pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol AMER3   
Synonyms FAM123C
Description APC membrane recruitment protein 3
Transcript NM_001105193   
Other Transcripts NM_001105194 , NM_001105195 , NM_152698   
Expression
Putative miRNA Targets on AMER3
3'UTR of AMER3
(miRNA target sites are highlighted)
>AMER3|NM_001105193|3'UTR
   1 GACAGGCTCACATGCACCAGGAACTGCATGTGTCTTCATGACCACTTTCAGGAGAGCCTAGGACTCAAATCTCTATCTTT
  81 TGTCCCTGATGTGGGGACTGTGTTGGGGGTGGGGGGTGGCAGGACTCAGGCATGCAGAGGGTAGCATGTTCATGTGGAGG
 161 CATCCTTGCCTGAACCCACCAGCTCAGGCAGCCCACCGCCAAAGACAGCGCGAAGCTGCAACCACCTAGCTGCTCCTCAT
 241 GCAGGGGCTGGAGAGAGGGGCTAGGGCTTGAAACTGAGGGGGAGAAAGAGCTGCACATTGTAAATGGGAAGCAGAGAGCC
 321 AATGAGTCTGCCTGGGATGTGTGTGAATCCCAAAAGACGCAATCCCAAATGCCATAGTCCCAAGTGTTGAGAATCCAAAA
 401 TATTAAAATTACTATACTCTAAAATCCGAAAATCACAATCCCAAAAGATCTAAATCCTGGAAATATAATTCTGGGAAAAT
 481 TTTTTTTTAATTTTTTAAAAGATACTTACATTTTAAAAGGATTTATTTGAGAAACATAAAAACACAACAGAACACATCAG
 561 CCACTTCACACAATAAAATAGGCAATAATACATATTTTTGGAAGCATAAACAGGTATACAGACAGTTACACCGGTGTGAG
 641 TTATTAGCAGACAAACTATATTCATGAAGAAATAGGTCAAAATGGGAAATGTATACATGCATGTCACTATGCTTGGTAAT
 721 TGTGTGCACCTCGCTTTATACTTGCAGTCATATCATGACCAACAACCTAAGTCTTTTGACGAAGTCAATCTATGATGCGT
 801 CACCACCACACACACAGTTGCCCAAAGAGCGGAGATGGCAAGAACTTTCATCTCTCACAATTGCAGATGTACAAAAATTA
 881 CATCTCTTCATTTATTGAGGAAGTTTTGACGTTTTTATACACACGCACAATGCTTACACACACAGTCAACCTGGGATGCC
 961 GGCAGGGTGGCTCAGGACGAAAGCCTCAGGACCCAGGAGGGCCATGGGTGTAAGTTCCAGAGTCCAAAGGCCAGCGAGCC
1041 TGAAGCTCTGATGTCAAGGCAGTGGAAGAAAAGCCTGTCCCAGCTCTGAGAGAGAGACCAGTTTGCCTTCTTTATTTGTT
1121 CTCCCTGGGCCTCAGCAGATTGAATGCTGCCCACCAACATTGAGGGTGGATCTTCCACACCTAGGCCCCTCAGATTCACA
1201 CACTAATCTCTGGAAACACCTCACAGACATGCCCAGAATAATGATCTCCCAGGTCTCTAGGTATCCCTTAACCCAGTCGA
1281 GTTCACACCCAAAATGAAGTCCACAGGTCCACCCCTTGTCAACTTGGCATCCATCCGCATCCCCTTAAACCATTTTCAGT
1361 CTCCAAATAAAGCCCCAAGCAAGGCAGTAGCTCCACCTAACATGATGCAACTATCCCGGGATTGTGATTTTTAAGACTTT
1441 AGATGTTAGGGATTTGAAACTTTAGAGATTTGCGTCTTTCAGTATTTCAATGTTGGGGACCAGTGTTTGGGATTATGTCT
1521 TTTAGAATAATGATCCAAACTTGTGTGAGGACTGTGAGGCTCAGGGTGGGAGACGGGTGGGGGAGCCGACCTTAGGAGGG
1601 CCCACTGAACCGGCCTCAATCTGGCCCCAGTCTGGCCTACTCGCTGCCCCAGGACAGGTGGCTACAACATGCTGAGGGCC
1681 TGAAGGGCGTCCCCTCAGGAACATTGTATTACTGTTTTGTGTTGCTATAAAGGATAACTGTGACCAGATCATTTATAAAG
1761 TAAAGAAGTTTATTTGGCTTGTAATTCTGCAGGTGTAGAGGCATGGCACCAGCATCTGCTGCTGCTTTTTTTTTTTTTTT
1841 TTTTTTTTTTGAGACAGGGTCTCACTTTGTTGCCCAGGTGGGAATGGGAGTGCAGTGGCACAGTCTTGGCTCACTGCAGC
1921 CTCTACCTCCTGGGCTCAAGCAGTCCTCCCACCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGTGCGCCACCTTGCCTG
2001 GCTAATTTTTCTATTTTTTTGTAGAGACGGGTTTTCGCCATGTTGCCTCAGCTAAAATGTCTCAAAATCTCCTCAACTAA
2081 AATGTCTCAAAATCTCAGCCTCCCACAGTGCTGGATGACAGGAGTGAGCCAGCCAGCATCATGCATCCCTGTGCGCCCTG
2161 CCAGGGCTGGCGGGACCCTCCCACCCTTGTTGATGGGCAGTGCTAGATTATTTGTCACGAATCATCCCCTACAAACAATG
2241 ATTTCCCTCCGCTTGCACTCTCTAACTAGAGCCATGGATGGCCAAATGCTTTTTGGGAAGAAGCCAATGGATTCTCCTCG
2321 GCTCTGCCTGCAAGTAACAAAGGCTTTTGACTCCACTCCCTCCACGCTGTCAGATCGCCATTCCCCTTCAGGAAAACTTC
2401 GAATGGGGCTGTGGACCTCACTCCCCAAAATGTCACAACACATGTGCAGCACCCCGACATTCAGAACCATGAAGGGAGAA
2481 GGTGGCTGGTGTCTGTAGGAGGGACAGGTGTCCGTCCTGGGCCAGTGTCAGGCCAGCAGGTGCAGGGACAGATGGGCCAT
2561 CCACATTCTCCAAGATTAGCTTCTACCTCAACCAGCACACCTCAGCAAGATGCCAGGATTGGGCTCCACAGGCAGCCATG
2641 AAATGGGTTTCTGGAGGAAAGATCAGCACAGGAAAAGGGGTCAGTCAGGTCGCAGGCAAAGTGCTAGGGAAATCCCATCT
2721 CATGCAGAGCTCCCACCAAGAGGAGCGTGAGTTGTGCTGTCCTGGCTCGAGAAGAAGGCAGCACAGGATCTGTAGCTGAG
2801 GGTGGCCCTCCCACCAGGGGACGCTGGTCAGTGCCTCTCCTGACTGCCTGACGCTTGGTCTCCGGTGGCCCTCTCTCACC
2881 AGGGCTCCCTGAGGCCTGCTGCAAGCAGGACACAGGCTGCACATCACAGGTTCCAAAGTGTGCAGCAAGGCTTCTGACCA
2961 GGCCCGTCCAGATCTGGAGCCCCTGTGGAGCCACATCTGAGCCCTCCTCCCAAGACTCACACACAGGACCACAGCAGCAT
3041 CACTGAGCCGAGCTGGGGGCAAGTTTCACCAGATTCGCTTACCTGATCCTTGCATCAACCTCAATGCAGTTGTCAGCCCC
3121 ATTTTTCAGACCTGGACACGGAGGCACAGGGTGCTGGTGTGACTTGCCCACAGTTATTAGTGTGTGAGGTGATGGGTTTT
3201 GTCCCGTCCCAGCTCCAAAGGCCCTGCTCTTCCTCAAGCTCCAGAACCTCTCACTGAGCTCCTGCAGTGAAGTCCCCCCT
3281 CAGAGCCCTCAGCCCTTCCTGCTTTCAGGCTCCAGATGTCAGAGCACCCTTGGGTGCCAGCCACAAGTGGCCCTCCAGCA
3361 GGCTGAGCACCCAGGGGGAGGCTGCCCTGACTCAACCCCAGCCTGGGGCTTTGTGCTGCACCTGAGGGAGTAGCCGCTCT
3441 GTAAATCCTTGTTGAAAGAATGAAGTGTCAAAAGGT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGUCGG--UUGAGUGUCACGUCu 5'
            |||| :  :| | : ||||||| 
Target 5' gcCCAGGTGGGAATGGGAGTGCAGt 3'
1872 - 1896 151.00 -16.50
2
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|||||  | |||||||| | 
Target 5' tcTCAGCC-TCCCACAGTGCTGg 3'
2093 - 2114 140.00 -24.40
3
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            | :||||:  || :|||||| 
Target 5' gtCAGGCCAG--CA-GGTGCAGg 3'
2527 - 2546 140.00 -21.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31484518 55 COSMIC
COSN30503571 75 COSMIC
COSN9859015 95 COSMIC
COSN26958133 105 COSMIC
COSN31533429 114 COSMIC
COSN23012712 117 COSMIC
COSN31592931 136 COSMIC
COSN30112528 198 COSMIC
COSN30141682 199 COSMIC
COSN30134282 211 COSMIC
COSN31479812 213 COSMIC
COSN29362766 242 COSMIC
COSN15623114 247 COSMIC
COSN15623115 261 COSMIC
COSN22712899 295 COSMIC
COSN30117794 342 COSMIC
COSN31488341 390 COSMIC
COSN16523050 480 COSMIC
COSN30144154 480 COSMIC
COSN30123396 489 COSMIC
COSN30133252 505 COSMIC
COSN30114204 512 COSMIC
COSN31479892 530 COSMIC
COSN31522954 542 COSMIC
COSN30530004 597 COSMIC
COSN30137232 634 COSMIC
COSN21954938 658 COSMIC
COSN31488900 664 COSMIC
COSN5480925 721 COSMIC
COSN31548956 768 COSMIC
COSN23012713 778 COSMIC
COSN22554039 782 COSMIC
COSN30139402 800 COSMIC
COSN31592932 839 COSMIC
COSN30129311 893 COSMIC
COSN30527609 913 COSMIC
COSN22849789 931 COSMIC
COSN31483722 959 COSMIC
COSN24299454 979 COSMIC
COSN26637291 980 COSMIC
COSN25101691 990 COSMIC
COSN31551026 990 COSMIC
COSN15623116 1001 COSMIC
COSN31588953 1036 COSMIC
COSN217008 1074 COSMIC
COSN15623117 1089 COSMIC
COSN19475614 1089 COSMIC
COSN6209010 1143 COSMIC
COSN24931859 1145 COSMIC
COSN15623118 1188 COSMIC
COSN30161093 1194 COSMIC
COSN9859016 1269 COSMIC
COSN26958134 1291 COSMIC
COSN26601545 1337 COSMIC
COSN15623119 1344 COSMIC
COSN15623120 1376 COSMIC
COSN15623121 1416 COSMIC
COSN19286530 1419 COSMIC
COSN30123378 1475 COSMIC
COSN30123601 1477 COSMIC
COSN31570527 1489 COSMIC
COSN26635933 1567 COSMIC
COSN15623122 1571 COSMIC
COSN15623123 1599 COSMIC
COSN15623124 1608 COSMIC
COSN30533588 1631 COSMIC
COSN31585938 1689 COSMIC
COSN30529996 1690 COSMIC
COSN31535041 1711 COSMIC
COSN31549385 1726 COSMIC
COSN26580556 1771 COSMIC
COSN1787791 1969 COSMIC
COSN9859017 2023 COSMIC
COSN30512194 2056 COSMIC
COSN15623125 2072 COSMIC
COSN30127476 2119 COSMIC
COSN31486068 2126 COSMIC
COSN1787792 2127 COSMIC
COSN1787793 2128 COSMIC
COSN30534403 2152 COSMIC
COSN31481474 2155 COSMIC
COSN30122222 2171 COSMIC
COSN31528908 2172 COSMIC
COSN29467841 2174 COSMIC
COSN15623126 2188 COSMIC
COSN15623127 2246 COSMIC
COSN30114545 2315 COSMIC
COSN30526543 2352 COSMIC
COSN16172794 2354 COSMIC
COSN6418523 2358 COSMIC
COSN5480926 2378 COSMIC
COSN30129282 2401 COSMIC
COSN5480927 2409 COSMIC
COSN26958135 2451 COSMIC
COSN26508352 2472 COSMIC
COSN26288847 2557 COSMIC
COSN31490894 2673 COSMIC
COSN30114772 2683 COSMIC
COSN31562099 2748 COSMIC
COSN31517981 2850 COSMIC
COSN30144134 2853 COSMIC
COSN15623128 2863 COSMIC
COSN8607338 2965 COSMIC
COSN29241328 3007 COSMIC
COSN30136678 3015 COSMIC
COSN28637768 3030 COSMIC
COSN31480977 3046 COSMIC
COSN2494469 3066 COSMIC
COSN30120492 3077 COSMIC
COSN31565508 3078 COSMIC
COSN31524404 3104 COSMIC
COSN7337527 3141 COSMIC
COSN26677308 3167 COSMIC
COSN28728680 3207 COSMIC
COSN25848790 3248 COSMIC
COSN26678228 3270 COSMIC
COSN31544253 3296 COSMIC
COSN29468530 3310 COSMIC
COSN30542000 3367 COSMIC
COSN15765698 3368 COSMIC
COSN30115471 3436 COSMIC
COSN31961715 3440 COSMIC
COSN15623129 3448 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs770692797 2 dbSNP
rs1167785814 4 dbSNP
rs1393721427 9 dbSNP
rs1406562823 10 dbSNP
rs1007438294 13 dbSNP
rs1393254828 15 dbSNP
rs1438521298 20 dbSNP
rs374628084 22 dbSNP
rs763348029 25 dbSNP
rs376564749 27 dbSNP
rs752390736 29 dbSNP
rs1337564156 31 dbSNP
rs996162497 33 dbSNP
rs755688037 35 dbSNP
rs545120643 36 dbSNP
rs1274091716 42 dbSNP
rs1468193084 44 dbSNP
rs1212282547 49 dbSNP
rs866389818 50 dbSNP
rs1250305379 51 dbSNP
rs1412689008 57 dbSNP
rs1362237811 65 dbSNP
rs1347656458 69 dbSNP
rs1168360465 70 dbSNP
rs536424655 76 dbSNP
rs1463100052 84 dbSNP
rs866707829 87 dbSNP
rs955443428 89 dbSNP
rs992207220 102 dbSNP
rs916643340 108 dbSNP
rs1177219094 110 dbSNP
rs1259155627 111 dbSNP
rs969261910 112 dbSNP
rs909156295 116 dbSNP
rs986672310 117 dbSNP
rs1336576192 120 dbSNP
rs1198024671 121 dbSNP
rs1479932275 122 dbSNP
rs940602577 123 dbSNP
rs1031885517 128 dbSNP
rs1036245675 129 dbSNP
rs548705626 142 dbSNP
rs1393454836 147 dbSNP
rs932949786 150 dbSNP
rs989895161 151 dbSNP
rs1242353600 152 dbSNP
rs570125982 153 dbSNP
rs150568452 154 dbSNP
rs914303194 155 dbSNP
rs948417775 161 dbSNP
rs980146041 163 dbSNP
rs1394238533 167 dbSNP
rs888847460 183 dbSNP
rs376515196 187 dbSNP
rs547993205 187 dbSNP
rs928920537 198 dbSNP
rs904140782 199 dbSNP
rs938893072 204 dbSNP
rs1031176778 207 dbSNP
rs1480854315 208 dbSNP
rs760837445 209 dbSNP
rs1238089654 210 dbSNP
rs1047898736 211 dbSNP
rs1469830681 212 dbSNP
rs1013512190 213 dbSNP
rs1248747857 215 dbSNP
rs1209418320 219 dbSNP
rs1351631712 220 dbSNP
rs1023749687 222 dbSNP
rs1200316162 224 dbSNP
rs1374583779 231 dbSNP
rs1431551800 233 dbSNP
rs558656526 236 dbSNP
rs776222973 240 dbSNP
rs1395970315 242 dbSNP
rs942173783 244 dbSNP
rs1404441242 250 dbSNP
rs753793590 251 dbSNP
rs769366218 251 dbSNP
rs1160712217 259 dbSNP
rs961864903 262 dbSNP
rs577500223 263 dbSNP
rs971993286 276 dbSNP
rs1194764892 278 dbSNP
rs535023389 279 dbSNP
rs553221083 280 dbSNP
rs900576297 282 dbSNP
rs574693020 285 dbSNP
rs541977572 292 dbSNP
rs560689353 298 dbSNP
rs1234988219 300 dbSNP
rs1042780623 308 dbSNP
rs575730988 312 dbSNP
rs904024158 317 dbSNP
rs761947942 318 dbSNP
rs765287605 319 dbSNP
rs1319812026 323 dbSNP
rs1221112373 326 dbSNP
rs1418292139 330 dbSNP
rs1360236968 331 dbSNP
rs543435294 336 dbSNP
rs1052651575 340 dbSNP
rs1437194622 344 dbSNP
rs868604788 352 dbSNP
rs188305799 359 dbSNP
rs1024054799 360 dbSNP
rs192965060 361 dbSNP
rs1206437331 366 dbSNP
rs1262253448 375 dbSNP
rs1006719897 380 dbSNP
rs1249402300 381 dbSNP
rs1211328320 385 dbSNP
rs774920509 387 dbSNP
rs1218138740 404 dbSNP
rs1339431515 414 dbSNP
rs971875642 415 dbSNP
rs764441082 418 dbSNP
rs1397807197 428 dbSNP
rs547397085 429 dbSNP
rs1313928788 438 dbSNP
rs762222729 441 dbSNP
rs1416942387 448 dbSNP
rs954607104 451 dbSNP
rs1175925343 457 dbSNP
rs1410625167 461 dbSNP
rs1421800572 465 dbSNP
rs1168582682 467 dbSNP
rs1271261962 473 dbSNP
rs752062215 476 dbSNP
rs866080962 476 dbSNP
rs1477657763 480 dbSNP
rs372817775 480 dbSNP
rs910219019 480 dbSNP
rs947035503 481 dbSNP
rs978939130 484 dbSNP
rs112628043 489 dbSNP
rs1209281034 490 dbSNP
rs529924927 497 dbSNP
rs548397382 499 dbSNP
rs1430803184 501 dbSNP
rs984149651 503 dbSNP
rs908107975 505 dbSNP
rs1216237608 509 dbSNP
rs942206380 510 dbSNP
rs1316932609 512 dbSNP
rs1293451718 521 dbSNP
rs1235560839 537 dbSNP
rs1377365075 541 dbSNP
rs1302613181 542 dbSNP
rs1443610599 543 dbSNP
rs918209384 544 dbSNP
rs1329460454 546 dbSNP
rs1367018667 547 dbSNP
rs139584432 550 dbSNP
rs537133403 557 dbSNP
rs1292423027 561 dbSNP
rs1362661992 562 dbSNP
rs905209796 563 dbSNP
rs1425362246 566 dbSNP
rs777902535 568 dbSNP
rs1293287119 573 dbSNP
rs1181041032 580 dbSNP
rs932022650 582 dbSNP
rs750915672 601 dbSNP
rs1470503608 613 dbSNP
rs1341230993 614 dbSNP
rs1234475737 617 dbSNP
rs1196209378 618 dbSNP
rs1456898433 620 dbSNP
rs1273450241 628 dbSNP
rs1006192166 630 dbSNP
rs1246392486 632 dbSNP
rs768026863 633 dbSNP
rs1051846975 634 dbSNP
rs770591146 635 dbSNP
rs1221007167 637 dbSNP
rs890489963 645 dbSNP
rs114599726 648 dbSNP
rs1307625728 648 dbSNP
rs993368443 649 dbSNP
rs1395251476 651 dbSNP
rs1327985159 654 dbSNP
rs1456621815 656 dbSNP
rs1030160947 659 dbSNP
rs570778465 660 dbSNP
rs1486855452 664 dbSNP
rs878975439 669 dbSNP
rs750644501 674 dbSNP
rs1176645549 676 dbSNP
rs1011382169 678 dbSNP
rs1017499941 685 dbSNP
rs1445422439 690 dbSNP
rs1487333650 697 dbSNP
rs1264439151 698 dbSNP
rs1021374402 701 dbSNP
rs968805251 703 dbSNP
rs969841260 710 dbSNP
rs1001724999 720 dbSNP
rs1240128516 724 dbSNP
rs1035442569 733 dbSNP
rs1385091162 734 dbSNP
rs959999280 734 dbSNP
rs759011848 736 dbSNP
rs1367172099 739 dbSNP
rs983126398 742 dbSNP
rs908139173 746 dbSNP
rs534970431 757 dbSNP
rs1362273982 762 dbSNP
rs1156579437 764 dbSNP
rs963602291 767 dbSNP
rs973573308 773 dbSNP
rs922063206 774 dbSNP
rs1395597061 781 dbSNP
rs918094921 782 dbSNP
rs1317914233 789 dbSNP
rs79572143 793 dbSNP
rs1266271869 794 dbSNP
rs1186698564 796 dbSNP
rs1489056578 799 dbSNP
rs1052303685 800 dbSNP
rs1045738782 801 dbSNP
rs1349311817 802 dbSNP
rs1283003568 807 dbSNP
rs911965903 817 dbSNP
rs1311625947 820 dbSNP
rs942049537 831 dbSNP
rs149688965 832 dbSNP
rs147389438 837 dbSNP
rs1296176038 838 dbSNP
rs753934770 841 dbSNP
rs897945369 853 dbSNP
rs755092433 861 dbSNP
rs139453982 864 dbSNP
rs1011413458 865 dbSNP
rs576121517 867 dbSNP
rs1376627962 879 dbSNP
rs375827087 887 dbSNP
rs543168168 892 dbSNP
rs1042947040 896 dbSNP
rs1421007593 899 dbSNP
rs1193396022 905 dbSNP
rs558308341 911 dbSNP
rs145033686 912 dbSNP
rs1035877358 913 dbSNP
rs1199290261 918 dbSNP
rs959790346 921 dbSNP
rs1252033648 922 dbSNP
rs147946845 925 dbSNP
rs375918174 926 dbSNP
rs963632751 927 dbSNP
rs1277730751 930 dbSNP
rs973687491 931 dbSNP
rs1355799475 932 dbSNP
rs1314583568 936 dbSNP
rs543786171 938 dbSNP
rs922187493 939 dbSNP
rs1401410236 940 dbSNP
rs953700163 942 dbSNP
rs987626000 944 dbSNP
rs911981242 945 dbSNP
rs1397709237 953 dbSNP
rs1169451092 955 dbSNP
rs935389661 961 dbSNP
rs1387196590 962 dbSNP
rs1185860572 964 dbSNP
rs1000310657 967 dbSNP
rs1200607384 968 dbSNP
rs1031292239 969 dbSNP
rs1257692065 970 dbSNP
rs1214607660 971 dbSNP
rs988109580 979 dbSNP
rs184756238 980 dbSNP
rs1242329468 988 dbSNP
rs946717475 993 dbSNP
rs916966943 998 dbSNP
rs1338315768 999 dbSNP
rs1042978241 1007 dbSNP
rs1446888196 1008 dbSNP
rs905768433 1009 dbSNP
rs112770393 1011 dbSNP
rs1461699828 1013 dbSNP
rs1280463554 1018 dbSNP
rs1392412330 1031 dbSNP
rs1056944124 1036 dbSNP
rs371547873 1043 dbSNP
rs926907099 1046 dbSNP
rs781010236 1047 dbSNP
rs1004603351 1050 dbSNP
rs1268054876 1056 dbSNP
rs1244461543 1057 dbSNP
rs973617463 1064 dbSNP
rs1014677323 1074 dbSNP
rs548436536 1076 dbSNP
rs747826848 1077 dbSNP
rs1453601758 1078 dbSNP
rs529524341 1082 dbSNP
rs898852952 1084 dbSNP
rs1261391682 1085 dbSNP
rs1207849453 1095 dbSNP
rs919260747 1097 dbSNP
rs1286434521 1099 dbSNP
rs1242275166 1100 dbSNP
rs994490351 1105 dbSNP
rs1442024258 1107 dbSNP
rs1029670290 1108 dbSNP
rs929269709 1111 dbSNP
rs1051862752 1115 dbSNP
rs563485985 1124 dbSNP
rs953630512 1126 dbSNP
rs1321129189 1127 dbSNP
rs530699769 1130 dbSNP
rs1386587506 1131 dbSNP
rs1386194786 1133 dbSNP
rs866920188 1135 dbSNP
rs1160795152 1146 dbSNP
rs1019078965 1149 dbSNP
rs1411134081 1150 dbSNP
rs1174359064 1153 dbSNP
rs1479013181 1160 dbSNP
rs943221052 1161 dbSNP
rs1447764364 1163 dbSNP
rs272099 1167 dbSNP
rs1177930084 1173 dbSNP
rs988224236 1180 dbSNP
rs149011844 1185 dbSNP
rs1219336563 1187 dbSNP
rs946748702 1195 dbSNP
rs1000126975 1196 dbSNP
rs980711407 1204 dbSNP
rs6720436 1205 dbSNP
rs373103562 1211 dbSNP
rs1340741366 1234 dbSNP
rs1057372678 1235 dbSNP
rs769399268 1239 dbSNP
rs1179441978 1243 dbSNP
rs1013860658 1247 dbSNP
rs1335404620 1260 dbSNP
rs1408382185 1279 dbSNP
rs1172062037 1280 dbSNP
rs1475896145 1287 dbSNP
rs1425979137 1288 dbSNP
rs1195579053 1290 dbSNP
rs1487163048 1291 dbSNP
rs1262413560 1295 dbSNP
rs1024030024 1299 dbSNP
rs1444035931 1300 dbSNP
rs1275976926 1301 dbSNP
rs1199376838 1302 dbSNP
rs1318176401 1302 dbSNP
rs940505770 1303 dbSNP
rs546584575 1307 dbSNP
rs1225929501 1308 dbSNP
rs981381686 1321 dbSNP
rs1285117914 1328 dbSNP
rs1450898527 1332 dbSNP
rs72854997 1334 dbSNP
rs898883781 1336 dbSNP
rs535733191 1337 dbSNP
rs1275378509 1338 dbSNP
rs1477606200 1341 dbSNP
rs1482231220 1342 dbSNP
rs1182231781 1344 dbSNP
rs1028636122 1353 dbSNP
rs557197652 1354 dbSNP
rs376347436 1368 dbSNP
rs1186234118 1374 dbSNP
rs539978800 1377 dbSNP
rs555768073 1380 dbSNP
rs1375372673 1386 dbSNP
rs1196410768 1390 dbSNP
rs1477410490 1390 dbSNP
rs1316912528 1391 dbSNP
rs559476225 1403 dbSNP
rs541075984 1404 dbSNP
rs11893473 1406 dbSNP
rs1377626195 1407 dbSNP
rs988260162 1414 dbSNP
rs1022343736 1416 dbSNP
rs1379272214 1418 dbSNP
rs188036524 1419 dbSNP
rs935802382 1420 dbSNP
rs191328612 1421 dbSNP
rs926613766 1423 dbSNP
rs768305119 1425 dbSNP
rs1491497088 1428 dbSNP
rs1491134079 1429 dbSNP
rs891693977 1429 dbSNP
rs1134119 1441 dbSNP
rs1023917350 1443 dbSNP
rs116465862 1450 dbSNP
rs545969001 1461 dbSNP
rs775285844 1461 dbSNP
rs1320241052 1464 dbSNP
rs917165799 1464 dbSNP
rs1289587852 1466 dbSNP
rs1272052318 1468 dbSNP
rs994992222 1474 dbSNP
rs183474755 1475 dbSNP
rs1273592582 1480 dbSNP
rs528565969 1483 dbSNP
rs920362592 1492 dbSNP
rs1490456198 1494 dbSNP
rs1295470372 1501 dbSNP
rs1211496214 1503 dbSNP
rs950942851 1511 dbSNP
rs930351690 1513 dbSNP
rs1162686650 1517 dbSNP
rs1420290236 1518 dbSNP
rs1050586734 1528 dbSNP
rs1382029050 1536 dbSNP
rs762449987 1540 dbSNP
rs189411522 1541 dbSNP
rs1425457465 1551 dbSNP
rs1192616804 1554 dbSNP
rs1487282833 1563 dbSNP
rs1268706526 1565 dbSNP
rs965033269 1567 dbSNP
rs1040663535 1575 dbSNP
rs1284422349 1576 dbSNP
rs1312801981 1578 dbSNP
rs974875531 1580 dbSNP
rs892684032 1588 dbSNP
rs1009692941 1589 dbSNP
rs926015770 1594 dbSNP
rs935858996 1602 dbSNP
rs774073502 1607 dbSNP
rs1296213311 1610 dbSNP
rs759329173 1612 dbSNP
rs1022394562 1618 dbSNP
rs1377737515 1620 dbSNP
rs968115402 1627 dbSNP
rs1002319671 1630 dbSNP
rs949978358 1634 dbSNP
rs1034158791 1637 dbSNP
rs1046020092 1643 dbSNP
rs568130765 1644 dbSNP
rs529221824 1645 dbSNP
rs1205113530 1651 dbSNP
rs1161891826 1653 dbSNP
rs1390621861 1657 dbSNP
rs917175647 1670 dbSNP
rs1257889829 1675 dbSNP
rs766447761 1680 dbSNP
rs1311829052 1687 dbSNP
rs1279027884 1688 dbSNP
rs1219032211 1689 dbSNP
rs376187953 1690 dbSNP
rs1381644124 1695 dbSNP
rs995043146 1697 dbSNP
rs1026479279 1700 dbSNP
rs950828662 1702 dbSNP
rs192362239 1705 dbSNP
rs539688412 1707 dbSNP
rs1019592787 1720 dbSNP
rs1466847395 1725 dbSNP
rs930455295 1728 dbSNP
rs1421986662 1745 dbSNP
rs964768913 1748 dbSNP
rs1424912639 1762 dbSNP
rs975129874 1769 dbSNP
rs926096646 1790 dbSNP
rs1460887752 1791 dbSNP
rs1050226374 1796 dbSNP
rs1263506462 1800 dbSNP
rs867779415 1801 dbSNP
rs1200802099 1803 dbSNP
rs558329253 1807 dbSNP
rs570486091 1808 dbSNP
rs910285808 1810 dbSNP
rs1355513345 1816 dbSNP
rs534721172 1817 dbSNP
rs1226347410 1820 dbSNP
rs988822088 1822 dbSNP
rs1314728559 1823 dbSNP
rs1045662788 1826 dbSNP
rs1163343277 1826 dbSNP
rs1167715678 1826 dbSNP
rs1195029926 1826 dbSNP
rs1238931555 1826 dbSNP
rs1239037692 1826 dbSNP
rs1370736561 1826 dbSNP
rs1444513588 1826 dbSNP
rs1444540892 1826 dbSNP
rs1458691724 1826 dbSNP
rs1466911591 1826 dbSNP
rs913069900 1826 dbSNP
rs949862554 1826 dbSNP
rs1249288721 1827 dbSNP
rs1243743280 1848 dbSNP
rs1463167538 1848 dbSNP
rs1187464652 1849 dbSNP
rs1040403877 1850 dbSNP
rs1448281450 1850 dbSNP
rs1333646939 1851 dbSNP
rs1354940342 1852 dbSNP
rs1185832099 1853 dbSNP
rs1368286726 1854 dbSNP
rs553073268 1857 dbSNP
rs185430418 1859 dbSNP
rs1160813675 1860 dbSNP
rs1386458661 1861 dbSNP
rs1456770909 1870 dbSNP
rs937046964 1879 dbSNP
rs1437852074 1881 dbSNP
rs1363470179 1884 dbSNP
rs1038442464 1885 dbSNP
rs1453518653 1887 dbSNP
rs892737701 1888 dbSNP
rs754969000 1920 dbSNP
rs1219967217 1922 dbSNP
rs1490171252 1930 dbSNP
rs993928841 1936 dbSNP
rs1241729745 1955 dbSNP
rs541805236 1959 dbSNP
rs1278424747 1961 dbSNP
rs1337536799 1971 dbSNP
rs1332460227 1974 dbSNP
rs1281777475 1975 dbSNP
rs1046810132 1984 dbSNP
rs115941045 1985 dbSNP
rs1043941547 1987 dbSNP
rs751471740 1988 dbSNP
rs757238938 1989 dbSNP
rs272100 2000 dbSNP
rs545706558 2001 dbSNP
rs1327069717 2011 dbSNP
rs35092967 2011 dbSNP
rs996223896 2017 dbSNP
rs1033432310 2023 dbSNP
rs957328284 2029 dbSNP
rs961037694 2030 dbSNP
rs114320493 2037 dbSNP
rs1218768517 2038 dbSNP
rs971234608 2042 dbSNP
rs1283027092 2045 dbSNP
rs1179780818 2046 dbSNP
rs1255839266 2052 dbSNP
rs1015576341 2058 dbSNP
rs766585584 2062 dbSNP
rs1420055925 2069 dbSNP
rs1184870654 2071 dbSNP
rs961357240 2073 dbSNP
rs528237698 2076 dbSNP
rs745581923 2078 dbSNP
rs1027570156 2084 dbSNP
rs540349893 2088 dbSNP
rs1326350055 2089 dbSNP
rs951947073 2090 dbSNP
rs986334597 2101 dbSNP
rs937248205 2103 dbSNP
rs1404229853 2104 dbSNP
rs1176032508 2106 dbSNP
rs973986315 2120 dbSNP
rs1424150578 2126 dbSNP
rs919596991 2132 dbSNP
rs189907685 2134 dbSNP
rs1241391055 2144 dbSNP
rs1391750925 2145 dbSNP
rs1187665852 2153 dbSNP
rs529261677 2155 dbSNP
rs550946326 2156 dbSNP
rs181564389 2161 dbSNP
rs1260465483 2162 dbSNP
rs944931421 2165 dbSNP
rs945023800 2173 dbSNP
rs186378846 2178 dbSNP
rs1450782437 2187 dbSNP
rs904071586 2190 dbSNP
rs201264131 2193 dbSNP
rs1402645740 2197 dbSNP
rs1447885911 2197 dbSNP
rs1055679702 2199 dbSNP
rs1207505683 2213 dbSNP
rs1172287605 2219 dbSNP
rs996834338 2220 dbSNP
rs1255046779 2222 dbSNP
rs1480787740 2224 dbSNP
rs896583674 2228 dbSNP
rs893151202 2229 dbSNP
rs1240786562 2235 dbSNP
rs1014117818 2237 dbSNP
rs567074415 2240 dbSNP
rs1457934979 2242 dbSNP
rs1239552539 2245 dbSNP
rs1202907990 2246 dbSNP
rs1307329908 2247 dbSNP
rs1291012735 2251 dbSNP
rs1250114334 2252 dbSNP
rs1010178658 2254 dbSNP
rs1020350398 2257 dbSNP
rs1240893353 2268 dbSNP
rs971452471 2273 dbSNP
rs1296625594 2276 dbSNP
rs1015669686 2277 dbSNP
rs1427285195 2284 dbSNP
rs1441709054 2286 dbSNP
rs1353755170 2289 dbSNP
rs749002027 2290 dbSNP
rs1426543217 2295 dbSNP
rs981332108 2297 dbSNP
rs1162387372 2300 dbSNP
rs1034604956 2305 dbSNP
rs897200325 2308 dbSNP
rs995499808 2309 dbSNP
rs1175529326 2320 dbSNP
rs1373841098 2321 dbSNP
rs370083910 2323 dbSNP
rs1309580710 2336 dbSNP
rs1368498027 2340 dbSNP
rs768251825 2343 dbSNP
rs546724155 2345 dbSNP
rs1409079329 2348 dbSNP
rs952015638 2353 dbSNP
rs761987307 2354 dbSNP
rs1369723683 2357 dbSNP
rs982440746 2358 dbSNP
rs151084910 2366 dbSNP
rs912347666 2367 dbSNP
rs985999908 2374 dbSNP
rs1363659278 2377 dbSNP
rs1216955045 2378 dbSNP
rs535489246 2381 dbSNP
rs1346515837 2396 dbSNP
rs141064790 2401 dbSNP
rs796447015 2402 dbSNP
rs913649556 2407 dbSNP
rs1425367729 2409 dbSNP
rs1202070165 2417 dbSNP
rs945075314 2420 dbSNP
rs1479638648 2424 dbSNP
rs575485471 2425 dbSNP
rs1482939956 2429 dbSNP
rs932140875 2430 dbSNP
rs1259107284 2438 dbSNP
rs1054662922 2440 dbSNP
rs893370568 2442 dbSNP
rs1280936312 2443 dbSNP
rs751969201 2443 dbSNP
rs868644378 2444 dbSNP
rs754575285 2445 dbSNP
rs188488878 2451 dbSNP
rs1282387847 2453 dbSNP
rs1041692530 2456 dbSNP
rs1487822153 2457 dbSNP
rs907167888 2458 dbSNP
rs1286627953 2466 dbSNP
rs199784716 2475 dbSNP
rs1452374876 2482 dbSNP
rs1003375024 2484 dbSNP
rs1178192596 2488 dbSNP
rs1262556786 2494 dbSNP
rs1451511690 2506 dbSNP
rs1166964031 2509 dbSNP
rs1430810066 2514 dbSNP
rs72854999 2515 dbSNP
rs1483594159 2519 dbSNP
rs1055370477 2522 dbSNP
rs958801220 2525 dbSNP
rs1202079411 2537 dbSNP
rs1323088163 2538 dbSNP
rs566662422 2548 dbSNP
rs896671333 2556 dbSNP
rs767008705 2564 dbSNP
rs1428864188 2567 dbSNP
rs1262288642 2571 dbSNP
rs1218955604 2573 dbSNP
rs1309211445 2578 dbSNP
rs949530257 2581 dbSNP
rs1037152234 2582 dbSNP
rs995328179 2583 dbSNP
rs751910415 2587 dbSNP
rs1434267839 2596 dbSNP
rs761373520 2598 dbSNP
rs897210113 2600 dbSNP
rs1450092300 2602 dbSNP
rs1404815360 2613 dbSNP
rs1026940686 2617 dbSNP
rs1463805590 2630 dbSNP
rs1170405506 2632 dbSNP
rs772777514 2634 dbSNP
rs995509581 2636 dbSNP
rs1292394345 2640 dbSNP
rs1027376537 2654 dbSNP
rs773777042 2656 dbSNP
rs572705024 2667 dbSNP
rs1238971522 2672 dbSNP
rs1341098688 2674 dbSNP
rs975581855 2677 dbSNP
rs1007916970 2680 dbSNP
rs932164509 2681 dbSNP
rs1054550771 2685 dbSNP
rs1017501511 2690 dbSNP
rs760893449 2692 dbSNP
rs145051777 2693 dbSNP
rs1381607790 2694 dbSNP
rs1331558001 2696 dbSNP
rs1041912958 2705 dbSNP
rs1221512347 2707 dbSNP
rs907218134 2716 dbSNP
rs1458874181 2722 dbSNP
rs1261329445 2727 dbSNP
rs1387572384 2729 dbSNP
rs1002849980 2732 dbSNP
rs1444044755 2739 dbSNP
rs1380966328 2742 dbSNP
rs146816478 2744 dbSNP
rs573795589 2747 dbSNP
rs115383031 2748 dbSNP
rs562914213 2752 dbSNP
rs894544628 2755 dbSNP
rs995372288 2758 dbSNP
rs13415609 2761 dbSNP
rs1293788366 2764 dbSNP
rs759799242 2769 dbSNP
rs1004148969 2770 dbSNP
rs1358153634 2770 dbSNP
rs979082118 2781 dbSNP
rs140466882 2786 dbSNP
rs1306760069 2791 dbSNP
rs1333560131 2791 dbSNP
rs1387661966 2799 dbSNP
rs375245631 2803 dbSNP
rs77096156 2808 dbSNP
rs959052992 2812 dbSNP
rs1424561915 2813 dbSNP
rs527928864 2822 dbSNP
rs549594880 2823 dbSNP
rs1164005867 2832 dbSNP
rs1160366305 2849 dbSNP
rs568188524 2850 dbSNP
rs1458352788 2853 dbSNP
rs372727398 2854 dbSNP
rs1363974906 2859 dbSNP
rs550371525 2861 dbSNP
rs1197246214 2863 dbSNP
rs1037161923 2865 dbSNP
rs1286274734 2878 dbSNP
rs914746011 2884 dbSNP
rs1206330543 2886 dbSNP
rs946197070 2889 dbSNP
rs568858769 2890 dbSNP
rs1223713355 2892 dbSNP
rs928891140 2898 dbSNP
rs867743227 2910 dbSNP
rs1289521057 2919 dbSNP
rs1331921286 2931 dbSNP
rs1206880281 2936 dbSNP
rs1404949374 2937 dbSNP
rs1267629299 2938 dbSNP
rs1320385584 2947 dbSNP
rs931356003 2950 dbSNP
rs1398973608 2954 dbSNP
rs1384560844 2957 dbSNP
rs1173412336 2960 dbSNP
rs938706582 2962 dbSNP
rs1048460413 2966 dbSNP
rs1461910450 2967 dbSNP
rs1212538070 2978 dbSNP
rs1238928587 2984 dbSNP
rs1480078465 2986 dbSNP
rs1242586176 2989 dbSNP
rs894432150 2992 dbSNP
rs931385558 2994 dbSNP
rs889806151 3003 dbSNP
rs1260406061 3011 dbSNP
rs1203972977 3016 dbSNP
rs1181130585 3018 dbSNP
rs558598370 3021 dbSNP
rs1039394258 3027 dbSNP
rs145646097 3028 dbSNP
rs752373320 3032 dbSNP
rs997324818 3040 dbSNP
rs1019972257 3045 dbSNP
rs138101318 3051 dbSNP
rs750395858 3058 dbSNP
rs996951825 3064 dbSNP
rs1334476321 3075 dbSNP
rs1419928779 3077 dbSNP
rs1000596414 3078 dbSNP
rs767942885 3088 dbSNP
rs1183594668 3097 dbSNP
rs1032089656 3099 dbSNP
rs1462385262 3100 dbSNP
rs755827235 3105 dbSNP
rs1203466653 3107 dbSNP
rs990466645 3111 dbSNP
rs1213385846 3120 dbSNP
rs1275521693 3120 dbSNP
rs918166637 3121 dbSNP
rs970945470 3122 dbSNP
rs1357137715 3123 dbSNP
rs1447748691 3124 dbSNP
rs1380901954 3134 dbSNP
rs572795489 3138 dbSNP
rs918786621 3140 dbSNP
rs180947501 3141 dbSNP
rs555122886 3144 dbSNP
rs1408146168 3151 dbSNP
rs1369810689 3157 dbSNP
rs1227122603 3158 dbSNP
rs1382814227 3160 dbSNP
rs1182646042 3172 dbSNP
rs1048994983 3173 dbSNP
rs1235026849 3174 dbSNP
rs1202799743 3178 dbSNP
rs977600841 3183 dbSNP
rs1287751037 3196 dbSNP
rs1293092917 3205 dbSNP
rs928922467 3206 dbSNP
rs779941838 3207 dbSNP
rs1221085603 3212 dbSNP
rs942701317 3213 dbSNP
rs992109911 3214 dbSNP
rs573832557 3223 dbSNP
rs1041029116 3224 dbSNP
rs931271102 3234 dbSNP
rs1048537586 3240 dbSNP
rs1363228697 3241 dbSNP
rs1163451505 3242 dbSNP
rs887171320 3248 dbSNP
rs72855000 3275 dbSNP
rs1040875856 3276 dbSNP
rs143203691 3277 dbSNP
rs1472493660 3280 dbSNP
rs1042269778 3286 dbSNP
rs1028636526 3288 dbSNP
rs577975373 3293 dbSNP
rs1179948046 3294 dbSNP
rs1291139422 3299 dbSNP
rs1216518904 3314 dbSNP
rs1318977672 3316 dbSNP
rs1282374300 3319 dbSNP
rs1010517109 3325 dbSNP
rs545061838 3326 dbSNP
rs910792495 3327 dbSNP
rs1349695405 3328 dbSNP
rs1283667118 3330 dbSNP
rs560812767 3331 dbSNP
rs544207920 3335 dbSNP
rs543275954 3338 dbSNP
rs894857090 3347 dbSNP
rs1430774402 3351 dbSNP
rs1346427685 3356 dbSNP
rs1173879281 3360 dbSNP
rs1012343864 3362 dbSNP
rs1456366821 3366 dbSNP
rs1430515939 3367 dbSNP
rs1177382140 3373 dbSNP
rs1178949587 3376 dbSNP
rs754737137 3377 dbSNP
rs970367972 3378 dbSNP
rs1422596595 3385 dbSNP
rs1267213830 3386 dbSNP
rs1387472901 3390 dbSNP
rs1413596771 3401 dbSNP
rs561483653 3402 dbSNP
rs1025896922 3403 dbSNP
rs952889205 3407 dbSNP
rs1240407940 3409 dbSNP
rs1208404890 3410 dbSNP
rs1324525696 3414 dbSNP
rs531785441 3419 dbSNP
rs1221934740 3431 dbSNP
rs984269602 3437 dbSNP
rs1300559370 3440 dbSNP
rs1215070784 3442 dbSNP
rs1363534801 3444 dbSNP
rs372171094 3451 dbSNP
rs72855001 3454 dbSNP
rs1433911478 3456 dbSNP
rs942772639 3457 dbSNP
rs977231788 3459 dbSNP
rs1307964413 3461 dbSNP
rs1332242147 3465 dbSNP
rs1468526565 3466 dbSNP
rs1377393353 3470 dbSNP
rs1171789965 3475 dbSNP
rs1430797227 3476 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucggucggUUGAGUGUCACGUCu 5'
                  :| | : ||||||| 
Target 5' --------GAAUGGGAGUGCAGu 3'
1 - 15
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000423981.1 | 3UTR | GAAUGGGAGUGCAGUGGCACAGUCUUGGCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000423981.1 | 3UTR | GAAUGGGAGUGCAGUGGCACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

Error report submission