pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MCMDC2   
Synonyms C8orf45
Description minichromosome maintenance domain containing 2
Transcript NM_173518   
Other Transcripts NM_001136160 , NM_001136161   
Expression
Putative miRNA Targets on MCMDC2
3'UTR of MCMDC2
(miRNA target sites are highlighted)
>MCMDC2|NM_173518|3'UTR
   1 GCAATTTGAGGAATTTTTGTTCATTCCTACTTAAGCAGTGGAGAAAAAGTGTGACTATTTTGAGAGTGACTTTGAAGTAA
  81 TGCTTTGATAATACTCTGTACAGGAATATATTACAATACTGTTTTTAAAAATATAAAATATAGTCCCCTCAAAACTAATT
 161 GCTAATGGGATAAATACTAATCCAAACCTCTAAAACCAACAGAATTTTAAAACTTAGAACAATGTGGACAATTTAAAGTG
 241 ATAAAGTTGTCAAGGAGAATACTATAAAGAAAAACCTGGTTAGCCCAGAATACCAGTGGTGAACAGATAAAAATGTAAAT
 321 GTTGCAATTTGAGCAGTGTGTAAAATGGCAACCTTTATGTAGTTCACTCTACTGTCACAAGATGGCAATAACTCTTTACC
 401 TACAAATTACTCTAAAACATTTTTCTTCCACTTGTGAACTTGCTAAACTGATGAGTAAATACTTTATATAACCCGAAGCT
 481 TCAAATGTAAGGCCTTTTCATACTTTATTACTGGCCTGTCCATTACATACTACTGTTTTAGAAGCCCTAAATATGGAATC
 561 GGGAAAAGCCTTGGAAGTTTTCCATACGTATACGCTAGGTTAAATGAAAAAAATACTTTACACGGAAACAAGGAGCCAAT
 641 AACTTATAAATTGGCTCTCTAACCCTAACTGGTTACAAGAAAGGCTCCAAAAGGCAAAGAAACCAACTTGCAAATCTAGT
 721 CCTCATTTTTGGAGGGAAGATATCTGCTCTGAAAAGATAGGGGCACCATGAGAAAACAAATCCATCTTGTAAAATTTATA
 801 AATCCTTTTTAGTTCAGTTTCCATAACTTTAATAAAAGATCAGTTCTATTCACAGAAAAGCAAAATGTCATTACCAAATT
 881 GCCACTTTATTAACCAAGATGTTACCATGCATCAATTCTTTCAAAACTGGTCCCTTAACAGAGATGCTTAACTGTACAGC
 961 TGGACCTCTCCCACTCTCCACAGGACCCGGAGGAAGTTGTTCACTATTACTGAATACCTACTAGTAGCAGGGAGTAAACA
1041 GTATTAGTTTTCAGAAGCCAAAGGTAGTGTTTTTGTTTTTTGTTTTTTTGAGATGGGGTCTCGCTCTGTCATGCAGGCTG
1121 GAGTGCAGTGGTGTTATCTTGGCACTGCAACCTCCACCTCCCGGGTTCAAGTGATTCTCCTGCTGGGATTACAGGTGCAC
1201 TCCACCATGACTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCCG
1281 ACCTCAGGTGATCTGCCTGCCTCAGTCTCCCAAAGTGCTAAGACAACAGGTATGAGCCAACACGACTGGCGACTGTAGTT
1361 TTCAACAAAATACTTACATATTACAGTTCTATAATGTTAAGACGTTTATTTTGTGCTTCTCAAATACTACATTTCAAACA
1441 TGTCTGGCTCTCTATGGGGGGAAGGCAAAACACATTCCTATTTTATAAAACTAGGATCCTTTTACAATTGGAAAGTTTAA
1521 AAACTTTTTTTTTTGGAGACAGGGGCTGTCACCGTTTGGAGGGTTGTGGCGCCACCTCAGCTCCCTGCAGCCTTGACCTT
1601 GCAAGTAATTCTCCCACCTTAGGCCTCCGAGTAGCTGGGACTACAGGGACATGCTACCACCCTGGGATAACTTCTGCATT
1681 TTTTGTAGAGATGGAATTTTGCCATGTTTCCCAGGCTGGTCTCAAGTCATCCTCCCATCTCAGTACCTCAGCTTCCCAGT
1761 GTTGGGATTACAGGAGTGAGCCACCATGCATGGCACAAAGATGGCTTTTATTTACTTATCTATATTTATATATACATATT
1841 TATATGTAGCTGTCACCCAAGCTGTAGTGTACTGATGCAATCATAGCTCACTGCCACCTTAATCTCCCCAGCTCAAAAAA
1921 CCCAACCTCAGTCTCAAAGATGGTTACTTCACCACAAAAAAATTAAAATGTTTAAGTTTCTCATTAAAGAGTAGAAGTGT
2001 ACATTCAGAAACAATTATGGGAGGTAATTCATTAATATTAAATATGCCAACGGTATTTTAAAGGTTATTGGAGAATTAGA
2081 AGGGGGTGGGGTGCAGGACGAAAAATTAATGGGTGCAATGTACACCATTCAGGTAATGGCTGCACAAAAAGCTCAGACTC
2161 CAAACTACTTCATATACCTATGCAACAGAACTGCACTTATACCCCCCAAATCTATACTGAGGGAAGTGACTAAGATGTTG
2241 CTATACAGGTTTTATACCATTTATCATATAAAAATTATAACCTTGGTAAAAGGAATTTATAAGCTAGTACTCAACAGGAG
2321 AAAAGATTTAGCTCTAAACCTTCACCCAGATATAAATTCAGCTTTAGAATTCTTGCCAATTTAGTCCTAGACAGACTGGT
2401 CTGCTCAGTCATTTCTCTTAACATAGCATATTGCTTAGTTATTACATGTACTAGTATTAGGATGACTTTTTTGTTCACAA
2481 AGATGAAAGCAAACTGAATAAAAAAGGTGAAACCTTTATCTGTAAGGGGGAATTTGATTGCTATTTGGTATTAAAGAGTT
2561 TTAAGATTCAACCACCTGGTACAACAGCAGGCTCTGAAGGGGAAGCCAGACAGGGAACCTAGAGGTACAAGCAATGTCTC
2641 CCCAGCTGTCAGCCTCAATGAGAATCACCACCCATAAATAAGCTAATTATTGACAAGATTATAATCTTTCGAATATGTTC
2721 AAAACAGGTCTGACTAGTGACTATGAGAATGGAGCTATTTAGAGTTGATTTAAAAGAAAACACTTTATTGTTCAGCAATT
2801 AAAAGTTAGCCAAATATGTATTTTTCTCCATAATTTATTGTGATGTTATCAACATCAAGTAAAATGCTCATTTTCATCAA
2881 AAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGU-CGGUUGAGUGUCACGUCu 5'
            :|| || ::|| : ||||||| 
Target 5' tgTCATGCAGGCT-GGAGTGCAGt 3'
1107 - 1129 152.00 -18.00
2
miRNA  3' ucggucGGUUGAGU--GUCACGUCu 5'
                || |||:|  ||||| || 
Target 5' ttcattCCTACTTAAGCAGTGGAGa 3'
20 - 44 131.00 -16.20
3
miRNA  3' ucGGUCGGUUGAGUGUCACGUcu 5'
            :|| ||||  :::||||:|  
Target 5' tgTCACCCAAGCTGTAGTGTAct 3'
1851 - 1873 129.00 -15.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30574004 49 COSMIC
COSN31956727 75 COSMIC
COSN31587837 84 COSMIC
COSN6359863 491 COSMIC
COSN2285728 709 COSMIC
COSN23884909 953 COSMIC
COSN22873612 1076 COSMIC
COSN30245631 1416 COSMIC
COSN32061406 1535 COSMIC
COSN9666441 1883 COSMIC
COSN25085530 2040 COSMIC
COSN8354389 2479 COSMIC
COSN9267596 2559 COSMIC
COSN23201903 2821 COSMIC
COSN23194099 2838 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1349758606 3 dbSNP
rs1480594913 14 dbSNP
rs1444355286 18 dbSNP
rs1013106687 20 dbSNP
rs1162737229 22 dbSNP
rs769803906 27 dbSNP
rs1404918959 35 dbSNP
rs1443218707 35 dbSNP
rs1329484221 45 dbSNP
rs1388864755 52 dbSNP
rs1022231824 56 dbSNP
rs1167143005 56 dbSNP
rs935171600 59 dbSNP
rs557936584 61 dbSNP
rs968909913 92 dbSNP
rs1010646527 98 dbSNP
rs1233739060 102 dbSNP
rs1017881830 105 dbSNP
rs899530467 111 dbSNP
rs180791567 120 dbSNP
rs1213978658 133 dbSNP
rs1259134387 136 dbSNP
rs1459323902 139 dbSNP
rs1031011264 141 dbSNP
rs1202404836 154 dbSNP
rs1031720555 155 dbSNP
rs1265762791 164 dbSNP
rs540496683 170 dbSNP
rs954866925 174 dbSNP
rs1443126670 191 dbSNP
rs143334590 200 dbSNP
rs976696703 201 dbSNP
rs1434059422 204 dbSNP
rs778410742 205 dbSNP
rs1171582937 212 dbSNP
rs963448220 212 dbSNP
rs532231339 218 dbSNP
rs1462216005 222 dbSNP
rs973509523 224 dbSNP
rs1157015215 239 dbSNP
rs1425510317 243 dbSNP
rs953324671 244 dbSNP
rs1409377128 250 dbSNP
rs569729255 253 dbSNP
rs1477228741 260 dbSNP
rs1255342453 266 dbSNP
rs1336063299 271 dbSNP
rs986047424 272 dbSNP
rs1402790982 276 dbSNP
rs1245597054 281 dbSNP
rs909079374 291 dbSNP
rs1317394253 300 dbSNP
rs969391752 305 dbSNP
rs982017956 309 dbSNP
rs1349764520 316 dbSNP
rs941866983 319 dbSNP
rs927875546 322 dbSNP
rs547215454 325 dbSNP
rs749684382 330 dbSNP
rs1364747014 333 dbSNP
rs1279697050 340 dbSNP
rs1433012888 353 dbSNP
rs935304371 363 dbSNP
rs918973347 366 dbSNP
rs1052692060 367 dbSNP
rs938339542 370 dbSNP
rs771298656 374 dbSNP
rs1403358201 381 dbSNP
rs779622942 386 dbSNP
rs1013622228 389 dbSNP
rs1039444822 409 dbSNP
rs899478016 420 dbSNP
rs1187725533 425 dbSNP
rs746624719 430 dbSNP
rs573955648 440 dbSNP
rs998265448 453 dbSNP
rs1051982155 460 dbSNP
rs1227418467 462 dbSNP
rs542787965 464 dbSNP
rs890700076 469 dbSNP
rs1216602042 475 dbSNP
rs1362739684 476 dbSNP
rs186413177 486 dbSNP
rs1302406767 488 dbSNP
rs1202654683 492 dbSNP
rs1032187239 493 dbSNP
rs531857259 495 dbSNP
rs1005167489 501 dbSNP
rs1313818810 502 dbSNP
rs965410251 505 dbSNP
rs1487966817 509 dbSNP
rs998206939 512 dbSNP
rs1028308769 520 dbSNP
rs954037916 523 dbSNP
rs1172071045 531 dbSNP
rs1428815156 537 dbSNP
rs986491699 542 dbSNP
rs190858338 546 dbSNP
rs1265590563 549 dbSNP
rs1185174033 551 dbSNP
rs1479360268 553 dbSNP
rs747656988 561 dbSNP
rs963550729 562 dbSNP
rs1204392740 564 dbSNP
rs1175400194 569 dbSNP
rs148342492 587 dbSNP
rs971891325 588 dbSNP
rs536079988 589 dbSNP
rs183058026 592 dbSNP
rs1383622345 594 dbSNP
rs1308308886 595 dbSNP
rs547663350 606 dbSNP
rs1419762890 619 dbSNP
rs1231555383 620 dbSNP
rs938433031 624 dbSNP
rs548432637 625 dbSNP
rs928023065 627 dbSNP
rs1300267505 631 dbSNP
rs915621105 634 dbSNP
rs988097129 638 dbSNP
rs769785029 640 dbSNP
rs1462527349 644 dbSNP
rs140511249 652 dbSNP
rs1301048378 653 dbSNP
rs1039391350 655 dbSNP
rs1417318648 665 dbSNP
rs1331986410 670 dbSNP
rs1043710900 672 dbSNP
rs904746021 673 dbSNP
rs1236080036 677 dbSNP
rs934843260 680 dbSNP
rs773167501 683 dbSNP
rs1272821539 685 dbSNP
rs1212102115 694 dbSNP
rs1337013781 706 dbSNP
rs1273961271 708 dbSNP
rs1353145486 712 dbSNP
rs1228244830 736 dbSNP
rs901336413 737 dbSNP
rs1309537078 739 dbSNP
rs1392362428 746 dbSNP
rs886805730 747 dbSNP
rs1323447874 748 dbSNP
rs1442728428 755 dbSNP
rs762702510 758 dbSNP
rs998259289 761 dbSNP
rs1394577289 766 dbSNP
rs1028361017 768 dbSNP
rs889786353 769 dbSNP
rs1005523260 770 dbSNP
rs1451470623 778 dbSNP
rs185683599 782 dbSNP
rs568939536 785 dbSNP
rs1190778547 788 dbSNP
rs1005516278 790 dbSNP
rs1036630013 791 dbSNP
rs1250962436 797 dbSNP
rs899298562 806 dbSNP
rs1179650068 813 dbSNP
rs1379592385 822 dbSNP
rs1016605723 824 dbSNP
rs1253640907 828 dbSNP
rs537896656 830 dbSNP
rs1349108774 834 dbSNP
rs116646543 842 dbSNP
rs905270248 844 dbSNP
rs1347589819 850 dbSNP
rs1301786168 855 dbSNP
rs1026188808 856 dbSNP
rs1423625792 868 dbSNP
rs1235956278 872 dbSNP
rs116110533 875 dbSNP
rs1319247815 882 dbSNP
rs191224471 889 dbSNP
rs1388872547 909 dbSNP
rs1035415727 912 dbSNP
rs992582201 919 dbSNP
rs956748326 928 dbSNP
rs988432862 929 dbSNP
rs1395951079 932 dbSNP
rs1192793822 938 dbSNP
rs1264015483 939 dbSNP
rs1206238220 940 dbSNP
rs1022173832 943 dbSNP
rs1278565329 959 dbSNP
rs967814193 964 dbSNP
rs1348106516 978 dbSNP
rs76829984 984 dbSNP
rs948404509 989 dbSNP
rs1327668372 1001 dbSNP
rs537148947 1006 dbSNP
rs145667950 1015 dbSNP
rs1395324338 1020 dbSNP
rs1373581543 1021 dbSNP
rs1221114834 1026 dbSNP
rs978428625 1033 dbSNP
rs543004092 1039 dbSNP
rs1369768620 1042 dbSNP
rs1489369651 1043 dbSNP
rs934958345 1059 dbSNP
rs1167541353 1074 dbSNP
rs1474586344 1076 dbSNP
rs1053291336 1083 dbSNP
rs1374800775 1083 dbSNP
rs901388681 1085 dbSNP
rs556237562 1088 dbSNP
rs771649747 1093 dbSNP
rs1237298498 1095 dbSNP
rs1256066153 1101 dbSNP
rs576497363 1104 dbSNP
rs55773727 1113 dbSNP
rs1272819466 1118 dbSNP
rs889847126 1120 dbSNP
rs1005983019 1124 dbSNP
rs1232185019 1132 dbSNP
rs1353063534 1151 dbSNP
rs138254949 1163 dbSNP
rs905385662 1164 dbSNP
rs1334940584 1169 dbSNP
rs1326615620 1183 dbSNP
rs1408370755 1186 dbSNP
rs759765856 1190 dbSNP
rs537003176 1196 dbSNP
rs897132798 1209 dbSNP
rs1415835402 1211 dbSNP
rs58005291 1218 dbSNP
rs1459802377 1219 dbSNP
rs183158215 1220 dbSNP
rs1399959873 1225 dbSNP
rs1180132579 1240 dbSNP
rs1439153259 1241 dbSNP
rs959871721 1245 dbSNP
rs59550227 1255 dbSNP
rs770780453 1266 dbSNP
rs1332012816 1269 dbSNP
rs969857795 1272 dbSNP
rs1022291520 1276 dbSNP
rs978906169 1279 dbSNP
rs530286936 1280 dbSNP
rs955895852 1281 dbSNP
rs1227789737 1283 dbSNP
rs989024556 1284 dbSNP
rs1444155931 1288 dbSNP
rs1323764805 1290 dbSNP
rs1225456476 1297 dbSNP
rs112019751 1304 dbSNP
rs60666237 1305 dbSNP
rs1200527024 1307 dbSNP
rs1241188378 1312 dbSNP
rs1482669769 1313 dbSNP
rs1049858593 1321 dbSNP
rs911359827 1323 dbSNP
rs1167201487 1329 dbSNP
rs765117484 1331 dbSNP
rs908289951 1334 dbSNP
rs778466120 1335 dbSNP
rs1038861520 1344 dbSNP
rs973728508 1345 dbSNP
rs75946479 1350 dbSNP
rs551477408 1351 dbSNP
rs994136998 1352 dbSNP
rs1169443304 1354 dbSNP
rs1045361151 1355 dbSNP
rs62513068 1367 dbSNP
rs905327829 1369 dbSNP
rs761894831 1371 dbSNP
rs879127100 1371 dbSNP
rs1173523151 1374 dbSNP
rs1357899566 1378 dbSNP
rs1447895898 1379 dbSNP
rs1233761469 1386 dbSNP
rs1303521736 1391 dbSNP
rs1047692253 1392 dbSNP
rs1327959662 1394 dbSNP
rs571499970 1404 dbSNP
rs1380753558 1405 dbSNP
rs892546841 1407 dbSNP
rs1403017943 1415 dbSNP
rs1318409527 1418 dbSNP
rs1014162637 1420 dbSNP
rs1009640651 1425 dbSNP
rs1452134622 1429 dbSNP
rs1396545189 1433 dbSNP
rs1022826822 1440 dbSNP
rs1043694541 1440 dbSNP
rs970288331 1441 dbSNP
rs999987901 1442 dbSNP
rs549958131 1444 dbSNP
rs376162354 1453 dbSNP
rs1033134991 1456 dbSNP
rs1217860189 1460 dbSNP
rs955713206 1461 dbSNP
rs1447519839 1462 dbSNP
rs1261220920 1475 dbSNP
rs1028250007 1493 dbSNP
rs879898992 1494 dbSNP
rs1305870393 1496 dbSNP
rs922873155 1498 dbSNP
rs1015877289 1500 dbSNP
rs373874795 1500 dbSNP
rs955643887 1503 dbSNP
rs1268494464 1505 dbSNP
rs533964470 1508 dbSNP
rs1377705377 1512 dbSNP
rs911426050 1512 dbSNP
rs1192569380 1513 dbSNP
rs1427626245 1518 dbSNP
rs1263436788 1521 dbSNP
rs941488690 1522 dbSNP
rs1038464227 1523 dbSNP
rs1185775218 1525 dbSNP
rs1256679317 1525 dbSNP
rs548938662 1525 dbSNP
rs926895211 1525 dbSNP
rs939636178 1525 dbSNP
rs969723039 1525 dbSNP
rs1307146574 1537 dbSNP
rs1270907085 1541 dbSNP
rs914085439 1541 dbSNP
rs918640473 1542 dbSNP
rs945444701 1547 dbSNP
rs1043807032 1549 dbSNP
rs1196339908 1555 dbSNP
rs903830521 1558 dbSNP
rs929980352 1562 dbSNP
rs1056504562 1567 dbSNP
rs563578996 1571 dbSNP
rs1050228991 1572 dbSNP
rs1014214890 1582 dbSNP
rs1044702238 1587 dbSNP
rs1352425817 1596 dbSNP
rs535104300 1602 dbSNP
rs1416600535 1603 dbSNP
rs1177347029 1609 dbSNP
rs1476146973 1621 dbSNP
rs1256519468 1622 dbSNP
rs905698213 1624 dbSNP
rs1361038697 1627 dbSNP
rs1000402023 1629 dbSNP
rs373467789 1630 dbSNP
rs1297876690 1637 dbSNP
rs567554739 1642 dbSNP
rs750719546 1648 dbSNP
rs1026741110 1652 dbSNP
rs1318686541 1653 dbSNP
rs969670935 1662 dbSNP
rs536122881 1663 dbSNP
rs1366567131 1669 dbSNP
rs891522106 1676 dbSNP
rs1009921797 1679 dbSNP
rs1313822347 1679 dbSNP
rs1371691068 1687 dbSNP
rs546785927 1688 dbSNP
rs1280644823 1689 dbSNP
rs76983546 1691 dbSNP
rs1393012440 1692 dbSNP
rs1162186642 1695 dbSNP
rs955031585 1705 dbSNP
rs1417060886 1717 dbSNP
rs115624495 1719 dbSNP
rs914047236 1721 dbSNP
rs1238669526 1724 dbSNP
rs1458391718 1724 dbSNP
rs945560990 1732 dbSNP
rs1211929239 1737 dbSNP
rs1194305823 1741 dbSNP
rs1286058579 1745 dbSNP
rs1489081071 1748 dbSNP
rs1043752576 1750 dbSNP
rs1309606389 1756 dbSNP
rs1219725907 1763 dbSNP
rs1018910421 1772 dbSNP
rs545134007 1783 dbSNP
rs932773040 1791 dbSNP
rs1442423887 1792 dbSNP
rs1477905452 1794 dbSNP
rs891146673 1797 dbSNP
rs974626080 1797 dbSNP
rs943947689 1802 dbSNP
rs1159044076 1807 dbSNP
rs918740957 1809 dbSNP
rs1192348619 1812 dbSNP
rs1394742468 1812 dbSNP
rs1434964576 1815 dbSNP
rs558618669 1819 dbSNP
rs1268221675 1823 dbSNP
rs572353043 1829 dbSNP
rs896955356 1831 dbSNP
rs995341075 1832 dbSNP
rs931272109 1833 dbSNP
rs1427843590 1846 dbSNP
rs187893793 1855 dbSNP
rs1347660229 1863 dbSNP
rs1158152763 1867 dbSNP
rs1236117428 1868 dbSNP
rs1001719876 1869 dbSNP
rs992237125 1876 dbSNP
rs1035344967 1878 dbSNP
rs1387081658 1879 dbSNP
rs959992233 1880 dbSNP
rs1433836328 1881 dbSNP
rs868569868 1884 dbSNP
rs947995541 1886 dbSNP
rs1171998553 1892 dbSNP
rs1421763657 1894 dbSNP
rs756389293 1898 dbSNP
rs1467775939 1901 dbSNP
rs1321752977 1915 dbSNP
rs1192590517 1921 dbSNP
rs1427217591 1923 dbSNP
rs1044326872 1926 dbSNP
rs1195093204 1936 dbSNP
rs1349154050 1936 dbSNP
rs905745991 1939 dbSNP
rs1201752393 1940 dbSNP
rs1345301608 1944 dbSNP
rs1436913082 1946 dbSNP
rs1341879572 1952 dbSNP
rs935866585 1953 dbSNP
rs1021166528 1956 dbSNP
rs1054718124 1961 dbSNP
rs1353254872 1966 dbSNP
rs779300445 1970 dbSNP
rs1403219411 1971 dbSNP
rs766896147 1971 dbSNP
rs1167596802 1974 dbSNP
rs1460508284 1981 dbSNP
rs1425946520 1985 dbSNP
rs769888527 1986 dbSNP
rs1009973469 1987 dbSNP
rs925483343 1988 dbSNP
rs1451447346 1990 dbSNP
rs1029363294 1993 dbSNP
rs1190080381 2003 dbSNP
rs746650220 2010 dbSNP
rs932736018 2019 dbSNP
rs1319379315 2025 dbSNP
rs985969771 2025 dbSNP
rs1258145294 2033 dbSNP
rs912537739 2039 dbSNP
rs1248775819 2040 dbSNP
rs1456838574 2049 dbSNP
rs561286184 2052 dbSNP
rs117090277 2053 dbSNP
rs1328417698 2055 dbSNP
rs1444933177 2057 dbSNP
rs1402470663 2064 dbSNP
rs1332141879 2070 dbSNP
rs1461338734 2074 dbSNP
rs1416380839 2080 dbSNP
rs1441616081 2082 dbSNP
rs1473318870 2084 dbSNP
rs1363649530 2091 dbSNP
rs1179140420 2094 dbSNP
rs543727752 2095 dbSNP
rs1212556619 2096 dbSNP
rs1466782076 2098 dbSNP
rs192781424 2100 dbSNP
rs1048242886 2101 dbSNP
rs974339741 2108 dbSNP
rs769269588 2112 dbSNP
rs1025852724 2118 dbSNP
rs1325305159 2119 dbSNP
rs1310030577 2121 dbSNP
rs1440229158 2122 dbSNP
rs1348262267 2124 dbSNP
rs1326097410 2133 dbSNP
rs895447620 2134 dbSNP
rs773042222 2135 dbSNP
rs1010316232 2143 dbSNP
rs992247147 2152 dbSNP
rs917972802 2163 dbSNP
rs1397777693 2164 dbSNP
rs1192674508 2166 dbSNP
rs1019943499 2167 dbSNP
rs948090853 2168 dbSNP
rs182259143 2175 dbSNP
rs118142235 2178 dbSNP
rs979678775 2181 dbSNP
rs1281822726 2187 dbSNP
rs1378552670 2191 dbSNP
rs1218564356 2200 dbSNP
rs188069141 2201 dbSNP
rs551540660 2206 dbSNP
rs1354205134 2207 dbSNP
rs1032452045 2209 dbSNP
rs762904593 2224 dbSNP
rs1233920703 2227 dbSNP
rs564967834 2229 dbSNP
rs35070437 2234 dbSNP
rs1229624148 2241 dbSNP
rs912642415 2245 dbSNP
rs77711755 2250 dbSNP
rs1326386901 2258 dbSNP
rs527334525 2268 dbSNP
rs1316371775 2276 dbSNP
rs192351788 2281 dbSNP
rs542071134 2282 dbSNP
rs1412407160 2284 dbSNP
rs1426592531 2289 dbSNP
rs1459183875 2292 dbSNP
rs1185468589 2295 dbSNP
rs945852039 2297 dbSNP
rs774137906 2313 dbSNP
rs1236928346 2321 dbSNP
rs1473256649 2323 dbSNP
rs1048359955 2326 dbSNP
rs1310686892 2333 dbSNP
rs1280773242 2335 dbSNP
rs890853736 2343 dbSNP
rs1338877735 2344 dbSNP
rs11995086 2347 dbSNP
rs1402469119 2349 dbSNP
rs557644537 2350 dbSNP
rs536577840 2351 dbSNP
rs1312670106 2352 dbSNP
rs1464899374 2354 dbSNP
rs549793051 2362 dbSNP
rs1360570058 2372 dbSNP
rs1408845596 2380 dbSNP
rs1057004805 2384 dbSNP
rs1171361491 2389 dbSNP
rs144058918 2393 dbSNP
rs1394179861 2394 dbSNP
rs996201221 2396 dbSNP
rs1025862634 2403 dbSNP
rs7833447 2406 dbSNP
rs371033453 2424 dbSNP
rs1211158632 2434 dbSNP
rs1437309167 2435 dbSNP
rs1256240076 2443 dbSNP
rs1025081487 2448 dbSNP
rs1319245345 2449 dbSNP
rs1275905535 2455 dbSNP
rs546566590 2467 dbSNP
rs1226935519 2477 dbSNP
rs1381864675 2479 dbSNP
rs770549712 2479 dbSNP
rs904217336 2480 dbSNP
rs1001045797 2483 dbSNP
rs1218383175 2485 dbSNP
rs1259314783 2486 dbSNP
rs1342124451 2497 dbSNP
rs780994158 2500 dbSNP
rs969899552 2508 dbSNP
rs866914577 2509 dbSNP
rs1466037475 2516 dbSNP
rs1032566421 2523 dbSNP
rs531600146 2528 dbSNP
rs1425320703 2529 dbSNP
rs564863044 2539 dbSNP
rs1007465825 2544 dbSNP
rs925308619 2546 dbSNP
rs958059555 2549 dbSNP
rs200076036 2561 dbSNP
rs913124190 2562 dbSNP
rs534772108 2572 dbSNP
rs1458304362 2576 dbSNP
rs1261280316 2583 dbSNP
rs965830273 2583 dbSNP
rs1220085965 2590 dbSNP
rs1323877511 2595 dbSNP
rs1313892854 2612 dbSNP
rs945904498 2616 dbSNP
rs1374231838 2619 dbSNP
rs555164423 2626 dbSNP
rs1446852324 2628 dbSNP
rs1477397724 2634 dbSNP
rs912386300 2635 dbSNP
rs942479851 2637 dbSNP
rs1459384443 2659 dbSNP
rs534903452 2664 dbSNP
rs1158133996 2666 dbSNP
rs574910937 2674 dbSNP
rs764187148 2680 dbSNP
rs1039453584 2681 dbSNP
rs1425447461 2682 dbSNP
rs984004423 2683 dbSNP
rs1464492135 2684 dbSNP
rs1171860079 2685 dbSNP
rs898158257 2686 dbSNP
rs995150187 2691 dbSNP
rs544126785 2694 dbSNP
rs1266850622 2695 dbSNP
rs1415667383 2697 dbSNP
rs745611788 2703 dbSNP
rs1189921458 2704 dbSNP
rs887332824 2710 dbSNP
rs927205043 2712 dbSNP
rs1216300170 2713 dbSNP
rs1013826020 2717 dbSNP
rs1057354359 2721 dbSNP
rs532044457 2723 dbSNP
rs1287699117 2728 dbSNP
rs917113953 2739 dbSNP
rs1369521426 2740 dbSNP
rs1298574625 2742 dbSNP
rs945777335 2744 dbSNP
rs1339409928 2748 dbSNP
rs1288258502 2750 dbSNP
rs1417609940 2756 dbSNP
rs553021515 2757 dbSNP
rs73691150 2767 dbSNP
rs1160680435 2768 dbSNP
rs184559494 2768 dbSNP
rs764303674 2772 dbSNP
rs969574214 2777 dbSNP
rs757600997 2780 dbSNP
rs904164857 2780 dbSNP
rs1491301108 2784 dbSNP
rs1491432681 2785 dbSNP
rs1002736100 2786 dbSNP
rs1196881210 2792 dbSNP
rs1032386115 2793 dbSNP
rs1268637066 2801 dbSNP
rs1193644745 2804 dbSNP
rs1328498056 2806 dbSNP
rs754334276 2811 dbSNP
rs545024405 2812 dbSNP
rs148652045 2815 dbSNP
rs958294102 2816 dbSNP
rs1234744793 2818 dbSNP
rs1274764563 2819 dbSNP
rs1294757654 2821 dbSNP
rs1398149506 2832 dbSNP
rs1342074246 2834 dbSNP
rs1298601804 2835 dbSNP
rs1345869837 2835 dbSNP
rs1401725564 2839 dbSNP
rs779244744 2839 dbSNP
rs1171084527 2843 dbSNP
rs527405048 2844 dbSNP
rs541092992 2846 dbSNP
rs988080414 2863 dbSNP
rs1170504900 2868 dbSNP
rs7815863 2870 dbSNP
rs1426167017 2871 dbSNP
rs561172483 2873 dbSNP
rs1442247953 2876 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucgGU-CGGUUGAGUGUCACGUCu 5'
             || || ::|| : ||||||| 
Target 5' ---CAUGCAGGCU-GGAGUGCAGu 3'
1 - 20
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000422365.2 | 3UTR | CAUGCAGGCUGGAGUGCAGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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