pre-miRNA Information
pre-miRNA hsa-mir-4301   
Genomic Coordinates chr11: 113450023 - 113450088
Description Homo sapiens miR-4301 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4301
Sequence 11| UCCCACUACUUCACUUGUGA |30
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs184176277 2 dbSNP
rs1191324913 13 dbSNP
rs1369198005 15 dbSNP
rs1036973189 16 dbSNP
rs944900541 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FGFR1OP2   
Synonyms HSPC123-like, WIT3.0
Description FGFR1 oncogene partner 2
Transcript NM_001171887   
Other Transcripts NM_001171888 , NM_015633   
Expression
Putative miRNA Targets on FGFR1OP2
3'UTR of FGFR1OP2
(miRNA target sites are highlighted)
>FGFR1OP2|NM_001171887|3'UTR
   1 AGAGTTTCTGAGTCTGTGAGCTTCTTACATGGCTCCAAATGGTCAAATAAGTGAATGAATGAATGGACAGAAAATTCAAT
  81 CCTTTATTTTTTTCTCTGTAAATATGTACAGTGCACGGGCTATGAGATAGCAACAAAAAATGCATAGTTAATGGTCATAG
 161 ACTTTATTCCAAAACATAATTGGAAAATAGAAACTGAGCCATTGCCAAATGGTAAAGAAATGAAAAGTTTTCACAGTGAC
 241 TACTGAATATACCAAGAGCTTTTGGCAGTACTGCTGGCTTTCTGGGTGATTAATTAGGTAAACTTGAATATTCCCAGTAA
 321 ATGTTTGAGAATGCATAAAATTATACCAATTTAAAAATATAAATTTTTGCCACTGTTTTGTGAACGGAGGATTTGTACGC
 401 TAAATTTCATCCTTATTTGGCGTCAAAGTTGATGCAAAGTTTATGTACCATGAGACTTCTAGTGATTGCCTACTTTCACA
 481 TTTATTTAAATTTTTGTGAAAGAAAATACAGTTTTAAAGGCTATAGGAATGTGTTATATGTACCTTAAACAGATAATTTA
 561 ATTTTAGCAATTTATCATAACTGATACTTAGCTAACAATTGTCCATAACTTGTTTAAGTGTAAGAAATACCATTTCAGGA
 641 ATGAAAAAGAAGGAATACTACTTTCTAAGAAAGAAGATCTTATAATAGACATATTTAGTAGGTTAAACTACTCCTTTGAA
 721 AGAATAAGTTTTGGTTCAAAGTCAATAATGAAGACGAGATTTGTTTTTCTCTTCTCTGGCTGATTTTTAAGGATATTATG
 801 TAGTTCATTTAGTTAACAGAATTGAAATGTTTGATATGGCAAGATAGGTATGGTAATTTCAAAGTGAATTGGGAATTCCT
 881 CTGGCTCATAGAACCCTTTTTTTTTTCCTTTAAGTATTCTTGAGATACAAAAAAAAAAAGTAAATACAATTTCAAAAAAA
 961 AAGTTCCGGATCTGTTTTTAAGCTCCATCTGGTCCTCATAACCTGCAAGATTTTTCTTAAAACCTTTCAGCTGAAAGTGG
1041 GGGTAAAGGTGGAGTAATCTGTGGATTTGTTTCTGTTGTCTTTTAAAATGTCAAATATATAATATGTAATTTTTTTAAAA
1121 ACCACCAGATACAGAAATGTGCTTTAACATCAGTTGAAACCTAAATTTTCTTATGTTGTGGTGATTGTATTAAAAAGGGA
1201 TAAAAGAAGAGTGTCAAACATGGTTAAATATATTGTACTCATTTATGTTGAATACGTATTAAAATTAAGACAAATGGAAA
1281 ATTATACTTTGAGTATATAATTTGTTAAATATTACTTTATATGGTAATTTTATGTATAATTTCATATATTGGTAAAATTC
1361 AAAACTACACTTGAGAATTTTTTTATCTTAAGTTTGGGGTGAATGGGGTGGATGAGACTGATTGAATAGAAAAGGGCTAA
1441 TGGCCCAAACATTATATAGATTTCTTTTTTTCAGTCAGAGGCCTTATTTGATATTTTATAAATAAATGACAGTTTTTATT
1521 TTTAAACTTTTTATTGTTTTTGGGAAAGTATTCCTTAATTTAATGACACATTCATTCAGATACTTCTTATCCCTGCTAAT
1601 AAAGGAAATCTATTTCAAGCTACACCATTGAGATTAAGTCTGAGGCAGTTCATTGAGGCAGCTCTACTATAAAAGCTTAC
1681 TTGATAAATAATTATTTTTGTAAACAAGTTGGGTTAACTTATTCTTCGTCTTTTTGCTTGGATATGAATTTAAGGTCTTC
1761 ATGTTTAAAGACATTTACTTTGTTATTTAGTGACACATTTCCATCCTATTTTTTTTTTTTTTTTGGTTGTTGTTAAACAG
1841 AACCTTAAGTTTATGTTTGAGGTATGTACTGCATAGGAACCTATTTTATTATTAAAGATGAATGATTAAAATTGG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aguGUUCACUUCAUCACCCu 5'
             ||: ||||  |||||| 
Target 5' tttCAGCTGAA--AGTGGGg 3'
1025 - 1042 132.00 -14.20
2
miRNA  3' agUGUUCACU---U-CAUCACCCu 5'
            |:||  ||   |  |||| || 
Target 5' ttATAATAGACATATTTAGTAGGt 3'
680 - 703 110.00 -5.74
3
miRNA  3' agugUUCACUUCAUCACCCu 5'
              ||||||   | |||| 
Target 5' ttcaAAGTGA---ATTGGGa 3'
858 - 874 100.00 -12.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN25394306 9 COSMIC
COSN31586986 9 COSMIC
COSN31494700 54 COSMIC
COSN30516014 63 COSMIC
COSN30500779 71 COSMIC
COSN30161507 80 COSMIC
COSN30493178 88 COSMIC
COSN30167781 97 COSMIC
COSN31572839 103 COSMIC
COSN1568723 109 COSMIC
COSN31567307 112 COSMIC
COSN30105639 125 COSMIC
COSN22722123 344 COSMIC
COSN23051793 436 COSMIC
COSN5796168 570 COSMIC
COSN31530467 680 COSMIC
COSN31568574 807 COSMIC
COSN9083092 1270 COSMIC
COSN21062285 1512 COSMIC
COSN7324933 1814 COSMIC
COSN17182164 1832 COSMIC
COSN5939923 1854 COSMIC
COSN1568724 1908 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1211606073 1 dbSNP
rs1256920104 3 dbSNP
rs780809544 7 dbSNP
rs774079124 10 dbSNP
rs1382290261 15 dbSNP
rs1421345119 15 dbSNP
rs1182772528 22 dbSNP
rs551005221 24 dbSNP
rs1248808974 25 dbSNP
rs188286139 25 dbSNP
rs192613947 28 dbSNP
rs772643690 29 dbSNP
rs199679959 30 dbSNP
rs765970740 32 dbSNP
rs753470029 33 dbSNP
rs372501738 34 dbSNP
rs1413468620 38 dbSNP
rs765619499 39 dbSNP
rs1363296776 40 dbSNP
rs1280228409 45 dbSNP
rs753014631 47 dbSNP
rs748009554 52 dbSNP
rs1279681594 61 dbSNP
rs1237823514 67 dbSNP
rs558212537 80 dbSNP
rs927647725 90 dbSNP
rs1415151101 94 dbSNP
rs939009521 95 dbSNP
rs1291679369 103 dbSNP
rs1352485108 110 dbSNP
rs1052818790 111 dbSNP
rs892373548 117 dbSNP
rs770944768 118 dbSNP
rs1159249403 121 dbSNP
rs1363396914 123 dbSNP
rs1362295506 124 dbSNP
rs1202156663 128 dbSNP
rs1011203438 130 dbSNP
rs1257313677 130 dbSNP
rs1186403496 135 dbSNP
rs148485812 136 dbSNP
rs1209929833 137 dbSNP
rs1347992567 141 dbSNP
rs534810015 147 dbSNP
rs1208375547 154 dbSNP
rs1253538731 173 dbSNP
rs1354559682 176 dbSNP
rs1006992139 177 dbSNP
rs1401723360 180 dbSNP
rs1326957293 181 dbSNP
rs1318998370 188 dbSNP
rs1018357681 189 dbSNP
rs377157814 195 dbSNP
rs965393542 207 dbSNP
rs998195926 209 dbSNP
rs1476640205 223 dbSNP
rs578239874 223 dbSNP
rs1243184307 224 dbSNP
rs1193173455 240 dbSNP
rs544033956 249 dbSNP
rs1444744486 250 dbSNP
rs185347570 253 dbSNP
rs1026351073 260 dbSNP
rs376694629 268 dbSNP
rs1213875259 289 dbSNP
rs369157843 293 dbSNP
rs1361598641 302 dbSNP
rs951670611 349 dbSNP
rs1270964983 350 dbSNP
rs1478710094 359 dbSNP
rs189931599 361 dbSNP
rs1339901904 364 dbSNP
rs1269516934 372 dbSNP
rs1403454580 374 dbSNP
rs1428600833 377 dbSNP
rs1328037602 386 dbSNP
rs541679796 386 dbSNP
rs1270515222 387 dbSNP
rs1311392209 388 dbSNP
rs1163120014 389 dbSNP
rs969500668 399 dbSNP
rs563847526 400 dbSNP
rs1167817667 404 dbSNP
rs867219631 410 dbSNP
rs1474725446 413 dbSNP
rs1396320393 416 dbSNP
rs1193716295 417 dbSNP
rs1467705919 422 dbSNP
rs182011897 423 dbSNP
rs1206264539 424 dbSNP
rs1438155002 436 dbSNP
rs1272087428 438 dbSNP
rs1334117873 445 dbSNP
rs1235508905 451 dbSNP
rs1305639024 468 dbSNP
rs1235094466 470 dbSNP
rs1275372405 490 dbSNP
rs1324093780 493 dbSNP
rs1444692777 497 dbSNP
rs1344144358 508 dbSNP
rs1355429202 508 dbSNP
rs1408644176 519 dbSNP
rs574068216 521 dbSNP
rs1453265812 525 dbSNP
rs913517455 538 dbSNP
rs184900288 539 dbSNP
rs1470323347 544 dbSNP
rs946672460 554 dbSNP
rs545606639 557 dbSNP
rs1044006502 568 dbSNP
rs888980433 578 dbSNP
rs1247958724 589 dbSNP
rs1210125321 590 dbSNP
rs1452842865 592 dbSNP
rs1347209866 593 dbSNP
rs943164433 599 dbSNP
rs564192959 606 dbSNP
rs1378745738 610 dbSNP
rs1039850745 623 dbSNP
rs1374331952 625 dbSNP
rs901250082 629 dbSNP
rs1172283657 658 dbSNP
rs745852693 661 dbSNP
rs1313988862 677 dbSNP
rs1434694619 678 dbSNP
rs998645042 682 dbSNP
rs188437097 683 dbSNP
rs1380389158 684 dbSNP
rs1406813866 690 dbSNP
rs1175183855 691 dbSNP
rs1025647008 711 dbSNP
rs1258018116 712 dbSNP
rs1187072710 716 dbSNP
rs887086547 719 dbSNP
rs1254257556 742 dbSNP
rs1005817147 747 dbSNP
rs540832805 751 dbSNP
rs1297887442 753 dbSNP
rs1283823088 756 dbSNP
rs1017130021 757 dbSNP
rs562223975 763 dbSNP
rs1294314486 767 dbSNP
rs1414667124 769 dbSNP
rs969555291 792 dbSNP
rs1290059402 800 dbSNP
rs980895749 810 dbSNP
rs543144677 812 dbSNP
rs139362292 815 dbSNP
rs1156463629 822 dbSNP
rs180910432 823 dbSNP
rs748569937 826 dbSNP
rs111796365 832 dbSNP
rs1438671069 833 dbSNP
rs1474152057 835 dbSNP
rs1263744214 838 dbSNP
rs1299702908 851 dbSNP
rs770391690 880 dbSNP
rs1342676792 888 dbSNP
rs1227384040 889 dbSNP
rs1207004835 890 dbSNP
rs1249279654 894 dbSNP
rs1337265908 895 dbSNP
rs1274130787 896 dbSNP
rs1320357780 897 dbSNP
rs913580181 897 dbSNP
rs1357970503 907 dbSNP
rs1383314220 907 dbSNP
rs1209947371 908 dbSNP
rs1266105278 909 dbSNP
rs1442566539 911 dbSNP
rs1466734426 912 dbSNP
rs1192369432 913 dbSNP
rs1250441822 914 dbSNP
rs1450485510 915 dbSNP
rs1170116152 917 dbSNP
rs1371576737 920 dbSNP
rs1459600903 923 dbSNP
rs1164015302 925 dbSNP
rs551269157 926 dbSNP
rs1438782498 927 dbSNP
rs1171033281 929 dbSNP
rs1427873840 929 dbSNP
rs778273243 929 dbSNP
rs1322541732 936 dbSNP
rs1186764541 938 dbSNP
rs1469946810 943 dbSNP
rs900743 948 dbSNP
rs112380753 950 dbSNP
rs1253467605 951 dbSNP
rs1293130240 952 dbSNP
rs1235831456 954 dbSNP
rs1294692867 954 dbSNP
rs1307427419 954 dbSNP
rs1342012741 960 dbSNP
rs943218191 963 dbSNP
rs1245133167 967 dbSNP
rs551625726 968 dbSNP
rs1398302007 969 dbSNP
rs566950840 975 dbSNP
rs1461363515 978 dbSNP
rs375265775 988 dbSNP
rs1352703756 993 dbSNP
rs149444997 994 dbSNP
rs1455641598 996 dbSNP
rs1270591850 999 dbSNP
rs1395816839 1009 dbSNP
rs1262599738 1010 dbSNP
rs1431690469 1016 dbSNP
rs1465705709 1017 dbSNP
rs1047563436 1019 dbSNP
rs1260131853 1034 dbSNP
rs142600914 1043 dbSNP
rs1005950133 1048 dbSNP
rs1188576613 1050 dbSNP
rs1017172404 1055 dbSNP
rs905458172 1061 dbSNP
rs1230565311 1069 dbSNP
rs1459942579 1070 dbSNP
rs1307374248 1087 dbSNP
rs763056784 1099 dbSNP
rs139875644 1105 dbSNP
rs1348475859 1110 dbSNP
rs185755898 1117 dbSNP
rs1376100102 1118 dbSNP
rs1453021082 1122 dbSNP
rs961130765 1125 dbSNP
rs987936892 1131 dbSNP
rs1182882621 1132 dbSNP
rs1418830156 1134 dbSNP
rs1250125817 1147 dbSNP
rs1190637741 1148 dbSNP
rs1287026424 1151 dbSNP
rs769554965 1154 dbSNP
rs1198246899 1155 dbSNP
rs1352294064 1164 dbSNP
rs967778662 1166 dbSNP
rs774468087 1168 dbSNP
rs1292300344 1175 dbSNP
rs1353117753 1176 dbSNP
rs910185843 1177 dbSNP
rs1354755367 1178 dbSNP
rs116041150 1179 dbSNP
rs975974296 1184 dbSNP
rs191496173 1188 dbSNP
rs1288383519 1200 dbSNP
rs923114630 1202 dbSNP
rs929119744 1202 dbSNP
rs1456936116 1204 dbSNP
rs1215763406 1207 dbSNP
rs1047169158 1208 dbSNP
rs1167559428 1230 dbSNP
rs369681654 1236 dbSNP
rs941418495 1241 dbSNP
rs373181303 1246 dbSNP
rs181144824 1256 dbSNP
rs762044268 1257 dbSNP
rs1474328196 1261 dbSNP
rs551350451 1267 dbSNP
rs896675127 1271 dbSNP
rs12818194 1273 dbSNP
rs1274751698 1280 dbSNP
rs1233659626 1291 dbSNP
rs539408717 1292 dbSNP
rs1418565614 1298 dbSNP
rs1156921668 1302 dbSNP
rs1229584552 1302 dbSNP
rs12819730 1307 dbSNP
rs1360760327 1326 dbSNP
rs1010147686 1336 dbSNP
rs1386748421 1346 dbSNP
rs1020736054 1355 dbSNP
rs1462292880 1368 dbSNP
rs1413580052 1369 dbSNP
rs1161958507 1371 dbSNP
rs968211017 1375 dbSNP
rs1411318642 1377 dbSNP
rs1187402047 1378 dbSNP
rs12824645 1401 dbSNP
rs12823559 1402 dbSNP
rs1254486633 1404 dbSNP
rs1213972576 1414 dbSNP
rs1467850327 1417 dbSNP
rs1287495618 1419 dbSNP
rs1308238321 1419 dbSNP
rs1372051313 1423 dbSNP
rs1339999170 1428 dbSNP
rs377472226 1440 dbSNP
rs564843263 1443 dbSNP
rs1221567205 1451 dbSNP
rs1227748738 1456 dbSNP
rs1363203241 1460 dbSNP
rs1305865242 1463 dbSNP
rs1349616960 1465 dbSNP
rs1441985764 1465 dbSNP
rs866491653 1476 dbSNP
rs964346991 1482 dbSNP
rs1397816668 1492 dbSNP
rs1235521450 1495 dbSNP
rs1447096000 1500 dbSNP
rs1280123860 1503 dbSNP
rs555262231 1509 dbSNP
rs773881017 1510 dbSNP
rs923164988 1513 dbSNP
rs1252810252 1529 dbSNP
rs1193823120 1533 dbSNP
rs1480351924 1542 dbSNP
rs1244698249 1545 dbSNP
rs187102775 1553 dbSNP
rs1206379204 1555 dbSNP
rs1438242333 1564 dbSNP
rs1175499637 1566 dbSNP
rs1202989548 1568 dbSNP
rs1340115805 1569 dbSNP
rs1282594612 1570 dbSNP
rs950620448 1571 dbSNP
rs1433661690 1575 dbSNP
rs1273351854 1578 dbSNP
rs572904892 1580 dbSNP
rs983696388 1584 dbSNP
rs909004598 1594 dbSNP
rs540297315 1600 dbSNP
rs1431383587 1609 dbSNP
rs1428406821 1613 dbSNP
rs1376700944 1619 dbSNP
rs1168908576 1623 dbSNP
rs1413496613 1625 dbSNP
rs1422606249 1627 dbSNP
rs1353490177 1629 dbSNP
rs562290196 1630 dbSNP
rs1038387253 1633 dbSNP
rs1470373763 1639 dbSNP
rs1250868878 1654 dbSNP
rs1179867635 1667 dbSNP
rs1486631933 1679 dbSNP
rs1259629629 1688 dbSNP
rs926653837 1693 dbSNP
rs1311744556 1700 dbSNP
rs937994308 1703 dbSNP
rs1225733644 1708 dbSNP
rs1351786830 1713 dbSNP
rs114344031 1719 dbSNP
rs1408465173 1722 dbSNP
rs896723343 1724 dbSNP
rs1009788022 1725 dbSNP
rs1042953265 1727 dbSNP
rs1356973617 1728 dbSNP
rs903998402 1729 dbSNP
rs1246770961 1743 dbSNP
rs1442350447 1745 dbSNP
rs1303299358 1756 dbSNP
rs1410906462 1778 dbSNP
rs868717738 1795 dbSNP
rs1156696012 1804 dbSNP
rs1446863134 1807 dbSNP
rs1482953534 1807 dbSNP
rs1235827424 1808 dbSNP
rs1000631881 1809 dbSNP
rs1228305205 1809 dbSNP
rs1290153841 1809 dbSNP
rs1376287426 1809 dbSNP
rs1387432459 1809 dbSNP
rs1478835417 1809 dbSNP
rs370100358 1809 dbSNP
rs199530858 1810 dbSNP
rs79079534 1810 dbSNP
rs1418366431 1811 dbSNP
rs74835021 1811 dbSNP
rs1411004784 1812 dbSNP
rs1422017338 1812 dbSNP
rs964398935 1818 dbSNP
rs1188373009 1822 dbSNP
rs1450232127 1822 dbSNP
rs80002985 1825 dbSNP
rs1161284185 1826 dbSNP
rs1207105067 1826 dbSNP
rs61923403 1827 dbSNP
rs910926360 1830 dbSNP
rs943616059 1833 dbSNP
rs1202561164 1836 dbSNP
rs116043123 1837 dbSNP
rs1320470281 1841 dbSNP
rs1297029977 1842 dbSNP
rs1488834477 1850 dbSNP
rs1192993130 1853 dbSNP
rs1251055379 1854 dbSNP
rs190496025 1865 dbSNP
rs533220620 1867 dbSNP
rs1294932094 1869 dbSNP
rs1442670698 1873 dbSNP
rs551752434 1884 dbSNP
rs950693085 1885 dbSNP
rs1451100116 1889 dbSNP
rs1168924529 1908 dbSNP
rs1292760334 1912 dbSNP
rs1418374910 1915 dbSNP
rs767047308 1916 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aguguucacuucaUCACCCu 5'
                       |||||| 
Target 5' ------------gAGUGGGa 3'
1 - 8
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000546072.1 | 3UTR | GAGUGGGAGGUUGCAGUGAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
83 hsa-miR-4301 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT081134 LDLR low density lipoprotein receptor 2 4
MIRT090911 ARHGEF26 Rho guanine nucleotide exchange factor 26 2 2
MIRT229436 MECP2 methyl-CpG binding protein 2 2 2
MIRT274717 CPSF6 cleavage and polyadenylation specific factor 6 2 2
MIRT350957 BACH1 BTB domain and CNC homolog 1 2 2
MIRT386722 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT446022 PEX3 peroxisomal biogenesis factor 3 2 2
MIRT481303 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 14
MIRT483959 ZNF354B zinc finger protein 354B 2 6
MIRT495667 TUBAL3 tubulin alpha like 3 2 2
MIRT496554 TBX15 T-box 15 2 2
MIRT497702 ARL6IP6 ADP ribosylation factor like GTPase 6 interacting protein 6 2 2
MIRT498105 RMND5A required for meiotic nuclear division 5 homolog A 2 2
MIRT512535 SEMA4D semaphorin 4D 2 2
MIRT512556 MFN2 mitofusin 2 2 6
MIRT521465 RABGAP1 RAB GTPase activating protein 1 2 6
MIRT526236 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT526743 HLA-DOB major histocompatibility complex, class II, DO beta 2 2
MIRT527578 BRD7 bromodomain containing 7 2 4
MIRT528038 WT1 Wilms tumor 1 2 2
MIRT528267 GPRIN2 G protein regulated inducer of neurite outgrowth 2 2 2
MIRT528505 HTR7 5-hydroxytryptamine receptor 7 2 4
MIRT528758 RPS27 ribosomal protein S27 2 6
MIRT528999 IPO9 importin 9 2 2
MIRT529701 MRPL30 mitochondrial ribosomal protein L30 2 2
MIRT529781 C17orf82 chromosome 17 open reading frame 82 2 2
MIRT533797 TMEM119 transmembrane protein 119 2 6
MIRT535308 PHF12 PHD finger protein 12 2 2
MIRT535917 MKL2 MKL1/myocardin like 2 2 2
MIRT544892 OSBPL1A oxysterol binding protein like 1A 2 2
MIRT555423 PPIC peptidylprolyl isomerase C 2 2
MIRT562068 KLHL15 kelch like family member 15 2 2
MIRT565623 SLC31A1 solute carrier family 31 member 1 2 2
MIRT565661 SIX1 SIX homeobox 1 2 2
MIRT570138 IL1RL2 interleukin 1 receptor like 2 2 2
MIRT571045 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT621232 LMAN1 lectin, mannose binding 1 2 2
MIRT622272 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT623844 GAN gigaxonin 2 2
MIRT626158 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626464 CMKLR1 chemerin chemokine-like receptor 1 2 2
MIRT632087 ALDH1A2 aldehyde dehydrogenase 1 family member A2 2 2
MIRT637243 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT642710 FGFR1OP2 FGFR1 oncogene partner 2 2 2
MIRT643611 KANSL3 KAT8 regulatory NSL complex subunit 3 2 2
MIRT644270 PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 2 2
MIRT645470 SPIN3 spindlin family member 3 2 2
MIRT649193 DNPEP aspartyl aminopeptidase 2 2
MIRT650776 POP4 POP4 homolog, ribonuclease P/MRP subunit 2 2
MIRT651345 ZC2HC1C zinc finger C2HC-type containing 1C 2 2
MIRT652237 TRAPPC3L trafficking protein particle complex 3 like 2 2
MIRT652587 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT654591 PURA purine rich element binding protein A 2 2
MIRT654649 PTAFR platelet activating factor receptor 2 2
MIRT656842 KLF7 Kruppel like factor 7 2 2
MIRT657209 IKZF2 IKAROS family zinc finger 2 2 2
MIRT658513 ETV3 ETS variant 3 2 2
MIRT659448 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT668816 CYLD CYLD lysine 63 deubiquitinase 2 2
MIRT669067 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 2
MIRT677711 ELOF1 elongation factor 1 homolog 2 4
MIRT687146 PTPN12 protein tyrosine phosphatase, non-receptor type 12 2 2
MIRT698498 THOC2 THO complex 2 2 2
MIRT707930 PPP1R3D protein phosphatase 1 regulatory subunit 3D 4 2
MIRT708737 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT710031 POLL DNA polymerase lambda 2 2
MIRT712175 STK4 serine/threonine kinase 4 2 2
MIRT715297 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT716892 AGPAT6 glycerol-3-phosphate acyltransferase 4 2 2
MIRT717378 RBM41 RNA binding motif protein 41 2 2
MIRT718082 CLIC5 chloride intracellular channel 5 2 2
MIRT718721 ANKRD18A ankyrin repeat domain 18A 2 2
MIRT719152 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT719224 CAMK4 calcium/calmodulin dependent protein kinase IV 2 2
MIRT719528 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT719861 KLF2 Kruppel like factor 2 2 2
MIRT720326 CAMK2G calcium/calmodulin dependent protein kinase II gamma 2 2
MIRT721596 SREBF1 sterol regulatory element binding transcription factor 1 2 2
MIRT722020 NEBL nebulette 2 2
MIRT722484 QSOX1 quiescin sulfhydryl oxidase 1 2 2
MIRT722614 TEAD1 TEA domain transcription factor 1 2 2
MIRT723664 RPTN repetin 2 2
MIRT723939 SVOP SV2 related protein 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4301 Cisplatin 5460033 NSC119875 approved sensitive High Hepatocellular Carcinoma cell line (Hep3B, 97L)
hsa-miR-4301 Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-mir-4301 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-mir-4301 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-4301 Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-4301 Methotrexate 126941 NSC740 approved sensitive cell line (W1)
hsa-mir-4301 Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-miR-4301 Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4301 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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