pre-miRNA Information
pre-miRNA hsa-mir-5691   
Genomic Coordinates chr11: 9090312 - 9090379
Description Homo sapiens miR-5691 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-5691
Sequence 9| UUGCUCUGAGCUCCGAGAAAGC |30
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1042238449 3 dbSNP
rs554804494 11 dbSNP
rs1172229307 13 dbSNP
rs112511786 14 dbSNP
Putative Targets

Gene Information
Gene Symbol KLHL7   
Synonyms CISS3, KLHL6, SBBI26
Description kelch like family member 7
Transcript NM_001031710   
Other Transcripts NM_001172428 , NM_018846   
Expression
Putative miRNA Targets on KLHL7
3'UTR of KLHL7
(miRNA target sites are highlighted)
>KLHL7|NM_001031710|3'UTR
   1 AAAATGAGTGGACTTCAGACTCATCAGAGACTCTAAAATATAGCCACCAGTGCTTTGTTCCAGGAGTTTGGTGACAAAGT
  81 TTTGGTTTGGTGTTTTGGTAAAGAAAGTTTCAAGTGAAATGAGGTTCCTATAAAATAGATGTTTCTTTTATATGGATTTC
 161 CTTAATTCAAAGATCATATTTTAGCTGGCCACAAAACCAAGAACATATCTAGCAAGAAAACTTGAAAAAGTATAAGCATT
 241 TGTTAAAAATGTGAATTTCTTGAATGAATTTCACATTTGTAACTATGATTTTGGCAGAATAGAAGATTGGCTCATCAGTG
 321 AAGCGCAGTATCTTAGCTCTAGATTCTATTTTCATGCATCACAGAAGTGCTATACGGTTAGGTCTGTTTGTGCTCAGTCA
 401 AGAACTAAGAAATAGTATGAATTGTAAGTCAAGATGGGCAACTCAGATGGAGCAGCTTAGTCTCACAGTTTGCTTGTCTA
 481 TTTATTTTATTTAGTGCCAAATGTATTCCATTTTAAAAGTAAGCCAGAGTGAGTCAAGGCATATACACACTTTCTCACAA
 561 AACTTCCTAAACAGATTTGGGGGTTTAATATGTCCAACTCCTCATGAAATATATTCAATCCACTTAAATATATTCCATCT
 641 TTTTAACATAAAATGTAAAGCTTAGCACCCATCATTAATTTATGTCTCTGTTTTATCCAGTGGTTAAAAAAGGATTCTGC
 721 CTCTTTAGTCCTCACTGTTAAATAAAACCCAATCATAGTAAGTGATTAACTAGCAAAAAGTAAAGCTATTTATAGCAAAT
 801 TTCTAGATCATTAGAAAAGCACTGGTAGTTGTACAATATCAGTGTTGACTTTGAACTTCTTTAACGAGATCATGAATTCT
 881 TTTCCCTTAGCCAAAACATGAAATATTTAACCTAGTTGTCTCTAAAAGTTTTGTAATCATGAGTTAGATATATGTCATCT
 961 CCTATTCATTGCTTTTATGTGATCAATAAATCTTTTACAAACCCAACTACTCATTTCCTTCCTAGTAATACTTTGCCTTT
1041 TTCACTGTGTATGGAATGAAACATGTAAAGCTGTCACAATCAATGTTTTTATCTGATAATATTAAATATTTTTTAACTTA
1121 AAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cgaaaGAGCCUCGAGUCUCGUu 5'
               ||| ||   ::||||| 
Target 5' ggcaaCTCAGA---TGGAGCAg 3'
437 - 455 118.00 -9.90
2
miRNA  3' cgaaagagccUCGAGUCUCGUu 5'
                    ||| |||||:: 
Target 5' tttaaaagtaAGC-CAGAGTGa 3'
512 - 532 115.00 -9.30
3
miRNA  3' cgaaaGAGCCUCG--AGUCUCguu 5'
               :|| || :  ||||||   
Target 5' tggacTTCAGACTCATCAGAGact 3'
9 - 32 111.00 -10.33
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
359802 8 ClinVar
908274 25 ClinVar
359803 36 ClinVar
908275 37 ClinVar
359804 99 ClinVar
359805 202 ClinVar
359806 233 ClinVar
359807 326 ClinVar
359808 377 ClinVar
359809 378 ClinVar
910215 393 ClinVar
910216 472 ClinVar
910217 731 ClinVar
359810 763 ClinVar
359811 780 ClinVar
359812 796 ClinVar
910218 810 ClinVar
359813 866 ClinVar
359814 899 ClinVar
359815 914 ClinVar
359816 972 ClinVar
359817 1053 ClinVar
359818 1124 ClinVar
COSN30143293 11 COSMIC
COSN32061835 24 COSMIC
COSN32065848 36 COSMIC
COSN8516278 86 COSMIC
COSN508932 98 COSMIC
COSN30101439 120 COSMIC
COSN18719339 133 COSMIC
COSN30134064 146 COSMIC
COSN30120794 202 COSMIC
COSN31486997 288 COSMIC
COSN9939843 337 COSMIC
COSN26553171 393 COSMIC
COSN20231537 502 COSMIC
COSN31553300 505 COSMIC
COSN30544407 509 COSMIC
COSN31591316 578 COSMIC
COSN28466017 1332 COSMIC
COSN20154148 1424 COSMIC
COSN23908527 1709 COSMIC
COSN20510565 1807 COSMIC
COSN21932880 2103 COSMIC
COSN20713165 2330 COSMIC
COSN15973729 2341 COSMIC
COSN24193620 2376 COSMIC
COSN29978693 2395 COSMIC
COSN19391154 2748 COSMIC
COSN26406504 3391 COSMIC
COSN20441577 3417 COSMIC
COSN2216481 3419 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1354049091 2 dbSNP
rs1440104951 6 dbSNP
rs775147548 7 dbSNP
rs112802878 8 dbSNP
rs1396854100 12 dbSNP
rs3217004 17 dbSNP
rs1282431970 19 dbSNP
rs386711237 23 dbSNP
rs371098593 24 dbSNP
rs373590982 25 dbSNP
rs1202516985 30 dbSNP
rs1338836441 30 dbSNP
rs747522726 35 dbSNP
rs2286273 36 dbSNP
rs747687873 37 dbSNP
rs770944108 37 dbSNP
rs777149111 38 dbSNP
rs760048576 39 dbSNP
rs1483673204 41 dbSNP
rs765231931 42 dbSNP
rs1427694702 46 dbSNP
rs1479189565 48 dbSNP
rs752768650 50 dbSNP
rs1419055533 66 dbSNP
rs758530875 68 dbSNP
rs1372433768 73 dbSNP
rs570023025 79 dbSNP
rs1371199122 80 dbSNP
rs751765426 86 dbSNP
rs374804428 90 dbSNP
rs915643834 98 dbSNP
rs183472096 99 dbSNP
rs1438345175 101 dbSNP
rs1275136040 102 dbSNP
rs1338363541 105 dbSNP
rs188346406 107 dbSNP
rs1276200814 110 dbSNP
rs1342218650 113 dbSNP
rs745736216 117 dbSNP
rs756119455 120 dbSNP
rs780202902 121 dbSNP
rs1048505252 129 dbSNP
rs998045656 131 dbSNP
rs1241822393 132 dbSNP
rs1029891016 143 dbSNP
rs1407778098 155 dbSNP
rs534229068 156 dbSNP
rs1190701560 159 dbSNP
rs1390920108 162 dbSNP
rs1355193191 174 dbSNP
rs1424065300 177 dbSNP
rs535539398 179 dbSNP
rs1388474084 183 dbSNP
rs1406963841 185 dbSNP
rs954184562 191 dbSNP
rs781156603 193 dbSNP
rs985504221 195 dbSNP
rs774015399 198 dbSNP
rs1432507866 199 dbSNP
rs781364081 202 dbSNP
rs939892359 205 dbSNP
rs1299335065 206 dbSNP
rs1365371099 212 dbSNP
rs1485943610 218 dbSNP
rs1244600470 222 dbSNP
rs1263098218 228 dbSNP
rs1359094819 231 dbSNP
rs1016931279 232 dbSNP
rs746064376 233 dbSNP
rs886062219 233 dbSNP
rs761576506 235 dbSNP
rs769956760 235 dbSNP
rs1284047529 236 dbSNP
rs747780173 237 dbSNP
rs1210875181 239 dbSNP
rs771270412 240 dbSNP
rs776983982 243 dbSNP
rs759958796 245 dbSNP
rs765720525 248 dbSNP
rs1185509313 257 dbSNP
rs1370205725 270 dbSNP
rs1473747630 273 dbSNP
rs1163726975 280 dbSNP
rs1384040871 283 dbSNP
rs1040965318 287 dbSNP
rs1322215775 293 dbSNP
rs1388927683 294 dbSNP
rs776025545 295 dbSNP
rs1309984695 301 dbSNP
rs996622509 309 dbSNP
rs1341698891 312 dbSNP
rs1028136870 314 dbSNP
rs1279466256 322 dbSNP
rs148600187 325 dbSNP
rs567516489 326 dbSNP
rs1383761849 334 dbSNP
rs1269089825 336 dbSNP
rs1461046884 344 dbSNP
rs1198892605 346 dbSNP
rs1258384796 347 dbSNP
rs1182670094 348 dbSNP
rs770322474 352 dbSNP
rs1263286945 354 dbSNP
rs1188237051 356 dbSNP
rs1411146685 357 dbSNP
rs536890817 358 dbSNP
rs937782327 361 dbSNP
rs1054883384 363 dbSNP
rs1471532476 366 dbSNP
rs1161122212 368 dbSNP
rs966740352 373 dbSNP
rs757427422 376 dbSNP
rs556366574 377 dbSNP
rs142087633 378 dbSNP
rs1396094211 382 dbSNP
rs1328856557 385 dbSNP
rs1349179983 392 dbSNP
rs1230711606 393 dbSNP
rs1316543076 397 dbSNP
rs549095444 402 dbSNP
rs1323219347 403 dbSNP
rs1035255458 406 dbSNP
rs538621754 409 dbSNP
rs1257975279 410 dbSNP
rs959633695 413 dbSNP
rs776123064 416 dbSNP
rs902449654 419 dbSNP
rs1195309998 423 dbSNP
rs1249643679 424 dbSNP
rs1482046985 425 dbSNP
rs1198428754 426 dbSNP
rs749269821 427 dbSNP
rs920773155 431 dbSNP
rs931014699 436 dbSNP
rs1173589066 437 dbSNP
rs763616087 439 dbSNP
rs1029533844 442 dbSNP
rs1167801813 445 dbSNP
rs1421410382 451 dbSNP
rs1477419908 454 dbSNP
rs754464220 456 dbSNP
rs778301714 461 dbSNP
rs1368105153 463 dbSNP
rs1412256294 464 dbSNP
rs768616761 472 dbSNP
rs939695474 481 dbSNP
rs1041137840 483 dbSNP
rs1345344445 489 dbSNP
rs1385454197 494 dbSNP
rs1303781317 495 dbSNP
rs901080832 497 dbSNP
rs1268029041 502 dbSNP
rs932591136 503 dbSNP
rs1373780503 511 dbSNP
rs1225497989 525 dbSNP
rs972727689 532 dbSNP
rs1272615081 536 dbSNP
rs559002739 539 dbSNP
rs774496576 544 dbSNP
rs1207269081 559 dbSNP
rs1011371792 564 dbSNP
rs577964616 566 dbSNP
rs982097096 567 dbSNP
rs771617414 568 dbSNP
rs1269127612 569 dbSNP
rs1433430970 570 dbSNP
rs540531789 572 dbSNP
rs1187495828 580 dbSNP
rs1387823255 583 dbSNP
rs151167348 591 dbSNP
rs1169859862 592 dbSNP
rs573867633 596 dbSNP
rs902623650 600 dbSNP
rs1349817833 602 dbSNP
rs761889425 604 dbSNP
rs1296902533 607 dbSNP
rs1035035415 612 dbSNP
rs1295677706 613 dbSNP
rs1368701193 614 dbSNP
rs372747095 618 dbSNP
rs772907354 619 dbSNP
rs1295649901 624 dbSNP
rs1367513253 629 dbSNP
rs542838364 635 dbSNP
rs1420715217 642 dbSNP
rs1314390126 650 dbSNP
rs1321061073 651 dbSNP
rs1248147088 658 dbSNP
rs1219220931 670 dbSNP
rs771994081 674 dbSNP
rs927527927 685 dbSNP
rs1488665099 687 dbSNP
rs1207765769 695 dbSNP
rs959582051 696 dbSNP
rs937500759 698 dbSNP
rs990286033 699 dbSNP
rs1412386213 702 dbSNP
rs991077615 704 dbSNP
rs1167492487 705 dbSNP
rs1350881650 706 dbSNP
rs769380308 728 dbSNP
rs1337940192 731 dbSNP
rs141265321 731 dbSNP
rs1305275054 733 dbSNP
rs1260682937 736 dbSNP
rs1487833994 753 dbSNP
rs1187089638 754 dbSNP
rs775931787 759 dbSNP
rs531449074 763 dbSNP
rs1436014791 767 dbSNP
rs706013 780 dbSNP
rs1196787607 781 dbSNP
rs908273668 789 dbSNP
rs939790790 793 dbSNP
rs534737488 796 dbSNP
rs1226574541 805 dbSNP
rs1314740850 810 dbSNP
rs933963993 811 dbSNP
rs1361897971 835 dbSNP
rs1227564667 837 dbSNP
rs1265950428 842 dbSNP
rs1465994436 845 dbSNP
rs1243984269 846 dbSNP
rs145532402 848 dbSNP
rs760436857 850 dbSNP
rs766218739 858 dbSNP
rs1453467781 862 dbSNP
rs193202664 866 dbSNP
rs1184170777 867 dbSNP
rs1415153798 869 dbSNP
rs946555724 871 dbSNP
rs1239881778 873 dbSNP
rs1384587364 874 dbSNP
rs1301986088 880 dbSNP
rs1383910120 887 dbSNP
rs557309443 899 dbSNP
rs1414581050 901 dbSNP
rs1236122628 902 dbSNP
rs567651709 911 dbSNP
rs1450005820 913 dbSNP
rs886062220 914 dbSNP
rs1457993509 924 dbSNP
rs536424020 926 dbSNP
rs767834555 933 dbSNP
rs1333713482 948 dbSNP
rs1318381403 950 dbSNP
rs1357546290 952 dbSNP
rs1450277121 958 dbSNP
rs550365712 962 dbSNP
rs994648641 971 dbSNP
rs78612254 972 dbSNP
rs1056444214 976 dbSNP
rs1216194960 978 dbSNP
rs1286265128 982 dbSNP
rs1330911824 983 dbSNP
rs1349899222 987 dbSNP
rs971806405 990 dbSNP
rs1002841726 998 dbSNP
rs895149097 1003 dbSNP
rs1035027061 1005 dbSNP
rs1487431750 1008 dbSNP
rs1260276124 1011 dbSNP
rs1224044285 1016 dbSNP
rs1012292679 1025 dbSNP
rs760505756 1027 dbSNP
rs1294362328 1031 dbSNP
rs1309999807 1032 dbSNP
rs185469898 1035 dbSNP
rs1252528844 1037 dbSNP
rs1237495935 1038 dbSNP
rs1195784515 1039 dbSNP
rs1483027440 1046 dbSNP
rs1180599596 1048 dbSNP
rs147712413 1052 dbSNP
rs572464135 1053 dbSNP
rs1297570078 1059 dbSNP
rs978244099 1063 dbSNP
rs1423317475 1069 dbSNP
rs923675382 1071 dbSNP
rs1161463404 1072 dbSNP
rs1176917383 1077 dbSNP
rs754945553 1078 dbSNP
rs961125237 1079 dbSNP
rs1413349070 1080 dbSNP
rs764592326 1084 dbSNP
rs1306083504 1096 dbSNP
rs1352167147 1101 dbSNP
rs1442658782 1105 dbSNP
rs1273960451 1109 dbSNP
rs922234251 1110 dbSNP
rs754877907 1112 dbSNP
rs1050754621 1118 dbSNP
rs1280455900 1121 dbSNP
rs752275483 1124 dbSNP
rs1203692973 1129 dbSNP
rs557991237 1132 dbSNP
rs1038197436 1138 dbSNP
rs757974189 1140 dbSNP
rs1451328280 1143 dbSNP
rs1198617748 1144 dbSNP
rs1245300342 1151 dbSNP
rs777372742 1163 dbSNP
rs915142284 1186 dbSNP
rs142553653 1189 dbSNP
rs993975005 1190 dbSNP
rs1361847599 1213 dbSNP
rs1042192613 1214 dbSNP
rs923777952 1225 dbSNP
rs1216326043 1226 dbSNP
rs6947347 1227 dbSNP
rs542421287 1240 dbSNP
rs777537180 1255 dbSNP
rs1202599214 1269 dbSNP
rs145415994 1271 dbSNP
rs1448462374 1274 dbSNP
rs774346279 1283 dbSNP
rs1411835468 1285 dbSNP
rs958971920 1286 dbSNP
rs1474369247 1288 dbSNP
rs78672325 1290 dbSNP
rs1012241807 1292 dbSNP
rs191302049 1296 dbSNP
rs1431476555 1298 dbSNP
rs746708075 1303 dbSNP
rs1480903553 1306 dbSNP
rs1477941408 1309 dbSNP
rs1175887006 1311 dbSNP
rs1021842111 1317 dbSNP
rs113982967 1318 dbSNP
rs888013092 1319 dbSNP
rs1319381782 1329 dbSNP
rs1031181597 1333 dbSNP
rs1324996155 1347 dbSNP
rs1281364080 1352 dbSNP
rs1005559349 1353 dbSNP
rs986897182 1359 dbSNP
rs1281050266 1361 dbSNP
rs1439693182 1363 dbSNP
rs1284687283 1369 dbSNP
rs150258741 1370 dbSNP
rs966615432 1372 dbSNP
rs1408374843 1373 dbSNP
rs527276926 1380 dbSNP
rs540653767 1381 dbSNP
rs1414374228 1383 dbSNP
rs1249550004 1389 dbSNP
rs997681247 1401 dbSNP
rs1179346873 1402 dbSNP
rs1237195633 1411 dbSNP
rs1183805241 1423 dbSNP
rs561213213 1428 dbSNP
rs1253708858 1429 dbSNP
rs1209394421 1452 dbSNP
rs1029361848 1453 dbSNP
rs1286211112 1456 dbSNP
rs1221865542 1462 dbSNP
rs1205545226 1465 dbSNP
rs953818588 1466 dbSNP
rs6947801 1470 dbSNP
rs1453654555 1474 dbSNP
rs1046867868 1479 dbSNP
rs148926210 1481 dbSNP
rs1490517602 1484 dbSNP
rs1346308563 1485 dbSNP
rs35212372 1488 dbSNP
rs188500742 1489 dbSNP
rs1055836979 1492 dbSNP
rs111918619 1493 dbSNP
rs1446060263 1500 dbSNP
rs1407668261 1501 dbSNP
rs1180805849 1505 dbSNP
rs1485870949 1511 dbSNP
rs894476804 1528 dbSNP
rs923918566 1535 dbSNP
rs1011545107 1552 dbSNP
rs1418415981 1555 dbSNP
rs1247058093 1559 dbSNP
rs866661799 1563 dbSNP
rs858259 1588 dbSNP
rs1310759489 1594 dbSNP
rs858258 1595 dbSNP
rs1362731431 1604 dbSNP
rs858257 1612 dbSNP
rs1398659098 1613 dbSNP
rs1049030463 1615 dbSNP
rs1304154597 1621 dbSNP
rs887784284 1621 dbSNP
rs1403871918 1622 dbSNP
rs566208128 1628 dbSNP
rs1163563539 1630 dbSNP
rs1320980160 1631 dbSNP
rs1428655889 1648 dbSNP
rs1037021296 1650 dbSNP
rs1239256801 1653 dbSNP
rs1484566638 1655 dbSNP
rs1487911067 1655 dbSNP
rs1167929230 1656 dbSNP
rs1195139886 1656 dbSNP
rs1201477941 1656 dbSNP
rs1209531620 1656 dbSNP
rs1266406882 1656 dbSNP
rs1355830301 1656 dbSNP
rs1429198499 1656 dbSNP
rs1429939369 1656 dbSNP
rs1431271313 1656 dbSNP
rs1462173938 1656 dbSNP
rs1477168831 1656 dbSNP
rs1481090631 1656 dbSNP
rs1487347587 1656 dbSNP
rs57658434 1656 dbSNP
rs1260163755 1657 dbSNP
rs1351148101 1668 dbSNP
rs902128883 1668 dbSNP
rs1264358693 1669 dbSNP
rs534991800 1670 dbSNP
rs997619438 1671 dbSNP
rs1300999117 1676 dbSNP
rs1392266607 1677 dbSNP
rs1378656626 1681 dbSNP
rs766532594 1681 dbSNP
rs866668363 1682 dbSNP
rs1178585726 1683 dbSNP
rs753979829 1683 dbSNP
rs555015985 1687 dbSNP
rs1006601306 1692 dbSNP
rs1182264936 1712 dbSNP
rs1420613982 1716 dbSNP
rs858256 1720 dbSNP
rs1457401420 1721 dbSNP
rs986506900 1731 dbSNP
rs1202762580 1743 dbSNP
rs968114524 1756 dbSNP
rs977818552 1757 dbSNP
rs1438296133 1761 dbSNP
rs1031322135 1765 dbSNP
rs1240242884 1770 dbSNP
rs6972117 1772 dbSNP
rs991968395 1777 dbSNP
rs556229642 1786 dbSNP
rs1386454007 1790 dbSNP
rs916431887 1796 dbSNP
rs1424561829 1797 dbSNP
rs1160976102 1798 dbSNP
rs779239877 1801 dbSNP
rs181313696 1807 dbSNP
rs79399508 1808 dbSNP
rs1378216914 1809 dbSNP
rs1157153647 1821 dbSNP
rs1327697096 1821 dbSNP
rs1439302775 1828 dbSNP
rs909339956 1830 dbSNP
rs1189709519 1832 dbSNP
rs940682286 1832 dbSNP
rs1315431826 1833 dbSNP
rs983050259 1833 dbSNP
rs1358699699 1838 dbSNP
rs1489515581 1839 dbSNP
rs1242453465 1842 dbSNP
rs1036395595 1846 dbSNP
rs928478832 1847 dbSNP
rs902077538 1851 dbSNP
rs1359717743 1852 dbSNP
rs113671856 1865 dbSNP
rs1242010920 1870 dbSNP
rs1050518915 1877 dbSNP
rs1055892757 1884 dbSNP
rs1401761373 1899 dbSNP
rs78197090 1910 dbSNP
rs947382784 1913 dbSNP
rs540583502 1914 dbSNP
rs903458653 1918 dbSNP
rs1257745992 1919 dbSNP
rs999105752 1921 dbSNP
rs760953982 1924 dbSNP
rs560943053 1929 dbSNP
rs1030953132 1932 dbSNP
rs890628534 1933 dbSNP
rs1194597115 1936 dbSNP
rs1489566163 1942 dbSNP
rs1261576023 1960 dbSNP
rs1216385919 1966 dbSNP
rs142831026 1975 dbSNP
rs1291642586 1979 dbSNP
rs1017991103 1982 dbSNP
rs189968045 1986 dbSNP
rs903629974 1993 dbSNP
rs999579244 1994 dbSNP
rs1219871050 1995 dbSNP
rs1338340521 1996 dbSNP
rs1030685194 1998 dbSNP
rs1277438214 2014 dbSNP
rs960585121 2016 dbSNP
rs146095292 2017 dbSNP
rs1423778531 2021 dbSNP
rs1405350357 2044 dbSNP
rs532719740 2045 dbSNP
rs1023434392 2055 dbSNP
rs1462101860 2056 dbSNP
rs969209607 2062 dbSNP
rs984677219 2063 dbSNP
rs909278489 2068 dbSNP
rs182078420 2070 dbSNP
rs1422137881 2071 dbSNP
rs962168171 2072 dbSNP
rs972443670 2079 dbSNP
rs923280490 2081 dbSNP
rs1248815363 2090 dbSNP
rs1397719673 2093 dbSNP
rs1450698100 2105 dbSNP
rs959870340 2112 dbSNP
rs566142271 2132 dbSNP
rs1470737067 2133 dbSNP
rs933533608 2137 dbSNP
rs528603075 2142 dbSNP
rs1315469661 2143 dbSNP
rs372549843 2160 dbSNP
rs910838043 2175 dbSNP
rs1224047321 2176 dbSNP
rs1369541365 2179 dbSNP
rs916016733 2181 dbSNP
rs1435412715 2183 dbSNP
rs947529360 2184 dbSNP
rs766095158 2187 dbSNP
rs1043110525 2190 dbSNP
rs1043254560 2204 dbSNP
rs1398164426 2205 dbSNP
rs1170679522 2215 dbSNP
rs34101280 2215 dbSNP
rs1415532378 2220 dbSNP
rs377423965 2221 dbSNP
rs924629651 2223 dbSNP
rs1189842383 2224 dbSNP
rs1477880339 2226 dbSNP
rs934948051 2227 dbSNP
rs1180094709 2231 dbSNP
rs1297712026 2232 dbSNP
rs73275821 2233 dbSNP
rs890672280 2238 dbSNP
rs1203687267 2242 dbSNP
rs759345049 2247 dbSNP
rs1228295348 2252 dbSNP
rs1277621649 2262 dbSNP
rs1316321154 2266 dbSNP
rs1218454577 2269 dbSNP
rs12534183 2278 dbSNP
rs1310316586 2279 dbSNP
rs1205766570 2280 dbSNP
rs999296705 2285 dbSNP
rs1264145173 2298 dbSNP
rs1374840926 2304 dbSNP
rs1483095077 2316 dbSNP
rs1052067797 2318 dbSNP
rs1007697688 2319 dbSNP
rs896158171 2326 dbSNP
rs1174513316 2347 dbSNP
rs1039158424 2356 dbSNP
rs1429591979 2359 dbSNP
rs1192357179 2360 dbSNP
rs1420768199 2362 dbSNP
rs562949072 2367 dbSNP
rs1437454165 2374 dbSNP
rs899620630 2375 dbSNP
rs1181971528 2377 dbSNP
rs1299396709 2377 dbSNP
rs1308747262 2377 dbSNP
rs1351786633 2377 dbSNP
rs1483919261 2377 dbSNP
rs527937264 2377 dbSNP
rs559389219 2377 dbSNP
rs995209323 2378 dbSNP
rs1176635059 2383 dbSNP
rs1013299429 2393 dbSNP
rs77589396 2394 dbSNP
rs1027105243 2396 dbSNP
rs1023550554 2403 dbSNP
rs969324855 2405 dbSNP
rs1300444219 2408 dbSNP
rs1290385396 2413 dbSNP
rs1006450879 2414 dbSNP
rs371162921 2415 dbSNP
rs187123189 2418 dbSNP
rs1297695766 2421 dbSNP
rs959921180 2424 dbSNP
rs1265158760 2426 dbSNP
rs1214218090 2432 dbSNP
rs972175710 2433 dbSNP
rs991344533 2434 dbSNP
rs190950823 2436 dbSNP
rs1222539174 2438 dbSNP
rs556406826 2442 dbSNP
rs1310684037 2443 dbSNP
rs986122499 2447 dbSNP
rs180737792 2448 dbSNP
rs900102200 2451 dbSNP
rs1231582909 2463 dbSNP
rs978867669 2464 dbSNP
rs1262838101 2466 dbSNP
rs185084567 2471 dbSNP
rs1216469551 2472 dbSNP
rs1293821681 2475 dbSNP
rs1459111172 2479 dbSNP
rs1347694219 2493 dbSNP
rs1163467287 2496 dbSNP
rs1465652386 2502 dbSNP
rs934691654 2504 dbSNP
rs545031046 2505 dbSNP
rs747575244 2505 dbSNP
rs1490714792 2506 dbSNP
rs1267781204 2510 dbSNP
rs1192049334 2515 dbSNP
rs1489593585 2519 dbSNP
rs1199508838 2526 dbSNP
rs1424084173 2534 dbSNP
rs1431078060 2537 dbSNP
rs924812686 2538 dbSNP
rs1364123306 2543 dbSNP
rs558340465 2544 dbSNP
rs1260593285 2546 dbSNP
rs1217333035 2547 dbSNP
rs1326271467 2554 dbSNP
rs935037278 2557 dbSNP
rs1367352578 2561 dbSNP
rs1052182463 2567 dbSNP
rs896272735 2570 dbSNP
rs1292531097 2571 dbSNP
rs1446942126 2572 dbSNP
rs1401798077 2573 dbSNP
rs1168527683 2576 dbSNP
rs1465023093 2579 dbSNP
rs899337435 2582 dbSNP
rs1178007071 2590 dbSNP
rs1367229726 2592 dbSNP
rs1431187552 2602 dbSNP
rs1013247133 2612 dbSNP
rs1044778913 2613 dbSNP
rs1048149786 2615 dbSNP
rs905077763 2616 dbSNP
rs1240090013 2626 dbSNP
rs564984542 2628 dbSNP
rs1016469830 2632 dbSNP
rs571761967 2633 dbSNP
rs961900774 2634 dbSNP
rs1310784010 2640 dbSNP
rs137977936 2641 dbSNP
rs1447051938 2643 dbSNP
rs1222649354 2646 dbSNP
rs1378545005 2655 dbSNP
rs115296310 2659 dbSNP
rs954815868 2665 dbSNP
rs1487321282 2679 dbSNP
rs986070204 2685 dbSNP
rs1178510667 2686 dbSNP
rs1250993191 2688 dbSNP
rs1402852707 2692 dbSNP
rs1304494917 2700 dbSNP
rs530855773 2708 dbSNP
rs1017572686 2711 dbSNP
rs969343380 2715 dbSNP
rs1156605169 2716 dbSNP
rs1387050771 2718 dbSNP
rs979040796 2726 dbSNP
rs1165598779 2730 dbSNP
rs868808577 2733 dbSNP
rs751256331 2744 dbSNP
rs1176887520 2745 dbSNP
rs1349331563 2747 dbSNP
rs756977979 2748 dbSNP
rs934839121 2757 dbSNP
rs1022847105 2759 dbSNP
rs1482516909 2763 dbSNP
rs968543626 2769 dbSNP
rs993027054 2769 dbSNP
rs373547099 2770 dbSNP
rs1347005064 2773 dbSNP
rs1237770010 2776 dbSNP
rs1340520046 2779 dbSNP
rs858255 2789 dbSNP
rs1394205208 2790 dbSNP
rs1374713925 2794 dbSNP
rs1385649036 2796 dbSNP
rs1421246076 2797 dbSNP
rs1044716373 2799 dbSNP
rs1157058870 2800 dbSNP
rs956298090 2801 dbSNP
rs987516569 2812 dbSNP
rs911884376 2816 dbSNP
rs943662189 2832 dbSNP
rs904857512 2844 dbSNP
rs974966667 2845 dbSNP
rs1217840386 2847 dbSNP
rs1489464196 2850 dbSNP
rs920811876 2860 dbSNP
rs761656991 2867 dbSNP
rs1288536806 2871 dbSNP
rs1204186250 2878 dbSNP
rs563983299 2878 dbSNP
rs1356509022 2879 dbSNP
rs1285463363 2882 dbSNP
rs1241905894 2906 dbSNP
rs189942122 2907 dbSNP
rs1354774426 2910 dbSNP
rs1278707461 2911 dbSNP
rs1037614738 2929 dbSNP
rs549397391 2931 dbSNP
rs1338111038 2933 dbSNP
rs897764676 2933 dbSNP
rs1400322130 2945 dbSNP
rs1251594392 2947 dbSNP
rs1434842077 2950 dbSNP
rs1457014333 2962 dbSNP
rs1459899319 2964 dbSNP
rs1176591740 2966 dbSNP
rs1244693880 3013 dbSNP
rs546376314 3017 dbSNP
rs1261464211 3020 dbSNP
rs1445197068 3021 dbSNP
rs1451827867 3025 dbSNP
rs141737853 3030 dbSNP
rs890511679 3032 dbSNP
rs1413180484 3040 dbSNP
rs1007606483 3042 dbSNP
rs1333497160 3052 dbSNP
rs886886283 3053 dbSNP
rs1220386010 3056 dbSNP
rs1315895102 3066 dbSNP
rs1269388066 3075 dbSNP
rs1436847021 3078 dbSNP
rs779448967 3084 dbSNP
rs1331929944 3087 dbSNP
rs1325751912 3101 dbSNP
rs939753259 3104 dbSNP
rs1056835352 3105 dbSNP
rs895483848 3112 dbSNP
rs1401364111 3114 dbSNP
rs968746798 3115 dbSNP
rs528740836 3138 dbSNP
rs369356090 3139 dbSNP
rs1467658020 3141 dbSNP
rs548652120 3144 dbSNP
rs979205943 3145 dbSNP
rs1031911834 3148 dbSNP
rs1022898010 3153 dbSNP
rs1478531934 3155 dbSNP
rs1248143561 3159 dbSNP
rs1329772482 3162 dbSNP
rs1467693153 3166 dbSNP
rs956515567 3168 dbSNP
rs904415569 3181 dbSNP
rs868149586 3183 dbSNP
rs1315992000 3189 dbSNP
rs1408676230 3190 dbSNP
rs1219641829 3192 dbSNP
rs1346826659 3215 dbSNP
rs1276901836 3224 dbSNP
rs1232359500 3229 dbSNP
rs1449417528 3233 dbSNP
rs1000055619 3234 dbSNP
rs1353294535 3238 dbSNP
rs992974795 3239 dbSNP
rs956180762 3240 dbSNP
rs371633459 3241 dbSNP
rs1018945795 3250 dbSNP
rs964688763 3251 dbSNP
rs1380456360 3259 dbSNP
rs949074448 3265 dbSNP
rs530912004 3266 dbSNP
rs150588904 3271 dbSNP
rs1232275709 3272 dbSNP
rs920864444 3273 dbSNP
rs569898220 3284 dbSNP
rs1443987936 3285 dbSNP
rs858254 3287 dbSNP
rs1209803733 3290 dbSNP
rs1347469941 3290 dbSNP
rs983667429 3291 dbSNP
rs926398158 3295 dbSNP
rs1242468269 3298 dbSNP
rs1316940895 3304 dbSNP
rs1371233911 3304 dbSNP
rs557634071 3313 dbSNP
rs565531107 3315 dbSNP
rs1248884359 3322 dbSNP
rs534540982 3331 dbSNP
rs1311444106 3334 dbSNP
rs1434443963 3335 dbSNP
rs1264774804 3350 dbSNP
rs1160054882 3358 dbSNP
rs939827968 3359 dbSNP
rs139660490 3372 dbSNP
rs1406596090 3377 dbSNP
rs1181881944 3385 dbSNP
rs1473739693 3391 dbSNP
rs117168464 3417 dbSNP
rs929237911 3419 dbSNP
rs1488482749 3422 dbSNP
rs948382763 3423 dbSNP
rs1218205965 3424 dbSNP
rs1315260564 3431 dbSNP
rs1283667754 3433 dbSNP
rs1228891945 3445 dbSNP
rs1382002548 3446 dbSNP
rs1209147678 3447 dbSNP
rs1291921225 3448 dbSNP
rs117550784 3449 dbSNP
rs1341520275 3454 dbSNP
rs1000510739 3459 dbSNP
rs375718152 3459 dbSNP
rs904465299 3459 dbSNP
rs367672857 3460 dbSNP
rs1344174044 3461 dbSNP
rs1164901541 3466 dbSNP
rs1052996350 3470 dbSNP
rs1188383306 3472 dbSNP
rs891626075 3472 dbSNP
rs1187101562 3473 dbSNP
rs1424374931 3476 dbSNP
rs890295558 3483 dbSNP
rs1265043455 3490 dbSNP
rs1184499073 3492 dbSNP
rs1007380294 3494 dbSNP
rs1017684643 3499 dbSNP
rs1241700143 3505 dbSNP
rs904627578 3514 dbSNP
rs1222427341 3516 dbSNP
rs1168726081 3523 dbSNP
rs1000185943 3529 dbSNP
rs149241456 3540 dbSNP
rs1415466466 3547 dbSNP
rs1233199722 3552 dbSNP
rs1319148765 3557 dbSNP
rs1298198424 3559 dbSNP
rs956250560 3589 dbSNP
rs1380847018 3590 dbSNP
rs773284447 3592 dbSNP
rs370113307 3593 dbSNP
rs1438040653 3596 dbSNP
rs1433438510 3609 dbSNP
rs970212793 3610 dbSNP
rs1466087655 3614 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084066. RNA binding protein: AGO2. Condition:CLIP_noemetine_SantaCruzAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084066
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SantaCruzAb
Location of target site ENST00000339077.5 | 3UTR | GCAAGACUAAAAAAAAAAAAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
91 hsa-miR-5691 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT091162 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT242227 TTC9 tetratricopeptide repeat domain 9 2 4
MIRT246192 TXNIP thioredoxin interacting protein 2 2
MIRT251553 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT387267 SOX9 SRY-box 9 2 2
MIRT463486 ZC3H11A zinc finger CCCH-type containing 11A 2 12
MIRT494446 BTG2 BTG anti-proliferation factor 2 2 2
MIRT496478 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT501825 NCOA3 nuclear receptor coactivator 3 2 2
MIRT503072 C6orf120 chromosome 6 open reading frame 120 2 2
MIRT504755 TEP1 telomerase associated protein 1 2 4
MIRT505971 RAB11FIP1 RAB11 family interacting protein 1 2 4
MIRT511868 GOLGA7 golgin A7 2 6
MIRT512900 UBL4A ubiquitin like 4A 2 2
MIRT513048 LYPD6 LY6/PLAUR domain containing 6 2 6
MIRT523772 FAM83D family with sequence similarity 83 member D 2 2
MIRT525126 RPS11 ribosomal protein S11 2 2
MIRT525816 VIMP selenoprotein S 2 10
MIRT531222 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT531729 SLC2A9 solute carrier family 2 member 9 2 2
MIRT536282 LIMA1 LIM domain and actin binding 1 2 2
MIRT537291 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT537724 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT547940 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT554177 SLC35E2B solute carrier family 35 member E2B 2 2
MIRT555015 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT576717 Wars tryptophanyl-tRNA synthetase 2 2
MIRT607484 HEBP2 heme binding protein 2 2 2
MIRT610786 KLK2 kallikrein related peptidase 2 2 2
MIRT611491 ZNF440 zinc finger protein 440 2 2
MIRT613986 DBT dihydrolipoamide branched chain transacylase E2 2 2
MIRT615782 KIAA0319L KIAA0319 like 2 2
MIRT620563 WBSCR27 methyltransferase like 27 2 4
MIRT624157 DGKE diacylglycerol kinase epsilon 2 2
MIRT626088 MKLN1 muskelin 1 2 2
MIRT629481 GSN gelsolin 2 2
MIRT636645 CDK4 cyclin dependent kinase 4 2 2
MIRT638074 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT638442 PLXDC2 plexin domain containing 2 2 2
MIRT641025 KLHL7 kelch like family member 7 2 2
MIRT641539 MOCOS molybdenum cofactor sulfurase 2 2
MIRT643004 ZNF829 zinc finger protein 829 2 2
MIRT643092 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT644979 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT645912 PLXNA3 plexin A3 2 2
MIRT646605 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT648033 FADS6 fatty acid desaturase 6 2 2
MIRT657491 HBEGF heparin binding EGF like growth factor 2 2
MIRT658381 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT659695 CD200 CD200 molecule 2 2
MIRT661276 TEX9 testis expressed 9 2 2
MIRT661348 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT662948 JPH2 junctophilin 2 2 2
MIRT663225 PPY pancreatic polypeptide 2 2
MIRT663280 SPN sialophorin 2 2
MIRT663335 ZNF74 zinc finger protein 74 2 2
MIRT664344 C16orf45 chromosome 16 open reading frame 45 2 2
MIRT664855 TBRG4 transforming growth factor beta regulator 4 2 2
MIRT665484 VPS53 VPS53, GARP complex subunit 2 2
MIRT666428 SH2B3 SH2B adaptor protein 3 2 2
MIRT668162 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT670170 CCDC142 coiled-coil domain containing 142 2 2
MIRT671277 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT672284 GP2 glycoprotein 2 2 2
MIRT672435 RAB10 RAB10, member RAS oncogene family 2 2
MIRT672646 SLC25A16 solute carrier family 25 member 16 2 4
MIRT672760 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT672834 AKR7L aldo-keto reductase family 7 like (gene/pseudogene) 2 2
MIRT672841 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT673080 AK1 adenylate kinase 1 2 2
MIRT673148 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT673323 THAP1 THAP domain containing 1 2 2
MIRT673893 DCTN6 dynactin subunit 6 2 2
MIRT674182 PLEKHM3 pleckstrin homology domain containing M3 2 2
MIRT674607 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT674740 SLC16A1 solute carrier family 16 member 1 2 2
MIRT675140 MOGAT1 monoacylglycerol O-acyltransferase 1 2 4
MIRT675194 NKPD1 NTPase KAP family P-loop domain containing 1 2 2
MIRT675886 SNAP29 synaptosome associated protein 29 2 2
MIRT679163 PSMB2 proteasome subunit beta 2 2 2
MIRT680337 ZNF281 zinc finger protein 281 2 2
MIRT706699 GPR155 G protein-coupled receptor 155 2 2
MIRT706911 THAP6 THAP domain containing 6 2 2
MIRT707880 SLC45A4 solute carrier family 45 member 4 2 2
MIRT709097 SEPT4 septin 4 2 2
MIRT709408 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT710845 FAM210A family with sequence similarity 210 member A 2 2
MIRT711358 VPS8 VPS8, CORVET complex subunit 2 2
MIRT718590 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT723649 RPTN repetin 2 2
MIRT724208 NUP205 nucleoporin 205 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-5691 Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)

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