pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CEP97   
Synonyms 2810403B08Rik, LRRIQ2
Description centrosomal protein 97
Transcript NM_024548   
Expression
Putative miRNA Targets on CEP97
3'UTR of CEP97
(miRNA target sites are highlighted)
>CEP97|NM_024548|3'UTR
   1 CATGTCTTTTGGGAGGCAGATATCCACTTAACTTTTCTTAAAAATACTTTCAGTTGCCTTTGCTTTTTTTTGGAGGGAAA
  81 TACTCCCTACCCCTAATTTTGTTACTACTTATATAGAATTTGTATTCATGTCTTATATTTTTCAGATTCTAGATATTGAG
 161 CTGAGTTTTCATTTTGATTTTGTTAGCTTTTTACTTAGCTGTAAGGTACCAAACTATTTATATTGAAAGCTATATGCACT
 241 TTATTTCTTAACTGAATTGCATCAACAATGTTCCTGTTTCTTTCATGTACTCATTTACTTTCAAAAATAAGCTAGAATAT
 321 ATTAAAGAAAATAGAAAAAATTACCTTAAATATATAAATAAGAGAATTTTGGCCCTTCTGTGTCTGAGAAAATTAATTAT
 401 ATAGCAAGGAATGAAATTTGATAAAGCAAATATAAATGAGAAATATGAGGATTGTGAATTATTGAAATTTGCCAGTCTCC
 481 CTGGTGTAAAATGTTTTTTTAAAGCCTTTTTTCCTCCTTTCGGAGTCAAGGAAAGCCTTTCTATAAGCAAATTAAGGAAG
 561 AAAAGGTAGGATTATAAGATTTCTCAATGGGGATGATTAAATTGTCTCATGGAAAACTTCAGTTAATGTCATGCATCAGT
 641 TTTAACATATGAAGTAAAGTGTTCTATCCAGGATTAAAGTCAAGTTTACTTAGGCAACACAAGAATATTTCACTTAGATA
 721 TGAAGAAAGGAAACACTAGTCTCCATTCACTTGAAATACTCTCATGGCAAATATTTATCCTCTCATTAAGTGCTTTTTCA
 801 CCCTATAGGTAAGCATTTTTGTGCCAACATGTTGTCAGAAATTAATGTATGTTCATCTCCTCTGTTCCTGCTTATTTTTA
 881 CTTATATATTTCAGCAGAAGGTCCGTGGCCATTCACTTCAATTTTGACCTCTGTCCCATAGTGAAGAACATTTAAAGTAA
 961 TACTACTGGTCGAATATGAATGACTTTTTAGGAACTACTTTTTGTCTAACCTGAAAAAGTTCCACATTTGGAAGACAATT
1041 TAATGATGGTGAAGAAATAATAAACCTCACTTTACTTGTTAAAAGGGATATATATATATATATATATGTCTGCAACTTCA
1121 GGGAGAAATAAGATTGTGTTTGAATATTGTAGGTAGATGCATTTGTAATTAAGGATAATATCGTTTAACAACATGTATTT
1201 GGTTTCCCTCAACTTACAGACATACAGCTATTTAAAACTATGGCAATACTTAAGCATCTCTAAATTTAGGTGCTAAATAT
1281 CTATTATTCTGTTGTAGTCATTAGGTGCCCTTCTCTGAAGTTATGTAAAATAAAAGCATCTGATCCTTCAAGGATAAAGT
1361 TGAGGATCACATGGTACGTGGCATTTGTTGTTATTGTTTTTTAAAGAGATGGAGGCTGGCTCTGTTGGTGCGGTGCCATG
1441 ATCATAGTTCACTATAACCTCGAACTCCTGGCTCAAGTGATCTCCCACTTCAGCCTCCCGAGTATCTGGGATTATAAGCA
1521 AGAGCCACTGCTCCCAGCTCATGGTATTTGTTGATAGTCATAACATTTTTCCTGTATGGTAAGACGTATTTTTCTCAGTT
1601 TATAAATACGTAGCACTCAGGTTGAGACGACTTGGATTTTATTCTTAGAAATCCAGAATCCCTTGAAAAGGAAATATTTT
1681 CTGTTTCTTATAAATAAAAGAGTAATCTTACTTTCAGAAGGATTTTCCTTAGTGAAACATGTGTAACATTGAATGCATGT
1761 TAAATAAAAATGGAATTTCTAACTTTTTTTCAATAGTGCTAATTATCTTTTCTGAATGATTTTGAATGTCTTCTTAAATA
1841 TACCCTATTTTTCTATTTTAAAGTTAAGTGCCTCACTTGCTGTCCATAGTTAGACAAAGAAAAACCAATTTCCACTGCAC
1921 TAGTACCAAAATACTACTTTATACATTAGTTTTTCATAAAAGCTGCTGGAATGTCATGATTCAGTATTACCTAAATAGAT
2001 TTCTGCTAAAATCCTCTCCCTCCTGTCTTTTTTAAGTTATGGAAAAACACAACTAAATTCATTTGATCATCAGCACTTGT
2081 TAGCAGGATTTCCTTTTTTACCTTTGCCTTGTTTCTTTAGCCCACAAATAGTACTCAGCATACTTTCATTAAAAATTTGG
2161 CACAATATGATAATTGTTAATATTCTGTTCTTCGTCTGTGTTTTATTTAACTTTTACTAGTGTTTAGAAGTGCAAGAATA
2241 TTAAATAGCCCCTTCCTTAACTGTACATATTATCTTGAATGTAGATAAAATGAAAATACTGTAAATTAGAGTGTAGGAAA
2321 ACTGGCATAGAGTTAATATATTTTAATGGGTTTACATTATACTTTAAAAGTAATTTATATAATTAAAATATTTGGTTTTA
2401 ACTCTATGGGCTATTCTTTGGTTGGCTGAAGAGGGAATGGGTCTAGTAAGGTTTGGAAAGTTAAGCTTTGAACATGGTCT
2481 TTGTGTTTTTTTCCTAACAAGGAAAGGTTTAGTTCAGCTGTGCTATTTTAGTACACATCAGTTCTCTTGATTTATGGAAG
2561 ATTCAGTTTATCAATTAAGAATTCCTGCAGAAGCACAGAATCATACCATGTAAGAGTTGGAAGGAAGCTTAAGAGATTTC
2641 TGTTCGAATCTCTTTGTTTCAAAGATGAAACTAAAGCACAGCATGTTAAATGACTTGTCTAAGTTATAGCTAGTTAGTAG
2721 TAAATAAACTGAAAACCTATATGCTACTGTAGTCCAAAATTTTATTATGTCCTCTTAATCTTTACATTTAGTGAGTCAGT
2801 AAGGAAATCTCTGCATATTTCTCATTCTCTTTGAAAGAGGAAAAAAACTTCTAAGAGAGCTACAACTCTATCACTCATGA
2881 CAGAGTTGCTTGTAGAAAATAACTAATTCCTTCAGAACCCTGAGTGAATTTTTTCTAAGAAATGTGACTTGATTAAAATG
2961 GTTTCAAAAGAGCAATAGTGGAAATTAAAGTTTTAGAAAAGAGACCTGGCGTGGTGGTTGACAACTGTAATCCCAGTGCT
3041 TTGGGAGGCTGAGGCCAGAGGATCACTTGAGGCCAGGAGTTCAAGACCAGCCTGGACAACATAGCAAGACCCCCCTCTCT
3121 ACAAAAAAAATTTTTTTCTGAAAAGAATAAGTACATTTTAGAGTCCATTTATTTGACGACAGGCAGTATGACAGGTTGCT
3201 GAGGTATATAAAATTTTCTAGAGAAATGCTGAGTTTGATGACATTTTATCTTCAGTTTTGTAGAACAGATGTTAAAATGT
3281 TAACTCTCCTGGTGTGCAGAAAGCTGTAATCATGACAGTTGATAATATGCAATTTAGTTTGATTTTATAGGTTTAATTAT
3361 AAAAGGCTTCACAATATGCATGTTTTAGGAAAATGTTCATTTATTTAGTCATATAATCGTTTGTATATATGTAAATAACT
3441 TTATTCTGGAATAATGTGGGTGCCATCTTGAGCGTGTGTTTTTATCTGTTTTGGATTATTTTTTGTATACAAACACCATA
3521 ATACTGTATTTTCCTGTTATCTACTTAAGTCTAGTTCTACTTTTTCCCAATAATTTCAGGAAAATACAAGCTTGAGATAT
3601 TATACTATCTCCCTTGGTATTTTTTGTGTGCAAAGTCTTAGAATTGGATTTATAACATTGATAATAAAAATATAAAACGT
3681 TTTTCCTCGGGAGTTAAGATGGTAAAAAGAAAAAAATAGAATGAATATGATCATTTCTCCATCATAAAGGAAAGAAGAGA
3761 CTTCATTGTGTGTGTGTTTTTTTTTTTTTTTTCGAGATAGAGTTTCACTGTTGTCACCCAGGCTGGTCTCAGCTCACTGC
3841 AACCTCCACTTCCTGGGTACAAGCGATTCTCCTGCCTCAGCTTCCTGTGTAGCTGGGATTACAGGTGTGCAACCACAAGG
3921 CTCGGCTAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAA
4001 GTGATCCACCCACCTCGGCCTCGCAAAGTGCTGAGATTACAGGTGTGAGCCACTGTGCCCAGCCGAGACTTCATTGTTTA
4081 ATGTATATTTTTATTTTTTCCAAACACCAGCTCGAATCAGAGTATATTTTTATTTTGCCACATACCTTTAAAAGGTATTT
4161 ATTGTGTCATAATGTTTTAAATGTTAAATATATGATACCCTCATTCATGAAGTGAAGCAGAAAGGGTCTGTAAGGAACAT
4241 TCTAAACATTTTTAATGATATTGCTTTTACTGATCAAGCTTGTTGTGCCATATTAAAATTAAAAGTCAAATAAACAAAGC
4321 AGTCCTCACAGCCTTGGAAAGAAATAGATAATTGTCTTCTTAAGATGAGGTGCTTTTTATCTGTGGATGAATGGAAATCA
4401 CACTGAATTTTAATTCTTATTTATTTTAGTGGATAGCAGGAATCACTCTGTAGTAGTTGTGTTCATTTTCTTTTCTTTTT
4481 CTTTTCTTTTTTTTGAGAGAGTCTCGCTCTGTCACCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCCA
4561 TCTCCTGGGTTCAAGTGATTCTCCTGCCTCATCCTCCCGAGTAGCTAAGACTACAGGCACACGCCACCATGCCCAGCTAA
4641 TTTTTATATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCAATCTCTTGACCTCGTGATCCACCCAG
4721 TTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTACACCTGGCCTTGTTCATCTTCTAATTAAATATCTTTGA
4801 ATGTTTTGTAATAATTTTAATGTTGACAATAAGAGTTTAAAAATAATTTGATTTTGGACTGTATTTAGATTTCTCTTTAA
4881 TTTTGCTGTAGAAATAGTAAATGATTTAAAGTGGTTATGATGTGTTTTATGAAGGCTTACTATTTTATATTGTACTTATT
4961 TAATTTGTATTTGAGTCTGTCTAATTTTAAATAAAAGGTTTATACATTTGA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugacGUCGGAACUGGAGGGUc 5'
              ||| :|||:||||||| 
Target 5' caccCAG-TTTGGCCTCCCAa 3'
4714 - 4733 164.00 -21.60
2
miRNA  3' ugACGUCGGA----ACUGGAGGGUc 5'
            | | | ||    |||:|||||| 
Target 5' acTCCTGGCTCAAGTGATCTCCCAc 3'
1464 - 1488 141.00 -17.90
3
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            | | ||||   ||||||: 
Target 5' tcTCCTGCCTCATCCTCCCGa 3'
4580 - 4600 139.00 -20.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN8487805 7 COSMIC
COSN30482539 26 COSMIC
COSN30154800 47 COSMIC
COSN30178815 63 COSMIC
COSN18727416 72 COSMIC
COSN30506718 72 COSMIC
COSN26970471 77 COSMIC
COSN31576977 103 COSMIC
COSN31546987 117 COSMIC
COSN30106360 119 COSMIC
COSN31545595 177 COSMIC
COSN31556905 238 COSMIC
COSN9732216 402 COSMIC
COSN31568690 416 COSMIC
COSN8361291 439 COSMIC
COSN22738871 523 COSMIC
COSN7548401 633 COSMIC
COSN22577343 731 COSMIC
COSN26565268 902 COSMIC
COSN24300081 1075 COSMIC
COSN20098799 1107 COSMIC
COSN20098798 1108 COSMIC
COSN25405220 1398 COSMIC
COSN29395215 1459 COSMIC
COSN32063894 1619 COSMIC
COSN1902029 1737 COSMIC
COSN20781169 2061 COSMIC
COSN7548402 2268 COSMIC
COSN9107517 2561 COSMIC
COSN16507762 3129 COSMIC
COSN17245763 3133 COSMIC
COSN9732217 3458 COSMIC
COSN20265902 3655 COSMIC
COSN23870488 3879 COSMIC
COSN25702756 3925 COSMIC
COSN9732218 3930 COSMIC
COSN1902030 3994 COSMIC
COSN4996152 4962 COSMIC
COSN15301238 4999 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs373512454 2 dbSNP
rs201988050 4 dbSNP
rs1418795534 7 dbSNP
rs748177072 11 dbSNP
rs1460760326 16 dbSNP
rs772130647 17 dbSNP
rs1402455427 18 dbSNP
rs181347869 24 dbSNP
rs769041935 24 dbSNP
rs776453554 28 dbSNP
rs1448503808 29 dbSNP
rs1312201457 30 dbSNP
rs759427281 31 dbSNP
rs1229001578 34 dbSNP
rs1338333769 36 dbSNP
rs765056137 37 dbSNP
rs1486573218 45 dbSNP
rs1260516146 51 dbSNP
rs930058433 62 dbSNP
rs1359793149 63 dbSNP
rs1294385140 64 dbSNP
rs1192460347 65 dbSNP
rs1321601469 69 dbSNP
rs1425354224 81 dbSNP
rs1296950701 89 dbSNP
rs1413570611 89 dbSNP
rs1047630985 102 dbSNP
rs1359964967 108 dbSNP
rs1297741048 114 dbSNP
rs907194139 115 dbSNP
rs1405771968 116 dbSNP
rs948193733 130 dbSNP
rs1165201432 133 dbSNP
rs1456224409 135 dbSNP
rs1049335365 137 dbSNP
rs569981113 138 dbSNP
rs537384063 139 dbSNP
rs1002884048 150 dbSNP
rs887993806 151 dbSNP
rs926787706 153 dbSNP
rs1422031711 157 dbSNP
rs1299398536 162 dbSNP
rs943072559 162 dbSNP
rs1015672776 163 dbSNP
rs558549719 187 dbSNP
rs1490402695 188 dbSNP
rs1270638792 203 dbSNP
rs1340479886 207 dbSNP
rs896932411 215 dbSNP
rs1488367903 217 dbSNP
rs894749847 225 dbSNP
rs576817998 230 dbSNP
rs1029392722 233 dbSNP
rs563439164 235 dbSNP
rs985660834 236 dbSNP
rs967971790 238 dbSNP
rs977864194 254 dbSNP
rs1031201049 260 dbSNP
rs1389753063 261 dbSNP
rs955007073 269 dbSNP
rs968360262 275 dbSNP
rs1398085581 279 dbSNP
rs145590054 288 dbSNP
rs986431553 303 dbSNP
rs911113185 309 dbSNP
rs552655089 310 dbSNP
rs942633540 328 dbSNP
rs923923929 335 dbSNP
rs978154883 335 dbSNP
rs1432307828 342 dbSNP
rs974421925 343 dbSNP
rs1456803802 355 dbSNP
rs756698386 363 dbSNP
rs919768473 375 dbSNP
rs1325777382 381 dbSNP
rs1487270816 383 dbSNP
rs1273235551 389 dbSNP
rs1223055865 394 dbSNP
rs1232804447 397 dbSNP
rs929833781 402 dbSNP
rs758611523 422 dbSNP
rs1049687617 428 dbSNP
rs909506899 433 dbSNP
rs1397963831 444 dbSNP
rs940921444 445 dbSNP
rs1036727946 448 dbSNP
rs1407647774 450 dbSNP
rs1047109494 455 dbSNP
rs896840058 463 dbSNP
rs1465210309 485 dbSNP
rs1364054466 487 dbSNP
rs997830744 492 dbSNP
rs1050835283 494 dbSNP
rs889507956 498 dbSNP
rs907285213 502 dbSNP
rs1463104231 507 dbSNP
rs1006757142 508 dbSNP
rs1276575607 514 dbSNP
rs185942488 522 dbSNP
rs938642384 523 dbSNP
rs1262738229 531 dbSNP
rs1241975397 537 dbSNP
rs780299083 544 dbSNP
rs1308345436 548 dbSNP
rs1453265977 563 dbSNP
rs1441882108 566 dbSNP
rs968013851 567 dbSNP
rs938141558 571 dbSNP
rs1331583514 573 dbSNP
rs999836483 586 dbSNP
rs1385170224 590 dbSNP
rs1360381172 591 dbSNP
rs1055818602 599 dbSNP
rs894511277 603 dbSNP
rs1011815341 617 dbSNP
rs1022331699 635 dbSNP
rs1350579794 640 dbSNP
rs542036881 651 dbSNP
rs751903178 655 dbSNP
rs999435451 656 dbSNP
rs750039134 666 dbSNP
rs1447668843 671 dbSNP
rs1264040419 677 dbSNP
rs1379433922 684 dbSNP
rs1214717528 685 dbSNP
rs1030709921 700 dbSNP
rs1240520566 708 dbSNP
rs1246487474 723 dbSNP
rs1308276479 726 dbSNP
rs955142439 734 dbSNP
rs1282381938 742 dbSNP
rs755360894 744 dbSNP
rs1017877163 746 dbSNP
rs1351403885 752 dbSNP
rs1242903842 755 dbSNP
rs563576628 764 dbSNP
rs1326514943 790 dbSNP
rs963720220 803 dbSNP
rs565764573 806 dbSNP
rs530990699 816 dbSNP
rs1289939473 825 dbSNP
rs1450592688 827 dbSNP
rs984999809 830 dbSNP
rs376498088 832 dbSNP
rs909358798 835 dbSNP
rs1218774308 836 dbSNP
rs1163192651 851 dbSNP
rs1476064813 857 dbSNP
rs1239541299 858 dbSNP
rs951208470 861 dbSNP
rs1191656376 867 dbSNP
rs983042053 868 dbSNP
rs189840814 884 dbSNP
rs564613039 886 dbSNP
rs1036636674 900 dbSNP
rs183158784 905 dbSNP
rs1287566151 906 dbSNP
rs1179635884 909 dbSNP
rs1055909387 922 dbSNP
rs541768044 922 dbSNP
rs915913796 939 dbSNP
rs1216299598 958 dbSNP
rs1339400915 966 dbSNP
rs546628606 972 dbSNP
rs568588232 973 dbSNP
rs1348493927 981 dbSNP
rs1165557394 985 dbSNP
rs1415185737 988 dbSNP
rs1404798124 996 dbSNP
rs147739198 1008 dbSNP
rs187931180 1009 dbSNP
rs1403134036 1014 dbSNP
rs1168569850 1026 dbSNP
rs1477547218 1029 dbSNP
rs1430182003 1031 dbSNP
rs1201871181 1033 dbSNP
rs1325328607 1037 dbSNP
rs1244754402 1039 dbSNP
rs1220619562 1053 dbSNP
rs79326900 1067 dbSNP
rs1402656789 1068 dbSNP
rs1438294666 1069 dbSNP
rs1447872556 1069 dbSNP
rs1259953798 1072 dbSNP
rs1196156857 1078 dbSNP
rs62284204 1085 dbSNP
rs1443421586 1088 dbSNP
rs369025672 1088 dbSNP
rs374769023 1088 dbSNP
rs776781828 1088 dbSNP
rs569893335 1089 dbSNP
rs769290829 1090 dbSNP
rs1406922130 1097 dbSNP
rs1178402447 1101 dbSNP
rs536849142 1101 dbSNP
rs868399350 1105 dbSNP
rs1246872947 1108 dbSNP
rs3039557 1108 dbSNP
rs1424778191 1109 dbSNP
rs1190373073 1111 dbSNP
rs1284663264 1112 dbSNP
rs533821362 1116 dbSNP
rs1239859506 1120 dbSNP
rs903437668 1123 dbSNP
rs1355598189 1126 dbSNP
rs1226057960 1152 dbSNP
rs1263193775 1173 dbSNP
rs1211665623 1176 dbSNP
rs756506171 1179 dbSNP
rs371873930 1181 dbSNP
rs1043593698 1182 dbSNP
rs903697437 1183 dbSNP
rs999291089 1184 dbSNP
rs1307620588 1203 dbSNP
rs1237930912 1214 dbSNP
rs1436381953 1217 dbSNP
rs1190085367 1222 dbSNP
rs149230588 1223 dbSNP
rs960577699 1226 dbSNP
rs1052377476 1235 dbSNP
rs1472766392 1239 dbSNP
rs890653146 1240 dbSNP
rs1445955475 1245 dbSNP
rs1162862280 1254 dbSNP
rs777135746 1255 dbSNP
rs190472996 1265 dbSNP
rs1421823989 1269 dbSNP
rs963647201 1278 dbSNP
rs1394637098 1282 dbSNP
rs534636771 1292 dbSNP
rs1256812429 1299 dbSNP
rs1056574036 1310 dbSNP
rs1481994585 1313 dbSNP
rs1236462439 1325 dbSNP
rs1216884159 1326 dbSNP
rs909277727 1331 dbSNP
rs370309238 1337 dbSNP
rs373031757 1339 dbSNP
rs1489101750 1341 dbSNP
rs1334576461 1342 dbSNP
rs1239932535 1349 dbSNP
rs552517841 1355 dbSNP
rs1339786910 1358 dbSNP
rs962527575 1360 dbSNP
rs1226621079 1365 dbSNP
rs972194499 1366 dbSNP
rs1289579635 1371 dbSNP
rs1402052452 1372 dbSNP
rs183507099 1374 dbSNP
rs115732792 1378 dbSNP
rs1418887974 1379 dbSNP
rs986487850 1387 dbSNP
rs982746785 1388 dbSNP
rs377738974 1395 dbSNP
rs942351253 1396 dbSNP
rs1255717341 1404 dbSNP
rs959902924 1407 dbSNP
rs1489050926 1423 dbSNP
rs1043885309 1425 dbSNP
rs575837390 1432 dbSNP
rs774168167 1433 dbSNP
rs947371637 1439 dbSNP
rs1267685393 1440 dbSNP
rs1043470028 1452 dbSNP
rs1321696474 1463 dbSNP
rs935172456 1465 dbSNP
rs1220575720 1470 dbSNP
rs1338641530 1492 dbSNP
rs1052217685 1498 dbSNP
rs759362640 1500 dbSNP
rs934895492 1501 dbSNP
rs1295133387 1532 dbSNP
rs771766313 1554 dbSNP
rs905211719 1561 dbSNP
rs1051990971 1562 dbSNP
rs546037775 1563 dbSNP
rs1478163122 1575 dbSNP
rs1269885384 1576 dbSNP
rs1189879129 1586 dbSNP
rs1007689271 1587 dbSNP
rs1259288994 1602 dbSNP
rs545345342 1610 dbSNP
rs899609056 1611 dbSNP
rs1257576332 1615 dbSNP
rs528749785 1629 dbSNP
rs563746651 1630 dbSNP
rs1432757861 1653 dbSNP
rs6764700 1656 dbSNP
rs1004537089 1675 dbSNP
rs1466671991 1676 dbSNP
rs1035644064 1682 dbSNP
rs1341088183 1684 dbSNP
rs1169398894 1689 dbSNP
rs1398776282 1693 dbSNP
rs1379602550 1696 dbSNP
rs986393046 1696 dbSNP
rs1379037051 1698 dbSNP
rs1292839240 1700 dbSNP
rs1197139318 1705 dbSNP
rs959828982 1715 dbSNP
rs942362267 1716 dbSNP
rs542298347 1739 dbSNP
rs536455375 1744 dbSNP
rs188396206 1748 dbSNP
rs969222022 1750 dbSNP
rs979086615 1754 dbSNP
rs1201151864 1757 dbSNP
rs1347677353 1759 dbSNP
rs978898626 1763 dbSNP
rs1209209107 1784 dbSNP
rs545912852 1784 dbSNP
rs935064690 1784 dbSNP
rs896337537 1791 dbSNP
rs112906893 1799 dbSNP
rs57874127 1818 dbSNP
rs1330042624 1820 dbSNP
rs1045392078 1821 dbSNP
rs1403826064 1823 dbSNP
rs905076692 1835 dbSNP
rs1006670891 1840 dbSNP
rs1381296274 1842 dbSNP
rs934713111 1843 dbSNP
rs529281544 1844 dbSNP
rs750443336 1849 dbSNP
rs897933812 1856 dbSNP
rs551142053 1864 dbSNP
rs1444213990 1869 dbSNP
rs1254259862 1872 dbSNP
rs1199908715 1885 dbSNP
rs912147132 1887 dbSNP
rs1488774226 1889 dbSNP
rs1286426609 1899 dbSNP
rs1242088258 1907 dbSNP
rs1351353707 1909 dbSNP
rs763073686 1916 dbSNP
rs1244793230 1917 dbSNP
rs1039188985 1924 dbSNP
rs899358038 1926 dbSNP
rs1377304653 1938 dbSNP
rs954875991 1952 dbSNP
rs986276390 1966 dbSNP
rs562961344 1968 dbSNP
rs1418283514 1970 dbSNP
rs1048179760 1976 dbSNP
rs968988729 1977 dbSNP
rs530736013 1986 dbSNP
rs1474098688 2005 dbSNP
rs1366784831 2015 dbSNP
rs1361026023 2016 dbSNP
rs1186981691 2023 dbSNP
rs979532105 2026 dbSNP
rs1286608319 2028 dbSNP
rs1265640675 2047 dbSNP
rs886769020 2064 dbSNP
rs1218444185 2066 dbSNP
rs924960035 2075 dbSNP
rs751813439 2082 dbSNP
rs1283375106 2101 dbSNP
rs1210344855 2116 dbSNP
rs1392308702 2121 dbSNP
rs956345726 2125 dbSNP
rs1232186513 2128 dbSNP
rs987869370 2129 dbSNP
rs917628546 2132 dbSNP
rs374541011 2134 dbSNP
rs1003892684 2138 dbSNP
rs1035569197 2148 dbSNP
rs895755768 2150 dbSNP
rs1044900512 2153 dbSNP
rs1164239227 2158 dbSNP
rs1012728116 2161 dbSNP
rs755270863 2166 dbSNP
rs1232468867 2167 dbSNP
rs1425966876 2167 dbSNP
rs150530683 2192 dbSNP
rs534682710 2192 dbSNP
rs1355040588 2194 dbSNP
rs367865389 2195 dbSNP
rs1259014219 2197 dbSNP
rs1287674537 2199 dbSNP
rs1212464640 2206 dbSNP
rs1038133778 2223 dbSNP
rs552058783 2225 dbSNP
rs1210541253 2234 dbSNP
rs1360901461 2235 dbSNP
rs968604981 2241 dbSNP
rs1439076896 2249 dbSNP
rs993471774 2250 dbSNP
rs979253050 2253 dbSNP
rs1329796468 2256 dbSNP
rs1031763259 2257 dbSNP
rs1467320627 2258 dbSNP
rs1180262561 2262 dbSNP
rs1325828307 2264 dbSNP
rs1051851146 2268 dbSNP
rs1438975186 2270 dbSNP
rs956194627 2281 dbSNP
rs1168679269 2283 dbSNP
rs1409570945 2293 dbSNP
rs1426180589 2295 dbSNP
rs1156899179 2300 dbSNP
rs1370146242 2308 dbSNP
rs781425304 2308 dbSNP
rs1478896721 2310 dbSNP
rs192861814 2312 dbSNP
rs943609506 2314 dbSNP
rs1458204792 2316 dbSNP
rs1008175167 2329 dbSNP
rs974987690 2331 dbSNP
rs1306508764 2341 dbSNP
rs142505306 2350 dbSNP
rs1221227970 2352 dbSNP
rs969405785 2357 dbSNP
rs377402286 2379 dbSNP
rs1413508805 2390 dbSNP
rs930863282 2396 dbSNP
rs1387459772 2402 dbSNP
rs1448134894 2404 dbSNP
rs1000465692 2407 dbSNP
rs1031861779 2408 dbSNP
rs769242641 2414 dbSNP
rs1359906724 2417 dbSNP
rs956376787 2425 dbSNP
rs1393023911 2470 dbSNP
rs917701820 2474 dbSNP
rs1440205020 2475 dbSNP
rs562116517 2477 dbSNP
rs908290259 2480 dbSNP
rs939645567 2483 dbSNP
rs1237615994 2484 dbSNP
rs1211779362 2485 dbSNP
rs941827043 2486 dbSNP
rs1280019579 2497 dbSNP
rs546469858 2499 dbSNP
rs1391197343 2500 dbSNP
rs1037640921 2506 dbSNP
rs1223229075 2524 dbSNP
rs13066768 2526 dbSNP
rs1324032428 2536 dbSNP
rs1245536900 2538 dbSNP
rs895513290 2550 dbSNP
rs929299074 2555 dbSNP
rs201677727 2558 dbSNP
rs778393948 2558 dbSNP
rs1312006295 2569 dbSNP
rs1420093653 2570 dbSNP
rs748758084 2575 dbSNP
rs1362305204 2584 dbSNP
rs1238540117 2601 dbSNP
rs1418490952 2604 dbSNP
rs1413853505 2609 dbSNP
rs890583912 2610 dbSNP
rs1007631209 2611 dbSNP
rs1217733752 2614 dbSNP
rs1012821257 2624 dbSNP
rs1489479721 2632 dbSNP
rs1284412921 2641 dbSNP
rs770594423 2646 dbSNP
rs1322903811 2647 dbSNP
rs1044359697 2653 dbSNP
rs904321370 2655 dbSNP
rs77225242 2663 dbSNP
rs1354991711 2666 dbSNP
rs1279081648 2679 dbSNP
rs904709011 2680 dbSNP
rs772034325 2684 dbSNP
rs1342127209 2685 dbSNP
rs770591273 2685 dbSNP
rs1452927702 2696 dbSNP
rs1163449827 2700 dbSNP
rs527435492 2701 dbSNP
rs150933604 2711 dbSNP
rs1032148147 2713 dbSNP
rs1466839686 2715 dbSNP
rs956161091 2719 dbSNP
rs1170882702 2721 dbSNP
rs1166223831 2730 dbSNP
rs1399129226 2732 dbSNP
rs1008963842 2737 dbSNP
rs1193932639 2740 dbSNP
rs1031894296 2750 dbSNP
rs569419094 2751 dbSNP
rs1186340934 2754 dbSNP
rs1489070914 2769 dbSNP
rs1267780218 2770 dbSNP
rs1381953880 2775 dbSNP
rs1397190269 2779 dbSNP
rs1334248076 2781 dbSNP
rs1292744132 2786 dbSNP
rs556645323 2799 dbSNP
rs964718885 2806 dbSNP
rs1353706334 2819 dbSNP
rs539951066 2822 dbSNP
rs1258861513 2835 dbSNP
rs974955146 2839 dbSNP
rs575199558 2860 dbSNP
rs1009229854 2864 dbSNP
rs1024580295 2866 dbSNP
rs866358182 2875 dbSNP
rs1368141383 2884 dbSNP
rs1295227159 2887 dbSNP
rs1257589707 2904 dbSNP
rs1170837677 2905 dbSNP
rs778639939 2908 dbSNP
rs980557828 2910 dbSNP
rs1187211809 2914 dbSNP
rs1033821643 2916 dbSNP
rs1434133619 2917 dbSNP
rs1478479913 2918 dbSNP
rs983657923 2919 dbSNP
rs908261204 2920 dbSNP
rs1468464655 2927 dbSNP
rs973198683 2934 dbSNP
rs919208431 2938 dbSNP
rs1337637133 2946 dbSNP
rs939740756 2951 dbSNP
rs745527344 2954 dbSNP
rs1226337554 2977 dbSNP
rs1193795515 2980 dbSNP
rs1312556021 2982 dbSNP
rs929205787 2998 dbSNP
rs987492883 3003 dbSNP
rs540043733 3005 dbSNP
rs911909380 3006 dbSNP
rs551767616 3007 dbSNP
rs916917448 3011 dbSNP
rs1393802578 3012 dbSNP
rs569728823 3012 dbSNP
rs184840387 3015 dbSNP
rs1443916310 3024 dbSNP
rs943342006 3025 dbSNP
rs1044666159 3033 dbSNP
rs1361330622 3038 dbSNP
rs904457070 3046 dbSNP
rs1381498766 3049 dbSNP
rs573369001 3060 dbSNP
rs1374176362 3068 dbSNP
rs773554284 3072 dbSNP
rs760746114 3084 dbSNP
rs1201236463 3088 dbSNP
rs1278938440 3089 dbSNP
rs1361499048 3096 dbSNP
rs114718981 3100 dbSNP
rs1282159312 3103 dbSNP
rs936219366 3110 dbSNP
rs562366048 3112 dbSNP
rs1008932529 3114 dbSNP
rs1019017913 3115 dbSNP
rs1305727815 3116 dbSNP
rs1333462125 3116 dbSNP
rs1396216946 3117 dbSNP
rs200014984 3123 dbSNP
rs1403944851 3124 dbSNP
rs1209900231 3131 dbSNP
rs2611839 3132 dbSNP
rs544571121 3133 dbSNP
rs775139191 3134 dbSNP
rs952345085 3146 dbSNP
rs984138432 3152 dbSNP
rs908019209 3157 dbSNP
rs963449158 3162 dbSNP
rs960903558 3168 dbSNP
rs992570592 3169 dbSNP
rs186738839 3178 dbSNP
rs533236565 3182 dbSNP
rs534594498 3185 dbSNP
rs1173439684 3191 dbSNP
rs1206797441 3195 dbSNP
rs987404591 3214 dbSNP
rs1393752920 3219 dbSNP
rs1244910454 3226 dbSNP
rs1356910324 3234 dbSNP
rs1291062575 3241 dbSNP
rs979804570 3244 dbSNP
rs866100332 3249 dbSNP
rs1319026179 3255 dbSNP
rs1320748957 3272 dbSNP
rs1399433716 3276 dbSNP
rs367941984 3280 dbSNP
rs1344750854 3284 dbSNP
rs975143142 3284 dbSNP
rs1428744021 3289 dbSNP
rs140751787 3291 dbSNP
rs926100090 3292 dbSNP
rs1295443044 3293 dbSNP
rs1368614457 3294 dbSNP
rs936071374 3297 dbSNP
rs1195093143 3308 dbSNP
rs1445161503 3326 dbSNP
rs925637533 3339 dbSNP
rs1260972690 3341 dbSNP
rs1209842784 3342 dbSNP
rs1053247603 3343 dbSNP
rs1233234500 3344 dbSNP
rs1270790264 3345 dbSNP
rs1301042534 3348 dbSNP
rs144696861 3353 dbSNP
rs935913737 3354 dbSNP
rs1318202643 3363 dbSNP
rs950194984 3373 dbSNP
rs1429094111 3378 dbSNP
rs1045963589 3389 dbSNP
rs1324790513 3390 dbSNP
rs746857489 3397 dbSNP
rs906073423 3408 dbSNP
rs1392345201 3411 dbSNP
rs1001910486 3419 dbSNP
rs1282926351 3420 dbSNP
rs1474306290 3427 dbSNP
rs1033760899 3434 dbSNP
rs1199470905 3436 dbSNP
rs1469807100 3437 dbSNP
rs564157045 3438 dbSNP
rs994575532 3447 dbSNP
rs1053482806 3457 dbSNP
rs950533409 3468 dbSNP
rs1213112078 3471 dbSNP
rs1339138307 3473 dbSNP
rs891620456 3474 dbSNP
rs1246884619 3475 dbSNP
rs1237101361 3495 dbSNP
rs759457850 3498 dbSNP
rs1369466699 3499 dbSNP
rs944548115 3500 dbSNP
rs1008702811 3506 dbSNP
rs1040400195 3507 dbSNP
rs1467769374 3511 dbSNP
rs1193373741 3514 dbSNP
rs138648539 3517 dbSNP
rs964984871 3519 dbSNP
rs1159598652 3520 dbSNP
rs1418503392 3523 dbSNP
rs776575120 3525 dbSNP
rs762983810 3527 dbSNP
rs78136795 3537 dbSNP
rs1005133119 3541 dbSNP
rs1439782061 3544 dbSNP
rs567976426 3555 dbSNP
rs1167032950 3558 dbSNP
rs957341172 3570 dbSNP
rs774500423 3575 dbSNP
rs960831741 3584 dbSNP
rs1378912969 3591 dbSNP
rs1346265274 3598 dbSNP
rs992345255 3598 dbSNP
rs1303318508 3601 dbSNP
rs373657649 3604 dbSNP
rs1241587747 3608 dbSNP
rs78070847 3613 dbSNP
rs1277903783 3620 dbSNP
rs950225644 3622 dbSNP
rs759665929 3625 dbSNP
rs550129453 3632 dbSNP
rs1313211881 3634 dbSNP
rs13316216 3635 dbSNP
rs140329021 3644 dbSNP
rs935697819 3645 dbSNP
rs1409506901 3646 dbSNP
rs1175001688 3647 dbSNP
rs1196825174 3649 dbSNP
rs1469262346 3658 dbSNP
rs1257795224 3661 dbSNP
rs1190426701 3663 dbSNP
rs752744158 3663 dbSNP
rs988708876 3676 dbSNP
rs767847688 3679 dbSNP
rs752973808 3680 dbSNP
rs1319296243 3684 dbSNP
rs145490342 3689 dbSNP
rs1223315156 3690 dbSNP
rs1211507625 3691 dbSNP
rs1295356943 3701 dbSNP
rs1008776445 3705 dbSNP
rs1019177331 3708 dbSNP
rs28694790 3709 dbSNP
rs1346915332 3710 dbSNP
rs1454210539 3710 dbSNP
rs28376946 3710 dbSNP
rs547188109 3716 dbSNP
rs1399617491 3717 dbSNP
rs932068068 3724 dbSNP
rs1166629484 3725 dbSNP
rs1418031987 3725 dbSNP
rs1474048317 3726 dbSNP
rs1049652023 3728 dbSNP
rs1187504474 3730 dbSNP
rs1487109520 3737 dbSNP
rs887776849 3738 dbSNP
rs964689592 3740 dbSNP
rs1005300811 3742 dbSNP
rs1322405155 3747 dbSNP
rs1183642738 3765 dbSNP
rs1231665607 3767 dbSNP
rs996512241 3770 dbSNP
rs1292391710 3775 dbSNP
rs1260905167 3777 dbSNP
rs1363899315 3777 dbSNP
rs754209792 3777 dbSNP
rs1032902339 3778 dbSNP
rs1394545000 3778 dbSNP
rs1418752193 3779 dbSNP
rs1461107273 3780 dbSNP
rs957368729 3784 dbSNP
rs76874307 3786 dbSNP
rs13077925 3787 dbSNP
rs1417902926 3791 dbSNP
rs1186437157 3793 dbSNP
rs1327960084 3794 dbSNP
rs184905958 3795 dbSNP
rs1450172252 3796 dbSNP
rs1468156529 3799 dbSNP
rs1293361400 3807 dbSNP
rs971450740 3810 dbSNP
rs1309024894 3814 dbSNP
rs1354331530 3825 dbSNP
rs1230931790 3826 dbSNP
rs981656539 3833 dbSNP
rs1327275082 3841 dbSNP
rs1438096411 3845 dbSNP
rs1393195609 3852 dbSNP
rs1298391306 3854 dbSNP
rs1375683294 3855 dbSNP
rs138081815 3865 dbSNP
rs1015160921 3867 dbSNP
rs1353102641 3870 dbSNP
rs556741734 3882 dbSNP
rs149548250 3893 dbSNP
rs1039030457 3920 dbSNP
rs544634294 3922 dbSNP
rs562778026 3924 dbSNP
rs577950529 3925 dbSNP
rs1272794530 3927 dbSNP
rs1453863158 3931 dbSNP
rs920141724 3936 dbSNP
rs1197752333 3938 dbSNP
rs1023790670 3940 dbSNP
rs1477558345 3954 dbSNP
rs574952527 3957 dbSNP
rs1249360635 3972 dbSNP
rs930331696 3983 dbSNP
rs1258845137 3985 dbSNP
rs969997703 3986 dbSNP
rs764467747 3991 dbSNP
rs886215333 3997 dbSNP
rs944442699 4006 dbSNP
rs1040096547 4007 dbSNP
rs1185939794 4014 dbSNP
rs900354887 4018 dbSNP
rs545221073 4020 dbSNP
rs995982826 4023 dbSNP
rs189305628 4024 dbSNP
rs1377715962 4039 dbSNP
rs893045110 4043 dbSNP
rs1010230922 4044 dbSNP
rs1184115842 4053 dbSNP
rs1020222733 4054 dbSNP
rs971481956 4054 dbSNP
rs528283365 4074 dbSNP
rs539988672 4080 dbSNP
rs1033181071 4087 dbSNP
rs561667503 4108 dbSNP
rs1374810218 4114 dbSNP
rs1412332773 4115 dbSNP
rs144197571 4117 dbSNP
rs550834170 4119 dbSNP
rs1333553442 4120 dbSNP
rs1287314340 4124 dbSNP
rs1034399728 4143 dbSNP
rs568787687 4146 dbSNP
rs959135422 4147 dbSNP
rs974261347 4155 dbSNP
rs532938109 4171 dbSNP
rs1386342494 4175 dbSNP
rs1160316275 4182 dbSNP
rs920215330 4193 dbSNP
rs756767534 4199 dbSNP
rs1165910232 4200 dbSNP
rs1476339370 4201 dbSNP
rs1330019027 4203 dbSNP
rs1185575994 4219 dbSNP
rs1441725883 4221 dbSNP
rs1262346597 4226 dbSNP
rs778549966 4227 dbSNP
rs1269965387 4229 dbSNP
rs1347901628 4238 dbSNP
rs541717011 4262 dbSNP
rs983145788 4276 dbSNP
rs757952892 4277 dbSNP
rs779809162 4278 dbSNP
rs1336533290 4280 dbSNP
rs1291767723 4284 dbSNP
rs1244533093 4292 dbSNP
rs907554839 4301 dbSNP
rs746736142 4303 dbSNP
rs1320844635 4310 dbSNP
rs1337791595 4312 dbSNP
rs1381080414 4312 dbSNP
rs921766988 4316 dbSNP
rs931842858 4319 dbSNP
rs566521130 4324 dbSNP
rs1162461512 4333 dbSNP
rs1040527924 4334 dbSNP
rs534415943 4344 dbSNP
rs557437812 4350 dbSNP
rs900213520 4357 dbSNP
rs1049110445 4358 dbSNP
rs878981774 4360 dbSNP
rs555963364 4361 dbSNP
rs567845594 4365 dbSNP
rs768530287 4367 dbSNP
rs545508724 4373 dbSNP
rs538569174 4376 dbSNP
rs1469485811 4379 dbSNP
rs1270888795 4387 dbSNP
rs1227455184 4399 dbSNP
rs896511162 4399 dbSNP
rs1340484119 4404 dbSNP
rs560791386 4418 dbSNP
rs1272340226 4421 dbSNP
rs1013842298 4427 dbSNP
rs1447791329 4428 dbSNP
rs1192814618 4430 dbSNP
rs1365145271 4432 dbSNP
rs1304199422 4438 dbSNP
rs1371566774 4449 dbSNP
rs1443219654 4462 dbSNP
rs1392453960 4466 dbSNP
rs201084233 4466 dbSNP
rs1478866535 4477 dbSNP
rs1045374452 4486 dbSNP
rs1396899698 4487 dbSNP
rs905323487 4487 dbSNP
rs1020129353 4500 dbSNP
rs907216303 4506 dbSNP
rs1002841882 4507 dbSNP
rs556815475 4508 dbSNP
rs1220349016 4509 dbSNP
rs1432833288 4510 dbSNP
rs868332865 4531 dbSNP
rs1034882783 4534 dbSNP
rs572533588 4536 dbSNP
rs958816184 4539 dbSNP
rs957364275 4543 dbSNP
rs182138266 4544 dbSNP
rs769783005 4545 dbSNP
rs774410835 4546 dbSNP
rs1368842614 4549 dbSNP
rs1274375303 4553 dbSNP
rs1009971919 4555 dbSNP
rs1304687903 4560 dbSNP
rs951499310 4591 dbSNP
rs1347750982 4599 dbSNP
rs185164447 4600 dbSNP
rs1174173660 4607 dbSNP
rs1262551177 4621 dbSNP
rs1486199715 4623 dbSNP
rs965724350 4624 dbSNP
rs1204631850 4630 dbSNP
rs975964194 4634 dbSNP
rs553980607 4645 dbSNP
rs1234273005 4648 dbSNP
rs1180028808 4649 dbSNP
rs766870489 4649 dbSNP
rs1482923738 4655 dbSNP
rs1258711994 4662 dbSNP
rs572175556 4673 dbSNP
rs1346379459 4676 dbSNP
rs1277942284 4694 dbSNP
rs1259859540 4696 dbSNP
rs540051270 4700 dbSNP
rs1224418853 4705 dbSNP
rs1353031199 4706 dbSNP
rs190047236 4708 dbSNP
rs1409505922 4709 dbSNP
rs1349628739 4712 dbSNP
rs1193998423 4719 dbSNP
rs985042878 4727 dbSNP
rs1326072939 4733 dbSNP
rs975764346 4735 dbSNP
rs921714463 4752 dbSNP
rs909075032 4753 dbSNP
rs767585879 4763 dbSNP
rs1364317025 4771 dbSNP
rs1156471876 4776 dbSNP
rs750099553 4793 dbSNP
rs940752640 4801 dbSNP
rs931730905 4809 dbSNP
rs1452381073 4810 dbSNP
rs1482528794 4813 dbSNP
rs555248458 4818 dbSNP
rs148300627 4820 dbSNP
rs949371892 4833 dbSNP
rs1282308764 4838 dbSNP
rs945860333 4853 dbSNP
rs1335770846 4854 dbSNP
rs1326988557 4860 dbSNP
rs1234923985 4862 dbSNP
rs1370794845 4871 dbSNP
rs1045299862 4874 dbSNP
rs1302193277 4880 dbSNP
rs755669963 4915 dbSNP
rs1346419863 4925 dbSNP
rs905458732 4930 dbSNP
rs1001014234 4936 dbSNP
rs1041618869 4939 dbSNP
rs113081346 4953 dbSNP
rs1003324531 4956 dbSNP
rs562791306 4959 dbSNP
rs757649258 4975 dbSNP
rs1187592734 4978 dbSNP
rs1476697866 4989 dbSNP
rs1246223714 4991 dbSNP
rs1208213476 4993 dbSNP
rs1469032484 4999 dbSNP
rs532797864 5001 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugacgUCGGAACUGGAGGGUc 5'
               || :|||:||||||| 
Target 5' -----AG-UUUGGCCUCCCAa 3'
1 - 15
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugacgUCGGAACUGGAGGGUc 5'
               || :|||:||||||| 
Target 5' -----AG-UUUGGCCUCCCAa 3'
1 - 15
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000341893.3 | 3UTR | AGUUUGGCCUCCCAAAGUGCUGGGAUUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000341893.3 | 3UTR | AGUUUGGCCUCCCAAAGUGCUGGGAUUACAGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

Error report submission