pre-miRNA Information
pre-miRNA hsa-mir-516b-1   
Genomic Coordinates chr19: 53736845 - 53736934
Synonyms MIRN516-4, MIRN516B-1, MIRN516B1, MIR516B1
Description Homo sapiens miR-516b-1 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases
pre-miRNA hsa-mir-516b-2   
Genomic Coordinates chr19: 53725442 - 53725526
Synonyms MIRN516-3, MIRN516B-2, MIRN516B2, MIR516B2
Description Homo sapiens miR-516b-2 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-516b-3p
Sequence 56| UGCUUCCUUUCAGAGGGU |73
Evidence Experimental
Experiments Array-cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1413434631 1 dbSNP
rs746170707 2 dbSNP
rs1312744198 2 dbSNP
rs752101959 3 dbSNP
rs770077784 4 dbSNP
rs1193425541 6 dbSNP
rs953142850 7 dbSNP
rs1020245150 7 dbSNP
rs775845942 11 dbSNP
rs1402471980 11 dbSNP
rs760158839 15 dbSNP
rs78861479 16 dbSNP
rs765933705 16 dbSNP
Putative Targets

Gene Information
Gene Symbol LAMTOR3   
Synonyms MAP2K1IP1, MAPBP, MAPKSP1, MP1, PRO0633, Ragulator3
Description late endosomal/lysosomal adaptor, MAPK and MTOR activator 3
Transcript NM_021970   
Expression
Putative miRNA Targets on LAMTOR3
3'UTR of LAMTOR3
(miRNA target sites are highlighted)
>LAMTOR3|NM_021970|3'UTR
   1 TCTGACAGTGGTTTCAGTGTGTACCTTATCTTCATTATAACAACACAATATCAATCCAGCAATCTTTAGACTACAATAAT
  81 ACTTTTATCCATGTGCTCAAGAAAGGGCCCCTTTTTCCAACTTATACTAAAGAGCTAGCATATAGATGTAATTTATAGAT
 161 AGATCAGTTGCTATATTTTCTGGTGTAGGGTCTTTCTTATTTAGTGAGATCTAGGGATACCACAGAAATGGTTCAGTCTA
 241 TCACAGCTCCCATGGAGTTAGTCTGGTCACCAGATATGGATGAGAGATTCTATTCAGTGGATCAGAATCAAACTGGTACA
 321 TTGATCCACTTGAGCCGTTAAGTGCTGCCAATTGTACAATATGCCCAGGCTTGCAGAATAAAGCCAACTTTTTATTGTGA
 401 ATAATAATAAGGACATATTTTTCTTCAGATTATGTTTTATTTCTTTGCATTGAGTGAGGAACATAAAATGGCTTGGTAAA
 481 AGTAATAAAATCAGTACAATCACTAACTTTCCTTTGTACATATTATTTTGCAGTATAGATGAATATTACTAATCAGTTTG
 561 ATTATTCTCAGAGGGTGCTGCTCTTTAATGAAAATGAAAATTATAGCTAATGTTTTTTCCTCAAACTCTGCTTTCTGTAA
 641 CCAATCAGTGTTTTAATGTTTGTGTGTTCTTCATAAAATTTAAATACAATTCGTTATTCTGTTTCCAATGTTAGTATGTA
 721 TGTAAACATGATAGTACAGCCATTTTTTTCATATGTGAGTAAAAATAAAATAGTATTTTTAAAAATATAGTTTGAGCACT
 801 GTATAGGTCCTTTTTTTGTTCAGACTTTTTCCAAAAATCTAAACATAATTAATATACTCTTTCAGCCACATGAATAAATA
 881 ATGAGTGTTTCTTGTAGGTATTGGTTTGGAGATTGTTTTACGGTAGTATGAACTGTTAACTGGAAAAGAAACCTGAGATT
 961 GCAGTCAGCCAAGATTGTGCCACTGCACCCCAGCCTGGGCAACAGAGACTCCGTCTCAAAAACAAAAAAGAAAAGAAACC
1041 AAGAAACCTCAGGCATGAACCTAATTTAATCTCCATGAAAGAGGTACTACAGTTCTAGAATATACCCTTTATGTTCAGGA
1121 ATGCAGTCTATCATTCAGAGTTAATTTCTTTCTAGGCTCTTTGACAATCAGTTTTTCCCTGGATCAGTTCAGTACATATG
1201 CATTGAGCACCTGTGTGCCAGTCAGCCGAGCTATCACATTGCACAATTCTAAGAAGCACCATTCATGTCTCATCATATTT
1281 CTATGCTCTGGGAGTTGCCTTTCACATAGAATATGTGTGATTGTTATCCCTAGAATTGTGCAGTGAGGCAATTGGCTAGG
1361 TGCTGTGCTGCTTTTTCTTTCTTTCTTTTTTTTTTTAAGAGACAGAGTCTTGCTGTGTTGCCCAGTCTGGAGTGCAGTGG
1441 TGGCATGATCTTGCCTCACTGTAACCTCTGCCTCCTGGGTTCAAGCTGTTCTCATGCCCCATTCTCCCTTGTAGCTGGGA
1521 TTACAGGCTTACACCATCGCACTTGGCAAATTTGTGTATTTTTAGTAGAGACAGGAATTCACCATGTTGGCCAGGCTGGT
1601 CTTGAACTCCTGACTTAAAGTGATCCACCTGCTTTGGCCTCCCAAAATGCTAGGATTATAGGTGTGAGCCACTGCACCGG
1681 GCCATGTGCTACTTTTTCTTCCTTCCATCCTTCCTCCCTTCTTCAGTGTAAATATGAGATTAATTTGTGATACCTTACTT
1761 TAAAGAACTTAGAGTTCAGTAAAGGAAGCAGGTATAGAAAGTGCTATGATAAAGCTATACATAGGATGGTATAGAACCAC
1841 AGACTAGGGGCACTTAAAATGGGCAAGAAAATAGCCTTTGTAAATAAAATAGAGGCAAGAGATATAATGCTTTACCTGCA
1921 AAGAGCTATAAATACAGCCATGTACCATATAATGATGTTTCAGTTAGTGAAGGACCACATACGAGGGTGGTCAGAACAGC
2001 AGGCTATACCATATAGCCTAGGTGTGTAGTAGGCTATACCATATAGCCTAGGTGTGTAGTAGTAGGCTATACCATATAGC
2081 CTAGGTGTGTAGTAGTAGGCGATACCATATAGCCTAGGTGTGTAGTAGTAGGCTATACCATATAGCCTAGGTGTATAGTA
2161 GTAGGCTATACCATATAGCCTAGGTGTGTAGTAGGCTATACCATATAGCCTAGGTATGTAGTAGTAGGCTATACCATATA
2241 GCCTAGGTGTGTAGTAGTAGGCTATACCATCTGGGGTTCCTGTCAGTACAGTATGATGTTCACATAATGATGAAATCACC
2321 TAACAAAGCATGTCTCGAAATGTATCCACATTGTTACGTAACACATGACTGTAGTTAATTGTTACAATTGAAATACTAGA
2401 TGTACTCATTGAAATCCAGAATTCCCATTATCTGGATTATTTAATATCGTTCAGGAAATTTTTGCCAGTGCAATGGTGCA
2481 TGAAACAATGTCTTTTAGAAATGAGGTGGCCAGATTTCTATTTGCAGATAATAATTGTATATCTAAAAATCCTAGAAAAA
2561 GAAATGATAACAAATGGAGCTACTTAACCTTTACATGTTGAATGCTGCCACTGTTAAAATTTCTGAGGGGGTATAATAGA
2641 TAAACTATCCCATAGTTCATCTGGAAAAATAAGGTGGTGAAAATTGCTAAGAAATTTTTGAAAGGGTAATGTAAACCTAG
2721 ATTAACTGTTTTTGAAAGGTAGTACAGAACTGAATGCACAACTAGATATCAATGGTATGTACTCACCCAGAAAAAAGACT
2801 TCAGTACATACATGTGAGGGCTTAAAACATTGTTATAAAGACGGGATCACAATGGGAAAAGGATTATTCAATAAGTAGGG
2881 CAGGCATTCTCTATGCCTGCTAGGGAAGTGTGACTTGTTATACTCTTTATGTACAGCAATTGGCAGTCTGTGAAACTTTT
2961 AAATTCATATACATAACCTTTTGCCCTGCAATTCCACTTCTAGAAATTTATCCTACCAAACAAAGCACATAGATGTGCAA
3041 AAGTATGTATTTACAAGTATATTCTTTGCAACTTGGTAATGTCAAAGAATTGGAAGCAACCTAAATATCTGCCATAGGTA
3121 GGATAACCATATGCTTTGGCTTTTTGAACACTACCAGTTTATACCTGCTGTTCTTGGATAATTATTAATAGTGCTTTCAT
3201 TCTCAATGTCTCACTTTAGATAATAAATTACAGAGGATTGGTGAAACTAATTTGCCCAATGGAAAAAGGAATGAAGAAGT
3281 GCTTTAGGTACTGAGATGAAAAGATCTCTAAGGCATAATAATGTTTATTGAGAAAAGCATGGTGTCAAACTGTATGGCAT
3361 GCTACAATTGATGTATAAGAAGAAAAAATGTGTATGTATTCCTATTTGTTTGTATATGGTAGACTGTCTCTGAAGACATA
3441 TATGGAAGAACCTGATCACATTGGTAGTCTCCAAGGAGCAGAACTAGATACCTGGGGGATAAGGATCCCAGGAGTGAGCC
3521 TTTTCATTGTAAACTTCATTGTACTTTGAGTTTTTAACTGTTCAAAAATAATAAAATTAGAAATAAAATATTTCAACAAA
3601 CAATAAAATGGGATATTTGGGGAAGAAAGTTGTCTCAGGGCTCTCCAAAGAAGCAG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uggGAGAC-UUUCCUUCGu 5'
             :|| | ||||||||| 
Target 5' gagTTCAGTAAAGGAAGCa 3'
1772 - 1790 155.00 -13.80
2
miRNA  3' uggGAGACUUUCCUUCGu 5'
             ||||  || ||||| 
Target 5' gggCTCTCCAAAGAAGCa 3'
3638 - 3655 127.00 -12.00
3
miRNA  3' ugGGAGACUUUCCUUCGu 5'
            ::|:||||||| ||: 
Target 5' tgTTTTTGAAAGGTAGTa 3'
2727 - 2744 120.00 -15.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30149147 4 COSMIC
COSN31511924 16 COSMIC
COSN9004907 17 COSMIC
COSN30511591 25 COSMIC
COSN30535422 30 COSMIC
COSN28389662 52 COSMIC
COSN15660865 60 COSMIC
COSN30149658 62 COSMIC
COSN30119627 65 COSMIC
COSN30133303 66 COSMIC
COSN30493909 85 COSMIC
COSN30527070 112 COSMIC
COSN31549035 122 COSMIC
COSN7769785 397 COSMIC
COSN7720725 693 COSMIC
COSN505852 1030 COSMIC
COSN6787296 1220 COSMIC
COSN16368224 1250 COSMIC
COSN23751131 1576 COSMIC
COSN9897345 1904 COSMIC
COSN21519249 1994 COSMIC
COSN32062517 2017 COSMIC
COSN17277568 2054 COSMIC
COSN17278005 2087 COSMIC
COSN29691411 2101 COSMIC
COSN32065829 2120 COSMIC
COSN24457559 2122 COSMIC
COSN20300145 2134 COSMIC
COSN32065828 2153 COSMIC
COSN32061818 2155 COSMIC
COSN32065827 2155 COSMIC
COSN7769784 2164 COSMIC
COSN24889592 2186 COSMIC
COSN7769783 2216 COSMIC
COSN16233893 2249 COSMIC
COSN14837260 2679 COSMIC
COSN27339295 2842 COSMIC
COSN7720724 2872 COSMIC
COSN22339260 2891 COSMIC
COSN28196262 3211 COSMIC
COSN9897344 3267 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs778476302 3 dbSNP
rs1200330340 5 dbSNP
rs377184402 9 dbSNP
rs1249662018 17 dbSNP
rs745958845 18 dbSNP
rs776856839 20 dbSNP
rs371667534 21 dbSNP
rs1209246199 23 dbSNP
rs747370548 25 dbSNP
rs764582961 26 dbSNP
rs934523058 28 dbSNP
rs35008249 29 dbSNP
rs1223676851 32 dbSNP
rs778168254 35 dbSNP
rs772545504 37 dbSNP
rs1392607548 43 dbSNP
rs748691947 45 dbSNP
rs779317864 47 dbSNP
rs1446295864 48 dbSNP
rs1408668017 50 dbSNP
rs1380684679 53 dbSNP
rs1330483945 62 dbSNP
rs191940376 65 dbSNP
rs1336101323 66 dbSNP
rs1281471518 77 dbSNP
rs928432376 79 dbSNP
rs1229318391 82 dbSNP
rs1431785959 82 dbSNP
rs769136255 86 dbSNP
rs917999116 96 dbSNP
rs988209695 99 dbSNP
rs956768853 100 dbSNP
rs1347216252 110 dbSNP
rs1316459815 111 dbSNP
rs1045486623 120 dbSNP
rs551313105 125 dbSNP
rs1451545809 139 dbSNP
rs1164136905 140 dbSNP
rs142936049 142 dbSNP
rs1253427847 145 dbSNP
rs1382876755 146 dbSNP
rs1472614700 159 dbSNP
rs984452668 167 dbSNP
rs544393327 173 dbSNP
rs576991769 183 dbSNP
rs964319828 185 dbSNP
rs1459086311 188 dbSNP
rs1018501218 199 dbSNP
rs1485892051 199 dbSNP
rs952964129 207 dbSNP
rs920163031 215 dbSNP
rs1403593721 216 dbSNP
rs1243538595 228 dbSNP
rs1213195528 231 dbSNP
rs1352452495 232 dbSNP
rs1410496629 242 dbSNP
rs775223542 246 dbSNP
rs1446856628 249 dbSNP
rs34321222 252 dbSNP
rs973368358 254 dbSNP
rs558801768 255 dbSNP
rs1266459808 256 dbSNP
rs890756760 262 dbSNP
rs1020164081 266 dbSNP
rs1220953076 271 dbSNP
rs1025820855 277 dbSNP
rs1483639736 282 dbSNP
rs1248824006 292 dbSNP
rs1357863211 299 dbSNP
rs1247723815 311 dbSNP
rs1425200787 316 dbSNP
rs1187802005 320 dbSNP
rs1367746811 329 dbSNP
rs993910452 332 dbSNP
rs1170467256 343 dbSNP
rs1314923716 351 dbSNP
rs1428987231 356 dbSNP
rs1307510266 359 dbSNP
rs898247528 365 dbSNP
rs1038190825 369 dbSNP
rs1215288362 373 dbSNP
rs372259338 374 dbSNP
rs533851109 378 dbSNP
rs1244263957 379 dbSNP
rs1300221348 386 dbSNP
rs1343507440 387 dbSNP
rs954123773 390 dbSNP
rs572081915 399 dbSNP
rs1249174651 403 dbSNP
rs532777974 404 dbSNP
rs148972953 405 dbSNP
rs745339395 406 dbSNP
rs1459665648 407 dbSNP
rs1190313272 408 dbSNP
rs763028999 414 dbSNP
rs1390491371 424 dbSNP
rs1045613343 431 dbSNP
rs1359677653 438 dbSNP
rs1448846031 439 dbSNP
rs1303478880 452 dbSNP
rs1426506026 464 dbSNP
rs1011517865 468 dbSNP
rs1303450843 475 dbSNP
rs1467627332 475 dbSNP
rs1405667347 481 dbSNP
rs1450637423 483 dbSNP
rs1363684463 484 dbSNP
rs893107362 497 dbSNP
rs1366362217 500 dbSNP
rs1228399801 507 dbSNP
rs949424230 510 dbSNP
rs1233371995 519 dbSNP
rs1421021800 520 dbSNP
rs1459707870 528 dbSNP
rs1210193612 529 dbSNP
rs1248481671 530 dbSNP
rs917959203 539 dbSNP
rs1326392132 543 dbSNP
rs1184757276 545 dbSNP
rs1184415868 548 dbSNP
rs1433660772 551 dbSNP
rs988544986 552 dbSNP
rs15788 554 dbSNP
rs1390349597 564 dbSNP
rs1428614594 568 dbSNP
rs1477260292 569 dbSNP
rs1270083048 575 dbSNP
rs1389894063 587 dbSNP
rs1430438421 592 dbSNP
rs78743812 595 dbSNP
rs1370406627 604 dbSNP
rs1489954628 609 dbSNP
rs907041981 614 dbSNP
rs925348858 624 dbSNP
rs543947837 630 dbSNP
rs979611053 631 dbSNP
rs568534160 633 dbSNP
rs1018943093 642 dbSNP
rs1309338619 648 dbSNP
rs987035895 649 dbSNP
rs955803233 653 dbSNP
rs550050648 656 dbSNP
rs894211726 664 dbSNP
rs1268354837 666 dbSNP
rs1048788941 675 dbSNP
rs930309079 677 dbSNP
rs1413008104 683 dbSNP
rs775376705 692 dbSNP
rs973012714 693 dbSNP
rs756838344 700 dbSNP
rs898278722 708 dbSNP
rs1303037982 714 dbSNP
rs1343148372 717 dbSNP
rs1016608592 720 dbSNP
rs1343398142 728 dbSNP
rs1372161524 733 dbSNP
rs1001327338 734 dbSNP
rs1221659303 738 dbSNP
rs1291833959 742 dbSNP
rs905663742 743 dbSNP
rs538409176 751 dbSNP
rs570988964 752 dbSNP
rs1289479583 753 dbSNP
rs1207424520 755 dbSNP
rs1483968787 755 dbSNP
rs1355790641 757 dbSNP
rs1469833544 762 dbSNP
rs1167645582 765 dbSNP
rs1416457655 770 dbSNP
rs954154830 773 dbSNP
rs1028375624 774 dbSNP
rs1163281551 774 dbSNP
rs1201115864 788 dbSNP
rs749222178 797 dbSNP
rs776458766 801 dbSNP
rs1439656159 813 dbSNP
rs891691184 816 dbSNP
rs1267026595 818 dbSNP
rs1285560802 818 dbSNP
rs1052466716 819 dbSNP
rs1178294252 821 dbSNP
rs769907031 821 dbSNP
rs552866835 822 dbSNP
rs1249721851 826 dbSNP
rs1198131933 832 dbSNP
rs1417679386 834 dbSNP
rs1324349310 838 dbSNP
rs760598022 839 dbSNP
rs1265297579 843 dbSNP
rs528012345 845 dbSNP
rs777748351 848 dbSNP
rs1273879480 854 dbSNP
rs1043790663 871 dbSNP
rs185358039 872 dbSNP
rs1300270995 874 dbSNP
rs1239451752 880 dbSNP
rs1391921188 886 dbSNP
rs1483677052 889 dbSNP
rs1375395618 890 dbSNP
rs1296357103 898 dbSNP
rs1383707405 903 dbSNP
rs1451939300 908 dbSNP
rs1169778698 911 dbSNP
rs1418219599 914 dbSNP
rs1407692541 920 dbSNP
rs111928556 921 dbSNP
rs911425973 922 dbSNP
rs987369180 923 dbSNP
rs1334465396 926 dbSNP
rs1367082651 929 dbSNP
rs1406161707 939 dbSNP
rs1435768802 940 dbSNP
rs752498401 943 dbSNP
rs766583877 949 dbSNP
rs1178143855 951 dbSNP
rs998816087 952 dbSNP
rs907110281 955 dbSNP
rs1212912226 956 dbSNP
rs1024165519 957 dbSNP
rs529695611 959 dbSNP
rs955672064 972 dbSNP
rs1203254969 973 dbSNP
rs758572181 976 dbSNP
rs918820709 980 dbSNP
rs1241755604 983 dbSNP
rs972384709 984 dbSNP
rs145870848 997 dbSNP
rs1189833967 1006 dbSNP
rs1242070946 1007 dbSNP
rs189565838 1013 dbSNP
rs1249098564 1021 dbSNP
rs561991751 1025 dbSNP
rs1178557296 1026 dbSNP
rs1461885019 1030 dbSNP
rs149839395 1031 dbSNP
rs1469025508 1037 dbSNP
rs1173812876 1039 dbSNP
rs1001274973 1040 dbSNP
rs765201708 1041 dbSNP
rs139065218 1062 dbSNP
rs1202027795 1068 dbSNP
rs1014493416 1080 dbSNP
rs762017575 1081 dbSNP
rs147350308 1082 dbSNP
rs1318487277 1088 dbSNP
rs999531080 1089 dbSNP
rs903820836 1091 dbSNP
rs1346223964 1095 dbSNP
rs1043736347 1098 dbSNP
rs540091422 1099 dbSNP
rs1206125093 1100 dbSNP
rs911276837 1103 dbSNP
rs1283921789 1106 dbSNP
rs1051299960 1107 dbSNP
rs1239247839 1109 dbSNP
rs1382899164 1111 dbSNP
rs934124504 1112 dbSNP
rs1338069522 1113 dbSNP
rs918862482 1117 dbSNP
rs368316385 1124 dbSNP
rs116627259 1126 dbSNP
rs1289063123 1130 dbSNP
rs957442656 1139 dbSNP
rs962925903 1148 dbSNP
rs909591465 1151 dbSNP
rs1407078175 1159 dbSNP
rs1324090971 1172 dbSNP
rs979720455 1181 dbSNP
rs971367657 1182 dbSNP
rs969864241 1186 dbSNP
rs1239965078 1193 dbSNP
rs1348940251 1196 dbSNP
rs554486482 1198 dbSNP
rs535451793 1199 dbSNP
rs574765186 1203 dbSNP
rs1293161627 1204 dbSNP
rs1012816230 1207 dbSNP
rs1219662659 1219 dbSNP
rs1253288130 1220 dbSNP
rs1419356566 1228 dbSNP
rs894318029 1236 dbSNP
rs1027455638 1240 dbSNP
rs1473648577 1242 dbSNP
rs1024447429 1244 dbSNP
rs1387188957 1250 dbSNP
rs992696515 1253 dbSNP
rs994624686 1255 dbSNP
rs1181792946 1256 dbSNP
rs1364890572 1261 dbSNP
rs897568666 1271 dbSNP
rs561829267 1272 dbSNP
rs1031599040 1274 dbSNP
rs764710102 1283 dbSNP
rs904436920 1302 dbSNP
rs879095256 1306 dbSNP
rs556603194 1307 dbSNP
rs1316125386 1309 dbSNP
rs1360015713 1311 dbSNP
rs1022327007 1321 dbSNP
rs1244397648 1322 dbSNP
rs1276207524 1325 dbSNP
rs537966966 1326 dbSNP
rs1480671953 1330 dbSNP
rs1194931861 1338 dbSNP
rs1317034607 1351 dbSNP
rs1242041016 1358 dbSNP
rs1443718057 1365 dbSNP
rs761053755 1365 dbSNP
rs1184004824 1373 dbSNP
rs1339353565 1375 dbSNP
rs932869692 1380 dbSNP
rs921465192 1385 dbSNP
rs1054549209 1386 dbSNP
rs1295933669 1388 dbSNP
rs551890593 1389 dbSNP
rs889889603 1389 dbSNP
rs1397958656 1397 dbSNP
rs924677287 1397 dbSNP
rs977503954 1397 dbSNP
rs1051591917 1405 dbSNP
rs1337862066 1407 dbSNP
rs1383279455 1412 dbSNP
rs570995524 1415 dbSNP
rs971822950 1417 dbSNP
rs1451185045 1421 dbSNP
rs934177727 1427 dbSNP
rs552805514 1436 dbSNP
rs534453746 1451 dbSNP
rs572050345 1451 dbSNP
rs776024927 1453 dbSNP
rs1249069725 1455 dbSNP
rs917218240 1465 dbSNP
rs1162203136 1467 dbSNP
rs991413349 1474 dbSNP
rs1472546244 1475 dbSNP
rs1190493175 1481 dbSNP
rs958604467 1484 dbSNP
rs1427812542 1489 dbSNP
rs1169860408 1491 dbSNP
rs897363258 1495 dbSNP
rs1471102758 1499 dbSNP
rs1177415461 1500 dbSNP
rs1405884165 1503 dbSNP
rs1468580409 1507 dbSNP
rs1290932012 1509 dbSNP
rs1037159034 1514 dbSNP
rs771703369 1528 dbSNP
rs1292882213 1530 dbSNP
rs1332285113 1532 dbSNP
rs759086827 1538 dbSNP
rs910124144 1539 dbSNP
rs1320897239 1540 dbSNP
rs1210395649 1542 dbSNP
rs1260803053 1545 dbSNP
rs1215679231 1552 dbSNP
rs1490445577 1554 dbSNP
rs567161342 1559 dbSNP
rs1008605244 1572 dbSNP
rs1207986231 1579 dbSNP
rs879838141 1582 dbSNP
rs1491301472 1583 dbSNP
rs77625232 1584 dbSNP
rs74405853 1587 dbSNP
rs74691179 1588 dbSNP
rs1229185045 1589 dbSNP
rs79435096 1589 dbSNP
rs200893711 1590 dbSNP
rs750374310 1590 dbSNP
rs755245442 1590 dbSNP
rs948367487 1593 dbSNP
rs890124992 1612 dbSNP
rs1161762125 1618 dbSNP
rs114919054 1622 dbSNP
rs1453723613 1624 dbSNP
rs992955644 1625 dbSNP
rs537139972 1628 dbSNP
rs1287624011 1632 dbSNP
rs1277151785 1634 dbSNP
rs117894208 1639 dbSNP
rs778711635 1648 dbSNP
rs748814228 1649 dbSNP
rs1343283445 1650 dbSNP
rs1229832069 1657 dbSNP
rs1316115798 1672 dbSNP
rs1322147345 1678 dbSNP
rs978571839 1679 dbSNP
rs1397326341 1682 dbSNP
rs1223363741 1694 dbSNP
rs79155879 1698 dbSNP
rs777625485 1705 dbSNP
rs115881054 1706 dbSNP
rs114227967 1707 dbSNP
rs889745574 1711 dbSNP
rs573126532 1713 dbSNP
rs558092752 1720 dbSNP
rs75303173 1721 dbSNP
rs1157299268 1744 dbSNP
rs1480679911 1747 dbSNP
rs1425797522 1749 dbSNP
rs1270696897 1752 dbSNP
rs748955003 1753 dbSNP
rs1450914457 1755 dbSNP
rs897229357 1756 dbSNP
rs1444015703 1758 dbSNP
rs1298381518 1772 dbSNP
rs532112940 1784 dbSNP
rs1367819617 1788 dbSNP
rs28678904 1791 dbSNP
rs1197082295 1792 dbSNP
rs1316843889 1803 dbSNP
rs991486524 1803 dbSNP
rs1257100161 1806 dbSNP
rs780829442 1810 dbSNP
rs540031649 1815 dbSNP
rs1360098321 1817 dbSNP
rs1245125916 1818 dbSNP
rs1223671925 1822 dbSNP
rs144334125 1824 dbSNP
rs1045006067 1832 dbSNP
rs1233676104 1833 dbSNP
rs1436427695 1847 dbSNP
rs1336911474 1850 dbSNP
rs1331434015 1851 dbSNP
rs973317472 1862 dbSNP
rs11723286 1878 dbSNP
rs916934091 1883 dbSNP
rs1382917256 1901 dbSNP
rs1009095266 1904 dbSNP
rs750604331 1905 dbSNP
rs1353594231 1908 dbSNP
rs779251670 1910 dbSNP
rs1439507176 1918 dbSNP
rs1338515384 1921 dbSNP
rs542587367 1932 dbSNP
rs954481397 1934 dbSNP
rs1471046408 1940 dbSNP
rs1383214689 1941 dbSNP
rs1451907394 1950 dbSNP
rs140424357 1953 dbSNP
rs978604464 1961 dbSNP
rs753972176 1982 dbSNP
rs1477558597 1983 dbSNP
rs893444255 1990 dbSNP
rs1233440464 1991 dbSNP
rs1202662550 1994 dbSNP
rs1183890384 1999 dbSNP
rs968515612 1999 dbSNP
rs1456120103 2000 dbSNP
rs1236968683 2001 dbSNP
rs556303149 2001 dbSNP
rs1203926695 2002 dbSNP
rs1265463896 2002 dbSNP
rs910473161 2007 dbSNP
rs1183310709 2010 dbSNP
rs1241841361 2011 dbSNP
rs1462343629 2011 dbSNP
rs764652646 2014 dbSNP
rs374834924 2021 dbSNP
rs1219057661 2025 dbSNP
rs986418266 2025 dbSNP
rs1351834415 2032 dbSNP
rs1418136990 2032 dbSNP
rs569567687 2033 dbSNP
rs1000414722 2036 dbSNP
rs1406618649 2041 dbSNP
rs577956161 2042 dbSNP
rs1376271378 2050 dbSNP
rs867420258 2054 dbSNP
rs1361356712 2059 dbSNP
rs767558402 2063 dbSNP
rs113301023 2066 dbSNP
rs1265248386 2066 dbSNP
rs1030100753 2068 dbSNP
rs1203466896 2070 dbSNP
rs998186025 2074 dbSNP
rs1357688288 2080 dbSNP
rs1449280659 2083 dbSNP
rs201994413 2087 dbSNP
rs961455280 2089 dbSNP
rs1015609820 2099 dbSNP
rs1474132399 2099 dbSNP
rs1413759700 2100 dbSNP
rs10018046 2101 dbSNP
rs1237810923 2101 dbSNP
rs1005679171 2107 dbSNP
rs185238112 2118 dbSNP
rs200522457 2120 dbSNP
rs1013623772 2122 dbSNP
rs896049372 2128 dbSNP
rs1343307215 2132 dbSNP
rs1327326557 2134 dbSNP
rs9995504 2134 dbSNP
rs1183709594 2135 dbSNP
rs1445896125 2140 dbSNP
rs1235437423 2153 dbSNP
rs10029745 2155 dbSNP
rs1447942470 2158 dbSNP
rs1286713809 2162 dbSNP
rs895886672 2164 dbSNP
rs368586381 2165 dbSNP
rs1487554641 2177 dbSNP
rs1056850574 2179 dbSNP
rs1353569416 2186 dbSNP
rs938448719 2186 dbSNP
rs1321760839 2188 dbSNP
rs59002393 2188 dbSNP
rs1196305669 2189 dbSNP
rs1365381942 2190 dbSNP
rs770891600 2195 dbSNP
rs1157715503 2202 dbSNP
rs1405744676 2203 dbSNP
rs1402810957 2211 dbSNP
rs867833433 2216 dbSNP
rs1316311814 2218 dbSNP
rs34599022 2218 dbSNP
rs56919484 2221 dbSNP
rs1305088071 2224 dbSNP
rs1366237159 2228 dbSNP
rs534388552 2233 dbSNP
rs1404638280 2235 dbSNP
rs1321812637 2240 dbSNP
rs1158268168 2249 dbSNP
rs59218638 2249 dbSNP
rs1240210492 2251 dbSNP
rs1279292270 2254 dbSNP
rs1377051771 2264 dbSNP
rs567105216 2266 dbSNP
rs1248772583 2270 dbSNP
rs1283896597 2271 dbSNP
rs200536987 2271 dbSNP
rs199514776 2273 dbSNP
rs1431676073 2274 dbSNP
rs1358093138 2276 dbSNP
rs1055835064 2280 dbSNP
rs937340621 2284 dbSNP
rs1252242068 2285 dbSNP
rs1438008100 2288 dbSNP
rs1345585429 2304 dbSNP
rs1299762144 2312 dbSNP
rs920552798 2319 dbSNP
rs1417595823 2322 dbSNP
rs1446414016 2324 dbSNP
rs760006188 2330 dbSNP
rs773819818 2336 dbSNP
rs973733854 2337 dbSNP
rs1386000245 2342 dbSNP
rs1424112746 2344 dbSNP
rs116076523 2346 dbSNP
rs557763013 2350 dbSNP
rs1392125842 2351 dbSNP
rs987302704 2356 dbSNP
rs770624479 2357 dbSNP
rs985964140 2358 dbSNP
rs954818269 2360 dbSNP
rs1180939039 2367 dbSNP
rs1316374836 2370 dbSNP
rs1382609119 2379 dbSNP
rs1242022741 2381 dbSNP
rs536566561 2385 dbSNP
rs974440546 2386 dbSNP
rs1265837106 2387 dbSNP
rs1255991129 2402 dbSNP
rs762414034 2409 dbSNP
rs1462475587 2434 dbSNP
rs1192006074 2440 dbSNP
rs1242458927 2446 dbSNP
rs976740919 2448 dbSNP
rs957704042 2449 dbSNP
rs1293219849 2451 dbSNP
rs961322518 2461 dbSNP
rs772731576 2465 dbSNP
rs1170226075 2466 dbSNP
rs1289173796 2467 dbSNP
rs903434075 2470 dbSNP
rs1005628364 2473 dbSNP
rs952793819 2480 dbSNP
rs1337761691 2481 dbSNP
rs1364396886 2488 dbSNP
rs567439201 2495 dbSNP
rs1394778541 2496 dbSNP
rs1297154306 2508 dbSNP
rs1226310968 2510 dbSNP
rs1275926419 2511 dbSNP
rs1325162187 2539 dbSNP
rs568789528 2549 dbSNP
rs1339588055 2562 dbSNP
rs1303693238 2564 dbSNP
rs1262219476 2567 dbSNP
rs895960503 2568 dbSNP
rs1347636411 2573 dbSNP
rs1206786863 2578 dbSNP
rs1055909301 2581 dbSNP
rs937373119 2590 dbSNP
rs1013071737 2602 dbSNP
rs1410011852 2606 dbSNP
rs1425390787 2611 dbSNP
rs550318136 2623 dbSNP
rs1168081772 2625 dbSNP
rs899196143 2631 dbSNP
rs1358919038 2634 dbSNP
rs182394282 2639 dbSNP
rs1057360010 2642 dbSNP
rs940625604 2644 dbSNP
rs1386238541 2649 dbSNP
rs998523633 2656 dbSNP
rs1398852053 2666 dbSNP
rs907771307 2687 dbSNP
rs1193443108 2688 dbSNP
rs750938960 2704 dbSNP
rs1223717393 2717 dbSNP
rs987763849 2723 dbSNP
rs200576590 2747 dbSNP
rs902817217 2750 dbSNP
rs921730161 2772 dbSNP
rs1205367428 2774 dbSNP
rs190490044 2775 dbSNP
rs748047892 2777 dbSNP
rs957776535 2786 dbSNP
rs1261096506 2792 dbSNP
rs1042736522 2793 dbSNP
rs757645631 2797 dbSNP
rs546314677 2802 dbSNP
rs977767907 2805 dbSNP
rs1317081747 2812 dbSNP
rs968065284 2818 dbSNP
rs947144223 2835 dbSNP
rs1283631547 2836 dbSNP
rs1364911091 2836 dbSNP
rs550369745 2842 dbSNP
rs910289898 2843 dbSNP
rs1365455878 2848 dbSNP
rs960201391 2852 dbSNP
rs1366857519 2870 dbSNP
rs1405248486 2871 dbSNP
rs1292849764 2877 dbSNP
rs1050699944 2881 dbSNP
rs1392955878 2883 dbSNP
rs147157293 2884 dbSNP
rs1168105576 2886 dbSNP
rs768320434 2893 dbSNP
rs751858376 2899 dbSNP
rs1361666310 2902 dbSNP
rs1223241196 2910 dbSNP
rs940606504 2913 dbSNP
rs1038135313 2914 dbSNP
rs1004897268 2921 dbSNP
rs1178736880 2929 dbSNP
rs542877166 2931 dbSNP
rs1179343532 2934 dbSNP
rs908590796 2939 dbSNP
rs984065962 2942 dbSNP
rs186894333 2951 dbSNP
rs562858895 2954 dbSNP
rs1023019837 2956 dbSNP
rs148442432 2959 dbSNP
rs1463183306 2960 dbSNP
rs1298576144 2973 dbSNP
rs960195355 2977 dbSNP
rs371482757 2979 dbSNP
rs566786623 2983 dbSNP
rs181511582 2991 dbSNP
rs551781289 3001 dbSNP
rs925045115 3008 dbSNP
rs531775156 3010 dbSNP
rs1320193905 3015 dbSNP
rs533706095 3025 dbSNP
rs1252320998 3030 dbSNP
rs1457585985 3040 dbSNP
rs559079380 3041 dbSNP
rs540746688 3045 dbSNP
rs1445718021 3047 dbSNP
rs1180829058 3063 dbSNP
rs1411372890 3064 dbSNP
rs76500033 3067 dbSNP
rs1399025960 3068 dbSNP
rs757584527 3069 dbSNP
rs1300589814 3083 dbSNP
rs753916527 3087 dbSNP
rs747919667 3090 dbSNP
rs1034539009 3091 dbSNP
rs1001689216 3097 dbSNP
rs963850050 3099 dbSNP
rs1377055902 3108 dbSNP
rs1016367116 3110 dbSNP
rs1011218626 3113 dbSNP
rs777974541 3118 dbSNP
rs756299476 3119 dbSNP
rs1265365552 3120 dbSNP
rs1462189159 3121 dbSNP
rs933159626 3127 dbSNP
rs901713181 3129 dbSNP
rs1036154024 3131 dbSNP
rs189148238 3133 dbSNP
rs1178384927 3152 dbSNP
rs909118906 3153 dbSNP
rs536912690 3155 dbSNP
rs931305639 3163 dbSNP
rs915982328 3173 dbSNP
rs11944405 3190 dbSNP
rs1332095663 3198 dbSNP
rs1378580050 3204 dbSNP
rs960392073 3205 dbSNP
rs117539192 3206 dbSNP
rs925086504 3212 dbSNP
rs1042144579 3217 dbSNP
rs1217000430 3228 dbSNP
rs1285660153 3234 dbSNP
rs879046455 3255 dbSNP
rs751989743 3256 dbSNP
rs1346135123 3265 dbSNP
rs1218950208 3268 dbSNP
rs1277125850 3268 dbSNP
rs1449196783 3269 dbSNP
rs1216731936 3273 dbSNP
rs11546700 3288 dbSNP
rs917628651 3295 dbSNP
rs762572603 3300 dbSNP
rs1198944316 3308 dbSNP
rs1477580455 3313 dbSNP
rs1482157791 3316 dbSNP
rs1011662688 3318 dbSNP
rs991803116 3328 dbSNP
rs570941477 3332 dbSNP
rs1217282355 3333 dbSNP
rs1159375333 3336 dbSNP
rs1355812070 3339 dbSNP
rs1398448625 3342 dbSNP
rs1305202905 3346 dbSNP
rs1331831055 3350 dbSNP
rs1436246503 3352 dbSNP
rs1273390786 3353 dbSNP
rs1306955636 3355 dbSNP
rs1353532171 3359 dbSNP
rs1238864478 3362 dbSNP
rs888755351 3363 dbSNP
rs1029070183 3365 dbSNP
rs997316444 3367 dbSNP
rs1350840507 3370 dbSNP
rs754927098 3382 dbSNP
rs927542209 3383 dbSNP
rs1450642203 3389 dbSNP
rs1196545162 3392 dbSNP
rs1234366883 3394 dbSNP
rs901585012 3395 dbSNP
rs528968139 3396 dbSNP
rs963580781 3397 dbSNP
rs1393873756 3398 dbSNP
rs1417944479 3400 dbSNP
rs1165505708 3401 dbSNP
rs1016810857 3402 dbSNP
rs1404961360 3406 dbSNP
rs940496890 3409 dbSNP
rs887711810 3412 dbSNP
rs1048925780 3414 dbSNP
rs931312714 3423 dbSNP
rs1309187714 3425 dbSNP
rs373218449 3440 dbSNP
rs1056196590 3441 dbSNP
rs1265495673 3442 dbSNP
rs1359240404 3444 dbSNP
rs1207695349 3458 dbSNP
rs938803768 3461 dbSNP
rs1458060771 3472 dbSNP
rs1158561363 3475 dbSNP
rs928675677 3478 dbSNP
rs977605346 3479 dbSNP
rs967501615 3491 dbSNP
rs1185710192 3496 dbSNP
rs1472628431 3499 dbSNP
rs900483822 3514 dbSNP
rs1398835354 3515 dbSNP
rs183981336 3518 dbSNP
rs1001153606 3519 dbSNP
rs1398765807 3522 dbSNP
rs914835867 3524 dbSNP
rs191815535 3525 dbSNP
rs953757545 3528 dbSNP
rs1028683829 3538 dbSNP
rs369403911 3546 dbSNP
rs1318124670 3548 dbSNP
rs1356450823 3550 dbSNP
rs945167541 3569 dbSNP
rs1462625976 3580 dbSNP
rs997575737 3583 dbSNP
rs1056196012 3597 dbSNP
rs937677619 3598 dbSNP
rs1278415258 3607 dbSNP
rs1185426977 3609 dbSNP
rs926236341 3620 dbSNP
rs530773083 3628 dbSNP
rs942267480 3630 dbSNP
rs1014602235 3641 dbSNP
rs1468082743 3647 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084066. RNA binding protein: AGO2. Condition:CLIP_noemetine_SantaCruzAb HITS-CLIP data was present in GSM1084067. RNA binding protein: AGO2. Condition:CLIP_emetine_SantaCruzAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugggagacuuuCCUUCGu 5'
                     |||||| 
Target 5' --caaagaauuGGAAGC- 3'
1 - 15
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084066
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SantaCruzAb
Location of target site ENST00000499666.2 | 3UTR | CAAAGAAUUGGAAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084067
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SantaCruzAb
Location of target site ENST00000499666.2 | 3UTR | CAAAGAAUUGGAAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE21849 B cell lymphoma -0.413 1.3e-2 -0.403 1.5e-2 29 Click to see details
GSE32688 Pancreatic cancer -0.194 1.4e-1 -0.153 2.0e-1 32 Click to see details
GSE27834 Pluripotent stem cells -0.258 1.7e-1 -0.238 1.9e-1 16 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.094 3.3e-1 -0.253 1.1e-1 25 Click to see details
GSE17306 Multiple myeloma -0.052 3.6e-1 0.324 1.2e-2 49 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
85 hsa-miR-516b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT077049 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT155261 IFNAR2 interferon alpha and beta receptor subunit 2 2 4
MIRT446119 ASTN1 astrotactin 1 2 2
MIRT447355 STOM stomatin 2 2
MIRT469329 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT470201 PSAT1 phosphoserine aminotransferase 1 2 6
MIRT475944 GXYLT1 glucoside xylosyltransferase 1 2 4
MIRT498268 KIAA1644 KIAA1644 2 2
MIRT501725 OVOL1 ovo like transcriptional repressor 1 2 2
MIRT522860 KIAA1551 KIAA1551 2 2
MIRT527900 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT528557 DNAAF3 dynein axonemal assembly factor 3 2 2
MIRT531250 PDF peptide deformylase, mitochondrial 2 2
MIRT534410 SENP1 SUMO1/sentrin specific peptidase 1 2 2
MIRT544656 MED19 mediator complex subunit 19 2 2
MIRT550681 YARS tyrosyl-tRNA synthetase 2 2
MIRT557208 HNRNPF heterogeneous nuclear ribonucleoprotein F 2 4
MIRT611532 DDB1 damage specific DNA binding protein 1 2 2
MIRT612087 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT616535 PARD6B par-6 family cell polarity regulator beta 2 4
MIRT616738 DCTN5 dynactin subunit 5 2 2
MIRT616754 SVOP SV2 related protein 2 4
MIRT617380 FAM227A family with sequence similarity 227 member A 2 2
MIRT617624 RAB3IP RAB3A interacting protein 2 2
MIRT620778 MT1A metallothionein 1A 2 2
MIRT623172 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT626034 AREL1 apoptosis resistant E3 ubiquitin protein ligase 1 2 2
MIRT627376 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT630533 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT631686 NQO2 N-ribosyldihydronicotinamide:quinone reductase 2 2 2
MIRT633896 FGF10 fibroblast growth factor 10 2 2
MIRT635933 PLA2G12A phospholipase A2 group XIIA 2 2
MIRT636275 RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase 2 2
MIRT636285 RAD51L3-RFFL RAD51L3-RFFL readthrough 2 2
MIRT636502 GDAP1L1 ganglioside induced differentiation associated protein 1 like 1 2 2
MIRT638037 SHPK sedoheptulokinase 2 2
MIRT639162 LAMTOR3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 2 2
MIRT639571 GORASP1 golgi reassembly stacking protein 1 2 2
MIRT641248 CENPN centromere protein N 2 2
MIRT643650 MYOCD myocardin 2 2
MIRT645490 TRIM63 tripartite motif containing 63 2 2
MIRT648016 SLCO4C1 solute carrier organic anion transporter family member 4C1 2 2
MIRT648102 LRRFIP1 LRR binding FLII interacting protein 1 2 2
MIRT648729 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT650177 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT652787 TCEANC2 transcription elongation factor A N-terminal and central domain containing 2 2 2
MIRT653248 SORD sorbitol dehydrogenase 2 2
MIRT654859 PPM1F protein phosphatase, Mg2+/Mn2+ dependent 1F 2 2
MIRT655533 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT656390 MCU mitochondrial calcium uniporter 2 2
MIRT656881 KIF1C kinesin family member 1C 2 2
MIRT657083 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT657629 GPX8 glutathione peroxidase 8 (putative) 2 2
MIRT658295 FAM83F family with sequence similarity 83 member F 2 2
MIRT659432 COL1A1 collagen type I alpha 1 chain 2 2
MIRT659791 CBLB Cbl proto-oncogene B 2 2
MIRT660153 BRCC3 BRCA1/BRCA2-containing complex subunit 3 2 2
MIRT660490 ARRDC3 arrestin domain containing 3 2 2
MIRT660503 ARPC2 actin related protein 2/3 complex subunit 2 2 2
MIRT666356 SIKE1 suppressor of IKBKE 1 2 2
MIRT677774 FKTN fukutin 2 2
MIRT688556 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT697415 ZFP91 ZFP91 zinc finger protein 2 2
MIRT709468 KRTAP19-1 keratin associated protein 19-1 2 2
MIRT711154 WDR82P1 WD repeat domain 82 pseudogene 1 2 2
MIRT711467 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT712515 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 2
MIRT712661 PCTP phosphatidylcholine transfer protein 2 2
MIRT713304 TYRP1 tyrosinase related protein 1 2 2
MIRT714597 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT716603 MPPED1 metallophosphoesterase domain containing 1 2 2
MIRT717537 PYGO2 pygopus family PHD finger 2 2 2
MIRT718058 CYP3A5 cytochrome P450 family 3 subfamily A member 5 2 2
MIRT718539 PIGQ phosphatidylinositol glycan anchor biosynthesis class Q 2 2
MIRT719768 ZNF236 zinc finger protein 236 2 2
MIRT720162 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT720360 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT721182 HOPX HOP homeobox 2 2
MIRT721278 RAD54L2 RAD54 like 2 2 2
MIRT721357 ENTHD1 ENTH domain containing 1 2 2
MIRT721504 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT721918 LINGO2 leucine rich repeat and Ig domain containing 2 2 2
MIRT722278 LURAP1 leucine rich adaptor protein 1 2 2
MIRT722789 FUT4 fucosyltransferase 4 2 2
MIRT724390 ABAT 4-aminobutyrate aminotransferase 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-516b Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-516b Bromocriptine approved 31101 Microarray Prolactinoma 22366961 2012 up-regulated
miR-516b Bromocriptine approved 31101 Quantitative real-time PCR Prolactinoma 22366961 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-516b-3p Paclitaxel 36314 NSC125973 approved sensitive High Pan-Cancer cell line (NCI-H460, NCI-H522, NCI-H322M, HOP62, A549, EKVX, MALME-3M, NCI-H226, HT-29, HCT-116, SE-620, HCT-15, HCC2998, COLO205, HS-578T, NCI/ADR-RES, OVCAR8, OVCAR4, ACHN, SN-12C, 786-O, CAKI-1, UO-31, TK-10, A498, SK-MEL-28, UACC-257, M14, UACC-62, SK
hsa-miR-516b-3p Ribavirin+Pegylated IFNa-2b sensitive tissue (chronic hepatitis C)
hsa-miR-516b-3p Testosterone+Exemestane sensitive cell line (MCF-7)
hsa-miR-516b-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-516b-3p Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)

Error report submission