pre-miRNA Information
pre-miRNA hsa-mir-3160-1   
Genomic Coordinates chr11: 46451805 - 46451889
Description Homo sapiens miR-3160-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3160-2   
Genomic Coordinates chr11: 46451807 - 46451887
Description Homo sapiens miR-3160-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3160-3p
Sequence 54| AGAGCUGAGACUAGAAAGCCCA |75
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30582333 1 COSMIC
COSN1535547 3 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1396368683 1 dbSNP
rs1162409303 2 dbSNP
rs1404378453 12 dbSNP
rs1171960732 14 dbSNP
rs1324633375 16 dbSNP
rs1187765019 16 dbSNP
rs1300058326 19 dbSNP
rs1432898407 21 dbSNP
rs1011279103 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol IMP4   
Synonyms BXDC4
Description IMP4, U3 small nucleolar ribonucleoprotein
Transcript NM_033416   
Expression
Putative miRNA Targets on IMP4
3'UTR of IMP4
(miRNA target sites are highlighted)
>IMP4|NM_033416|3'UTR
   1 GCACACTCACCACTCAGTCAGGACATGGACTTGGAACTCAGGATGGGGCTGTCATAGACAGACCCACCAGTAGGAACTGT
  81 CACAGAATGGCCTGCTGAACTGGGATGTGGAACTGTGGCGGGTGGAGAGGTCTGAATAAACCGTCTGTGTCATGGCCCCG
 161 CCTGCCTCTGAGTGGTCAGGCCAAGTCTGCAGGGCAAAGCCCATGGGATCCCTTTGGGTGGGGACCTGATGGCTGTGGGA
 241 CGTGCTTGGGCCTGGAGTCAGTGTGGGGGTTAACAGAGAGAGAGATTTGATGCTAACGTCCCCTCAAGAGTGAGGGTCAT
 321 ATGAGCTCTTCAGCAGGCAGATGTGGGTAGCAGGGCCAGCCTGTGTCAGGGGCAGCCCACCAAGTTAACTCACTGAGTGG
 401 AAGCCGCCAGTGTGCCAACGCGGAGGGGACAGGCCACACCCAGTGCTCAGCAGCTGATTCCTCATGTAAGTGGCATCATG
 481 TGGTATTTGTTTTGTGTCTGGCTTATTTCTATTAACATAATGTTCTCCAGGTTCCTCCATGTTATTGCAAATGATAGGAT
 561 TTCTTTCCTTGTAAAAAATAACATGCCACATTTTCTTACCAATCCGTCCACCAATAGACACTTAGGTCGTTTTCATAGTT
 641 TGGCAGTTGTGGAAATGCTGCAGTAAACATGGGAGTATAGCTATCTTTTGAAGATAATGATTTCATCTCTTTTTTATATG
 721 TATACCCAGAAGTGGGATTGCTGCATCAAATGGTGGTTCTATTTTTAATTTTTTGAGGAACCGCCATACTGTTTTCCATA
 801 AAGGCTGTACTAATTTCCATTCTCACCAACAGTTCACTAGGGTTCCCTTTTCTCCACATTGTTGCCAACATTCTTTATCT
 881 TGTGTTTTTTAATAACAGCTATCCTAACAGGTATGAGGTGATCTCTCTCATTGCGGTTTTGATTTGCATTTCCCTAACGG
 961 TTGGTGATACTGAGCATTTTTGCATACACCGGGTCATTTGTTCTTTGTTGTTGACTTGAGTCCCTTATATAGTTTGGATA
1041 CTGCTGTGGCCTGAATGTTTGTGTCCCCCAAAAATTCGTATATTGAACTCTCATCCCTAAGGTCAACAGTTTAGGGAAGC
1121 GATTAGGTCCTGAGGACTCTGCCCTCTTGCATAGAATTAGTGCTCTTATAAAAGATGCCCGAGGGAGCTCTTTTGCCCCT
1201 CCTGCCATGTGAGGACACAGCTAGAAGCTACCATCTGTGAACCAGGAAGCCCCCCTCACCAGACACTGAATCTGCTGGAG
1281 CCACCATCTTGGACTTCCCAGCCTCCAGAGCTGTGAGAAATAAATGCCTGTTGTTTAAGCTACCCAGTCTGTGGTATTTT
1361 GTTAGAACAGCCCAAGTTGAGACAGATAGTAACCCTTTACCAGATACATGGTTTGCAAATAGTTTTTCCCACTCTGTAGA
1441 TATAGCCATTGAGAAGCTCCTCAAGATAGACATTAAATACAAAGAAGCATGGT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accCGAAAGAUCAGAGUCGAga 5'
             |:|||:|| |  |||||  
Target 5' tgtGTTTTTTAATAACAGCTat 3'
881 - 902 119.00 -10.10
2
miRNA  3' acccgaaagAUCAGAGUCGAGa 5'
                   |: |:||| ||| 
Target 5' tgaagataaTGATTTCATCTCt 3'
689 - 710 117.00 -6.80
3
miRNA  3' acccgaaaGAUCA-GAGUCGaga 5'
                  | ||| ||||||   
Target 5' ggccacacCCAGTGCTCAGCagc 3'
432 - 454 114.00 -10.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN28740964 9 COSMIC
COSN23061876 33 COSMIC
COSN30160043 43 COSMIC
COSN31561229 130 COSMIC
COSN30105956 137 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1391186294 2 dbSNP
rs755641127 3 dbSNP
rs777316797 4 dbSNP
rs1367984461 5 dbSNP
rs772871399 6 dbSNP
rs774670284 7 dbSNP
rs11542414 9 dbSNP
rs778773468 11 dbSNP
rs745675261 12 dbSNP
rs1297797896 13 dbSNP
rs771788273 16 dbSNP
rs531555970 17 dbSNP
rs1279517643 19 dbSNP
rs1200124201 21 dbSNP
rs1342897315 24 dbSNP
rs767693563 26 dbSNP
rs1293923798 27 dbSNP
rs1322222896 37 dbSNP
rs543708443 40 dbSNP
rs989484404 41 dbSNP
rs768663794 46 dbSNP
rs1219370421 52 dbSNP
rs1276287926 55 dbSNP
rs35863125 63 dbSNP
rs116215643 77 dbSNP
rs1359528799 82 dbSNP
rs772154814 83 dbSNP
rs1412382211 84 dbSNP
rs1398239122 101 dbSNP
rs1232347856 109 dbSNP
rs1251676118 110 dbSNP
rs982569879 114 dbSNP
rs928067538 120 dbSNP
rs879428970 121 dbSNP
rs1196695326 122 dbSNP
rs1192135539 123 dbSNP
rs902085347 124 dbSNP
rs200806182 127 dbSNP
rs1476367098 130 dbSNP
rs1052041783 132 dbSNP
rs1238432977 135 dbSNP
rs532830806 141 dbSNP
rs1010614378 142 dbSNP
rs894270592 144 dbSNP
rs547708704 149 dbSNP
rs566241684 151 dbSNP
rs1013910979 154 dbSNP
rs1265620277 159 dbSNP
rs1024006692 160 dbSNP
rs1047655301 166 dbSNP
rs547155709 171 dbSNP
rs1194276303 173 dbSNP
rs962032351 175 dbSNP
rs868362458 182 dbSNP
rs1426267382 184 dbSNP
rs944398246 188 dbSNP
rs972301945 190 dbSNP
rs1464590316 192 dbSNP
rs1397543750 193 dbSNP
rs1169099715 195 dbSNP
rs186198743 196 dbSNP
rs952237559 201 dbSNP
rs986300591 204 dbSNP
rs140737730 213 dbSNP
rs1028478676 217 dbSNP
rs944819439 218 dbSNP
rs893989990 219 dbSNP
rs1179498111 223 dbSNP
rs976148493 224 dbSNP
rs913882573 242 dbSNP
rs1215681865 243 dbSNP
rs1385888083 253 dbSNP
rs1289136157 254 dbSNP
rs1226342686 255 dbSNP
rs945373815 265 dbSNP
rs1278549069 269 dbSNP
rs1041603466 274 dbSNP
rs1309479355 275 dbSNP
rs1445610499 275 dbSNP
rs1021213862 283 dbSNP
rs1327292752 286 dbSNP
rs145790801 287 dbSNP
rs1342173938 294 dbSNP
rs967105512 298 dbSNP
rs1277539178 299 dbSNP
rs191702326 301 dbSNP
rs1223780568 302 dbSNP
rs1439288074 303 dbSNP
rs1192983781 306 dbSNP
rs925897810 306 dbSNP
rs1488856599 310 dbSNP
rs1263777200 312 dbSNP
rs935817940 314 dbSNP
rs760622599 315 dbSNP
rs1035083835 319 dbSNP
rs1219323073 320 dbSNP
rs556188169 323 dbSNP
rs1205982014 326 dbSNP
rs1286437764 327 dbSNP
rs1239206434 331 dbSNP
rs1351044016 342 dbSNP
rs990914322 348 dbSNP
rs1265758510 351 dbSNP
rs145351372 354 dbSNP
rs1219241912 356 dbSNP
rs1366291501 368 dbSNP
rs894216879 369 dbSNP
rs1434973318 376 dbSNP
rs1477075567 379 dbSNP
rs1193559204 388 dbSNP
rs920400256 398 dbSNP
rs1419543669 403 dbSNP
rs149153568 406 dbSNP
rs1045892161 407 dbSNP
rs897454149 408 dbSNP
rs1166213208 411 dbSNP
rs1022468676 420 dbSNP
rs907822580 421 dbSNP
rs1298472675 422 dbSNP
rs944369669 423 dbSNP
rs1215609322 428 dbSNP
rs1487191486 431 dbSNP
rs1257321373 434 dbSNP
rs1040065709 437 dbSNP
rs1362191367 454 dbSNP
rs538906132 457 dbSNP
rs1297364589 458 dbSNP
rs1215887426 461 dbSNP
rs952419511 464 dbSNP
rs879873088 467 dbSNP
rs1279408664 474 dbSNP
rs1007666437 476 dbSNP
rs1017695703 477 dbSNP
rs1359061615 480 dbSNP
rs1304759332 482 dbSNP
rs55872863 484 dbSNP
rs1358843403 499 dbSNP
rs976101061 501 dbSNP
rs1467299760 503 dbSNP
rs913985245 507 dbSNP
rs1192854878 510 dbSNP
rs867736767 512 dbSNP
rs765188854 522 dbSNP
rs572168324 529 dbSNP
rs902787449 532 dbSNP
rs1487510621 536 dbSNP
rs1482723490 537 dbSNP
rs1216258997 538 dbSNP
rs1258670899 540 dbSNP
rs1199923000 541 dbSNP
rs979881591 542 dbSNP
rs1180656527 546 dbSNP
rs542719411 548 dbSNP
rs1422777940 554 dbSNP
rs1315238097 558 dbSNP
rs935933167 559 dbSNP
rs1055733451 564 dbSNP
rs1158857609 567 dbSNP
rs915707800 568 dbSNP
rs1378701940 571 dbSNP
rs959375958 572 dbSNP
rs1401159409 573 dbSNP
rs143301982 574 dbSNP
rs1463978587 580 dbSNP
rs112225933 581 dbSNP
rs1157780781 584 dbSNP
rs951966129 589 dbSNP
rs983345231 591 dbSNP
rs1450094149 596 dbSNP
rs1180163461 600 dbSNP
rs907768041 603 dbSNP
rs758240274 606 dbSNP
rs1301068485 607 dbSNP
rs1045476146 613 dbSNP
rs576123054 614 dbSNP
rs777374395 615 dbSNP
rs1449308263 629 dbSNP
rs751294029 630 dbSNP
rs1330725395 637 dbSNP
rs1444731341 640 dbSNP
rs1311563455 642 dbSNP
rs1392723013 647 dbSNP
rs1351707974 664 dbSNP
rs921578849 666 dbSNP
rs1239724561 670 dbSNP
rs1366525948 672 dbSNP
rs931653213 676 dbSNP
rs1054125441 684 dbSNP
rs149810561 684 dbSNP
rs371436361 684 dbSNP
rs543450663 685 dbSNP
rs565266955 699 dbSNP
rs1270006817 700 dbSNP
rs1210992396 704 dbSNP
rs1034881827 705 dbSNP
rs902691715 706 dbSNP
rs111657186 710 dbSNP
rs756712708 711 dbSNP
rs1482174155 713 dbSNP
rs1237465440 720 dbSNP
rs1236889526 731 dbSNP
rs1056731654 732 dbSNP
rs188136808 744 dbSNP
rs887455640 753 dbSNP
rs1363685652 757 dbSNP
rs1299805317 762 dbSNP
rs1007739997 764 dbSNP
rs1178658119 769 dbSNP
rs14146 778 dbSNP
rs952187389 781 dbSNP
rs966149850 783 dbSNP
rs1177671706 784 dbSNP
rs1197605666 785 dbSNP
rs1433079510 791 dbSNP
rs998128264 792 dbSNP
rs966291566 799 dbSNP
rs116071520 807 dbSNP
rs967221279 827 dbSNP
rs979444502 830 dbSNP
rs1347467213 836 dbSNP
rs148332793 843 dbSNP
rs1275484405 846 dbSNP
rs1358440840 858 dbSNP
rs925246536 867 dbSNP
rs1466087614 869 dbSNP
rs1280031052 870 dbSNP
rs1400310217 871 dbSNP
rs953046480 873 dbSNP
rs750728215 876 dbSNP
rs758833660 877 dbSNP
rs1315724897 878 dbSNP
rs1415797747 886 dbSNP
rs1333391566 901 dbSNP
rs1402519405 902 dbSNP
rs1171478792 904 dbSNP
rs1374804163 905 dbSNP
rs1464118493 905 dbSNP
rs770373271 912 dbSNP
rs1478325344 913 dbSNP
rs1262899352 916 dbSNP
rs35081968 916 dbSNP
rs1191540920 922 dbSNP
rs1279678740 922 dbSNP
rs1444343155 922 dbSNP
rs991370557 924 dbSNP
rs1199882793 926 dbSNP
rs914292589 932 dbSNP
rs1275712283 934 dbSNP
rs915863246 935 dbSNP
rs142986466 936 dbSNP
rs1450035389 940 dbSNP
rs945784806 943 dbSNP
rs6748595 949 dbSNP
rs531421094 959 dbSNP
rs112094397 960 dbSNP
rs929016877 967 dbSNP
rs535033614 969 dbSNP
rs867453916 977 dbSNP
rs1419515453 984 dbSNP
rs1166506489 988 dbSNP
rs191453001 991 dbSNP
rs1048820663 992 dbSNP
rs1238197682 999 dbSNP
rs1180631329 1004 dbSNP
rs1060359 1005 dbSNP
rs1187142425 1014 dbSNP
rs1246994835 1023 dbSNP
rs1459995604 1024 dbSNP
rs1240074667 1025 dbSNP
rs1199393672 1029 dbSNP
rs1317217465 1045 dbSNP
rs1012237066 1052 dbSNP
rs1229754585 1068 dbSNP
rs1356825542 1070 dbSNP
rs887406667 1071 dbSNP
rs1243294518 1072 dbSNP
rs1049122135 1076 dbSNP
rs538569106 1078 dbSNP
rs138201623 1079 dbSNP
rs1424230654 1083 dbSNP
rs1478084155 1093 dbSNP
rs1407391178 1094 dbSNP
rs749635015 1095 dbSNP
rs902144594 1099 dbSNP
rs997677026 1100 dbSNP
rs182498854 1103 dbSNP
rs1398173157 1104 dbSNP
rs1382470224 1107 dbSNP
rs72988304 1109 dbSNP
rs769205942 1121 dbSNP
rs554333084 1125 dbSNP
rs1001333652 1130 dbSNP
rs1223708004 1133 dbSNP
rs774422539 1140 dbSNP
rs1032434829 1144 dbSNP
rs762036204 1145 dbSNP
rs953323158 1147 dbSNP
rs959353139 1148 dbSNP
rs1355395381 1152 dbSNP
rs990857071 1160 dbSNP
rs1238711436 1170 dbSNP
rs990038783 1173 dbSNP
rs1022868721 1175 dbSNP
rs866877729 1181 dbSNP
rs150551849 1182 dbSNP
rs1315528740 1183 dbSNP
rs977162035 1189 dbSNP
rs981393234 1190 dbSNP
rs1194671968 1194 dbSNP
rs919058744 1197 dbSNP
rs1159509128 1199 dbSNP
rs1418530376 1208 dbSNP
rs201708171 1214 dbSNP
rs772185659 1215 dbSNP
rs1478315075 1216 dbSNP
rs1268172287 1217 dbSNP
rs1219907137 1226 dbSNP
rs1489153115 1230 dbSNP
rs537125043 1236 dbSNP
rs1218966264 1237 dbSNP
rs943038515 1238 dbSNP
rs1215470545 1240 dbSNP
rs1038699871 1246 dbSNP
rs371314973 1248 dbSNP
rs916822753 1250 dbSNP
rs1195732492 1251 dbSNP
rs371909145 1275 dbSNP
rs1368899695 1279 dbSNP
rs948259006 1281 dbSNP
rs1403417288 1287 dbSNP
rs1421470343 1289 dbSNP
rs1342800067 1290 dbSNP
rs1299247279 1302 dbSNP
rs558702832 1308 dbSNP
rs1453285173 1318 dbSNP
rs902092066 1321 dbSNP
rs577128509 1322 dbSNP
rs1415126268 1324 dbSNP
rs1428433619 1326 dbSNP
rs757099328 1329 dbSNP
rs1478650783 1331 dbSNP
rs1042663641 1332 dbSNP
rs902646505 1342 dbSNP
rs541364605 1345 dbSNP
rs1001074332 1346 dbSNP
rs1032424710 1348 dbSNP
rs1238901868 1360 dbSNP
rs548341946 1373 dbSNP
rs895254764 1384 dbSNP
rs1036441279 1389 dbSNP
rs901959414 1390 dbSNP
rs1320670492 1405 dbSNP
rs186871324 1408 dbSNP
rs796504058 1419 dbSNP
rs1304815741 1422 dbSNP
rs1448803386 1423 dbSNP
rs1028753709 1429 dbSNP
rs888965866 1444 dbSNP
rs1424324488 1457 dbSNP
rs575202528 1467 dbSNP
rs1011406913 1470 dbSNP
rs542478928 1483 dbSNP
rs1257750959 1493 dbSNP
rs1182115561 1494 dbSNP
rs568485861 1498 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acccgaaagaucagaGUCGAGa 5'
                         |||||| 
Target 5' -------------agCAGCUCa 3'
1 - 9
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760630. RNA binding protein: AGO2. Condition:AGO-CLIP-22RV1_A ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acccgaaagaucagaGUCGAGa 5'
                         |||||| 
Target 5' ---------ucccagCAGCUCa 3'
1 - 13
Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000409935.1 | 3UTR | AGCAGCUCAGGAGGCUGAGGCAGGAGAAUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
118 hsa-miR-3160-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066658 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT075318 SF3B3 splicing factor 3b subunit 3 2 4
MIRT077083 EIF1 eukaryotic translation initiation factor 1 2 2
MIRT100381 HSPA1B heat shock protein family A (Hsp70) member 1B 2 6
MIRT135259 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT184913 ZNF268 zinc finger protein 268 2 2
MIRT218862 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT446580 FPR2 formyl peptide receptor 2 2 2
MIRT448834 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT449455 RNF13 ring finger protein 13 2 2
MIRT452284 CARD8 caspase recruitment domain family member 8 2 2
MIRT452628 FAM162A family with sequence similarity 162 member A 2 2
MIRT453454 GLG1 golgi glycoprotein 1 2 2
MIRT454188 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 6
MIRT454434 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT454575 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT455555 TRAF1 TNF receptor associated factor 1 2 6
MIRT455841 MPL MPL proto-oncogene, thrombopoietin receptor 2 6
MIRT455969 BCAS4 breast carcinoma amplified sequence 4 2 4
MIRT456805 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457320 DUSP19 dual specificity phosphatase 19 2 2
MIRT457366 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT457684 ZNF587 zinc finger protein 587 2 2
MIRT458158 LYRM4 LYR motif containing 4 2 6
MIRT458641 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT459134 FADS6 fatty acid desaturase 6 2 2
MIRT459153 NARF nuclear prelamin A recognition factor 2 4
MIRT460460 NOM1 nucleolar protein with MIF4G domain 1 2 4
MIRT460974 STK17B serine/threonine kinase 17b 2 2
MIRT461439 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT461507 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 2 2
MIRT462490 GSR glutathione-disulfide reductase 2 2
MIRT462638 PHF5A PHD finger protein 5A 2 2
MIRT463279 ZFX zinc finger protein, X-linked 2 2
MIRT463360 ZFAND4 zinc finger AN1-type containing 4 2 2
MIRT465777 TMOD3 tropomodulin 3 2 2
MIRT466143 TMEM120B transmembrane protein 120B 2 2
MIRT468401 SETD3 SET domain containing 3 2 2
MIRT468998 RNPS1 RNA binding protein with serine rich domain 1 2 2
MIRT471574 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT472108 NME2 NME/NM23 nucleoside diphosphate kinase 2 2 2
MIRT472125 NME1-NME2 NME1-NME2 readthrough 2 2
MIRT473020 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT473083 MORN4 MORN repeat containing 4 2 2
MIRT475598 HMGB2 high mobility group box 2 2 4
MIRT475937 GXYLT2 glucoside xylosyltransferase 2 2 8
MIRT476117 GPR157 G protein-coupled receptor 157 2 2
MIRT476406 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT478003 DNAL1 dynein axonemal light chain 1 2 2
MIRT487969 IQSEC2 IQ motif and Sec7 domain 2 2 2
MIRT489418 TUBB2A tubulin beta 2A class IIa 2 2
MIRT491522 IL10RA interleukin 10 receptor subunit alpha 2 2
MIRT492673 PLEC plectin 2 2
MIRT493545 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT513085 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT514009 CECR2 CECR2, histone acetyl-lysine reader 2 4
MIRT516683 ZNF860 zinc finger protein 860 2 2
MIRT518392 ZNF250 zinc finger protein 250 2 2
MIRT522683 LUZP1 leucine zipper protein 1 2 6
MIRT524488 CEP97 centrosomal protein 97 2 2
MIRT527457 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT527705 IL17REL interleukin 17 receptor E like 2 2
MIRT531647 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT532381 UMPS uridine monophosphate synthetase 2 2
MIRT532588 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT533555 TPM4 tropomyosin 4 2 2
MIRT548371 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 4
MIRT550250 PVR poliovirus receptor 2 2
MIRT552555 ZFP36L2 ZFP36 ring finger protein like 2 2 4
MIRT554113 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT554131 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT561344 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT561638 RUNX3 runt related transcription factor 3 2 2
MIRT566497 PBX2P1 PBX homeobox 2 pseudogene 1 2 2
MIRT570583 OTUD7B OTU deubiquitinase 7B 2 2
MIRT572731 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT574041 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT575231 Fut1 fucosyltransferase 1 2 2
MIRT606811 BICD2 BICD cargo adaptor 2 2 2
MIRT621016 CLSTN3 calsyntenin 3 2 2
MIRT637852 PDCL3 phosducin like 3 2 2
MIRT640477 ZNF557 zinc finger protein 557 2 2
MIRT642827 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT643887 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT664874 PCNXL2 pecanex homolog 2 2 2
MIRT680528 PRIM2 DNA primase subunit 2 2 2
MIRT680648 KIAA1456 KIAA1456 2 2
MIRT680807 ZNF578 zinc finger protein 578 2 2
MIRT680921 STX2 syntaxin 2 2 2
MIRT681112 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT681147 INTS7 integrator complex subunit 7 2 2
MIRT681966 TFCP2 transcription factor CP2 2 2
MIRT684316 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT684906 GSG2 histone H3 associated protein kinase 2 2
MIRT685499 MED16 mediator complex subunit 16 2 2
MIRT685929 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686875 SLC25A32 solute carrier family 25 member 32 2 2
MIRT688204 FNIP1 folliculin interacting protein 1 2 2
MIRT688791 CCNB1 cyclin B1 2 2
MIRT689227 RPS19 ribosomal protein S19 2 2
MIRT690470 ZNF33A zinc finger protein 33A 2 2
MIRT691982 PLCXD1 phosphatidylinositol specific phospholipase C X domain containing 1 2 2
MIRT694006 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694529 TRIM72 tripartite motif containing 72 2 2
MIRT695420 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT695784 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT697799 UBXN2A UBX domain protein 2A 2 2
MIRT698275 TMEM2 transmembrane protein 2 2 2
MIRT698317 TMEM136 transmembrane protein 136 2 2
MIRT699971 RREB1 ras responsive element binding protein 1 2 2
MIRT700717 PNO1 partner of NOB1 homolog 2 2
MIRT701721 MTMR12 myotubularin related protein 12 2 2
MIRT701879 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT702959 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT706178 ZNF716 zinc finger protein 716 2 2
MIRT706463 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT718154 TTC33 tetratricopeptide repeat domain 33 2 2
MIRT718711 ANKRD18A ankyrin repeat domain 18A 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3160-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3160-3p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-3160-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3160-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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