNP
rs1253814761 2007 dbSNP
rs948007002 2010 dbSNP
rs916592113 2012 dbSNP
rs1427074488 2019 dbSNP
rs1357037143 2031 dbSNP
rs752785598 2035 dbSNP
rs1001402025 2040 dbSNP
rs904481295 2040 dbSNP
rs1043372384 2045 dbSNP
rs1053832627 2063 dbSNP
rs936737252 2064 dbSNP
rs1433929435 2065 dbSNP
rs1273443763 2073 dbSNP
rs115214030 2074 dbSNP
rs1220255622 2078 dbSNP
rs1051491159 2083 dbSNP
rs1340086283 2084 dbSNP
rs10892960 2085 dbSNP
rs1275503936 2087 dbSNP
rs182310865 2090 dbSNP
rs974444384 2091 dbSNP
rs923521738 2092 dbSNP
rs1248181299 2099 dbSNP
rs766805275 2100 dbSNP
rs1331644835 2101 dbSNP
rs1185821379 2107 dbSNP
rs763464997 2112 dbSNP
rs974976344 2114 dbSNP
rs1431607297 2115 dbSNP
rs750956841 2117 dbSNP
rs1364491209 2124 dbSNP
rs1349234553 2125 dbSNP
rs1295315749 2129 dbSNP
rs1017896725 2133 dbSNP
rs984794587 2134 dbSNP
rs1437664360 2141 dbSNP
rs951556777 2142 dbSNP
rs765734483 2143 dbSNP
rs762389100 2148 dbSNP
rs1231329348 2156 dbSNP
rs1298415509 2162 dbSNP
rs116274621 2164 dbSNP
rs1025841857 2165 dbSNP
rs993993303 2166 dbSNP
rs1292331480 2168 dbSNP
rs1413901862 2170 dbSNP
rs1452450587 2171 dbSNP
rs141930781 2179 dbSNP
rs1046312952 2181 dbSNP
rs553991977 2187 dbSNP
rs1034312810 2188 dbSNP
rs768236140 2190 dbSNP
rs1471534468 2192 dbSNP
rs904534022 2201 dbSNP
rs1390962501 2202 dbSNP
rs1399800878 2204 dbSNP
rs1248364667 2205 dbSNP
rs1192358273 2209 dbSNP
rs1437818975 2210 dbSNP
rs1488527891 2218 dbSNP
rs769495984 2229 dbSNP
rs1339906634 2231 dbSNP
rs1021518009 2238 dbSNP
rs1286079172 2243 dbSNP
rs1010591280 2246 dbSNP
rs1228091788 2247 dbSNP
rs1265940519 2266 dbSNP
rs760205700 2267 dbSNP
rs1466094647 2270 dbSNP
rs1129056 2271 dbSNP
rs1053778735 2274 dbSNP
rs146955359 2275 dbSNP
rs371632237 2279 dbSNP
rs574554161 2284 dbSNP
rs900213183 2288 dbSNP
rs1042883791 2305 dbSNP
rs933472795 2313 dbSNP
rs556388873 2318 dbSNP
rs941676289 2319 dbSNP
rs1459185712 2321 dbSNP
rs1315614187 2330 dbSNP
rs564965450 2331 dbSNP
rs1304056410 2334 dbSNP
rs984372527 2340 dbSNP
rs376141118 2343 dbSNP
rs930251056 2344 dbSNP
rs1463335382 2345 dbSNP
rs923447135 2349 dbSNP
rs1409382457 2350 dbSNP
rs1286706091 2352 dbSNP
rs918749276 2356 dbSNP
rs1228743307 2358 dbSNP
rs1255241011 2367 dbSNP
rs992998499 2370 dbSNP
rs1366981131 2375 dbSNP
rs190939824 2381 dbSNP
rs1202173051 2388 dbSNP
rs778816061 2393 dbSNP
rs1034366588 2395 dbSNP
rs1253488650 2396 dbSNP
rs576175462 2401 dbSNP
rs983735354 2402 dbSNP
rs1389730088 2406 dbSNP
rs1472743167 2406 dbSNP
rs185835742 2415 dbSNP
rs1025365508 2430 dbSNP
rs1456509100 2433 dbSNP
rs1174846239 2443 dbSNP
rs1402935508 2452 dbSNP
rs1429217718 2460 dbSNP
rs554486690 2464 dbSNP
rs1022071446 2472 dbSNP
rs970547647 2476 dbSNP
rs1300326967 2490 dbSNP
rs1178122223 2491 dbSNP
rs181408174 2495 dbSNP
rs1235248608 2497 dbSNP
rs1012122361 2499 dbSNP
rs553844266 2500 dbSNP
rs1433766044 2505 dbSNP
rs1423815626 2506 dbSNP
rs1030255947 2507 dbSNP
rs1431829000 2513 dbSNP
rs1201589157 2517 dbSNP
rs1032284173 2525 dbSNP
rs1000848953 2530 dbSNP
rs902523563 2533 dbSNP
rs1191259852 2535 dbSNP
rs1429723391 2536 dbSNP
rs1166779843 2541 dbSNP
rs535452211 2555 dbSNP
rs1430567079 2570 dbSNP
rs1293173682 2579 dbSNP
rs1388248666 2582 dbSNP
rs1248293072 2593 dbSNP
rs933401954 2594 dbSNP
rs1038780511 2599 dbSNP
rs1485105875 2603 dbSNP
rs1258200698 2606 dbSNP
rs901972819 2609 dbSNP
rs1211437205 2610 dbSNP
rs148993916 2616 dbSNP
rs887439999 2619 dbSNP
rs1220316831 2631 dbSNP
rs1263340627 2635 dbSNP
rs1489278883 2637 dbSNP
rs1047885980 2641 dbSNP
rs1230737339 2647 dbSNP
rs1254080767 2650 dbSNP
rs943565504 2654 dbSNP
rs1366113093 2657 dbSNP
rs755112763 2658 dbSNP
rs1046579 2665 dbSNP
rs751812960 2672 dbSNP
rs189388018 2678 dbSNP
rs1380798932 2684 dbSNP
rs1164221219 2685 dbSNP
rs1366912409 2686 dbSNP
rs918250095 2687 dbSNP
rs531897960 2696 dbSNP
rs1304412369 2711 dbSNP
rs1293893590 2712 dbSNP
rs918801855 2714 dbSNP
rs1432740975 2715 dbSNP
rs1422153015 2719 dbSNP
rs1358528765 2731 dbSNP
rs1057327117 2733 dbSNP
rs972466250 2734 dbSNP
rs927487891 2741 dbSNP
rs1450798312 2743 dbSNP
rs570988862 2745 dbSNP
rs970458158 2747 dbSNP
rs1245153533 2749 dbSNP
rs1024758425 2755 dbSNP
rs990632864 2758 dbSNP
rs1207331660 2775 dbSNP
rs959211398 2783 dbSNP
rs1252699281 2787 dbSNP
rs1486507568 2791 dbSNP
rs1032232092 2802 dbSNP
rs1001197542 2804 dbSNP
rs902470798 2818 dbSNP
rs989178904 2820 dbSNP
rs1425710565 2826 dbSNP
rs956031954 2829 dbSNP
rs758832875 2830 dbSNP
rs997453222 2837 dbSNP
rs35722627 2848 dbSNP
rs964523521 2856 dbSNP
rs1278858036 2863 dbSNP
rs1207305781 2870 dbSNP
rs1300566298 2875 dbSNP
rs750752952 2881 dbSNP
rs1380718416 2885 dbSNP
rs145801963 2891 dbSNP
rs528021883 2894 dbSNP
rs1274093509 2923 dbSNP
rs11218949 2927 dbSNP
rs1270481927 2934 dbSNP
rs746277343 2936 dbSNP
rs1210032227 2938 dbSNP
rs1039114928 2943 dbSNP
rs765650133 2946 dbSNP
rs943514609 2947 dbSNP
rs993538113 2958 dbSNP
rs1471763961 2965 dbSNP
rs1311009004 2967 dbSNP
rs1431614954 2975 dbSNP
rs1408531198 2978 dbSNP
rs541777416 2995 dbSNP
rs1173888189 3000 dbSNP
rs1049276406 3005 dbSNP
rs1480942590 3031 dbSNP
rs1306915913 3032 dbSNP
rs149861768 3037 dbSNP
rs1290523506 3062 dbSNP
rs919553701 3062 dbSNP
rs972797332 3089 dbSNP
rs1219103017 3098 dbSNP
rs140005474 3104 dbSNP
rs1423607304 3108 dbSNP
rs1482196427 3126 dbSNP
rs1184621731 3131 dbSNP
rs1233188679 3132 dbSNP
rs1189359216 3134 dbSNP
rs914606366 3137 dbSNP
rs917648699 3158 dbSNP
rs1454701850 3163 dbSNP
rs1184959897 3167 dbSNP
rs988923736 3168 dbSNP
rs544416112 3170 dbSNP
rs1368167004 3175 dbSNP
rs1431190569 3185 dbSNP
rs1483689804 3197 dbSNP
rs576165605 3198 dbSNP
rs1257329567 3219 dbSNP
rs1329150603 3228 dbSNP
rs1251139684 3236 dbSNP
rs1194171880 3238 dbSNP
rs1358687303 3239 dbSNP
rs1266267439 3243 dbSNP
rs990581893 3250 dbSNP
rs1436164185 3256 dbSNP
rs763480719 3261 dbSNP
rs959157299 3262 dbSNP
rs557715033 3268 dbSNP
rs923291453 3274 dbSNP
rs1235762102 3282 dbSNP
rs546111211 3282 dbSNP
rs779219608 3284 dbSNP
rs1207502623 3287 dbSNP
rs570391631 3288 dbSNP
rs925107911 3288 dbSNP
rs1451293266 3290 dbSNP
rs11218948 3296 dbSNP
rs775109482 3298 dbSNP
rs1361 3299 dbSNP
rs1020896312 3300 dbSNP
rs1187866009 3309 dbSNP
rs1387731933 3310 dbSNP
rs997903892 3314 dbSNP
rs1168029457 3317 dbSNP
rs1232070590 3321 dbSNP
rs1321987596 3334 dbSNP
rs1351087054 3344 dbSNP
rs966033380 3346 dbSNP
rs1026457223 3348 dbSNP
rs1320502816 3357 dbSNP
rs1363072484 3358 dbSNP
rs3763896 3369 dbSNP
rs567978062 3371 dbSNP
rs1270896771 3378 dbSNP
rs146628380 3385 dbSNP
rs1163460281 3387 dbSNP
rs1056090314 3394 dbSNP
rs186278265 3397 dbSNP
rs1335259620 3398 dbSNP
rs571018122 3398 dbSNP
rs1207985612 3399 dbSNP
rs768621540 3403 dbSNP
rs1466234809 3406 dbSNP
rs181572505 3415 dbSNP
rs1049687702 3416 dbSNP
rs1473175955 3422 dbSNP
rs993710171 3424 dbSNP
rs1471569938 3435 dbSNP
rs898053418 3441 dbSNP
rs534130499 3443 dbSNP
rs1158945912 3451 dbSNP
rs1453415599 3452 dbSNP
rs774071667 3462 dbSNP
rs1384481987 3463 dbSNP
rs1318985528 3468 dbSNP
rs144205277 3471 dbSNP
rs1268215758 3487 dbSNP
rs1209464443 3488 dbSNP
rs1467343581 3489 dbSNP
rs548417679 3493 dbSNP
rs1230029799 3494 dbSNP
rs937739521 3500 dbSNP
rs1266071834 3502 dbSNP
rs1352740476 3512 dbSNP
rs1329735323 3519 dbSNP
rs1277227909 3522 dbSNP
rs1278894917 3523 dbSNP
rs1257744847 3524 dbSNP
rs1472088730 3529 dbSNP
rs893322820 3536 dbSNP
rs1053595763 3543 dbSNP
rs548489312 3544 dbSNP
rs925089371 3547 dbSNP
rs1159674585 3550 dbSNP
rs1401534509 3555 dbSNP
rs934762411 3557 dbSNP
rs1314894356 3561 dbSNP
rs923260310 3562 dbSNP
rs1323687141 3564 dbSNP
rs1409511421 3573 dbSNP
rs1439675464 3575 dbSNP
rs976121973 3579 dbSNP
rs1239622480 3581 dbSNP
rs113194567 3587 dbSNP
rs1342836703 3590 dbSNP
rs979661201 3594 dbSNP
rs752893322 3600 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucgguCGGUUGAGUGUCACGUCu 5'
               || ::|| : ||||||| 
Target 5' -----GCAGGCU-GGAGUGCAGu 3'
1 - 17
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000448775.2 | 3UTR | GCAGGCUGGAGUGCAGUGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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