pre-miRNA Information
pre-miRNA hsa-mir-6509   
Genomic Coordinates chr7: 135206994 - 135207078
Description Homo sapiens miR-6509 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6509-3p
Sequence 52| UUCCACUGCCACUACCUAAUUU |73
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs778601614 1 dbSNP
rs754554776 3 dbSNP
rs767798995 3 dbSNP
rs145322812 4 dbSNP
rs773941257 5 dbSNP
rs768273593 9 dbSNP
rs984565062 12 dbSNP
rs748872915 13 dbSNP
rs774861125 14 dbSNP
rs13241975 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol B4GALNT3   
Synonyms -
Description beta-1,4-N-acetyl-galactosaminyltransferase 3
Transcript NM_173593   
Expression
Putative miRNA Targets on B4GALNT3
3'UTR of B4GALNT3
(miRNA target sites are highlighted)
>B4GALNT3|NM_173593|3'UTR
   1 CCGGAGGGTGTCCGCGGGGCCCAGCACTCCCCGCTCTGGACTAGCAGTGGCTCCCCAGGGCCCTGCTACTGTTCAGGGAT
  81 GGGGAGTGGGGTGACGGCTGGACCCCAAGAGGCCTCGAAGCTGACGGCCCACTCCACCTGGAGCTGTCCCCTCACAGAGG
 161 CAGGTTCCGGGGCTCCTGTCTCTGCCTCCTGGGCCTTCAGAAGGGAGGACTTTGAGAGAGAGGCCAGGAGGGACCACTTG
 241 CTCAGTCGAGAACGGGAAGAGCTCCTGAGAAGGACGGGTCAGGAAGGAGAGATCTGACTGAGCGACACCATCCTCATCCA
 321 TGAAGGTGCACGCCCACATCCCCCAAGCGCTCCTCACGCCAAGCGCTGACCACCAGACCCTCTTCTAGTGGACATATTTT
 401 ATTGGGGGGCGGGGATTTTAAAAACAGAAAACCGAAACTGC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuuaaucCAUCACCGUCACCuu 5'
                 | | | |||||||  
Target 5' ccgctctGGACTAGCAGTGGct 3'
31 - 52 131.00 -10.90
2
miRNA  3' uuuaauccaucaccGUCACCUu 5'
                        :|||||| 
Target 5' accagaccctcttcTAGTGGAc 3'
372 - 393 124.00 -7.10
3
miRNA  3' uuUAA-UCCAUCACCGUCACCUu 5'
            :|| ||| |  || |||||: 
Target 5' ctGTTCAGGGATGGGGAGTGGGg 3'
69 - 91 116.00 -17.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN19730179 7 COSMIC
COSN13413820 17 COSMIC
COSN30502819 77 COSMIC
COSN30543094 201 COSMIC
COSN18827376 202 COSMIC
COSN21354842 238 COSMIC
COSN17532726 248 COSMIC
COSN28724073 277 COSMIC
COSN30174185 301 COSMIC
COSN6616967 562 COSMIC
COSN21895589 940 COSMIC
COSN31778946 1240 COSMIC
COSN21655460 1262 COSMIC
COSN18004373 1301 COSMIC
COSN19372948 1691 COSMIC
COSN9568367 2037 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs146397999 3 dbSNP
rs200730861 4 dbSNP
rs967470225 8 dbSNP
rs1434753648 9 dbSNP
rs1389015586 13 dbSNP
rs1188493395 14 dbSNP
rs576404403 15 dbSNP
rs540630595 16 dbSNP
rs374378862 17 dbSNP
rs529784514 20 dbSNP
rs770708545 24 dbSNP
rs1239084458 26 dbSNP
rs1040374972 27 dbSNP
rs1208844518 28 dbSNP
rs1360574976 30 dbSNP
rs1211551792 32 dbSNP
rs759827327 33 dbSNP
rs375911503 34 dbSNP
rs1378192629 38 dbSNP
rs767127292 42 dbSNP
rs752718875 44 dbSNP
rs1351472753 46 dbSNP
rs760505906 50 dbSNP
rs1285475647 51 dbSNP
rs2535408 55 dbSNP
rs886174468 57 dbSNP
rs1193488076 58 dbSNP
rs1226911735 61 dbSNP
rs1381834953 62 dbSNP
rs1285232002 63 dbSNP
rs531841840 65 dbSNP
rs1004655927 67 dbSNP
rs1381020210 68 dbSNP
rs1037346159 72 dbSNP
rs898844471 77 dbSNP
rs1441571834 81 dbSNP
rs1001424076 85 dbSNP
rs1034681826 95 dbSNP
rs1010043181 96 dbSNP
rs550462354 97 dbSNP
rs979747103 98 dbSNP
rs1249573767 101 dbSNP
rs1207348277 107 dbSNP
rs1452847559 109 dbSNP
rs1265041258 114 dbSNP
rs1014496586 117 dbSNP
rs571991845 118 dbSNP
rs1294277309 121 dbSNP
rs538986540 126 dbSNP
rs111717039 127 dbSNP
rs1325071875 130 dbSNP
rs925928490 133 dbSNP
rs986979929 135 dbSNP
rs1292516474 138 dbSNP
rs1377035598 143 dbSNP
rs912709362 150 dbSNP
rs964400116 154 dbSNP
rs975654624 162 dbSNP
rs1304478995 164 dbSNP
rs1165380255 165 dbSNP
rs565989075 169 dbSNP
rs182176424 170 dbSNP
rs930303427 171 dbSNP
rs1266776182 190 dbSNP
rs34798889 192 dbSNP
rs1489585523 193 dbSNP
rs905129195 205 dbSNP
rs1213645567 206 dbSNP
rs1239274375 215 dbSNP
rs1047653993 219 dbSNP
rs1327555511 221 dbSNP
rs937901297 225 dbSNP
rs1056246637 236 dbSNP
rs755711688 238 dbSNP
rs770654147 245 dbSNP
rs867901527 248 dbSNP
rs569798234 249 dbSNP
rs1384643642 251 dbSNP
rs536871849 253 dbSNP
rs1424610949 254 dbSNP
rs73594206 255 dbSNP
rs186670564 259 dbSNP
rs1386185075 271 dbSNP
rs1160167496 276 dbSNP
rs56150479 277 dbSNP
rs1377066587 279 dbSNP
rs1174005148 287 dbSNP
rs1164178708 299 dbSNP
rs1055498778 304 dbSNP
rs769669814 305 dbSNP
rs113330493 307 dbSNP
rs114241285 313 dbSNP
rs1371908419 318 dbSNP
rs1483208736 319 dbSNP
rs1254807932 321 dbSNP
rs574375491 322 dbSNP
rs1396267342 325 dbSNP
rs1020052799 326 dbSNP
rs541890429 332 dbSNP
rs774478685 333 dbSNP
rs987031398 340 dbSNP
rs1362654678 343 dbSNP
rs1019822177 344 dbSNP
rs1382638476 349 dbSNP
rs1033061936 350 dbSNP
rs1436584758 352 dbSNP
rs1395800805 358 dbSNP
rs34979622 359 dbSNP
rs1447862607 365 dbSNP
rs533482387 366 dbSNP
rs1029684611 369 dbSNP
rs955788359 371 dbSNP
rs983044046 376 dbSNP
rs908674655 380 dbSNP
rs1202740637 384 dbSNP
rs984437267 388 dbSNP
rs941510865 389 dbSNP
rs974277262 390 dbSNP
rs1203865362 392 dbSNP
rs1339631105 402 dbSNP
rs1227818958 404 dbSNP
rs937955077 404 dbSNP
rs531905745 408 dbSNP
rs1056298250 410 dbSNP
rs937135336 411 dbSNP
rs372732339 412 dbSNP
rs1307462484 414 dbSNP
rs565536034 415 dbSNP
rs903948884 422 dbSNP
rs1190355301 426 dbSNP
rs532853738 434 dbSNP
rs895501563 435 dbSNP
rs1028438143 452 dbSNP
rs548139181 453 dbSNP
rs2535409 454 dbSNP
rs1180810530 457 dbSNP
rs551537796 459 dbSNP
rs999984319 467 dbSNP
rs1032843907 478 dbSNP
rs1353441629 479 dbSNP
rs1481794804 487 dbSNP
rs899904473 488 dbSNP
rs1314370611 494 dbSNP
rs1355317300 495 dbSNP
rs1263432214 499 dbSNP
rs1373215150 500 dbSNP
rs561310985 501 dbSNP
rs1279226114 504 dbSNP
rs1020282374 511 dbSNP
rs1408008643 512 dbSNP
rs1030046740 520 dbSNP
rs191087894 523 dbSNP
rs569524714 524 dbSNP
rs1027127972 525 dbSNP
rs146006362 526 dbSNP
rs1295429402 533 dbSNP
rs1462348144 534 dbSNP
rs750681344 536 dbSNP
rs766805265 537 dbSNP
rs926834667 538 dbSNP
rs148672221 539 dbSNP
rs1450651564 547 dbSNP
rs1485464962 552 dbSNP
rs548913695 553 dbSNP
rs917834041 560 dbSNP
rs12367723 562 dbSNP
rs1226523927 571 dbSNP
rs1352815083 572 dbSNP
rs1042631850 573 dbSNP
rs949725143 575 dbSNP
rs1486698365 576 dbSNP
rs780018908 583 dbSNP
rs925120256 584 dbSNP
rs1041406142 594 dbSNP
rs924525678 596 dbSNP
rs1293592535 606 dbSNP
rs57040950 609 dbSNP
rs1054669668 618 dbSNP
rs1402928406 625 dbSNP
rs12307485 626 dbSNP
rs12311862 627 dbSNP
rs997302971 628 dbSNP
rs1051190451 638 dbSNP
rs1433715955 652 dbSNP
rs1247162111 655 dbSNP
rs183243532 656 dbSNP
rs1448658297 657 dbSNP
rs1347340098 665 dbSNP
rs1004207822 667 dbSNP
rs1015630656 668 dbSNP
rs1305851110 669 dbSNP
rs1235327380 677 dbSNP
rs188678469 688 dbSNP
rs752244915 689 dbSNP
rs994409460 700 dbSNP
rs1346290547 701 dbSNP
rs754992258 704 dbSNP
rs1347174933 708 dbSNP
rs541482980 712 dbSNP
rs888601807 713 dbSNP
rs1392752981 718 dbSNP
rs1175032307 721 dbSNP
rs1286562325 724 dbSNP
rs1448563824 727 dbSNP
rs1389240889 730 dbSNP
rs113499745 731 dbSNP
rs1476279236 732 dbSNP
rs558561268 736 dbSNP
rs959080150 738 dbSNP
rs1484703638 749 dbSNP
rs142159272 750 dbSNP
rs991610873 751 dbSNP
rs916996155 753 dbSNP
rs1195347308 768 dbSNP
rs971157908 771 dbSNP
rs1341716569 774 dbSNP
rs977035364 777 dbSNP
rs1250611226 784 dbSNP
rs1363093026 789 dbSNP
rs575419326 792 dbSNP
rs924306787 800 dbSNP
rs1377843811 802 dbSNP
rs1314175545 804 dbSNP
rs1434864096 806 dbSNP
rs1158817752 818 dbSNP
rs1409662189 824 dbSNP
rs1399378786 825 dbSNP
rs967053050 826 dbSNP
rs1181115497 828 dbSNP
rs56749956 829 dbSNP
rs1054383546 850 dbSNP
rs552951178 851 dbSNP
rs921064701 852 dbSNP
rs1324414001 854 dbSNP
rs932495056 855 dbSNP
rs150756716 856 dbSNP
rs1308356790 860 dbSNP
rs985251052 862 dbSNP
rs1231919704 876 dbSNP
rs1442983407 879 dbSNP
rs911318639 882 dbSNP
rs1281543285 884 dbSNP
rs1294459628 886 dbSNP
rs1414798003 889 dbSNP
rs1349371527 890 dbSNP
rs891199410 896 dbSNP
rs1041462077 901 dbSNP
rs897135940 915 dbSNP
rs930252431 916 dbSNP
rs1163799379 924 dbSNP
rs1459729785 926 dbSNP
rs1419865117 927 dbSNP
rs532789418 929 dbSNP
rs1472280257 930 dbSNP
rs1048634985 938 dbSNP
rs541711218 940 dbSNP
rs1481081356 941 dbSNP
rs1037005877 947 dbSNP
rs1001664093 962 dbSNP
rs898516314 965 dbSNP
rs1034450156 975 dbSNP
rs11063601 984 dbSNP
rs1033942301 987 dbSNP
rs1228343491 988 dbSNP
rs959922365 990 dbSNP
rs556737225 995 dbSNP
rs1025090304 999 dbSNP
rs1392692615 1008 dbSNP
rs1373588066 1017 dbSNP
rs1324815217 1020 dbSNP
rs7977431 1022 dbSNP
rs548304873 1023 dbSNP
rs1326435312 1024 dbSNP
rs1456615167 1028 dbSNP
rs1362062417 1032 dbSNP
rs1161364950 1041 dbSNP
rs977162611 1041 dbSNP
rs1419764430 1044 dbSNP
rs1424645735 1045 dbSNP
rs543903974 1049 dbSNP
rs957908323 1051 dbSNP
rs1208539882 1053 dbSNP
rs1860613 1054 dbSNP
rs756076625 1055 dbSNP
rs990257448 1070 dbSNP
rs1302185527 1080 dbSNP
rs530911462 1091 dbSNP
rs779791275 1095 dbSNP
rs932585463 1096 dbSNP
rs1394366016 1100 dbSNP
rs986638187 1105 dbSNP
rs976852334 1110 dbSNP
rs1290568119 1111 dbSNP
rs1454340986 1115 dbSNP
rs1410658821 1117 dbSNP
rs1358677634 1118 dbSNP
rs552279910 1119 dbSNP
rs1455720903 1120 dbSNP
rs940063551 1121 dbSNP
rs1037120778 1138 dbSNP
rs1188309740 1139 dbSNP
rs1427121826 1143 dbSNP
rs748397468 1160 dbSNP
rs1441763251 1161 dbSNP
rs898463940 1162 dbSNP
rs1278961120 1166 dbSNP
rs1208192792 1168 dbSNP
rs1349587573 1175 dbSNP
rs1303715369 1181 dbSNP
rs1226339171 1183 dbSNP
rs34257023 1184 dbSNP
rs534521814 1186 dbSNP
rs1382691338 1191 dbSNP
rs773453050 1197 dbSNP
rs1311139544 1202 dbSNP
rs1436723756 1204 dbSNP
rs1376230756 1210 dbSNP
rs546844600 1215 dbSNP
rs1055910072 1224 dbSNP
rs568267264 1225 dbSNP
rs747198768 1226 dbSNP
rs1194401309 1228 dbSNP
rs1423709217 1233 dbSNP
rs1013786095 1240 dbSNP
rs1256097331 1243 dbSNP
rs1025067613 1245 dbSNP
rs1196239839 1247 dbSNP
rs1194895104 1260 dbSNP
rs1046143713 1278 dbSNP
rs902695288 1280 dbSNP
rs112245217 1281 dbSNP
rs1031377278 1286 dbSNP
rs1291379422 1292 dbSNP
rs1416624891 1292 dbSNP
rs376219564 1301 dbSNP
rs1356206346 1319 dbSNP
rs957158637 1338 dbSNP
rs566568472 1348 dbSNP
rs1389864621 1350 dbSNP
rs1028436921 1354 dbSNP
rs1476421024 1365 dbSNP
rs1168843588 1379 dbSNP
rs1461263491 1401 dbSNP
rs574707210 1403 dbSNP
rs772383175 1405 dbSNP
rs953959309 1407 dbSNP
rs1475874668 1409 dbSNP
rs1237529420 1419 dbSNP
rs371106401 1420 dbSNP
rs1435715272 1422 dbSNP
rs775966943 1423 dbSNP
rs1333892166 1425 dbSNP
rs1271151699 1429 dbSNP
rs1394444324 1429 dbSNP
rs1335440137 1439 dbSNP
rs1409409996 1445 dbSNP
rs912360276 1451 dbSNP
rs771324056 1452 dbSNP
rs1006794140 1453 dbSNP
rs73594216 1454 dbSNP
rs965236111 1455 dbSNP
rs1328403274 1458 dbSNP
rs977282571 1461 dbSNP
rs920004233 1464 dbSNP
rs1407980798 1468 dbSNP
rs1157467354 1469 dbSNP
rs918683272 1471 dbSNP
rs1339590702 1473 dbSNP
rs951515008 1474 dbSNP
rs1178899180 1477 dbSNP
rs777038702 1479 dbSNP
rs1250879301 1480 dbSNP
rs11063606 1481 dbSNP
rs1336929862 1485 dbSNP
rs577485347 1493 dbSNP
rs192902133 1498 dbSNP
rs1352978501 1500 dbSNP
rs61916657 1502 dbSNP
rs1486444269 1508 dbSNP
rs1233813062 1510 dbSNP
rs1369104091 1519 dbSNP
rs1306081810 1524 dbSNP
rs1442175906 1524 dbSNP
rs28497140 1525 dbSNP
rs999647654 1527 dbSNP
rs77858545 1532 dbSNP
rs902274466 1533 dbSNP
rs999659496 1543 dbSNP
rs892874408 1545 dbSNP
rs1453386486 1552 dbSNP
rs1053473180 1560 dbSNP
rs1011755916 1561 dbSNP
rs1027965635 1564 dbSNP
rs1174326653 1567 dbSNP
rs1213591839 1569 dbSNP
rs563319530 1569 dbSNP
rs185058564 1570 dbSNP
rs1286789960 1573 dbSNP
rs552216534 1575 dbSNP
rs961323327 1578 dbSNP
rs564260306 1582 dbSNP
rs972541223 1583 dbSNP
rs1235392458 1585 dbSNP
rs528225012 1594 dbSNP
rs1025874638 1601 dbSNP
rs1382546264 1614 dbSNP
rs1268882389 1616 dbSNP
rs1433472476 1621 dbSNP
rs1327566026 1626 dbSNP
rs763472929 1633 dbSNP
rs1298267037 1643 dbSNP
rs1433620054 1650 dbSNP
rs1373175498 1665 dbSNP
rs1385565161 1675 dbSNP
rs1175162982 1676 dbSNP
rs952796224 1678 dbSNP
rs763564651 1683 dbSNP
rs1414779477 1691 dbSNP
rs751119914 1700 dbSNP
rs1320268157 1701 dbSNP
rs1324608230 1702 dbSNP
rs1263892889 1709 dbSNP
rs1187241168 1710 dbSNP
rs756891201 1712 dbSNP
rs546487290 1715 dbSNP
rs1484733284 1723 dbSNP
rs916553985 1724 dbSNP
rs984155762 1726 dbSNP
rs1307183676 1727 dbSNP
rs1271279766 1730 dbSNP
rs949408268 1734 dbSNP
rs1052454 1735 dbSNP
rs1349337585 1736 dbSNP
rs141879689 1739 dbSNP
rs1413589111 1740 dbSNP
rs1353049297 1745 dbSNP
rs550887106 1750 dbSNP
rs1314231410 1751 dbSNP
rs9861 1756 dbSNP
rs1353629540 1763 dbSNP
rs1053853900 1777 dbSNP
rs1207237485 1782 dbSNP
rs893984531 1785 dbSNP
rs117461457 1787 dbSNP
rs145689830 1788 dbSNP
rs1259677755 1793 dbSNP
rs1194746033 1794 dbSNP
rs1254987882 1795 dbSNP
rs924756070 1804 dbSNP
rs572986311 1811 dbSNP
rs889576442 1818 dbSNP
rs1007893208 1826 dbSNP
rs1452615510 1835 dbSNP
rs1458520162 1850 dbSNP
rs1273055618 1854 dbSNP
rs1231980121 1866 dbSNP
rs1337641946 1869 dbSNP
rs1019312351 1870 dbSNP
rs533931485 1885 dbSNP
rs1053526229 1888 dbSNP
rs553289413 1894 dbSNP
rs575007369 1895 dbSNP
rs1039354758 1898 dbSNP
rs1325030189 1901 dbSNP
rs901106481 1905 dbSNP
rs1160085439 1913 dbSNP
rs1165550934 1914 dbSNP
rs542141262 1915 dbSNP
rs1434294915 1921 dbSNP
rs990704448 1922 dbSNP
rs773290976 1924 dbSNP
rs1025502894 1926 dbSNP
rs1252733668 1934 dbSNP
rs563652495 1947 dbSNP
rs575203185 1950 dbSNP
rs916651296 1952 dbSNP
rs1300223095 1957 dbSNP
rs145398494 1958 dbSNP
rs1221578303 1962 dbSNP
rs886931027 1968 dbSNP
rs970861503 1970 dbSNP
rs1005631520 1971 dbSNP
rs1241839253 1975 dbSNP
rs1016976522 1979 dbSNP
rs564200196 1991 dbSNP
rs1438511418 1995 dbSNP
rs1214898657 2003 dbSNP
rs1392717142 2007 dbSNP
rs777980879 2009 dbSNP
rs923958293 2017 dbSNP
rs935562398 2026 dbSNP
rs1467238019 2034 dbSNP
rs1161430910 2038 dbSNP
rs1440551693 2046 dbSNP
rs1192080925 2048 dbSNP
rs1268622536 2048 dbSNP
rs57955399 2048 dbSNP
rs796149739 2048 dbSNP
rs865954048 2048 dbSNP
rs991461457 2049 dbSNP
rs1053967271 2050 dbSNP
rs528566935 2055 dbSNP
rs1218246248 2057 dbSNP
rs1353950699 2059 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084066. RNA binding protein: AGO2. Condition:CLIP_noemetine_SantaCruzAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuuaauccaucaccgUCACCUu 5'
                         |||||| 
Target 5' -------aaaagggaAGUGGAa 3'
1 - 15
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000266383.5 | 3UTR | AAAAGGGAAGUGGAAGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084066
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SantaCruzAb
Location of target site ENST00000266383.5 | 3UTR | AAAAGGGAAGUGGAAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
82 hsa-miR-6509-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055374 PDCD4 programmed cell death 4 2 4
MIRT378341 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT444668 CDKL2 cyclin dependent kinase like 2 2 2
MIRT446953 CD248 CD248 molecule 2 2
MIRT460332 CAMK4 calcium/calmodulin dependent protein kinase IV 2 6
MIRT464078 VPS4A vacuolar protein sorting 4 homolog A 2 2
MIRT464586 UBN2 ubinuclein 2 2 2
MIRT468482 SESN3 sestrin 3 2 2
MIRT468962 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT475455 HSPA8 heat shock protein family A (Hsp70) member 8 2 2
MIRT482403 ADRB1 adrenoceptor beta 1 2 10
MIRT486992 ZFAND2B zinc finger AN1-type containing 2B 2 2
MIRT489397 TUBB2A tubulin beta 2A class IIa 2 2
MIRT526319 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526560 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT526732 ZNF138 zinc finger protein 138 2 8
MIRT531581 STXBP5L syntaxin binding protein 5 like 2 2
MIRT532011 NOX5 NADPH oxidase 5 2 2
MIRT533407 TXLNG taxilin gamma 2 2
MIRT533436 TRPC5 transient receptor potential cation channel subfamily C member 5 2 2
MIRT533866 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT539254 ANKRD50 ankyrin repeat domain 50 2 2
MIRT541451 C15orf48 chromosome 15 open reading frame 48 2 2
MIRT566794 MIER3 MIER family member 3 2 2
MIRT569294 SURF6 surfeit 6 2 2
MIRT571336 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT572802 PPP3CB protein phosphatase 3 catalytic subunit beta 2 2
MIRT572813 MYO1C myosin IC 2 2
MIRT574219 DMRT2 doublesex and mab-3 related transcription factor 2 2 2
MIRT607259 GRAMD1B GRAM domain containing 1B 2 4
MIRT609307 CHD4 chromodomain helicase DNA binding protein 4 2 2
MIRT615459 REPS1 RALBP1 associated Eps domain containing 1 2 2
MIRT616861 RPLP1 ribosomal protein lateral stalk subunit P1 2 2
MIRT619415 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT619652 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT625325 TNFRSF13B TNF receptor superfamily member 13B 2 2
MIRT638980 ARFIP2 ADP ribosylation factor interacting protein 2 2 2
MIRT639458 ZNF429 zinc finger protein 429 2 2
MIRT640550 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT641473 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
MIRT642720 ATXN3 ataxin 3 2 2
MIRT643048 SMN1 survival of motor neuron 1, telomeric 2 2
MIRT644921 SMN2 survival of motor neuron 2, centromeric 2 2
MIRT645875 ZNF275 zinc finger protein 275 2 2
MIRT649824 LIPG lipase G, endothelial type 2 2
MIRT649851 GYS2 glycogen synthase 2 2 2
MIRT649972 TRAFD1 TRAF-type zinc finger domain containing 1 2 2
MIRT650675 ZNF259 ZPR1 zinc finger 1 1
MIRT651319 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT652876 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 2
MIRT652881 SYVN1 synoviolin 1 2 2
MIRT654144 RPAP2 RNA polymerase II associated protein 2 2 2
MIRT657080 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT657181 INO80C INO80 complex subunit C 2 2
MIRT657830 GJD3 gap junction protein delta 3 2 2
MIRT657897 GDF7 growth differentiation factor 7 2 2
MIRT659631 CDKN2AIP CDKN2A interacting protein 2 2
MIRT663115 SPTA1 spectrin alpha, erythrocytic 1 2 2
MIRT664739 METTL16 methyltransferase like 16 2 2
MIRT667551 LRAT lecithin retinol acyltransferase 2 2
MIRT668552 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT682893 XIAP X-linked inhibitor of apoptosis 2 2
MIRT683092 PRRG4 proline rich and Gla domain 4 2 2
MIRT683102 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT697648 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT709158 ZNF419 zinc finger protein 419 2 2
MIRT713220 RCAN2 regulator of calcineurin 2 2 2
MIRT713277 LAIR1 leukocyte associated immunoglobulin like receptor 1 2 2
MIRT715008 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 2
MIRT715051 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT715696 PNMAL2 paraneoplastic Ma antigen family member 8B 2 2
MIRT717250 TMEM246 transmembrane protein 246 2 2
MIRT717322 PGK1 phosphoglycerate kinase 1 2 2
MIRT717587 MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like 2 2
MIRT718122 CHST4 carbohydrate sulfotransferase 4 2 2
MIRT718418 CALN1 calneuron 1 2 2
MIRT718750 ZNF490 zinc finger protein 490 2 2
MIRT720048 PPP1R3F protein phosphatase 1 regulatory subunit 3F 2 2
MIRT721497 THRB thyroid hormone receptor beta 2 2
MIRT722531 EPRS glutamyl-prolyl-tRNA synthetase 2 2
MIRT723279 KRTAP21-2 keratin associated protein 21-2 2 2
MIRT724813 MSX2 msh homeobox 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6509-3p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-6509-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6509-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6509-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6509-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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