pre-miRNA Information
pre-miRNA hsa-mir-412   
Genomic Coordinates chr14: 101065447 - 101065537
Synonyms MIRN412, hsa-mir-412, MIR412
Description Homo sapiens miR-412 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-412-3p
Sequence 54| ACUUCACCUGGUCCACUAGCCGU |76
Evidence Not_experimental
Experiments
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
rs61992671 18 GWAS
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs369997462 1 dbSNP
rs1439693090 7 dbSNP
rs1301668924 11 dbSNP
rs534204576 13 dbSNP
rs775386036 14 dbSNP
rs762832140 15 dbSNP
rs1203323285 16 dbSNP
rs61992671 18 dbSNP
rs1022012324 19 dbSNP
rs1207609936 20 dbSNP
rs139967426 21 dbSNP
rs539487075 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol C14orf180   
Synonyms C14orf77, NRAC
Description chromosome 14 open reading frame 180
Transcript NM_001008404   
Expression
Putative miRNA Targets on C14orf180
3'UTR of C14orf180
(miRNA target sites are highlighted)
>C14orf180|NM_001008404|3'UTR
   1 CGGGCAGGACGGGCAGGACGGGCAGGGCTTCCAGGAGAGCTCAAGCACTCCGGGGGCTCCGAGACAGCCTGAGCCCTGGC
  81 CCTGCTGCTTGGTGAATCATGGGGGCCAAAAGGGGCTGCTGCCTGAGGGCTAACTAGGAAAAGGGGGACCCCGTGGCGTG
 161 AGATCGGACATGGGGGGCACAGCAGGCGGCCCCGCCACACTAGTCAGCACAGCCCTCCTGTCTCCTGTGTTGGGTCCATG
 241 TGAGATTTTATTAGAAAGAGGATTCGACTGCTAACAGTTGAGGCTCCCCAGGCTCACCCAAAGACCCCTCCCTCGTCCCA
 321 GCAGGAACTCCTGCTGCTGCTAGGGCCTGGCCCGGCCATCACCGTGTGCACCCTCTTGAGGAGGGGGACACACTGCCCGT
 401 GTTCAAGGGGCTGCTCGGAGGAGGCAAACCCAGCCTTTTGCGATTATGGCTTGTGGGGAATCCAGACCTCGAAACCCCAC
 481 GGGGAGGGAAGGGTCTGGTTGTCAAGGTGGGTCCCTTTGATGTGAGGTGCCATCCTCTGAGCCCAGGTCTGACCCCCCTA
 561 CCCAGCCCCGTGAGTCTGGAGAGGCCCCAGGGAAGGACCCCTCATCAGGGGCGGCTTCAGGTGTAGAAGCCGAGGGGACA
 641 GCAAGGGGCCCAGACACCCCCGACCTTCAGAACAGCCATCTGTGCCCAGCTCTGCAGGCCAGGCACACCCAGCTGAGCCC
 721 GGGGCCAGCCAGCACCACCCACCAGCTGGGGCCTGTGGGTCCCGGAGACCGTCTGTGGTTGTGGCTTTGTCGCCGGATTG
 801 CAGAGCTGAAGGGAGCCCTGTGGATGACAAACACCAGGGGCCTCTCCAGACCCTACGTGGGGGGAGGGCTGAACAAAGCA
 881 GGGAGGCCCACGGTTAGACACCAGGCAGAACTGCCCAGGAGAGACACAGGGACAATCAGACCAGCGTCCTCGAGGTTAGC
 961 CTGAGGCGGGTGGGCACGGCCGACCATCCACCCGGTGGTTCCTGTTTGTCCCACCACTTAACTGGGAGACACTGTTTTAT
1041 TAAAACACACCGTGGCTTCCTTCAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugccGAUCACCUGGUCCACUUca 5'
              ||: ||  |: ||||||  
Target 5' ggccCTGCTG--CTTGGTGAAtc 3'
78 - 98 131.00 -8.40
2
miRNA  3' ugCCGAUCACCUGGUCCACUUCa 5'
            ||| : |   :|||||| || 
Target 5' ggGGCGGCT---TCAGGTGTAGa 3'
608 - 627 122.00 -18.50
3
miRNA  3' ugCCG-AUCA----CCUGG----UCCACUUCa 5'
            ||| | ||    |||::    || ||||| 
Target 5' gtGGCTTTGTCGCCGGATTGCAGAGCTGAAGg 3'
781 - 812 121.00 -15.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN17076817 5 COSMIC
COSN17076818 8 COSMIC
COSN17076819 19 COSMIC
COSN17076820 22 COSMIC
COSN31967249 27 COSMIC
COSN26121450 114 COSMIC
COSN30620221 159 COSMIC
COSN28876956 166 COSMIC
COSN28842942 172 COSMIC
COSN20111748 178 COSMIC
COSN22314366 199 COSMIC
COSN30543412 346 COSMIC
COSN7429702 429 COSMIC
COSN31542852 442 COSMIC
COSN8588014 454 COSMIC
COSN16077939 471 COSMIC
COSN24436281 520 COSMIC
COSN30544729 531 COSMIC
COSN20111750 559 COSMIC
COSN31515236 619 COSMIC
COSN28670948 825 COSMIC
COSN28673226 840 COSMIC
COSN14485366 1369 COSMIC
COSN5206600 1424 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs745869373 1 dbSNP
rs754054962 2 dbSNP
rs1163007586 3 dbSNP
rs758260817 7 dbSNP
rs1379806982 10 dbSNP
rs945338920 11 dbSNP
rs1044020819 12 dbSNP
rs1352495589 15 dbSNP
rs1458537900 15 dbSNP
rs1328502673 16 dbSNP
rs1052404047 19 dbSNP
rs1216839890 19 dbSNP
rs1398668925 19 dbSNP
rs868208487 19 dbSNP
rs925004217 20 dbSNP
rs943024952 21 dbSNP
rs1187294557 24 dbSNP
rs1238553949 28 dbSNP
rs1474092776 29 dbSNP
rs1038678100 38 dbSNP
rs535962711 39 dbSNP
rs1053102782 46 dbSNP
rs1317478150 48 dbSNP
rs78070047 52 dbSNP
rs186046463 53 dbSNP
rs1432556877 55 dbSNP
rs1333336738 57 dbSNP
rs1359656541 60 dbSNP
rs563437480 61 dbSNP
rs544719196 62 dbSNP
rs1423500930 64 dbSNP
rs1375458230 70 dbSNP
rs1165103981 71 dbSNP
rs1017601924 72 dbSNP
rs1240262490 79 dbSNP
rs962955672 80 dbSNP
rs747570680 84 dbSNP
rs1200229475 86 dbSNP
rs1279844615 98 dbSNP
rs1023489210 104 dbSNP
rs1202986331 105 dbSNP
rs1233298131 113 dbSNP
rs1175205864 114 dbSNP
rs1471031118 116 dbSNP
rs1238124241 127 dbSNP
rs1440333009 135 dbSNP
rs564798090 139 dbSNP
rs1393491682 140 dbSNP
rs1274508041 142 dbSNP
rs746638160 147 dbSNP
rs750764905 148 dbSNP
rs879279565 150 dbSNP
rs969220999 151 dbSNP
rs1001994379 153 dbSNP
rs1002169519 154 dbSNP
rs1460475107 157 dbSNP
rs578206651 158 dbSNP
rs1034855735 159 dbSNP
rs1033612777 163 dbSNP
rs982692164 166 dbSNP
rs1338428596 171 dbSNP
rs576777677 171 dbSNP
rs1405191447 172 dbSNP
rs3840008 172 dbSNP
rs796916368 172 dbSNP
rs1344296767 175 dbSNP
rs549018174 176 dbSNP
rs879126429 177 dbSNP
rs973818149 179 dbSNP
rs1408415336 181 dbSNP
rs913766568 184 dbSNP
rs11160811 185 dbSNP
rs1200306302 186 dbSNP
rs979410264 187 dbSNP
rs1240625576 188 dbSNP
rs1218189823 189 dbSNP
rs188900899 192 dbSNP
rs766986068 194 dbSNP
rs534480607 195 dbSNP
rs1326201302 200 dbSNP
rs1256906652 201 dbSNP
rs1223664565 204 dbSNP
rs974417933 210 dbSNP
rs181385441 211 dbSNP
rs374439354 212 dbSNP
rs933080706 213 dbSNP
rs142719723 232 dbSNP
rs887322829 237 dbSNP
rs3803318 240 dbSNP
rs528480531 241 dbSNP
rs1431445890 245 dbSNP
rs1421851005 247 dbSNP
rs893114958 253 dbSNP
rs1428049704 259 dbSNP
rs1012006380 261 dbSNP
rs1188534496 262 dbSNP
rs551533382 264 dbSNP
rs905952002 267 dbSNP
rs571192250 271 dbSNP
rs1178419681 275 dbSNP
rs1357356204 279 dbSNP
rs116265213 302 dbSNP
rs1033666690 315 dbSNP
rs896479916 316 dbSNP
rs1013656150 319 dbSNP
rs1021453334 345 dbSNP
rs1363686203 349 dbSNP
rs966778951 352 dbSNP
rs960551756 354 dbSNP
rs571498829 355 dbSNP
rs1337341016 357 dbSNP
rs1015938596 363 dbSNP
rs962371370 364 dbSNP
rs371881395 365 dbSNP
rs1323545627 372 dbSNP
rs1032146581 376 dbSNP
rs974150401 379 dbSNP
rs964641905 381 dbSNP
rs1446873008 382 dbSNP
rs536961864 384 dbSNP
rs1244077515 386 dbSNP
rs953769179 392 dbSNP
rs1225888875 394 dbSNP
rs550331561 399 dbSNP
rs922960787 400 dbSNP
rs1217011997 408 dbSNP
rs1244157048 411 dbSNP
rs934836307 417 dbSNP
rs375633438 418 dbSNP
rs1269704515 421 dbSNP
rs1390758685 431 dbSNP
rs1371164536 432 dbSNP
rs947701146 433 dbSNP
rs932970995 442 dbSNP
rs983100203 443 dbSNP
rs1161927635 444 dbSNP
rs878896201 454 dbSNP
rs1413806806 456 dbSNP
rs950888342 460 dbSNP
rs907625767 463 dbSNP
rs1386262604 468 dbSNP
rs1181614960 471 dbSNP
rs567124538 472 dbSNP
rs535901365 481 dbSNP
rs1038962454 482 dbSNP
rs1297122108 491 dbSNP
rs186265404 494 dbSNP
rs1024797780 495 dbSNP
rs898405366 497 dbSNP
rs995471382 506 dbSNP
rs938297491 507 dbSNP
rs1272543798 508 dbSNP
rs1431298798 510 dbSNP
rs1314876710 512 dbSNP
rs1367560549 513 dbSNP
rs1391846817 520 dbSNP
rs1345001351 521 dbSNP
rs1055297937 530 dbSNP
rs896528665 533 dbSNP
rs1286801857 545 dbSNP
rs1452149226 553 dbSNP
rs3840007 553 dbSNP
rs1160516541 554 dbSNP
rs191863595 562 dbSNP
rs1428000068 569 dbSNP
rs558475065 570 dbSNP
rs902608896 571 dbSNP
rs1267659097 598 dbSNP
rs576847577 599 dbSNP
rs879168622 600 dbSNP
rs1484783308 610 dbSNP
rs1196897188 613 dbSNP
rs368002095 614 dbSNP
rs1322809029 618 dbSNP
rs1032612690 624 dbSNP
rs964526945 630 dbSNP
rs989389660 632 dbSNP
rs914779196 633 dbSNP
rs576336894 636 dbSNP
rs1387595935 641 dbSNP
rs1030257350 646 dbSNP
rs1289763161 656 dbSNP
rs980401031 658 dbSNP
rs954577450 662 dbSNP
rs1157809855 663 dbSNP
rs983536685 667 dbSNP
rs74088184 670 dbSNP
rs563826752 675 dbSNP
rs574294985 680 dbSNP
rs963483667 682 dbSNP
rs1426298881 685 dbSNP
rs1263392927 694 dbSNP
rs1209195662 699 dbSNP
rs1460679863 703 dbSNP
rs1261231975 719 dbSNP
rs543286131 721 dbSNP
rs559795066 722 dbSNP
rs1225530024 726 dbSNP
rs1328484657 744 dbSNP
rs1298607204 746 dbSNP
rs890528289 753 dbSNP
rs920130546 755 dbSNP
rs1404338275 756 dbSNP
rs938176245 764 dbSNP
rs767483945 765 dbSNP
rs1460021323 768 dbSNP
rs1037265699 769 dbSNP
rs918175135 771 dbSNP
rs866486348 772 dbSNP
rs1240992647 773 dbSNP
rs80252681 778 dbSNP
rs1028264273 779 dbSNP
rs1316131872 780 dbSNP
rs1272192571 784 dbSNP
rs534760758 793 dbSNP
rs551739742 795 dbSNP
rs1001386206 796 dbSNP
rs1381085005 807 dbSNP
rs1289258919 812 dbSNP
rs1438400168 817 dbSNP
rs1053863502 818 dbSNP
rs1449413048 819 dbSNP
rs10083486 825 dbSNP
rs1327400093 828 dbSNP
rs1240005844 829 dbSNP
rs1437720401 835 dbSNP
rs10083489 840 dbSNP
rs74088198 841 dbSNP
rs954629825 855 dbSNP
rs1004785943 856 dbSNP
rs200679665 857 dbSNP
rs1473003831 858 dbSNP
rs963070391 858 dbSNP
rs536034750 860 dbSNP
rs1252581328 867 dbSNP
rs1222032596 880 dbSNP
rs1424677898 882 dbSNP
rs1294201996 892 dbSNP
rs111289865 893 dbSNP
rs958413297 900 dbSNP
rs1398793308 914 dbSNP
rs757576164 915 dbSNP
rs147351225 918 dbSNP
rs1351801644 920 dbSNP
rs1308050985 921 dbSNP
rs1403782341 930 dbSNP
rs1363407076 932 dbSNP
rs73361831 935 dbSNP
rs949691764 942 dbSNP
rs1385363318 945 dbSNP
rs1405794042 945 dbSNP
rs1242884921 946 dbSNP
rs1042631412 947 dbSNP
rs1340300060 952 dbSNP
rs1216448671 953 dbSNP
rs923971201 960 dbSNP
rs1222520157 961 dbSNP
rs1446815783 966 dbSNP
rs936688499 968 dbSNP
rs1053754102 969 dbSNP
rs957696184 972 dbSNP
rs1283194976 975 dbSNP
rs900602413 978 dbSNP
rs74598838 979 dbSNP
rs1294952053 980 dbSNP
rs1436702913 982 dbSNP
rs568874447 983 dbSNP
rs1134959 986 dbSNP
rs1389371027 988 dbSNP
rs1005244997 991 dbSNP
rs1175589846 994 dbSNP
rs141024492 995 dbSNP
rs1191996551 997 dbSNP
rs1475173330 998 dbSNP
rs757984050 1021 dbSNP
rs1172232678 1022 dbSNP
rs940759386 1023 dbSNP
rs201604363 1029 dbSNP
rs1037813797 1033 dbSNP
rs200078706 1033 dbSNP
rs1263121029 1051 dbSNP
rs1202280691 1053 dbSNP
rs1320845092 1060 dbSNP
rs1302680084 1065 dbSNP
rs963583695 1066 dbSNP
rs1360910678 1067 dbSNP
rs1268042593 1076 dbSNP
rs1049641308 1081 dbSNP
rs1177696245 1092 dbSNP
rs1336033264 1098 dbSNP
rs779436845 1103 dbSNP
rs574434468 1104 dbSNP
rs1176950569 1117 dbSNP
rs1409444150 1118 dbSNP
rs543187000 1119 dbSNP
rs12589717 1120 dbSNP
rs1450507764 1123 dbSNP
rs1025126910 1126 dbSNP
rs58541277 1128 dbSNP
rs978790054 1129 dbSNP
rs1484492621 1131 dbSNP
rs1317304961 1136 dbSNP
rs373571402 1137 dbSNP
rs924224365 1138 dbSNP
rs780953590 1143 dbSNP
rs1263743225 1147 dbSNP
rs545172031 1149 dbSNP
rs1335507061 1150 dbSNP
rs117157375 1151 dbSNP
rs921909242 1155 dbSNP
rs530803125 1156 dbSNP
rs1450164259 1163 dbSNP
rs544245543 1169 dbSNP
rs960274287 1170 dbSNP
rs943463817 1173 dbSNP
rs1352791542 1174 dbSNP
rs765361008 1178 dbSNP
rs932082249 1187 dbSNP
rs1170753671 1192 dbSNP
rs907849811 1198 dbSNP
rs769694680 1200 dbSNP
rs1425920027 1201 dbSNP
rs890323068 1204 dbSNP
rs940534945 1210 dbSNP
rs1257535200 1212 dbSNP
rs1260413844 1215 dbSNP
rs1036572976 1230 dbSNP
rs920700235 1239 dbSNP
rs899097312 1241 dbSNP
rs560826859 1242 dbSNP
rs1477246326 1245 dbSNP
rs1034001877 1246 dbSNP
rs1242386562 1247 dbSNP
rs911085856 1250 dbSNP
rs1313379121 1256 dbSNP
rs1223108602 1259 dbSNP
rs943916678 1267 dbSNP
rs1309871752 1269 dbSNP
rs894133681 1273 dbSNP
rs1410504128 1303 dbSNP
rs529971756 1306 dbSNP
rs546738954 1317 dbSNP
rs1379927248 1320 dbSNP
rs1464954092 1346 dbSNP
rs1013994401 1348 dbSNP
rs773548080 1350 dbSNP
rs1172387650 1353 dbSNP
rs891424908 1355 dbSNP
rs945740361 1357 dbSNP
rs566573511 1358 dbSNP
rs904268470 1359 dbSNP
rs1207644993 1360 dbSNP
rs1001273182 1363 dbSNP
rs532187316 1364 dbSNP
rs762798365 1382 dbSNP
rs57662750 1389 dbSNP
rs1402671785 1394 dbSNP
rs180963642 1396 dbSNP
rs1340108407 1400 dbSNP
rs1031562835 1401 dbSNP
rs1327067473 1402 dbSNP
rs1405679770 1408 dbSNP
rs1014436159 1413 dbSNP
rs1285238611 1414 dbSNP
rs1344940887 1417 dbSNP
rs958337782 1419 dbSNP
rs1391917921 1420 dbSNP
rs1332793288 1421 dbSNP
rs1391517104 1422 dbSNP
rs989716024 1426 dbSNP
rs112771967 1427 dbSNP
rs1351039882 1434 dbSNP
rs766895957 1442 dbSNP
rs931964782 1443 dbSNP
rs973433587 1451 dbSNP
rs1434486893 1453 dbSNP
rs1218512185 1457 dbSNP
rs1283507251 1458 dbSNP
rs1487743410 1461 dbSNP
rs1222632013 1462 dbSNP
rs1268787330 1467 dbSNP
rs1431963821 1472 dbSNP
rs770832650 1473 dbSNP
rs1209226645 1474 dbSNP
rs111366167 1476 dbSNP
rs1322922293 1477 dbSNP
rs1364877340 1477 dbSNP
rs1441999281 1478 dbSNP
rs1157210177 1480 dbSNP
rs1331965620 1482 dbSNP
rs553031270 1484 dbSNP
rs1295082758 1506 dbSNP
rs987427594 1507 dbSNP
rs1433406253 1526 dbSNP
rs1321839329 1527 dbSNP
rs1367729661 1527 dbSNP
rs911991331 1528 dbSNP
rs986236395 1531 dbSNP
rs911033510 1532 dbSNP
rs1467129312 1534 dbSNP
rs940744690 1539 dbSNP
rs370710108 1544 dbSNP
rs1191999898 1546 dbSNP
rs1425494064 1550 dbSNP
rs1036218786 1560 dbSNP
rs775443913 1561 dbSNP
rs976631769 1563 dbSNP
rs1253992622 1570 dbSNP
rs1202286766 1594 dbSNP
rs1345776670 1597 dbSNP
rs898977418 1599 dbSNP
rs1250989070 1605 dbSNP
rs1226402053 1606 dbSNP
rs913151289 1607 dbSNP
rs1298723950 1614 dbSNP
rs1300584721 1615 dbSNP
rs569014390 1616 dbSNP
rs537839231 1622 dbSNP
rs528842379 1624 dbSNP
rs894184669 1625 dbSNP
rs764327434 1626 dbSNP
rs185880010 1631 dbSNP
rs1024362250 1634 dbSNP
rs1266708408 1635 dbSNP
rs943527435 1639 dbSNP
rs1189467988 1647 dbSNP
rs1487259013 1649 dbSNP
rs1249819670 1657 dbSNP
rs1014385603 1659 dbSNP
rs1484194333 1664 dbSNP
rs1015554738 1673 dbSNP
rs1245756402 1674 dbSNP
rs548826486 1676 dbSNP
rs567946997 1677 dbSNP
rs12590316 1682 dbSNP
rs1177192782 1685 dbSNP
rs367693007 1697 dbSNP
rs536562199 1698 dbSNP
rs553482391 1699 dbSNP
rs144884164 1700 dbSNP
rs755577437 1701 dbSNP
rs1372065731 1705 dbSNP
rs1308236898 1708 dbSNP
rs958183502 1709 dbSNP
rs1011200543 1713 dbSNP
rs1029249003 1714 dbSNP
rs762211904 1716 dbSNP
rs1363146893 1727 dbSNP
rs953573737 1729 dbSNP
rs112066116 1730 dbSNP
rs1252875076 1733 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugccgaucaccUGGUCCACUUCa 5'
                     | ||||||||| 
Target 5' -----------AACAGGUGAAGu 3'
1 - 12
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000557649.1 | 3UTR | AACAGGUGAAGUGGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
138 hsa-miR-412-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT005780 ACVR1C activin A receptor type 1C 1 1
MIRT062013 YOD1 YOD1 deubiquitinase 2 2
MIRT345112 ATXN7L3 ataxin 7 like 3 2 2
MIRT383735 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 2
MIRT396956 CELF1 CUGBP Elav-like family member 1 2 2
MIRT439280 XIAP X-linked inhibitor of apoptosis 1 1
MIRT439313 VAT1 vesicle amine transport 1 1 1
MIRT439375 TUBA1A tubulin alpha 1a 1 1
MIRT439418 TMOD1 tropomodulin 1 1 1
MIRT439503 SURF4 surfeit 4 1 1
MIRT439563 SON SON DNA binding protein 1 1
MIRT439598 SLC3A2 solute carrier family 3 member 2 1 1
MIRT439670 SETD1B SET domain containing 1B 1 1
MIRT439767 RMND5A required for meiotic nuclear division 5 homolog A 1 1
MIRT439922 PPL periplakin 1 1
MIRT439947 PLEKHA6 pleckstrin homology domain containing A6 1 1
MIRT439952 PLCB4 phospholipase C beta 4 1 1
MIRT439961 PKD1 polycystin 1, transient receptor potential channel interacting 1 1
MIRT440005 PEG3 paternally expressed 3 1 1
MIRT440061 OSBPL8 oxysterol binding protein like 8 1 1
MIRT440166 MYH14 myosin heavy chain 14 1 1
MIRT440276 MAPK8IP1 mitogen-activated protein kinase 8 interacting protein 1 1 1
MIRT440437 IPO13 importin 13 1 1
MIRT440441 INTS3 integrator complex subunit 3 1 1
MIRT440448 INS insulin 1 1
MIRT440461 IGF2R insulin like growth factor 2 receptor 1 1
MIRT440472 IARS isoleucyl-tRNA synthetase 1 1
MIRT440530 GUCY1A3 guanylate cyclase 1 soluble subunit alpha 1 1
MIRT440542 GOLGA2 golgin A2 1 1
MIRT440569 GIGYF1 GRB10 interacting GYF protein 1 1 1
MIRT440608 FTSJD2 cap methyltransferase 1 1 1
MIRT440750 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 1 1
MIRT440781 DOT1L DOT1 like histone lysine methyltransferase 1 1
MIRT440804 DNAJA4 DnaJ heat shock protein family (Hsp40) member A4 1 1
MIRT440867 CSDE1 cold shock domain containing E1 1 1
MIRT440890 CPEB4 cytoplasmic polyadenylation element binding protein 4 1 1
MIRT440917 COL1A1 collagen type I alpha 1 chain 1 1
MIRT440967 CDH22 cadherin 22 1 1
MIRT440968 CDH2 cadherin 2 1 1
MIRT441024 CALR calreticulin 1 1
MIRT441278 ACTB actin beta 1 1
MIRT448421 TNFAIP3 TNF alpha induced protein 3 2 2
MIRT462833 BCL3 B-cell CLL/lymphoma 3 2 2
MIRT465062 TSR1 TSR1, ribosome maturation factor 2 2
MIRT476050 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT485318 MZT1 mitotic spindle organizing protein 1 2 4
MIRT493584 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 6
MIRT494567 BAK1 BCL2 antagonist/killer 1 2 2
MIRT497393 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT503250 ZNF257 zinc finger protein 257 2 10
MIRT503656 ZNF138 zinc finger protein 138 2 10
MIRT505882 RNF219 ring finger protein 219 2 2
MIRT507525 DSTN destrin, actin depolymerizing factor 2 4
MIRT510663 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT514682 ZNF701 zinc finger protein 701 2 4
MIRT515370 ZNF208 zinc finger protein 208 2 6
MIRT525237 KCNJ12 potassium voltage-gated channel subfamily J member 12 2 2
MIRT527963 MTAP methylthioadenosine phosphorylase 2 2
MIRT528482 STAMBPL1 STAM binding protein like 1 2 2
MIRT529909 C1orf64 steroid receptor associated and regulated protein 2 4
MIRT531558 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT532234 KLF2 Kruppel like factor 2 2 4
MIRT532480 HOXA13 homeobox A13 2 2
MIRT535544 P2RY2 purinergic receptor P2Y2 2 2
MIRT547311 NR1D2 nuclear receptor subfamily 1 group D member 2 2 2
MIRT551795 ZNF117 zinc finger protein 117 2 4
MIRT554939 RAP1A RAP1A, member of RAS oncogene family 2 2
MIRT558171 EIF5A2 eukaryotic translation initiation factor 5A2 2 2
MIRT568771 LY6K lymphocyte antigen 6 family member K 2 2
MIRT570766 ZNF99 zinc finger protein 99 2 2
MIRT572405 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT573396 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT610403 RXRB retinoid X receptor beta 2 2
MIRT610886 SCN8A sodium voltage-gated channel alpha subunit 8 2 2
MIRT611197 TMEM105 transmembrane protein 105 2 2
MIRT611244 ZNF550 zinc finger protein 550 2 2
MIRT615669 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 4
MIRT617974 DOCK4 dedicator of cytokinesis 4 2 2
MIRT619150 ZNF326 zinc finger protein 326 2 2
MIRT619608 MKKS McKusick-Kaufman syndrome 2 2
MIRT621053 DGKD diacylglycerol kinase delta 2 2
MIRT623665 HRK harakiri, BCL2 interacting protein 2 2
MIRT624883 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT624939 MARCH2 membrane associated ring-CH-type finger 2 2 2
MIRT634198 TMOD2 tropomodulin 2 2 4
MIRT636727 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT637741 POLR3K RNA polymerase III subunit K 2 2
MIRT638002 ZC3H13 zinc finger CCCH-type containing 13 2 2
MIRT640395 ZNF785 zinc finger protein 785 2 2
MIRT640505 ANTXR1 anthrax toxin receptor 1 2 2
MIRT641293 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT641863 STOML1 stomatin like 1 2 2
MIRT642600 C14orf180 chromosome 14 open reading frame 180 2 2
MIRT642895 CASP1 caspase 1 2 2
MIRT643967 FHL2 four and a half LIM domains 2 2 4
MIRT645237 KCTD12 potassium channel tetramerization domain containing 12 2 2
MIRT646621 CENPL centromere protein L 2 2
MIRT648620 CYB561A3 cytochrome b561 family member A3 2 2
MIRT648908 ZNF551 zinc finger protein 551 2 2
MIRT649439 HIBADH 3-hydroxyisobutyrate dehydrogenase 2 2
MIRT650637 LTF lactotransferrin 2 2
MIRT650971 STARD3NL STARD3 N-terminal like 2 2
MIRT651067 ZNF518B zinc finger protein 518B 2 4
MIRT652384 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT653958 SEPN1 selenoprotein N 2 2
MIRT656885 KIF1C kinesin family member 1C 2 2
MIRT657965 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT658080 FOXR2 forkhead box R2 2 2
MIRT662570 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT663089 METTL10 EEF1A lysine methyltransferase 2 2 2
MIRT683705 ZNF195 zinc finger protein 195 2 2
MIRT683835 ZNF682 zinc finger protein 682 2 2
MIRT706811 APOL4 apolipoprotein L4 2 2
MIRT707575 DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 2 2
MIRT708606 ZNF260 zinc finger protein 260 2 2
MIRT708859 TMSB4X thymosin beta 4, X-linked 2 2
MIRT709861 PDIK1L PDLIM1 interacting kinase 1 like 2 2
MIRT709987 RBM41 RNA binding motif protein 41 2 2
MIRT710098 KPNA5 karyopherin subunit alpha 5 2 2
MIRT710211 ENAH ENAH, actin regulator 2 2
MIRT710868 B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 2 2
MIRT710986 SUSD5 sushi domain containing 5 2 2
MIRT711460 RNF145 ring finger protein 145 2 2
MIRT712302 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT713609 SYTL4 synaptotagmin like 4 2 2
MIRT713789 MAK16 MAK16 homolog 2 2
MIRT715480 MYO9B myosin IXB 2 2
MIRT716328 POU5F1 POU class 5 homeobox 1 2 2
MIRT717252 TMEM246 transmembrane protein 246 2 2
MIRT718077 CLIC5 chloride intracellular channel 5 2 2
MIRT718463 EED embryonic ectoderm development 2 2
MIRT718645 NKPD1 NTPase KAP family P-loop domain containing 1 2 2
MIRT718982 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT721078 RPS9 ribosomal protein S9 2 2
MIRT721419 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT721863 CENPJ centromere protein J 2 2
MIRT722492 PNKD paroxysmal nonkinesigenic dyskinesia 2 2
MIRT723391 CALN1 calneuron 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-412 Gemcitabine approved 60750 Northern blot Mz-ChA-1 human cholangiocarcinoma cell lines 16762633 2006 down-regulated
miR-412 Progesterone approved 5994 Microarray Breast cancer 22330642 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-412 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-412 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-412-3p Verapamil 2520 NSC272366 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (RKO)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (HCT-116)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved sensitive High Anaplastic Thyroid Cancer tissue
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM47)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM43)
hsa-miR-412-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-412-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-412-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (Panc1-GR1)
hsa-miR-412-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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