pre-miRNA Information
pre-miRNA hsa-mir-4433a   
Genomic Coordinates chr2: 64340759 - 64340839
Description Homo sapiens miR-4433a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4433a-3p
Sequence 51| ACAGGAGUGGGGGUGGGACAU |71
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs751480515 9 dbSNP
rs557760377 15 dbSNP
rs1479580865 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SLC25A17   
Synonyms PMP34
Description solute carrier family 25 member 17
Transcript NM_006358   
Expression
Putative miRNA Targets on SLC25A17
3'UTR of SLC25A17
(miRNA target sites are highlighted)
>SLC25A17|NM_006358|3'UTR
   1 GACGCCTTCCCATGAAAAATTCCGAAGATGCTCAAGAGGGAGGTTTCCTCCTGAGTGAAGAGAAGTGATTCTCCCTTGAC
  81 TCTGGCTCCTGCCACCACAAATGTTACCCTCATTGGCTTGAAAAGCATCCAAGGGTGCACAGGGAGTATGGCCAACTGGA
 161 CCTGTTGTCACCTTAATTGTCATGCTGGCTGGTTGGATTTTGGGGTGGCAGTTGGACTAATGTGAAAAAAACATTGCTGA
 241 AAACCTAAAAATGAAAGTTTGTGAGTGTTTATTGGTTTTCTTAAGAGAAATGGACTATTTTGCTCTCATGTGTAATGTTT
 321 TCTATTTAAATCTTTCTTAAATATACCAGCTGTTCTCTTTCCCTGAACTCTCCCCCAGGTTCTAGGACAAATTTAATAAC
 401 ATGTAATTCTCCTCAAATACTTTTGTATGTCTCAGTGTTGGTGTTTTCCTCCCTAAAACTAACATTAGGGCTGTGCCACG
 481 GGCATGACTTTATTTTTGTTGGGCTTTTTTTTCCCTGCTTAAGGAGAGGTGTCTTTTTTGGATATGAGCTATTTATTTTG
 561 TGAAATGAAAATTGTTCACCCAAATGATTCTCTTATAAACTATTTGTAAATGTCACTTATTCATTAGTGTTTGACATAAT
 641 TTTTAGAATATTTATTTTGAATCAATCCTTTCATTACGAAAGACTTGAAGTTTTGTGTCCATTCTTACAAGCCCTGGTCA
 721 GTCAAGTCCCAATAAATGGTCAGCACAAAAAAGATATTCTTGAAAATTGCTCTTTATTAAGGTATTACGTTGAGTTTGCA
 801 ACCAGATGGGAAAAATCACAAAAATGAGAAGGGGAGCAGATATCTTGTTGAGGTCTGGATATTATCTCCCTTTATAAACT
 881 TGGTGTAGGCCGTATATTTTGAAAATAAACATCTGGTTGAGGTTATTTCATTTGGAAACCTTCCTTAGAGTCCTGTTGCT
 961 CAGTGTGGTCCATCAGACGGTAGTACTGCCACAAGCTGAGAGCTTGCTGGGCACGCAACCCAGAGTTTCTGAATCCTGTT
1041 CCGTATTTTAACATTCCCAGGTGATTCACAGCCACATTAAAGTTCAGGAGACCATAGGACCCCTGACCCATGAGAAGAAG
1121 TGATTGGTTTCGATTATAGACATCAAGATAAAGATTTTTCTCAAAGGAAAGAGATTAATGTATTAAAACAACCTCTGAAA
1201 AATCAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uacAGGG---UGGGGGUGAGGACa 5'
             ||||   ||:|: :|||||| 
Target 5' ttcTCCCTTGACTCTGGCTCCTGc 3'
69 - 92 146.00 -21.40
2
miRNA  3' uacaggguggggguGAGGACa 5'
                        |||||| 
Target 5' aagagggaggtttcCTCCTGa 3'
34 - 54 120.00 -11.00
3
miRNA  3' uacaGGGU----GGGGGUGAGGACa 5'
              ||||    ::|: | ||||| 
Target 5' gcaaCCCAGAGTTTCTGAATCCTGt 3'
1015 - 1039 119.00 -15.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN28392855 2 COSMIC
COSN30487632 9 COSMIC
COSN15316095 19 COSMIC
COSN30447243 38 COSMIC
COSN16131589 40 COSMIC
COSN32053762 57 COSMIC
COSN13917053 75 COSMIC
COSN30151637 78 COSMIC
COSN30488103 88 COSMIC
COSN26439082 148 COSMIC
COSN31597730 172 COSMIC
COSN36572 355 COSMIC
COSN20941053 714 COSMIC
COSN22595949 863 COSMIC
COSN21215682 998 COSMIC
COSN31961981 1109 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs750316329 1 dbSNP
rs375336785 3 dbSNP
rs372701218 4 dbSNP
rs1198595821 9 dbSNP
rs753653272 12 dbSNP
rs763923899 13 dbSNP
rs147802342 19 dbSNP
rs752410526 23 dbSNP
rs767043883 24 dbSNP
rs1482897505 27 dbSNP
rs1197678418 28 dbSNP
rs769572734 30 dbSNP
rs758986622 31 dbSNP
rs773703824 33 dbSNP
rs765697675 39 dbSNP
rs762190632 40 dbSNP
rs1180662069 41 dbSNP
rs926748090 42 dbSNP
rs777115951 50 dbSNP
rs1422681641 56 dbSNP
rs1332782734 57 dbSNP
rs979662558 60 dbSNP
rs748091201 61 dbSNP
rs946941733 67 dbSNP
rs528758790 68 dbSNP
rs911284731 71 dbSNP
rs1427529704 72 dbSNP
rs985513535 72 dbSNP
rs112608141 77 dbSNP
rs1304912847 83 dbSNP
rs149685261 89 dbSNP
rs1346037740 98 dbSNP
rs1437346007 100 dbSNP
rs1274324504 111 dbSNP
rs1365844203 112 dbSNP
rs955358457 113 dbSNP
rs770319512 117 dbSNP
rs541761828 118 dbSNP
rs1174428566 125 dbSNP
rs1216558487 132 dbSNP
rs913590523 135 dbSNP
rs17002150 155 dbSNP
rs556163276 176 dbSNP
rs780048210 179 dbSNP
rs188985685 185 dbSNP
rs1490649425 188 dbSNP
rs1220260809 202 dbSNP
rs1018689211 205 dbSNP
rs994426684 206 dbSNP
rs1178323210 208 dbSNP
rs961590429 209 dbSNP
rs1389127613 221 dbSNP
rs1017119219 222 dbSNP
rs953239782 227 dbSNP
rs1456608186 232 dbSNP
rs1366180315 233 dbSNP
rs577635750 234 dbSNP
rs994768104 251 dbSNP
rs1348224713 252 dbSNP
rs1432912405 260 dbSNP
rs576972686 261 dbSNP
rs1226707801 263 dbSNP
rs1196432535 274 dbSNP
rs897721311 275 dbSNP
rs1228254889 291 dbSNP
rs1015633598 295 dbSNP
rs905639480 303 dbSNP
rs1480933552 309 dbSNP
rs1044529628 324 dbSNP
rs1004211509 332 dbSNP
rs1247084920 343 dbSNP
rs1463260671 346 dbSNP
rs1013914675 352 dbSNP
rs1472312521 353 dbSNP
rs1161410138 356 dbSNP
rs1410015667 357 dbSNP
rs896604306 377 dbSNP
rs1321272274 378 dbSNP
rs1388251049 388 dbSNP
rs1433161202 395 dbSNP
rs1338868782 396 dbSNP
rs1341459145 401 dbSNP
rs182675927 402 dbSNP
rs1447710027 403 dbSNP
rs1230803471 409 dbSNP
rs111504881 411 dbSNP
rs1313681234 416 dbSNP
rs1228534188 417 dbSNP
rs895488120 420 dbSNP
rs1266936795 424 dbSNP
rs1052691432 425 dbSNP
rs558701733 427 dbSNP
rs1205195176 436 dbSNP
rs904421276 440 dbSNP
rs1374154904 444 dbSNP
rs1056557745 453 dbSNP
rs938059731 461 dbSNP
rs905374260 470 dbSNP
rs1042924839 479 dbSNP
rs1160081781 480 dbSNP
rs943191542 492 dbSNP
rs1411332672 505 dbSNP
rs1301533170 509 dbSNP
rs1468018626 512 dbSNP
rs1043851725 513 dbSNP
rs946995612 513 dbSNP
rs911351090 526 dbSNP
rs1158386077 529 dbSNP
rs985547258 535 dbSNP
rs559160280 537 dbSNP
rs1348115870 540 dbSNP
rs944385089 547 dbSNP
rs934032153 549 dbSNP
rs922609050 551 dbSNP
rs1438119902 554 dbSNP
rs911507386 556 dbSNP
rs1274850779 559 dbSNP
rs1382356704 560 dbSNP
rs1181382118 581 dbSNP
rs1182667351 588 dbSNP
rs972702809 589 dbSNP
rs1471674773 599 dbSNP
rs1201659423 601 dbSNP
rs985903626 602 dbSNP
rs1465729299 626 dbSNP
rs961672764 638 dbSNP
rs1017590364 644 dbSNP
rs1399101533 650 dbSNP
rs984338404 665 dbSNP
rs1308000504 666 dbSNP
rs1369210315 667 dbSNP
rs1406290890 672 dbSNP
rs1301341790 673 dbSNP
rs1255406766 676 dbSNP
rs953217427 677 dbSNP
rs534402698 678 dbSNP
rs1486607236 679 dbSNP
rs1023095026 689 dbSNP
rs1271513990 699 dbSNP
rs11806 703 dbSNP
rs1204129330 707 dbSNP
rs973213445 710 dbSNP
rs1272452236 716 dbSNP
rs895545332 727 dbSNP
rs375343274 732 dbSNP
rs1031321753 743 dbSNP
rs1014550678 745 dbSNP
rs960748591 753 dbSNP
rs555099719 757 dbSNP
rs116005203 758 dbSNP
rs1388926521 765 dbSNP
rs560146230 770 dbSNP
rs1339312980 771 dbSNP
rs1294565518 777 dbSNP
rs904471791 788 dbSNP
rs569140363 789 dbSNP
rs1319915405 805 dbSNP
rs1365445116 810 dbSNP
rs569661968 812 dbSNP
rs1295122794 825 dbSNP
rs1361249588 836 dbSNP
rs1245441861 842 dbSNP
rs1488213399 843 dbSNP
rs757630538 843 dbSNP
rs892759136 844 dbSNP
rs1250192272 845 dbSNP
rs745362484 853 dbSNP
rs1297997657 854 dbSNP
rs1188408482 858 dbSNP
rs1388715013 861 dbSNP
rs1425866823 866 dbSNP
rs1166140491 878 dbSNP
rs1368360238 885 dbSNP
rs550979135 891 dbSNP
rs12158059 892 dbSNP
rs1389007389 896 dbSNP
rs922664414 915 dbSNP
rs754370869 921 dbSNP
rs1457585858 922 dbSNP
rs745814544 922 dbSNP
rs940009871 926 dbSNP
rs533291032 935 dbSNP
rs367858950 944 dbSNP
rs756939407 952 dbSNP
rs1319835120 953 dbSNP
rs1050488519 955 dbSNP
rs1270091621 958 dbSNP
rs931772136 961 dbSNP
rs984783131 968 dbSNP
rs1246369484 969 dbSNP
rs920335992 972 dbSNP
rs970302137 978 dbSNP
rs961878339 979 dbSNP
rs907678464 985 dbSNP
rs551912505 986 dbSNP
rs1192705716 992 dbSNP
rs1456200949 996 dbSNP
rs1487146553 1013 dbSNP
rs1285928651 1014 dbSNP
rs992937914 1015 dbSNP
rs1466399708 1020 dbSNP
rs1205426583 1022 dbSNP
rs1355171174 1028 dbSNP
rs527486344 1030 dbSNP
rs1302036753 1031 dbSNP
rs1263223431 1036 dbSNP
rs117012345 1043 dbSNP
rs1288847575 1056 dbSNP
rs191113447 1060 dbSNP
rs992771980 1063 dbSNP
rs959810516 1071 dbSNP
rs1266518075 1079 dbSNP
rs1314142331 1082 dbSNP
rs751305662 1085 dbSNP
rs1278053473 1087 dbSNP
rs1031374148 1090 dbSNP
rs752855012 1095 dbSNP
rs185814758 1097 dbSNP
rs960205741 1098 dbSNP
rs904187516 1127 dbSNP
rs1021254652 1131 dbSNP
rs1007899323 1132 dbSNP
rs1319381929 1136 dbSNP
rs1386459146 1140 dbSNP
rs767636122 1148 dbSNP
rs969477991 1151 dbSNP
rs1433409518 1154 dbSNP
rs41281281 1160 dbSNP
rs1461993009 1171 dbSNP
rs1010906414 1174 dbSNP
rs544211687 1178 dbSNP
rs1308592648 1192 dbSNP
rs1369841644 1193 dbSNP
rs564564368 1197 dbSNP
rs1053001887 1202 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000435456.2 | 3UTR | UCAAGAGGGAGGUUUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000435456.2 | 3UTR | UCAAGAGGGAGGUUUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
256 hsa-miR-4433a-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT088097 SEPT2 septin 2 2 2
MIRT143134 MGRN1 mahogunin ring finger 1 2 2
MIRT153912 NCOA3 nuclear receptor coactivator 3 2 2
MIRT154894 GNAS GNAS complex locus 2 4
MIRT200996 ZNF805 zinc finger protein 805 2 2
MIRT215729 C5ORF51 chromosome 5 open reading frame 51 2 10
MIRT235593 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT263250 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT317951 CDC5L cell division cycle 5 like 2 4
MIRT325572 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT354739 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT444552 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 4
MIRT446978 SUSD5 sushi domain containing 5 2 2
MIRT451036 ZNF610 zinc finger protein 610 2 2
MIRT451596 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT452025 NLRP6 NLR family pyrin domain containing 6 2 2
MIRT452594 CA6 carbonic anhydrase 6 2 2
MIRT452768 TCEA3 transcription elongation factor A3 2 4
MIRT452959 ZNF844 zinc finger protein 844 2 2
MIRT453191 ACSF2 acyl-CoA synthetase family member 2 2 2
MIRT453382 RHD Rh blood group D antigen 2 2
MIRT453685 CEBPD CCAAT/enhancer binding protein delta 2 2
MIRT455272 DDX39B DExD-box helicase 39B 2 8
MIRT455346 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT456494 SERAC1 serine active site containing 1 2 2
MIRT456585 NID1 nidogen 1 2 2
MIRT456888 DDA1 DET1 and DDB1 associated 1 2 2
MIRT457123 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT457852 ZNF324B zinc finger protein 324B 2 2
MIRT457987 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT459278 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT459625 SLC25A33 solute carrier family 25 member 33 2 2
MIRT459715 SGK494 uncharacterized serine/threonine-protein kinase SgK494 2 2
MIRT460057 RPL22L1 ribosomal protein L22 like 1 2 2
MIRT460182 UNK unkempt family zinc finger 2 6
MIRT460288 PDE11A phosphodiesterase 11A 2 2
MIRT460841 EGF epidermal growth factor 2 4
MIRT460860 TBC1D19 TBC1 domain family member 19 2 2
MIRT461519 EMC7 ER membrane protein complex subunit 7 2 2
MIRT461729 SLC27A1 solute carrier family 27 member 1 2 4
MIRT461821 SNAP23 synaptosome associated protein 23 2 2
MIRT462066 CCDC77 coiled-coil domain containing 77 2 4
MIRT462084 MSANTD2 Myb/SANT DNA binding domain containing 2 2 2
MIRT462508 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 10
MIRT464239 VCP valosin containing protein 2 2
MIRT465316 TRAF5 TNF receptor associated factor 5 2 2
MIRT466549 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467128 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 8
MIRT468091 SHCBP1 SHC binding and spindle associated 1 2 2
MIRT469630 RAD21 RAD21 cohesin complex component 2 6
MIRT471097 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472704 MYBL1 MYB proto-oncogene like 1 2 2
MIRT472830 MTMR10 myotubularin related protein 10 2 2
MIRT472872 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT472895 MTDH metadherin 2 2
MIRT473728 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT473859 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT474047 LONRF1 LON peptidase N-terminal domain and ring finger 1 2 2
MIRT474297 LAMC1 laminin subunit gamma 1 2 2
MIRT474658 KLF13 Kruppel like factor 13 2 2
MIRT475234 IKZF3 IKAROS family zinc finger 3 2 2
MIRT475500 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT475742 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT475793 HDGF heparin binding growth factor 2 2
MIRT477254 ERGIC2 ERGIC and golgi 2 2 2
MIRT478228 DDX52 DExD-box helicase 52 2 2
MIRT478393 DCTN5 dynactin subunit 5 2 2
MIRT478754 CS citrate synthase 2 2
MIRT478827 CRKL CRK like proto-oncogene, adaptor protein 2 4
MIRT480234 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT480597 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT484121 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT484689 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT486331 C11orf54 chromosome 11 open reading frame 54 2 4
MIRT488599 FAM3C family with sequence similarity 3 member C 2 8
MIRT488833 MRRF mitochondrial ribosome recycling factor 2 2
MIRT492523 RAB15 RAB15, member RAS oncogene family 2 4
MIRT493632 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT500026 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501075 SMAD7 SMAD family member 7 2 8
MIRT503094 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503336 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT505465 STMN1 stathmin 1 2 4
MIRT505726 SERTAD3 SERTA domain containing 3 2 4
MIRT509333 MS4A4A membrane spanning 4-domains A4A 2 2
MIRT509978 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 4
MIRT513068 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT513446 EMP1 epithelial membrane protein 1 2 6
MIRT513736 PSD3 pleckstrin and Sec7 domain containing 3 2 4
MIRT513996 CENPQ centromere protein Q 2 4
MIRT516538 MIXL1 Mix paired-like homeobox 2 2
MIRT517606 SAV1 salvador family WW domain containing protein 1 2 2
MIRT518064 CEP89 centrosomal protein 89 2 2
MIRT518119 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT518325 WDR92 WD repeat domain 92 2 2
MIRT519048 ABCB11 ATP binding cassette subfamily B member 11 2 2
MIRT520972 SPPL2A signal peptide peptidase like 2A 2 4
MIRT521359 RPL35A ribosomal protein L35a 2 2
MIRT523359 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT523801 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT524622 C7orf73 short transmembrane mitochondrial protein 1 2 2
MIRT525550 PHB2 prohibitin 2 2 4
MIRT529709 ZBTB49 zinc finger and BTB domain containing 49 2 2
MIRT531605 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT532387 UMPS uridine monophosphate synthetase 2 2
MIRT534468 SCD stearoyl-CoA desaturase 2 4
MIRT537546 ETNK1 ethanolamine kinase 1 2 2
MIRT541619 C11orf31 selenoprotein H 2 2
MIRT548380 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 4
MIRT549523 HDDC2 HD domain containing 2 2 2
MIRT549774 SOD2 superoxide dismutase 2 2 2
MIRT550578 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551498 CENPN centromere protein N 2 4
MIRT552301 ITGA3 integrin subunit alpha 3 2 2
MIRT555400 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT556399 LUC7L LUC7 like 2 2
MIRT557047 HOXB3 homeobox B3 2 2
MIRT558072 ERO1L endoplasmic reticulum oxidoreductase 1 alpha 1 2
MIRT559659 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT561239 ZNF354B zinc finger protein 354B 2 2
MIRT566899 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT568786 FAM120B family with sequence similarity 120B 2 2
MIRT574014 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT574885 Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 2 2
MIRT575243 Serping1 serine (or cysteine) peptidase inhibitor, clade G, member 1 2 2
MIRT576194 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576309 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576484 Lhx4 LIM homeobox protein 4 2 3
MIRT576646 Mill2 MHC I like leukocyte 2 1 1
MIRT576708 Kras Kirsten rat sarcoma viral oncogene homolog 2 2
MIRT576855 Socs6 suppressor of cytokine signaling 6 2 2
MIRT576950 Aldoa aldolase A, fructose-bisphosphate 2 2
MIRT617133 ZNF556 zinc finger protein 556 2 4
MIRT617928 ZNF783 zinc finger family member 783 2 2
MIRT618981 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT621100 SIX3 SIX homeobox 3 2 2
MIRT624537 BROX BRO1 domain and CAAX motif containing 2 2
MIRT625663 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT627059 DCTN6 dynactin subunit 6 2 2
MIRT628319 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT630859 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT632295 TMEM65 transmembrane protein 65 2 2
MIRT634115 ZNF207 zinc finger protein 207 2 2
MIRT634736 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT635655 NDST3 N-deacetylase and N-sulfotransferase 3 2 2
MIRT635772 PDCL3 phosducin like 3 2 2
MIRT635911 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT636365 OGFRL1 opioid growth factor receptor like 1 2 4
MIRT637251 GLRX2 glutaredoxin 2 2 2
MIRT638705 FZD4 frizzled class receptor 4 2 2
MIRT639640 PREX2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 2 2
MIRT639676 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT642267 SMIM17 small integral membrane protein 17 2 2
MIRT642372 ZNF581 zinc finger protein 581 2 2
MIRT643545 SLC25A17 solute carrier family 25 member 17 2 2
MIRT647994 PDE12 phosphodiesterase 12 2 2
MIRT649094 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT650993 ZNF770 zinc finger protein 770 2 2
MIRT651956 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT652977 SUN2 Sad1 and UNC84 domain containing 2 2 2
MIRT654389 RBM12B RNA binding motif protein 12B 2 2
MIRT655637 OLFML2A olfactomedin like 2A 2 2
MIRT655729 NRXN3 neurexin 3 2 2
MIRT658171 FCHSD1 FCH and double SH3 domains 1 2 2
MIRT660937 ACOX1 acyl-CoA oxidase 1 2 2
MIRT662112 CERKL ceramide kinase like 2 2
MIRT662302 MPV17L MPV17 mitochondrial inner membrane protein like 2 2
MIRT662993 TMEM59 transmembrane protein 59 2 2
MIRT663071 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT663704 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663864 MUC20 mucin 20, cell surface associated 2 2
MIRT665185 HAUS5 HAUS augmin like complex subunit 5 2 4
MIRT665402 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT665688 TNPO3 transportin 3 2 2
MIRT665795 TMEM170A transmembrane protein 170A 2 2
MIRT665847 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT666999 PDPN podoplanin 2 2
MIRT667598 LIPC lipase C, hepatic type 2 2
MIRT668576 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT670960 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT671187 ZNF891 zinc finger protein 891 2 2
MIRT671739 ZNF451 zinc finger protein 451 2 2
MIRT672745 ZNF585B zinc finger protein 585B 2 4
MIRT673446 ZNF583 zinc finger protein 583 2 2
MIRT679843 GPR75 G protein-coupled receptor 75 2 2
MIRT680556 ZNF584 zinc finger protein 584 2 2
MIRT680661 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT681285 RFC2 replication factor C subunit 2 2 2
MIRT683264 ZNF329 zinc finger protein 329 2 2
MIRT684519 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT685065 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685157 DTWD2 DTW domain containing 2 2 2
MIRT685168 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT685470 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT686001 NEK4 NIMA related kinase 4 2 2
MIRT687027 RNF24 ring finger protein 24 2 2
MIRT687543 MOB1B MOB kinase activator 1B 2 2
MIRT687592 MANEAL mannosidase endo-alpha like 2 2
MIRT687753 KIAA1328 KIAA1328 2 2
MIRT688050 GLUL glutamate-ammonia ligase 2 2
MIRT688374 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 2 2
MIRT688802 CBFA2T3 CBFA2/RUNX1 translocation partner 3 2 2
MIRT688957 ATXN3 ataxin 3 2 2
MIRT689281 C5AR2 complement component 5a receptor 2 2 2
MIRT689988 NNMT nicotinamide N-methyltransferase 2 2
MIRT689997 MMP17 matrix metallopeptidase 17 2 2
MIRT690014 LUZP2 leucine zipper protein 2 2 2
MIRT690161 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690379 ZSWIM7 zinc finger SWIM-type containing 7 2 2
MIRT690563 MICA MHC class I polypeptide-related sequence A 2 2
MIRT691891 EVC EvC ciliary complex subunit 1 2 2
MIRT693107 SCNM1 sodium channel modifier 1 2 2
MIRT693832 ZFP64 ZFP64 zinc finger protein 2 2
MIRT694105 ZNF446 zinc finger protein 446 2 2
MIRT694179 ZNF486 zinc finger protein 486 2 2
MIRT694475 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT694998 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT695031 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT695163 TCTN2 tectonic family member 2 2 2
MIRT695525 SLC25A34 solute carrier family 25 member 34 2 2
MIRT696067 ZNF264 zinc finger protein 264 2 2
MIRT696616 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT696661 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696705 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT697173 INMT indolethylamine N-methyltransferase 2 2
MIRT697303 ZNF652 zinc finger protein 652 2 2
MIRT697491 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT698657 TERF2 telomeric repeat binding factor 2 2 2
MIRT699042 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699185 SLX4IP SLX4 interacting protein 2 2
MIRT699598 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT700150 RNF115 ring finger protein 115 2 2
MIRT700720 PNO1 partner of NOB1 homolog 2 2
MIRT700870 PER2 period circadian clock 2 2 2
MIRT700912 PDXK pyridoxal kinase 2 2
MIRT701095 PAPOLG poly(A) polymerase gamma 2 2
MIRT701194 OTUD3 OTU deubiquitinase 3 2 2
MIRT702203 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT702272 LHX4 LIM homeobox 4 2 3
MIRT703125 GPRC5A G protein-coupled receptor class C group 5 member A 2 2
MIRT703252 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT703262 GNL3L G protein nucleolar 3 like 2 2
MIRT703440 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704321 DCUN1D5 defective in cullin neddylation 1 domain containing 5 2 2
MIRT704393 CTSS cathepsin S 2 2
MIRT704483 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT704880 CCSER2 coiled-coil serine rich protein 2 2 2
MIRT704926 CCDC36 coiled-coil domain containing 36 2 2
MIRT705175 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT706561 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT707048 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT711497 PGD phosphogluconate dehydrogenase 2 2
MIRT716644 EPGN epithelial mitogen 2 2
MIRT720083 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT722288 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT725468 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4433a Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4433a Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-4433a Vincristine 5978 approved resistant cell line (W1)
hsa-mir-4433a Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4433a-3p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Pancreatic Cancer cell line (BxPC-3)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CIS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (mitochondrial RNA)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-4433a-3p Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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