miRTarBase - #MIRT639640


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pre-miRNA Information
pre-miRNA hsa-mir-4433a   
Genomic Coordinates chr2: 64340759 - 64340839
Description Homo sapiens miR-4433a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4433a-3p
Sequence 51| ACAGGAGUGGGGGUGGGACAU |71
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs751480515 9 dbSNP
rs557760377 15 dbSNP
rs1479580865 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PREX2   
Synonyms DEP.2, DEPDC2, P-REX2, PPP1R129
Description phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2
Transcript NM_024870   
Other Transcripts NM_025170   
Expression
Putative miRNA Targets on PREX2
3'UTR of PREX2
(miRNA target sites are highlighted)		 
>PREX2|NM_024870|3'UTR
   1 AAAGAACTCCCAAGAAACCAGGCAGGCAGAAGCTCCTGAATGCTGGACTAGACAAACTACATGCTGGCTAAACATTCTCC
  81 ACTGAAGATACATCAATGCTTTTTTTTTTTTTTTTTTCTGTAAATCTTTCTTCCCATTGCAAACAAGTAGTGATCAGTTT
 161 ATACTTTGATATTTATGCTGGAAATGGATAGAAGTTCAATCAGACAGTTCAGCTTCACGAACTGATGTCTCTCTGTATTG
 241 ACATTAAGTATTCACTTTTAGAGTAAAATCCATCCCTGGGACATAAAGAAAAAAATATTAGAGATTTAAAAATTAACCAC
 321 CATGCCTCCTCTCCCATTCATTAAAATGGTTTTATTATGCTTGTTTTCATCTTTCCCAAGTGGACACATGTAATAATGGA
 401 GAGTTCCTCTTGAAGAAGGCCATTATTGAAGAAACCTGGCGACATCTTGCAAATCATCATGAGAAATGTTAAGGACAATA
 481 TAGACTGTGTGCTATACATTTTCAGTCCCCCATTTGCAAGAGAGAAAGTCATTAATGTGTAAAAGGTGGAAAAGCATGCT
 561 TTACTCTTTCTCCTAAGGGCTTATTTCTTATTAGAGGAGAAGAAAGCTGACTAAGGCCTCCAGCAGGACTCACTTTCTTC
 641 TAGCTGCCTTTGGGCATCCTTTATTCTTGTGGACAGCTCTAGCAAATCAATGCTATTTTTGGTGTCTGCAATGGGCATGG
 721 CTTCCTTGGGCCATGAATACTGGGTGCTGTGCCATAATGGCCCTGGGGATCAGGGAAGTGCCCTGGGGATCAGGGAGGGG
 801 AACCAGGATGAAGAAGGGGACTGTAAGCCTATTTTAAAACTAAACCTTTAAGTTAGATACCTAAAACTCTTAATTTTATG
 881 AAGGCTCTCATATGAGAGGTCAGACTCTTCAAAGAATACACCATCATGAGAATTTTTCTGTTAAGATATATGTATAAGAT
 961 ATGAAAATAAGGCTTTATTTGTACTTTAAAAGGACCATTAGGGGACTTGTAATTTATGGATGCACAAGGTGTATTCTATC
1041 CTTATTCTAAAGTATATGTAATGTTTATCATTTCTACATTGATGCAATAACATTGTTTTTAGCATAGTAAATACAGTAAT
1121 ATTTATTTTAAATCCATAATTTTCAAACAAAACACTCATGATTGTGATAATTATATGGGTTTACACTAATTTAGTATGTG
1201 AAATGCTTTTCATATCTAAATTATGTGCAAACTATTATTAATTTTTTTTTTATTTTTTGAAACTGAGTCTCACTCTGTTA
1281 CCCAGACTGGAGTGCGGTGGTGCAATCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCCATTCTCTTGCCTCAGC
1361 CTCCCAGGAGCTGGGACTACAGGTGTGCACCACCATGCTCAGCTAATTTTTGTATTTTTAGTAGAGACGTGTTTTCACCA
1441 TGTTGGCCAGGCTGGTCTTGAACTCCTGACATCAAGTGATCCACCCACCTCAGCCTCCCAAAGTGCTAGGATTACAGGCG
1521 TGAGCCGCTGCTCCCGGCCCATTATTAAATTTTAATTTATGAAATTTGATCATGGTTTTCAAACTATTATTAAAACCTTT
1601 ATCATTAACCATTATGTATTGAATAACAAAAATACCATGTTACATGTGTAGGCAATATGTGTATACTACTAGGTAAGGTA
1681 ATAATAATTGTTATTTGGCACAGAAGCTCTAGAGACTTTTGTGAGAAGTCCATATACAATGAAAAACAAGGAACCTAACA
1761 TCAGAGTTTTCAAGAAAAAGTTGAACATTTTGAATTTAATAAAGATATCTTTACAAAAATAACCTTCAAGGATTTAACAT
1841 TTGTAGGACTAATAAAGGAACACAGCTGATTAGCTAGCAAGTCCTTTCATATTGTCATGACTGTTTTCTCATCACCATCC
1921 TGGAAGCAGTAATCCTCATTAGAGGCATGCAAGGGTCATTAAAATGATTTCAGTTGTACTTTGCCATATTTCATGGGGCA
2001 AATTATCAGCTATATTGTGGTATTTATAAGCTAACATATTTTATATTTTTAAGGATCTACTTTCTTCATAATAGAATGTG
2081 CTTCATATTATTTTTAGGGTTAAACATAAGTGTGTCGTCTATCATGCTTGGTACTTACTAAATGCTCAAAAATTAGTAAT
2161 GGTTTATATTAACATCAGTCACTCTAACTTCTGATCGTAATAAAAATTGTAGCTAACACTTATTAAGGGATTACTACATG
2241 CCCAGTAATACCTCCAAATGCTTTGCCTGTATTCTGTTGTTATTGCTTCACTTAATCCTCATAATAATGACGTGACATGG
2321 TACTCTTTTTATCGCGCCCATTTTTAGAGTTGAGGAACCAAAGCAAAGAATAACCCAGTGACTTGCACAAAGTCACATGA
2401 TTGACAAGGGGTAGAACCAAAATTTGAACCCAGGAAGTCTGCCTTCTTAATGCATTATGCTACTTTTCCTTATCAATATA
2481 AGAACTATTGTAATATTACGATGATTTGTAAGTAAATTTGGAGTTATGCGGCATGTGTTGTCATTAAATTATACATCTTG
2561 TATTAAAAAACGGTGAATGGAAATATGTAAATGCTTTAATTATATGAAAATTATAGTGTTTCCTGGACATTTTACAACTC
2641 TGGATGCACATTTTGAGGTAACTCAACAGTGTTGCAATCTGAAAAACTATTTTGTATCATGTTCCTCCTCATCAAAAATA
2721 ACAGTTTTAGATAGTACATCTCATACAACTTTATTATAATTCCAACACAGTGGTAAGAGTAAAAAACATACCTAATGGAT
2801 GAATGAATAATGACAATTTTTTCAATGCCATATGTACCTCCATGTGACATTGGGCATTAAATGGCCTTGAGGTTTTAGGA
2881 TGTGTTTACCTTAATGCTACATGCTCCTCTATAACCAGTGCACCTTCAAATACTGCTAAAACCTGCTAACTTCTTCCAGG
2961 TTCTGAGCATGGACAACTCCCACCGCCCCCCAACCTAAAAGGGAAGGTCATGCATAGAAAGTTTGGATTTTAACTTAGAG
3041 CCTGACTCAAAAATAATTGTGAACTAAAAATTCATAGTCAATACTTTTTAAGCATTCTATTATCTCCTATAATTTTTTCT
3121 AATATTAATTCCAAATATTACAAAATTTAATGTGATATTAAAGTATGAAAAATTTGAGAAGATTAGAATTTTACATGTAT
3201 TTCCATTCCTATTTAAAGAGAGAAAATGGGGAGATAATTTCTGTGCTAGTTTTACTTATATTGGATATATAATATTGAAT
3281 TTATAGTATAAGCTTTATTTTATCAGTTCGCAAATCTGAAGTCTCATACTGTTTTCTGTCTCTTTAAAACACATTCTTCT
3361 GGTGGCTTGGGTTCATTGTGCATTCATTGGCCACTCTTCTTGCAGCAAATTTTAAATCAATTTAAAATTAGGTAAACTTT
3441 TTATGATACTATAATATATATGACGTTGAAATGACATTGGTTCTGAGTCTATTAATTTAAATTTTGGGATCATTACATTC
3521 AGAATGAAATGAAATTGACCTTGATACTAACTTTGAGAGCCAAAAAAATGAATGGGTAAACAAAGCCTAAGGGTCATGTT
3601 AATTAATTTAACAAAACACACTATTTTCAGTCCTTTGGGCTTGTACATTTTATAGACAAAATTAGCATTTATTGATTTGG
3681 AAGTGTTCAATTGAGAGTAAATGACTCTGTGTTTTGAAACTAATACCTTTGCATTTAAAATACTGAAGTATTATTTTGTT
3761 AGTTGAAGTAGATCTTTTCCTGTGTAGCATGATTTAATGCAGAGCAGTTATTCACTTATACTTCTGAAAAGCCATAATAT
3841 TGAAATTTAAAATGAATAGTCTTACTTTAAGGTCACTTTTACTTTACATTTTACTTTAAAGGTCGTTTTTAGACTTTATG
3921 CACTAGTGGTATTGAAACTAACCTTTAATATTTGACTAAATTGCTTGTGAATTTTTGGAAACTATGTTTAATTTTTAAAG
4001 ACATTGTTATGTGAATTATCTTACTAAATTATCACTTAAGAACTCTCTCATAGCAGTAATTTCATTAACACATATATATA
4081 CTAACCAATTTGCTAAATGAATTGTCGGTTGTCCTGCTTAAGTACTAGGGCCAAGCTTTGAAATGACTTAAAGTGATCTG
4161 AATTTTGATTGAGAAAAATAATCTGTCTTCTATCGAATGTTTGAACTTTTAGTGATGAGCCTCAGCAAAGTTTCACCCTG
4241 CATGAAGCAGAACAGGTGGGGGAAAATTACAAGAGGGGTCTGTACCAAAAATGGCCCCAGGATATTCCATTGAACAAATA
4321 TTGACCATTATCTTCCTAGGTGCTACAACTCCATACTAGTCATTACAGTTAGTCTTTGGTTTCACAAAAATGTTACTGCT
4401 TCAAAGGCTTGGCATTAACAGTGATGTCAGCATTCATACTGCCAACAGTCTGCTGGTCATACATGGAAGACTGTTAAAGT
4481 GTGGTCTGTGCATCATTGAGCAATTGTTATGTAGACACAAGGCCTGCTTCACTCAGGATAGCTTGCTCCTCTCGCTGAGA
4561 AGAGATACCTGAAGTCTACTAAGTCTACTAAATGAGATATATATGTGTATGTATATGCCTATATATATTATTATATTTAC
4641 TAGTGTTTGTGATAATGTTATAAAAATTAATAAGATTGTTTTGTTTTGTATGAATGTACGACAAATCGAGTTGTTCAATG
4721 TATTGAATGAATGTCTTACTGTAAGCATCAGAGCTGTCCAACCATGTGTAAATGTACCTGGTCTTTTGATCACTGACACT
4801 ACTTTGCTGTTCAATCTGGAATCAACTGACCTGGCTCTGCCATTGAGAAATAACTAATTTAGAACAAAATTGTTAAATTT
4881 TAAAATTGCATTTCTACTAGAAATAGCTTTGGAGAGTTAATTTTAGGTGCGAATAACAGGATAAATGCTATCTGATCAAG
4961 CATTCATCCGAAAAATGTTTTTGAGAATTCACTTTGTGCAAGGCACAGCTGTTGGGGCTGGTATATGTGTGGACATGTTT
5041 GATTTGAAAACCTTCGTGGTGTCTCTGTGTGTTATTGATCATCTGTGTCTTTTGCTTAAAATGGCATTATTTGTAACACA
5121 AACCTAATATCATATATACAAATATACTGTATGTAGCCAAGAACACTAAATTGGTAAGACGCTTTAGAAAATATGCATTT
5201 GAATTTGAATATCTAATGCCTCAAGCAAATTTATTAGAGTTTCAGATGAATATATATTTTTGTAACTGGCAAGTAAATGA
5281 GTAGAACAGAGCTTTTTGCCTAAAAATATTTTTATAAGTACTCATTTACATAGTATTCATTATTTTAAATGACAAAATAT
5361 CAAATTGGTTCTATAAATAGTAATTGTTTTGAATATATCCATACTTAACATCATATGAAATCCAAAATTTAATGATAAAT
5441 TTCATCTGGATGTGTTATTATAAAAGTCATCTTTTTTTCCTTTGTAAAATATCCATGTAACATAGCTTCCATTACTCCAT
5521 ATTTTATGTATGGTTAAAATTATCAAAGTGCATTATGTATTTTATATTGTTTATTTTTGTCTGCATGAAAGATTGGAATA
5601 GTAACCGTGTATGATAAATGTTAATAATAATAAAGTGAAATGTAGTATGACCAATAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uacagGGUGGGGGUGAGGACa 5'
               :|||:|: |||:||| 
Target 5' atcagTCACTCTAACTTCTGa 3'
 2174 - 2194 144.00 -17.60
2 
miRNA  3' uaCAGGGUGGGG-GUGAGGACa 5'
            | |: ::|::  ||||||| 
Target 5' caGGCTGGTCTTGAACTCCTGa 3'
 1448 - 1469 143.00 -15.50
3 
miRNA  3' uacaGGGUGGGGGUGAGGACa 5'
              ::|||:: :|||:||| 
Target 5' gttaTTCACTTATACTTCTGa 3'
 3807 - 3827 141.00 -16.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN24311355 5 COSMIC
COSN31525786 5 COSMIC
COSN30742787 10 COSMIC
COSN30155515 20 COSMIC
COSN30480941 36 COSMIC
COSN31575266 37 COSMIC
COSN31563699 39 COSMIC
COSN30732875 54 COSMIC
COSN31503316 64 COSMIC
COSN30470628 72 COSMIC
COSN30100472 79 COSMIC
COSN30469684 81 COSMIC
COSN30728485 90 COSMIC
COSN5114269 117 COSMIC
COSN20105549 118 COSMIC
COSN27324880 118 COSMIC
COSN6519027 119 COSMIC
COSN15659957 158 COSMIC
COSN16637537 195 COSMIC
COSN28964779 200 COSMIC
COSN1367497 277 COSMIC
COSN5114271 308 COSMIC
COSN9666856 414 COSMIC
COSN6360406 477 COSMIC
COSN6519028 496 COSMIC
COSN17836146 520 COSMIC
COSN9267853 608 COSMIC
COSN31778689 716 COSMIC
COSN30033742 808 COSMIC
COSN9666857 908 COSMIC
COSN7676077 1108 COSMIC
COSN17805166 1233 COSMIC
COSN9666858 1391 COSMIC
COSN4882059 1535 COSMIC
COSN4941472 1661 COSMIC
COSN27640717 1717 COSMIC
COSN29465811 1839 COSMIC
COSN9666859 1859 COSMIC
COSN6360408 1987 COSMIC
COSN8097464 2068 COSMIC
COSN28318481 2117 COSMIC
COSN5114273 2118 COSMIC
COSN8097465 2238 COSMIC
COSN21576601 2301 COSMIC
COSN16577072 2312 COSMIC
COSN16645484 2336 COSMIC
COSN18817045 2367 COSMIC
COSN16552242 2485 COSMIC
COSN27333290 2493 COSMIC
COSN2286384 2495 COSMIC
COSN17906006 2541 COSMIC
COSN9267854 2551 COSMIC
COSN8097466 2663 COSMIC
COSN17393942 2799 COSMIC
COSN17590411 2952 COSMIC
COSN30291213 2981 COSMIC
COSN6360409 2995 COSMIC
COSN6360410 2996 COSMIC
COSN2286385 3227 COSMIC
COSN23681988 3372 COSMIC
COSN23049286 3442 COSMIC
COSN17387311 3595 COSMIC
COSN6360411 3649 COSMIC
COSN27089104 3651 COSMIC
COSN26053110 3737 COSMIC
COSN30245654 3897 COSMIC
COSN2286386 3950 COSMIC
COSN20714224 3970 COSMIC
COSN5686675 4005 COSMIC
COSN2286387 4034 COSMIC
COSN5686676 4047 COSMIC
COSN7676079 4107 COSMIC
COSN8097467 4195 COSMIC
COSN22752884 4235 COSMIC
COSN27575978 4342 COSMIC
COSN5114274 4343 COSMIC
COSN31778685 4507 COSMIC
COSN8097468 4536 COSMIC
COSN23540599 4555 COSMIC
COSN1367498 4635 COSMIC
COSN9267855 4775 COSMIC
COSN18817046 4953 COSMIC
COSN29173545 4960 COSMIC
COSN2286388 5118 COSMIC
COSN26498504 5120 COSMIC
COSN17660266 5153 COSMIC
COSN6360412 5181 COSMIC
COSN26031164 5219 COSMIC
COSN8097469 5256 COSMIC
COSN32115621 5263 COSMIC
COSN8859925 5338 COSMIC
COSN20350640 5404 COSMIC
COSN19270201 5514 COSMIC
COSN2286389 5555 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs752475501 3 dbSNP
rs1317481848 5 dbSNP
rs1360175656 7 dbSNP
rs1214154958 9 dbSNP
rs947445427 10 dbSNP
rs1272558011 19 dbSNP
rs1296757445 34 dbSNP
rs1309567356 39 dbSNP
rs755861917 40 dbSNP
rs1263051641 43 dbSNP
rs1460527920 45 dbSNP
rs373322617 53 dbSNP
rs1304291723 58 dbSNP
rs1407090907 60 dbSNP
rs903653212 61 dbSNP
rs1000825927 62 dbSNP
rs1401484261 75 dbSNP
rs1256801040 78 dbSNP
rs1483087060 84 dbSNP
rs1031335221 90 dbSNP
rs1477742799 92 dbSNP
rs527588238 93 dbSNP
rs1050931033 94 dbSNP
rs1487164443 97 dbSNP
rs766061220 99 dbSNP
rs774781820 99 dbSNP
rs10581964 100 dbSNP
rs1262173096 100 dbSNP
rs1277952911 100 dbSNP
rs1347121976 100 dbSNP
rs1432019236 100 dbSNP
rs1491186138 100 dbSNP
rs35559659 100 dbSNP
rs753533076 100 dbSNP
rs759819451 100 dbSNP
rs869119513 100 dbSNP
rs878934514 100 dbSNP
rs878958775 100 dbSNP
rs1491298863 101 dbSNP
rs1491238402 117 dbSNP
rs997172968 117 dbSNP
rs1178729242 118 dbSNP
rs200889201 118 dbSNP
rs1450282662 119 dbSNP
rs1179212351 121 dbSNP
rs1379382564 123 dbSNP
rs547624018 124 dbSNP
rs1186822076 125 dbSNP
rs1247302436 125 dbSNP
rs1476278254 126 dbSNP
rs1437574814 127 dbSNP
rs560857535 130 dbSNP
rs1016077299 131 dbSNP
rs529607002 134 dbSNP
rs1004112897 147 dbSNP
rs953127437 162 dbSNP
rs138259695 163 dbSNP
rs1196277952 173 dbSNP
rs898154583 175 dbSNP
rs995220717 180 dbSNP
rs1215463003 185 dbSNP
rs1300513327 187 dbSNP
rs1023096545 198 dbSNP
rs1282607267 200 dbSNP
rs1401882423 202 dbSNP
rs369212990 210 dbSNP
rs1222108819 217 dbSNP
rs1464133105 220 dbSNP
rs1399376610 234 dbSNP
rs1018478359 236 dbSNP
rs775716406 237 dbSNP
rs1411317787 246 dbSNP
rs1411408736 246 dbSNP
rs974374193 249 dbSNP
rs1375411119 273 dbSNP
rs1181114227 284 dbSNP
rs1244666705 285 dbSNP
rs535103284 285 dbSNP
rs1221294904 289 dbSNP
rs1176163210 299 dbSNP
rs1456941401 321 dbSNP
rs981994026 325 dbSNP
rs1205873991 332 dbSNP
rs918820512 341 dbSNP
rs1309828246 351 dbSNP
rs930198247 355 dbSNP
rs1245782723 358 dbSNP
rs2280638 361 dbSNP
rs568524639 364 dbSNP
rs1208313216 368 dbSNP
rs956236858 369 dbSNP
rs1448893819 370 dbSNP
rs2280639 376 dbSNP
rs914867019 380 dbSNP
rs2280640 384 dbSNP
rs375255221 387 dbSNP
rs1425072165 391 dbSNP
rs566307944 398 dbSNP
rs1386646858 402 dbSNP
rs534906744 416 dbSNP
rs1456416316 423 dbSNP
rs572914591 427 dbSNP
rs540517263 432 dbSNP
rs1178484157 437 dbSNP
rs534024129 441 dbSNP
rs936485320 442 dbSNP
rs555269348 446 dbSNP
rs1490621002 451 dbSNP
rs1461742656 462 dbSNP
rs890949103 466 dbSNP
rs939868388 468 dbSNP
rs1052393181 475 dbSNP
rs143856179 489 dbSNP
rs1365323936 497 dbSNP
rs1398702019 500 dbSNP
rs1439285159 508 dbSNP
rs1302488110 510 dbSNP
rs1405278613 519 dbSNP
rs995546838 521 dbSNP
rs1296162691 526 dbSNP
rs997410945 533 dbSNP
rs1294439286 539 dbSNP
rs766332517 543 dbSNP
rs537423181 547 dbSNP
rs866130391 549 dbSNP
rs1217622017 550 dbSNP
rs1022642104 551 dbSNP
rs1199362472 557 dbSNP
rs557428408 557 dbSNP
rs368077379 559 dbSNP
rs1280353007 573 dbSNP
rs1271468115 576 dbSNP
rs888775903 577 dbSNP
rs1485661592 584 dbSNP
rs1002565444 585 dbSNP
rs1035438746 587 dbSNP
rs2280641 592 dbSNP
rs1282520769 593 dbSNP
rs1016407704 601 dbSNP
rs374856053 601 dbSNP
rs1347376515 611 dbSNP
rs546326251 617 dbSNP
rs1385150438 622 dbSNP
rs1290285290 623 dbSNP
rs1021800510 624 dbSNP
rs1404680103 632 dbSNP
rs1176584982 633 dbSNP
rs1481041738 637 dbSNP
rs1432167180 639 dbSNP
rs780644635 644 dbSNP
rs1191871816 648 dbSNP
rs767286975 649 dbSNP
rs996090521 653 dbSNP
rs553195366 655 dbSNP
rs975128388 658 dbSNP
rs1246999338 661 dbSNP
rs1262569439 667 dbSNP
rs921939723 668 dbSNP
rs1325586594 670 dbSNP
rs954905706 671 dbSNP
rs1025785903 674 dbSNP
rs1226354207 677 dbSNP
rs572166238 680 dbSNP
rs1326832714 681 dbSNP
rs201963926 683 dbSNP
rs951632220 683 dbSNP
rs34211699 688 dbSNP
rs540842129 691 dbSNP
rs1381661936 696 dbSNP
rs560820776 699 dbSNP
rs1470671721 702 dbSNP
rs1408869538 711 dbSNP
rs907999296 714 dbSNP
rs1461762729 715 dbSNP
rs969360214 716 dbSNP
rs980904734 720 dbSNP
rs1173056219 723 dbSNP
rs1169319058 729 dbSNP
rs752230646 735 dbSNP
rs529966041 738 dbSNP
rs1242841021 750 dbSNP
rs936742391 752 dbSNP
rs542999157 753 dbSNP
rs1052718097 755 dbSNP
rs1434756120 760 dbSNP
rs913696403 760 dbSNP
rs933232900 767 dbSNP
rs1252840591 779 dbSNP
rs755742421 785 dbSNP
rs1315329497 823 dbSNP
rs1454073383 824 dbSNP
rs563333161 829 dbSNP
rs1341334973 830 dbSNP
rs1399651250 836 dbSNP
rs888807124 837 dbSNP
rs183199986 841 dbSNP
rs1002532560 851 dbSNP
rs78735291 852 dbSNP
rs577103997 855 dbSNP
rs891553310 857 dbSNP
rs1010330456 858 dbSNP
rs1384787789 862 dbSNP
rs147259425 863 dbSNP
rs548829988 868 dbSNP
rs1362108614 870 dbSNP
rs1181254050 872 dbSNP
rs1219942565 875 dbSNP
rs969318430 876 dbSNP
rs1252580934 888 dbSNP
rs993220841 890 dbSNP
rs1207784965 895 dbSNP
rs1488387129 905 dbSNP
rs1490131886 912 dbSNP
rs1026238429 913 dbSNP
rs996431312 922 dbSNP
rs756041916 925 dbSNP
rs1351123203 927 dbSNP
rs140826587 928 dbSNP
rs1013833020 939 dbSNP
rs1336804820 946 dbSNP
rs1025164826 950 dbSNP
rs969391453 951 dbSNP
rs1029694714 955 dbSNP
rs1181996216 957 dbSNP
rs1413665321 960 dbSNP
rs749660777 962 dbSNP
rs1358711889 971 dbSNP
rs1157998416 980 dbSNP
rs987473299 982 dbSNP
rs771259428 993 dbSNP
rs1197231136 994 dbSNP
rs962134872 996 dbSNP
rs972537822 1004 dbSNP
rs925285313 1005 dbSNP
rs200084784 1006 dbSNP
rs35412974 1007 dbSNP
rs958367166 1011 dbSNP
rs537785051 1013 dbSNP
rs1044316753 1022 dbSNP
rs1352253288 1029 dbSNP
rs988209812 1033 dbSNP
rs1272611008 1034 dbSNP
rs1342543531 1038 dbSNP
rs188266216 1041 dbSNP
rs748220672 1042 dbSNP
rs1284320697 1050 dbSNP
rs114618441 1056 dbSNP
rs938314096 1071 dbSNP
rs1401319577 1080 dbSNP
rs34263918 1082 dbSNP
rs539461893 1084 dbSNP
rs1469217949 1086 dbSNP
rs1429990883 1096 dbSNP
rs1243716724 1105 dbSNP
rs1474313145 1107 dbSNP
rs1241115277 1120 dbSNP
rs553396465 1135 dbSNP
rs1448417205 1137 dbSNP
rs1260686036 1140 dbSNP
rs1202558553 1149 dbSNP
rs1264318029 1150 dbSNP
rs1221244701 1156 dbSNP
rs910484012 1159 dbSNP
rs545639202 1161 dbSNP
rs1215367278 1163 dbSNP
rs1281683203 1167 dbSNP
rs1443826024 1169 dbSNP
rs891520744 1175 dbSNP
rs1009921502 1180 dbSNP
rs1210179061 1182 dbSNP
rs1236409625 1185 dbSNP
rs1409726629 1189 dbSNP
rs1334786756 1197 dbSNP
rs1452017156 1200 dbSNP
rs1472072783 1213 dbSNP
rs1181053153 1214 dbSNP
rs1381241843 1219 dbSNP
rs1408175822 1221 dbSNP
rs6472392 1222 dbSNP
rs1168336559 1225 dbSNP
rs904684237 1230 dbSNP
rs1240888289 1242 dbSNP
rs996790223 1242 dbSNP
rs1157296939 1243 dbSNP
rs1244248873 1247 dbSNP
rs1404582519 1253 dbSNP
rs1029208888 1254 dbSNP
rs1333538631 1271 dbSNP
rs1357536036 1272 dbSNP
rs191007157 1274 dbSNP
rs1338832882 1275 dbSNP
rs1311391301 1276 dbSNP
rs898794906 1282 dbSNP
rs1353928920 1283 dbSNP
rs1239154726 1285 dbSNP
rs1329216941 1291 dbSNP
rs879802082 1296 dbSNP
rs12543631 1297 dbSNP
rs1162570402 1300 dbSNP
rs1444907575 1302 dbSNP
rs1386535219 1303 dbSNP
rs1047473563 1310 dbSNP
rs924884357 1322 dbSNP
rs934884434 1328 dbSNP
rs1479942244 1329 dbSNP
rs1014951700 1332 dbSNP
rs1054559177 1340 dbSNP
rs1205596915 1346 dbSNP
rs372416533 1348 dbSNP
rs962067732 1354 dbSNP
rs973505371 1366 dbSNP
rs1360506425 1368 dbSNP
rs1314932114 1369 dbSNP
rs1372453782 1370 dbSNP
rs1280086423 1373 dbSNP
rs1028193201 1374 dbSNP
rs952536946 1377 dbSNP
rs7004629 1385 dbSNP
rs1200041094 1386 dbSNP
rs1025071543 1387 dbSNP
rs938617357 1388 dbSNP
rs905472677 1391 dbSNP
rs1418015332 1403 dbSNP
rs1407833979 1406 dbSNP
rs1002421166 1408 dbSNP
rs560933314 1425 dbSNP
rs992724972 1428 dbSNP
rs1180083241 1429 dbSNP
rs543358579 1430 dbSNP
rs563437799 1435 dbSNP
rs1222296723 1442 dbSNP
rs958056534 1458 dbSNP
rs988654519 1460 dbSNP
rs1021036412 1471 dbSNP
rs1213666845 1473 dbSNP
rs954746877 1477 dbSNP
rs912888515 1480 dbSNP
rs987319700 1493 dbSNP
rs1423081868 1509 dbSNP
rs1230129981 1511 dbSNP
rs1343626584 1516 dbSNP
rs186675129 1520 dbSNP
rs943288053 1521 dbSNP
rs772736932 1527 dbSNP
rs920292226 1528 dbSNP
rs1400914451 1536 dbSNP
rs928971043 1537 dbSNP
rs1047500314 1540 dbSNP
rs6984731 1541 dbSNP
rs1427818101 1542 dbSNP
rs949782688 1551 dbSNP
rs1199073607 1572 dbSNP
rs1042811774 1576 dbSNP
rs559379140 1579 dbSNP
rs904275593 1581 dbSNP
rs1332612357 1586 dbSNP
rs932137429 1590 dbSNP
rs1273862451 1592 dbSNP
rs528230863 1597 dbSNP
rs1262449942 1598 dbSNP
rs1219897558 1602 dbSNP
rs1313772291 1606 dbSNP
rs1258201377 1612 dbSNP
rs1381287307 1619 dbSNP
rs905326845 1625 dbSNP
rs890688315 1640 dbSNP
rs548791066 1647 dbSNP
rs192600394 1648 dbSNP
rs17463773 1651 dbSNP
rs1032593654 1667 dbSNP
rs893827461 1673 dbSNP
rs1467037874 1677 dbSNP
rs1194623728 1678 dbSNP
rs1269835937 1679 dbSNP
rs1015218330 1681 dbSNP
rs897826262 1682 dbSNP
rs1262704633 1683 dbSNP
rs1428138041 1683 dbSNP
rs1009582595 1684 dbSNP
rs1452564226 1693 dbSNP
rs1198671750 1705 dbSNP
rs1020942960 1709 dbSNP
rs954777421 1710 dbSNP
rs1171412310 1722 dbSNP
rs768887986 1723 dbSNP
rs1226421370 1724 dbSNP
rs1423043955 1728 dbSNP
rs12546271 1734 dbSNP
rs1243081935 1738 dbSNP
rs1166099493 1741 dbSNP
rs964571396 1743 dbSNP
rs376273134 1752 dbSNP
rs1397108176 1760 dbSNP
rs1405068954 1761 dbSNP
rs1392862924 1767 dbSNP
rs973753513 1772 dbSNP
rs12548558 1773 dbSNP
rs370712819 1778 dbSNP
rs539791537 1779 dbSNP
rs929186810 1781 dbSNP
rs983099171 1782 dbSNP
rs80026106 1786 dbSNP
rs949813186 1796 dbSNP
rs1044117354 1798 dbSNP
rs926823572 1806 dbSNP
rs1248341357 1816 dbSNP
rs913192803 1825 dbSNP
rs938179106 1831 dbSNP
rs200930049 1854 dbSNP
rs386726407 1854 dbSNP
rs62520603 1855 dbSNP
rs34931257 1856 dbSNP
rs71503415 1856 dbSNP
rs35568953 1857 dbSNP
rs76879975 1857 dbSNP
rs74887307 1858 dbSNP
rs1342726582 1859 dbSNP
rs1305525006 1861 dbSNP
rs1050209210 1867 dbSNP
rs1267744168 1867 dbSNP
rs1310296166 1872 dbSNP
rs1461594518 1877 dbSNP
rs1422966519 1880 dbSNP
rs1365189382 1890 dbSNP
rs1163850552 1897 dbSNP
rs1473828590 1898 dbSNP
rs1361950447 1900 dbSNP
rs1357757700 1902 dbSNP
rs1180959436 1903 dbSNP
rs1054334798 1917 dbSNP
rs894075216 1918 dbSNP
rs890615239 1932 dbSNP
rs1197096400 1938 dbSNP
rs1009783240 1941 dbSNP
rs1042419521 1945 dbSNP
rs890452024 1949 dbSNP
rs866706375 1951 dbSNP
rs201764093 1956 dbSNP
rs1489369756 1966 dbSNP
rs1194660011 1974 dbSNP
rs1347962974 1981 dbSNP
rs994818752 1987 dbSNP
rs1238937805 1994 dbSNP
rs1290599298 1999 dbSNP
rs1426794473 2002 dbSNP
rs1403501654 2006 dbSNP
rs536856545 2024 dbSNP
rs1324490322 2026 dbSNP
rs1017681528 2036 dbSNP
rs557184728 2037 dbSNP
rs1370083728 2039 dbSNP
rs905213948 2042 dbSNP
rs964933983 2044 dbSNP
rs759425097 2047 dbSNP
rs1414097893 2048 dbSNP
rs1173915812 2049 dbSNP
rs1002683646 2050 dbSNP
rs1458388246 2051 dbSNP
rs531993379 2056 dbSNP
rs767496337 2061 dbSNP
rs144783226 2064 dbSNP
rs1208884941 2065 dbSNP
rs1421074641 2069 dbSNP
rs1020126070 2072 dbSNP
rs967713765 2079 dbSNP
rs983298620 2081 dbSNP
rs752173479 2086 dbSNP
rs545769399 2088 dbSNP
rs925591650 2092 dbSNP
rs1438857528 2110 dbSNP
rs1324973137 2113 dbSNP
rs537509963 2118 dbSNP
rs911645977 2121 dbSNP
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rs367796459 2137 dbSNP
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rs181966623 4913 dbSNP
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rs1207275744 5152 dbSNP
rs1333079841 5153 dbSNP
rs1293070305 5155 dbSNP
rs1039909983 5175 dbSNP
rs537414468 5181 dbSNP
rs939075486 5182 dbSNP
rs1390929830 5185 dbSNP
rs1397337936 5186 dbSNP
rs1057303269 5190 dbSNP
rs1241073657 5191 dbSNP
rs1459822848 5192 dbSNP
rs1393369520 5194 dbSNP
rs916031251 5195 dbSNP
rs13271545 5196 dbSNP
rs1361747434 5198 dbSNP
rs1047342765 5211 dbSNP
rs1419103064 5216 dbSNP
rs571247162 5226 dbSNP
rs1043310453 5227 dbSNP
rs750811775 5233 dbSNP
rs554096766 5240 dbSNP
rs1214757475 5244 dbSNP
rs769367481 5248 dbSNP
rs1259138783 5250 dbSNP
rs756516435 5267 dbSNP
rs901258419 5270 dbSNP
rs998641861 5275 dbSNP
rs533688464 5276 dbSNP
rs1335056751 5292 dbSNP
rs1309244773 5294 dbSNP
rs1028189756 5298 dbSNP
rs1012008920 5301 dbSNP
rs553454365 5306 dbSNP
rs1326300166 5310 dbSNP
rs1462784285 5331 dbSNP
rs1382537562 5333 dbSNP
rs1157577307 5334 dbSNP
rs1454003387 5344 dbSNP
rs889616489 5351 dbSNP
rs1005493305 5352 dbSNP
rs1334242429 5357 dbSNP
rs1453092065 5366 dbSNP
rs772851105 5368 dbSNP
rs1194833673 5374 dbSNP
rs1453630976 5379 dbSNP
rs1003865415 5381 dbSNP
rs1351755333 5382 dbSNP
rs540348104 5386 dbSNP
rs186594267 5387 dbSNP
rs1058194 5404 dbSNP
rs766186739 5405 dbSNP
rs1034610000 5450 dbSNP
rs914966149 5461 dbSNP
rs1324406593 5462 dbSNP
rs1317465481 5468 dbSNP
rs960497121 5474 dbSNP
rs1177640803 5475 dbSNP
rs556553812 5479 dbSNP
rs1249348522 5480 dbSNP
rs1416960048 5481 dbSNP
rs1200906995 5485 dbSNP
rs990970106 5489 dbSNP
rs916102989 5493 dbSNP
rs975188768 5494 dbSNP
rs1395177996 5496 dbSNP
rs1174747063 5497 dbSNP
rs1469683972 5498 dbSNP
rs948887278 5503 dbSNP
rs978895739 5521 dbSNP
rs922756791 5522 dbSNP
rs926211556 5527 dbSNP
rs1447775486 5529 dbSNP
rs934857638 5532 dbSNP
rs1265559534 5533 dbSNP
rs1174886713 5546 dbSNP
rs1485352839 5549 dbSNP
rs1281138144 5551 dbSNP
rs1220872017 5552 dbSNP
rs983399603 5553 dbSNP
rs1269358478 5556 dbSNP
rs1053114959 5558 dbSNP
rs576703385 5561 dbSNP
rs1328010076 5568 dbSNP
rs901160584 5572 dbSNP
rs1310641445 5580 dbSNP
rs368616656 5592 dbSNP
rs1050255530 5595 dbSNP
rs191501290 5598 dbSNP
rs1298012882 5600 dbSNP
rs182882525 5607 dbSNP
rs1058196 5608 dbSNP
rs1167878346 5612 dbSNP
rs1194753183 5613 dbSNP
rs1426251692 5618 dbSNP
rs1283932117 5622 dbSNP
rs894503349 5627 dbSNP
rs1344982200 5645 dbSNP
rs561374813 5652 dbSNP
rs3179026 5654 dbSNP
rs1212399041 5655 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084067. RNA binding protein: AGO2. Condition:CLIP_emetine_SantaCruzAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uaCAGGGUGGGG-GUGAGGACa 5'
            | |: ::|::  ||||||| 
Target 5' caGGCUGGUCUUGAACUCCUGa 3'
 		2 - 23
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084067
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SantaCruzAb
Location of target site ENST00000288368.4 | 3UTR | CCAGGCUGGUCUUGAACUCCUGACAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
256 hsa-miR-4433a-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT088097 SEPT2 septin 2 2 2
MIRT143134 MGRN1 mahogunin ring finger 1 2 2
MIRT153912 NCOA3 nuclear receptor coactivator 3 2 2
MIRT154894 GNAS GNAS complex locus 2 4
MIRT200996 ZNF805 zinc finger protein 805 2 2
MIRT215729 C5ORF51 chromosome 5 open reading frame 51 2 10
MIRT235593 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT263250 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT317951 CDC5L cell division cycle 5 like 2 4
MIRT325572 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT354739 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT444552 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 4
MIRT446978 SUSD5 sushi domain containing 5 2 2
MIRT451036 ZNF610 zinc finger protein 610 2 2
MIRT451596 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT452025 NLRP6 NLR family pyrin domain containing 6 2 2
MIRT452594 CA6 carbonic anhydrase 6 2 2
MIRT452768 TCEA3 transcription elongation factor A3 2 4
MIRT452959 ZNF844 zinc finger protein 844 2 2
MIRT453191 ACSF2 acyl-CoA synthetase family member 2 2 2
MIRT453382 RHD Rh blood group D antigen 2 2
MIRT453685 CEBPD CCAAT/enhancer binding protein delta 2 2
MIRT455272 DDX39B DExD-box helicase 39B 2 8
MIRT455346 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT456494 SERAC1 serine active site containing 1 2 2
MIRT456585 NID1 nidogen 1 2 2
MIRT456888 DDA1 DET1 and DDB1 associated 1 2 2
MIRT457123 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT457852 ZNF324B zinc finger protein 324B 2 2
MIRT457987 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT459278 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT459625 SLC25A33 solute carrier family 25 member 33 2 2
MIRT459715 SGK494 uncharacterized serine/threonine-protein kinase SgK494 2 2
MIRT460057 RPL22L1 ribosomal protein L22 like 1 2 2
MIRT460182 UNK unkempt family zinc finger 2 6
MIRT460288 PDE11A phosphodiesterase 11A 2 2
MIRT460841 EGF epidermal growth factor 2 4
MIRT460860 TBC1D19 TBC1 domain family member 19 2 2
MIRT461519 EMC7 ER membrane protein complex subunit 7 2 2
MIRT461729 SLC27A1 solute carrier family 27 member 1 2 4
MIRT461821 SNAP23 synaptosome associated protein 23 2 2
MIRT462066 CCDC77 coiled-coil domain containing 77 2 4
MIRT462084 MSANTD2 Myb/SANT DNA binding domain containing 2 2 2
MIRT462508 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 10
MIRT464239 VCP valosin containing protein 2 2
MIRT465316 TRAF5 TNF receptor associated factor 5 2 2
MIRT466549 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467128 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 8
MIRT468091 SHCBP1 SHC binding and spindle associated 1 2 2
MIRT469630 RAD21 RAD21 cohesin complex component 2 6
MIRT471097 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472704 MYBL1 MYB proto-oncogene like 1 2 2
MIRT472830 MTMR10 myotubularin related protein 10 2 2
MIRT472872 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT472895 MTDH metadherin 2 2
MIRT473728 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT473859 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT474047 LONRF1 LON peptidase N-terminal domain and ring finger 1 2 2
MIRT474297 LAMC1 laminin subunit gamma 1 2 2
MIRT474658 KLF13 Kruppel like factor 13 2 2
MIRT475234 IKZF3 IKAROS family zinc finger 3 2 2
MIRT475500 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT475742 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT475793 HDGF heparin binding growth factor 2 2
MIRT477254 ERGIC2 ERGIC and golgi 2 2 2
MIRT478228 DDX52 DExD-box helicase 52 2 2
MIRT478393 DCTN5 dynactin subunit 5 2 2
MIRT478754 CS citrate synthase 2 2
MIRT478827 CRKL CRK like proto-oncogene, adaptor protein 2 4
MIRT480234 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT480597 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT484121 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT484689 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT486331 C11orf54 chromosome 11 open reading frame 54 2 4
MIRT488599 FAM3C family with sequence similarity 3 member C 2 8
MIRT488833 MRRF mitochondrial ribosome recycling factor 2 2
MIRT492523 RAB15 RAB15, member RAS oncogene family 2 4
MIRT493632 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT500026 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501075 SMAD7 SMAD family member 7 2 8
MIRT503094 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503336 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT505465 STMN1 stathmin 1 2 4
MIRT505726 SERTAD3 SERTA domain containing 3 2 4
MIRT509333 MS4A4A membrane spanning 4-domains A4A 2 2
MIRT509978 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 4
MIRT513068 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT513446 EMP1 epithelial membrane protein 1 2 6
MIRT513736 PSD3 pleckstrin and Sec7 domain containing 3 2 4
MIRT513996 CENPQ centromere protein Q 2 4
MIRT516538 MIXL1 Mix paired-like homeobox 2 2
MIRT517606 SAV1 salvador family WW domain containing protein 1 2 2
MIRT518064 CEP89 centrosomal protein 89 2 2
MIRT518119 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT518325 WDR92 WD repeat domain 92 2 2
MIRT519048 ABCB11 ATP binding cassette subfamily B member 11 2 2
MIRT520972 SPPL2A signal peptide peptidase like 2A 2 4
MIRT521359 RPL35A ribosomal protein L35a 2 2
MIRT523359 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT523801 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT524622 C7orf73 short transmembrane mitochondrial protein 1 2 2
MIRT525550 PHB2 prohibitin 2 2 4
MIRT529709 ZBTB49 zinc finger and BTB domain containing 49 2 2
MIRT531605 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT532387 UMPS uridine monophosphate synthetase 2 2
MIRT534468 SCD stearoyl-CoA desaturase 2 4
MIRT537546 ETNK1 ethanolamine kinase 1 2 2
MIRT541619 C11orf31 selenoprotein H 2 2
MIRT548380 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 4
MIRT549523 HDDC2 HD domain containing 2 2 2
MIRT549774 SOD2 superoxide dismutase 2 2 2
MIRT550578 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551498 CENPN centromere protein N 2 4
MIRT552301 ITGA3 integrin subunit alpha 3 2 2
MIRT555400 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT556399 LUC7L LUC7 like 2 2
MIRT557047 HOXB3 homeobox B3 2 2
MIRT558072 ERO1L endoplasmic reticulum oxidoreductase 1 alpha 1 2
MIRT559659 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT561239 ZNF354B zinc finger protein 354B 2 2
MIRT566899 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT568786 FAM120B family with sequence similarity 120B 2 2
MIRT574014 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT574885 Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 2 2
MIRT575243 Serping1 serine (or cysteine) peptidase inhibitor, clade G, member 1 2 2
MIRT576194 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576309 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576484 Lhx4 LIM homeobox protein 4 2 3
MIRT576646 Mill2 MHC I like leukocyte 2 1 1
MIRT576708 Kras Kirsten rat sarcoma viral oncogene homolog 2 2
MIRT576855 Socs6 suppressor of cytokine signaling 6 2 2
MIRT576950 Aldoa aldolase A, fructose-bisphosphate 2 2
MIRT617133 ZNF556 zinc finger protein 556 2 4
MIRT617928 ZNF783 zinc finger family member 783 2 2
MIRT618981 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT621100 SIX3 SIX homeobox 3 2 2
MIRT624537 BROX BRO1 domain and CAAX motif containing 2 2
MIRT625663 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT627059 DCTN6 dynactin subunit 6 2 2
MIRT628319 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT630859 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT632295 TMEM65 transmembrane protein 65 2 2
MIRT634115 ZNF207 zinc finger protein 207 2 2
MIRT634736 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT635655 NDST3 N-deacetylase and N-sulfotransferase 3 2 2
MIRT635772 PDCL3 phosducin like 3 2 2
MIRT635911 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT636365 OGFRL1 opioid growth factor receptor like 1 2 4
MIRT637251 GLRX2 glutaredoxin 2 2 2
MIRT638705 FZD4 frizzled class receptor 4 2 2
MIRT639640 PREX2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 2 2
MIRT639676 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT642267 SMIM17 small integral membrane protein 17 2 2
MIRT642372 ZNF581 zinc finger protein 581 2 2
MIRT643545 SLC25A17 solute carrier family 25 member 17 2 2
MIRT647994 PDE12 phosphodiesterase 12 2 2
MIRT649094 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT650993 ZNF770 zinc finger protein 770 2 2
MIRT651956 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT652977 SUN2 Sad1 and UNC84 domain containing 2 2 2
MIRT654389 RBM12B RNA binding motif protein 12B 2 2
MIRT655637 OLFML2A olfactomedin like 2A 2 2
MIRT655729 NRXN3 neurexin 3 2 2
MIRT658171 FCHSD1 FCH and double SH3 domains 1 2 2
MIRT660937 ACOX1 acyl-CoA oxidase 1 2 2
MIRT662112 CERKL ceramide kinase like 2 2
MIRT662302 MPV17L MPV17 mitochondrial inner membrane protein like 2 2
MIRT662993 TMEM59 transmembrane protein 59 2 2
MIRT663071 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT663704 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663864 MUC20 mucin 20, cell surface associated 2 2
MIRT665185 HAUS5 HAUS augmin like complex subunit 5 2 4
MIRT665402 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT665688 TNPO3 transportin 3 2 2
MIRT665795 TMEM170A transmembrane protein 170A 2 2
MIRT665847 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT666999 PDPN podoplanin 2 2
MIRT667598 LIPC lipase C, hepatic type 2 2
MIRT668576 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT670960 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT671187 ZNF891 zinc finger protein 891 2 2
MIRT671739 ZNF451 zinc finger protein 451 2 2
MIRT672745 ZNF585B zinc finger protein 585B 2 4
MIRT673446 ZNF583 zinc finger protein 583 2 2
MIRT679843 GPR75 G protein-coupled receptor 75 2 2
MIRT680556 ZNF584 zinc finger protein 584 2 2
MIRT680661 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT681285 RFC2 replication factor C subunit 2 2 2
MIRT683264 ZNF329 zinc finger protein 329 2 2
MIRT684519 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT685065 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685157 DTWD2 DTW domain containing 2 2 2
MIRT685168 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT685470 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT686001 NEK4 NIMA related kinase 4 2 2
MIRT687027 RNF24 ring finger protein 24 2 2
MIRT687543 MOB1B MOB kinase activator 1B 2 2
MIRT687592 MANEAL mannosidase endo-alpha like 2 2
MIRT687753 KIAA1328 KIAA1328 2 2
MIRT688050 GLUL glutamate-ammonia ligase 2 2
MIRT688374 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 2 2
MIRT688802 CBFA2T3 CBFA2/RUNX1 translocation partner 3 2 2
MIRT688957 ATXN3 ataxin 3 2 2
MIRT689281 C5AR2 complement component 5a receptor 2 2 2
MIRT689988 NNMT nicotinamide N-methyltransferase 2 2
MIRT689997 MMP17 matrix metallopeptidase 17 2 2
MIRT690014 LUZP2 leucine zipper protein 2 2 2
MIRT690161 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690379 ZSWIM7 zinc finger SWIM-type containing 7 2 2
MIRT690563 MICA MHC class I polypeptide-related sequence A 2 2
MIRT691891 EVC EvC ciliary complex subunit 1 2 2
MIRT693107 SCNM1 sodium channel modifier 1 2 2
MIRT693832 ZFP64 ZFP64 zinc finger protein 2 2
MIRT694105 ZNF446 zinc finger protein 446 2 2
MIRT694179 ZNF486 zinc finger protein 486 2 2
MIRT694475 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT694998 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT695031 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT695163 TCTN2 tectonic family member 2 2 2
MIRT695525 SLC25A34 solute carrier family 25 member 34 2 2
MIRT696067 ZNF264 zinc finger protein 264 2 2
MIRT696616 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT696661 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696705 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT697173 INMT indolethylamine N-methyltransferase 2 2
MIRT697303 ZNF652 zinc finger protein 652 2 2
MIRT697491 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT698657 TERF2 telomeric repeat binding factor 2 2 2
MIRT699042 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699185 SLX4IP SLX4 interacting protein 2 2
MIRT699598 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT700150 RNF115 ring finger protein 115 2 2
MIRT700720 PNO1 partner of NOB1 homolog 2 2
MIRT700870 PER2 period circadian clock 2 2 2
MIRT700912 PDXK pyridoxal kinase 2 2
MIRT701095 PAPOLG poly(A) polymerase gamma 2 2
MIRT701194 OTUD3 OTU deubiquitinase 3 2 2
MIRT702203 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT702272 LHX4 LIM homeobox 4 2 3
MIRT703125 GPRC5A G protein-coupled receptor class C group 5 member A 2 2
MIRT703252 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT703262 GNL3L G protein nucleolar 3 like 2 2
MIRT703440 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704321 DCUN1D5 defective in cullin neddylation 1 domain containing 5 2 2
MIRT704393 CTSS cathepsin S 2 2
MIRT704483 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT704880 CCSER2 coiled-coil serine rich protein 2 2 2
MIRT704926 CCDC36 coiled-coil domain containing 36 2 2
MIRT705175 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT706561 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT707048 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT711497 PGD phosphogluconate dehydrogenase 2 2
MIRT716644 EPGN epithelial mitogen 2 2
MIRT720083 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT722288 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT725468 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4433a Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4433a Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-4433a Vincristine 5978 approved resistant cell line (W1)
hsa-mir-4433a Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4433a-3p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Pancreatic Cancer cell line (BxPC-3)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CIS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (mitochondrial RNA)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-4433a-3p Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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