pre-miRNA Information
pre-miRNA hsa-mir-6819   
Genomic Coordinates chr22: 36286847 - 36286907
Description Homo sapiens miR-6819 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6819-3p
Sequence 41| AAGCCUCUGUCCCCACCCCAG |61
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1279530967 2 dbSNP
rs967579979 3 dbSNP
rs776891214 4 dbSNP
rs771166635 8 dbSNP
rs747037324 9 dbSNP
rs879248090 11 dbSNP
rs1485325191 12 dbSNP
rs778157316 16 dbSNP
Putative Targets

Gene Information
Gene Symbol TMEM134   
Synonyms -
Description transmembrane protein 134
Transcript NM_001078650   
Other Transcripts NM_001078651 , NM_025124   
Expression
Putative miRNA Targets on TMEM134
3'UTR of TMEM134
(miRNA target sites are highlighted)
>TMEM134|NM_001078650|3'UTR
   1 TCGCGGCGCAGCGTGGACCCCTTGCGCCCATGGGGGCGCCCCTCTTGCCCTGTTCCGTTCCCCTCATCTCAAGGGAAGAG
  81 GCCCTCCAGGACCCTCGAAACCCCAGCCCCTAGGGAGTTTGCTCAGGAAGTTCGGGGCATGCAGGCCTGGCCCTGGGAAA
 161 GCCGCCCGTCGCCTGCTCTGTGCCTTAACTTATTCTCGGGCCGTGCGGCTGCTAGGTTGCTGTTATTTTGTGCTAATAAA
 241 AGAGTAATTAATTCCACCAGAGGCAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaccccacCCCUGUCUCCGaa 5'
                  |||| ||||||  
Target 5' catctcaaGGGA-AGAGGCcc 3'
65 - 84 132.00 -14.70
2
miRNA  3' gaccccaccccuGUCUCCGaa 5'
                      |||||||  
Target 5' aattaattccacCAGAGGCaa 3'
246 - 266 125.00 -10.10
3
miRNA  3' gaccccaccccUGUCUCCGaa 5'
                     |::|:|||  
Target 5' cccttgcgcccATGGGGGCgc 3'
19 - 39 94.00 -12.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31559645 38 COSMIC
COSN30115661 57 COSMIC
COSN16128382 78 COSMIC
COSN26551679 142 COSMIC
COSN6610945 593 COSMIC
COSN29526190 623 COSMIC
COSN21233391 784 COSMIC
COSN1136681 959 COSMIC
COSN29567369 985 COSMIC
COSN22462209 1002 COSMIC
COSN16064374 1043 COSMIC
COSN24181034 1848 COSMIC
COSN25673701 1918 COSMIC
COSN23761240 2144 COSMIC
COSN21829438 2352 COSMIC
COSN24514146 2436 COSMIC
COSN17630968 2459 COSMIC
COSN24179779 2726 COSMIC
COSN24179174 2821 COSMIC
rs11285778 1056 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1023744454 2 dbSNP
rs1343865735 4 dbSNP
rs1012729223 5 dbSNP
rs1274846012 7 dbSNP
rs752784445 8 dbSNP
rs1343395854 9 dbSNP
rs913948329 11 dbSNP
rs988181107 12 dbSNP
rs1221729127 13 dbSNP
rs1350357570 15 dbSNP
rs1306292658 16 dbSNP
rs1490789936 16 dbSNP
rs1411664132 17 dbSNP
rs1201825772 20 dbSNP
rs558149944 21 dbSNP
rs1333824611 23 dbSNP
rs1412974689 24 dbSNP
rs896497004 25 dbSNP
rs760636185 26 dbSNP
rs750303197 35 dbSNP
rs1478326575 38 dbSNP
rs1375225892 39 dbSNP
rs767417398 40 dbSNP
rs1179411850 43 dbSNP
rs574680500 44 dbSNP
rs1251905088 47 dbSNP
rs1209036475 49 dbSNP
rs1303123980 52 dbSNP
rs1364081378 56 dbSNP
rs1470332560 57 dbSNP
rs936648935 60 dbSNP
rs1303343008 62 dbSNP
rs925246125 62 dbSNP
rs963964953 64 dbSNP
rs975753703 64 dbSNP
rs187107929 71 dbSNP
rs1245112908 73 dbSNP
rs1289562288 83 dbSNP
rs537736977 84 dbSNP
rs951171630 90 dbSNP
rs1247440258 93 dbSNP
rs1485672204 95 dbSNP
rs753943098 110 dbSNP
rs1263908954 117 dbSNP
rs1025338763 120 dbSNP
rs995160542 133 dbSNP
rs1426878076 138 dbSNP
rs898149460 142 dbSNP
rs935570121 144 dbSNP
rs867472546 145 dbSNP
rs766067977 148 dbSNP
rs1002885028 154 dbSNP
rs1485201227 156 dbSNP
rs1043995424 157 dbSNP
rs946908810 159 dbSNP
rs536881138 163 dbSNP
rs570346753 170 dbSNP
rs905412111 171 dbSNP
rs922078919 180 dbSNP
rs975220626 183 dbSNP
rs1314954539 189 dbSNP
rs1322208940 197 dbSNP
rs1047149 198 dbSNP
rs1260868176 202 dbSNP
rs942417751 203 dbSNP
rs1183072203 204 dbSNP
rs912250649 205 dbSNP
rs375781888 206 dbSNP
rs951041703 207 dbSNP
rs1407671651 209 dbSNP
rs576673667 209 dbSNP
rs1399367446 212 dbSNP
rs1160775405 213 dbSNP
rs1388956160 217 dbSNP
rs1025554354 219 dbSNP
rs1334138520 220 dbSNP
rs973940383 224 dbSNP
rs1384432763 228 dbSNP
rs533907043 229 dbSNP
rs1278939410 233 dbSNP
rs962600698 234 dbSNP
rs977097783 236 dbSNP
rs1380285181 240 dbSNP
rs1225286292 241 dbSNP
rs1309340708 242 dbSNP
rs1330103341 245 dbSNP
rs1261334683 246 dbSNP
rs1023860456 248 dbSNP
rs1012350989 255 dbSNP
rs760753620 257 dbSNP
rs1453557630 258 dbSNP
rs12807484 261 dbSNP
rs12806130 262 dbSNP
rs1232829598 263 dbSNP
rs896522030 267 dbSNP
rs1179323515 270 dbSNP
rs566409463 272 dbSNP
rs202235639 274 dbSNP
rs965240372 274 dbSNP
rs999562008 277 dbSNP
rs140338269 280 dbSNP
rs57159660 280 dbSNP
rs912476110 281 dbSNP
rs548177724 282 dbSNP
rs1044025771 283 dbSNP
rs1308401008 286 dbSNP
rs761377193 289 dbSNP
rs946941397 290 dbSNP
rs529610690 303 dbSNP
rs1170247240 304 dbSNP
rs569535212 320 dbSNP
rs1039589901 321 dbSNP
rs113825526 322 dbSNP
rs1272837196 324 dbSNP
rs550531202 325 dbSNP
rs532023332 339 dbSNP
rs2511058 340 dbSNP
rs1490299754 345 dbSNP
rs929666292 348 dbSNP
rs762617873 352 dbSNP
rs918237296 353 dbSNP
rs973974515 355 dbSNP
rs1416847591 361 dbSNP
rs1411591058 366 dbSNP
rs1052576540 367 dbSNP
rs1000958715 369 dbSNP
rs117556422 370 dbSNP
rs1225044039 381 dbSNP
rs1333049703 385 dbSNP
rs74823155 387 dbSNP
rs1437210837 390 dbSNP
rs1269659346 394 dbSNP
rs1337606877 395 dbSNP
rs1323281932 401 dbSNP
rs572514231 402 dbSNP
rs1040145717 408 dbSNP
rs942707284 409 dbSNP
rs1359123239 410 dbSNP
rs916418715 411 dbSNP
rs1220725985 414 dbSNP
rs912496679 417 dbSNP
rs1451810575 418 dbSNP
rs1192114739 421 dbSNP
rs1050949917 423 dbSNP
rs929872729 429 dbSNP
rs1382162700 432 dbSNP
rs769574901 433 dbSNP
rs1422440266 436 dbSNP
rs1165250812 437 dbSNP
rs1334838247 447 dbSNP
rs1391257169 459 dbSNP
rs960563720 461 dbSNP
rs1406167719 467 dbSNP
rs1035142795 470 dbSNP
rs183368368 471 dbSNP
rs745637152 477 dbSNP
rs1324738291 488 dbSNP
rs1437409508 491 dbSNP
rs1298903579 493 dbSNP
rs1397553896 504 dbSNP
rs1244495651 516 dbSNP
rs1267605949 519 dbSNP
rs966729897 520 dbSNP
rs1022279496 521 dbSNP
rs1370502134 523 dbSNP
rs1448179331 527 dbSNP
rs1185413578 528 dbSNP
rs1188639504 528 dbSNP
rs542308280 528 dbSNP
rs112164815 539 dbSNP
rs980209974 540 dbSNP
rs900714494 541 dbSNP
rs1458835916 548 dbSNP
rs1393563997 551 dbSNP
rs574783319 552 dbSNP
rs1405529752 570 dbSNP
rs1451061463 571 dbSNP
rs772309459 579 dbSNP
rs762203252 586 dbSNP
rs137957890 593 dbSNP
rs770964057 596 dbSNP
rs1277336735 600 dbSNP
rs929696098 609 dbSNP
rs747137484 610 dbSNP
rs147311211 618 dbSNP
rs1459619527 631 dbSNP
rs1193651513 633 dbSNP
rs1037961473 635 dbSNP
rs1256805141 638 dbSNP
rs1489349211 639 dbSNP
rs1292172826 641 dbSNP
rs1221418615 651 dbSNP
rs1365381782 652 dbSNP
rs941294365 653 dbSNP
rs537775689 661 dbSNP
rs1283873422 662 dbSNP
rs916518574 665 dbSNP
rs57538070 666 dbSNP
rs1305072018 669 dbSNP
rs1403539638 672 dbSNP
rs1031177397 674 dbSNP
rs1342373934 698 dbSNP
rs1352786104 703 dbSNP
rs960847780 707 dbSNP
rs558344398 711 dbSNP
rs566119454 719 dbSNP
rs1234789731 724 dbSNP
rs533707454 726 dbSNP
rs1007325222 728 dbSNP
rs1336351135 729 dbSNP
rs191702635 730 dbSNP
rs1253670103 733 dbSNP
rs115410365 735 dbSNP
rs1183110889 738 dbSNP
rs1268490539 739 dbSNP
rs929905285 739 dbSNP
rs966763168 740 dbSNP
rs536335036 746 dbSNP
rs1461913590 752 dbSNP
rs1367882340 754 dbSNP
rs918466444 758 dbSNP
rs568899869 759 dbSNP
rs1304176540 760 dbSNP
rs1343273164 761 dbSNP
rs1424403248 762 dbSNP
rs1364320180 767 dbSNP
rs1388211034 768 dbSNP
rs1301357894 770 dbSNP
rs550568335 784 dbSNP
rs532061217 791 dbSNP
rs1470203755 792 dbSNP
rs564731978 794 dbSNP
rs1179252582 799 dbSNP
rs1342564162 801 dbSNP
rs1011291882 810 dbSNP
rs552743058 813 dbSNP
rs964737700 818 dbSNP
rs186856345 821 dbSNP
rs560730841 832 dbSNP
rs1221541527 837 dbSNP
rs532132884 841 dbSNP
rs1430738676 848 dbSNP
rs890634667 849 dbSNP
rs1489797146 850 dbSNP
rs1364172436 855 dbSNP
rs571195514 868 dbSNP
rs1360606205 882 dbSNP
rs916925827 883 dbSNP
rs1299651214 893 dbSNP
rs1365852555 898 dbSNP
rs1205583019 901 dbSNP
rs758584510 914 dbSNP
rs988436372 919 dbSNP
rs993879569 920 dbSNP
rs1206908590 926 dbSNP
rs1260174002 927 dbSNP
rs1236936889 932 dbSNP
rs541989768 937 dbSNP
rs374563551 941 dbSNP
rs1183560102 943 dbSNP
rs149251209 943 dbSNP
rs1038076010 956 dbSNP
rs941063354 958 dbSNP
rs894793383 961 dbSNP
rs1164990555 962 dbSNP
rs1284152185 967 dbSNP
rs562562509 984 dbSNP
rs1001467959 985 dbSNP
rs770508165 1002 dbSNP
rs1451784422 1003 dbSNP
rs1312892838 1004 dbSNP
rs1055481605 1007 dbSNP
rs968224434 1012 dbSNP
rs1320869280 1014 dbSNP
rs1316542828 1015 dbSNP
rs781750119 1020 dbSNP
rs939254330 1021 dbSNP
rs891178562 1025 dbSNP
rs538418353 1042 dbSNP
rs1383660365 1043 dbSNP
rs977883349 1044 dbSNP
rs1156350987 1045 dbSNP
rs1470661897 1051 dbSNP
rs544164297 1052 dbSNP
rs1029623165 1053 dbSNP
rs1407783924 1055 dbSNP
rs994128253 1056 dbSNP
rs11285778 1057 dbSNP
rs1160973720 1057 dbSNP
rs1332064839 1057 dbSNP
rs200818205 1057 dbSNP
rs398076006 1057 dbSNP
rs797012322 1057 dbSNP
rs1198158056 1058 dbSNP
rs1360832541 1060 dbSNP
rs897112194 1062 dbSNP
rs1297390350 1065 dbSNP
rs1370961010 1065 dbSNP
rs780022160 1067 dbSNP
rs182210760 1069 dbSNP
rs1329891171 1071 dbSNP
rs989560758 1077 dbSNP
rs1222990545 1080 dbSNP
rs965100588 1087 dbSNP
rs1017573400 1090 dbSNP
rs1193846068 1097 dbSNP
rs905716093 1099 dbSNP
rs775067965 1101 dbSNP
rs1482305415 1103 dbSNP
rs1446396398 1106 dbSNP
rs1259551161 1118 dbSNP
rs988144904 1123 dbSNP
rs1325760724 1124 dbSNP
rs1479785777 1127 dbSNP
rs1044587732 1128 dbSNP
rs372070809 1133 dbSNP
rs1414940347 1144 dbSNP
rs1169714616 1151 dbSNP
rs1368420691 1153 dbSNP
rs916999091 1155 dbSNP
rs1026447859 1165 dbSNP
rs993660170 1167 dbSNP
rs1351356416 1171 dbSNP
rs1436107707 1173 dbSNP
rs934299244 1175 dbSNP
rs117320030 1177 dbSNP
rs1017119665 1178 dbSNP
rs542020196 1183 dbSNP
rs572993941 1185 dbSNP
rs968677657 1187 dbSNP
rs1340428775 1196 dbSNP
rs894817330 1205 dbSNP
rs34474432 1216 dbSNP
rs1274841255 1225 dbSNP
rs535986366 1226 dbSNP
rs568940132 1227 dbSNP
rs1490080432 1228 dbSNP
rs1196355382 1233 dbSNP
rs1326413891 1239 dbSNP
rs985995801 1243 dbSNP
rs1478083402 1244 dbSNP
rs1185821389 1245 dbSNP
rs1388258289 1247 dbSNP
rs1316835948 1248 dbSNP
rs1431345265 1259 dbSNP
rs758166941 1260 dbSNP
rs906415374 1263 dbSNP
rs1454119609 1266 dbSNP
rs1406103229 1268 dbSNP
rs1042321874 1269 dbSNP
rs1321880762 1271 dbSNP
rs1332854234 1274 dbSNP
rs1175292191 1289 dbSNP
rs55708973 1291 dbSNP
rs1231330585 1293 dbSNP
rs117980672 1301 dbSNP
rs1359237196 1310 dbSNP
rs994159401 1314 dbSNP
rs989982447 1320 dbSNP
rs1017326981 1322 dbSNP
rs943441478 1326 dbSNP
rs1005473973 1328 dbSNP
rs752516683 1329 dbSNP
rs11603236 1330 dbSNP
rs1471699123 1332 dbSNP
rs576812706 1334 dbSNP
rs1161636059 1339 dbSNP
rs1393150103 1339 dbSNP
rs949854581 1345 dbSNP
rs954700710 1348 dbSNP
rs1319954679 1349 dbSNP
rs1386632678 1357 dbSNP
rs1474953509 1358 dbSNP
rs34142771 1361 dbSNP
rs571262080 1363 dbSNP
rs895597104 1372 dbSNP
rs1240354219 1375 dbSNP
rs552637508 1376 dbSNP
rs1243077372 1377 dbSNP
rs1189452701 1386 dbSNP
rs527974154 1394 dbSNP
rs1462725856 1395 dbSNP
rs140858633 1396 dbSNP
rs934373979 1397 dbSNP
rs1209221745 1399 dbSNP
rs972271934 1407 dbSNP
rs1440410933 1412 dbSNP
rs978801583 1420 dbSNP
rs138201605 1422 dbSNP
rs1275360108 1430 dbSNP
rs1158770435 1432 dbSNP
rs1215589948 1438 dbSNP
rs1016404665 1442 dbSNP
rs1005732557 1443 dbSNP
rs894857429 1447 dbSNP
rs1402133033 1448 dbSNP
rs530147737 1449 dbSNP
rs1394858335 1451 dbSNP
rs146994325 1455 dbSNP
rs544203019 1460 dbSNP
rs1003245683 1461 dbSNP
rs955528626 1466 dbSNP
rs906198312 1467 dbSNP
rs1286099835 1468 dbSNP
rs1228479701 1469 dbSNP
rs922714820 1469 dbSNP
rs1255283052 1472 dbSNP
rs972812586 1473 dbSNP
rs1042354615 1475 dbSNP
rs1382924281 1479 dbSNP
rs1009457093 1483 dbSNP
rs1482618426 1488 dbSNP
rs1181683018 1499 dbSNP
rs1449802333 1504 dbSNP
rs532415629 1510 dbSNP
rs1329117097 1512 dbSNP
rs1409161539 1518 dbSNP
rs1016936581 1524 dbSNP
rs1005961652 1526 dbSNP
rs1159980514 1530 dbSNP
rs1165423948 1534 dbSNP
rs1377204253 1544 dbSNP
rs1445129852 1546 dbSNP
rs970032251 1547 dbSNP
rs1053583786 1549 dbSNP
rs763554721 1551 dbSNP
rs116578816 1556 dbSNP
rs1174875204 1558 dbSNP
rs1403302405 1560 dbSNP
rs1409638483 1561 dbSNP
rs1305728348 1562 dbSNP
rs374041036 1564 dbSNP
rs1183125664 1585 dbSNP
rs1471847107 1588 dbSNP
rs540192277 1590 dbSNP
rs1234817180 1591 dbSNP
rs573065029 1595 dbSNP
rs370348053 1596 dbSNP
rs1256547269 1598 dbSNP
rs762526963 1601 dbSNP
rs1271272077 1605 dbSNP
rs1014120003 1607 dbSNP
rs919247206 1610 dbSNP
rs775271885 1617 dbSNP
rs1484155141 1620 dbSNP
rs1178034358 1624 dbSNP
rs554484226 1625 dbSNP
rs963574418 1626 dbSNP
rs1431537291 1628 dbSNP
rs542804564 1633 dbSNP
rs764794362 1642 dbSNP
rs1378727627 1643 dbSNP
rs376431422 1649 dbSNP
rs759417954 1656 dbSNP
rs776547792 1658 dbSNP
rs879141617 1667 dbSNP
rs1429451961 1670 dbSNP
rs1052910844 1671 dbSNP
rs998611990 1672 dbSNP
rs1429964170 1673 dbSNP
rs1292636044 1680 dbSNP
rs1387900885 1682 dbSNP
rs991640673 1684 dbSNP
rs1042769578 1687 dbSNP
rs943021656 1691 dbSNP
rs959120349 1692 dbSNP
rs1299503364 1701 dbSNP
rs1033476002 1707 dbSNP
rs1314952712 1711 dbSNP
rs771017413 1721 dbSNP
rs1205422575 1725 dbSNP
rs1265121028 1736 dbSNP
rs1003279850 1737 dbSNP
rs1253771798 1747 dbSNP
rs911509414 1747 dbSNP
rs1050414772 1755 dbSNP
rs1187273212 1758 dbSNP
rs1243228339 1766 dbSNP
rs970394092 1769 dbSNP
rs796739325 1774 dbSNP
rs1366364781 1775 dbSNP
rs575416981 1775 dbSNP
rs1293598271 1782 dbSNP
rs1440969104 1783 dbSNP
rs1432777603 1797 dbSNP
rs1322488017 1801 dbSNP
rs1365615855 1810 dbSNP
rs1009488089 1813 dbSNP
rs1312211858 1820 dbSNP
rs753655925 1825 dbSNP
rs1247346522 1827 dbSNP
rs1320131156 1827 dbSNP
rs972835484 1846 dbSNP
rs1304777229 1847 dbSNP
rs1207331500 1865 dbSNP
rs1425041758 1866 dbSNP
rs543327687 1873 dbSNP
rs1486364441 1880 dbSNP
rs557142517 1887 dbSNP
rs909947990 1889 dbSNP
rs984165328 1894 dbSNP
rs867085805 1895 dbSNP
rs1425152421 1900 dbSNP
rs1410514836 1901 dbSNP
rs7131041 1901 dbSNP
rs756143426 1902 dbSNP
rs1161206734 1904 dbSNP
rs1410186058 1904 dbSNP
rs1007431255 1905 dbSNP
rs1447280719 1905 dbSNP
rs1178028236 1906 dbSNP
rs144862706 1912 dbSNP
rs1014192180 1916 dbSNP
rs750539333 1916 dbSNP
rs1328527183 1917 dbSNP
rs1226662472 1918 dbSNP
rs959909563 1920 dbSNP
rs1318041894 1925 dbSNP
rs867968564 1925 dbSNP
rs1236062231 1926 dbSNP
rs1031512471 1927 dbSNP
rs1484453491 1931 dbSNP
rs1490614960 1946 dbSNP
rs1471294023 1948 dbSNP
rs773434718 1948 dbSNP
rs904306048 1952 dbSNP
rs1219934718 1956 dbSNP
rs1318221494 1957 dbSNP
rs1043185338 1962 dbSNP
rs571301386 1965 dbSNP
rs1051826730 1969 dbSNP
rs1370793866 1987 dbSNP
rs1408304315 1992 dbSNP
rs1284797819 1996 dbSNP
rs1290254695 1997 dbSNP
rs767751953 2001 dbSNP
rs933379756 2002 dbSNP
rs1374204987 2003 dbSNP
rs1405329807 2009 dbSNP
rs1277152587 2010 dbSNP
rs554752677 2012 dbSNP
rs1212065397 2017 dbSNP
rs550041578 2019 dbSNP
rs1051345752 2033 dbSNP
rs1183953494 2034 dbSNP
rs567117189 2039 dbSNP
rs909503481 2042 dbSNP
rs1189359081 2052 dbSNP
rs1427187067 2054 dbSNP
rs1454700860 2057 dbSNP
rs779257925 2057 dbSNP
rs765123099 2060 dbSNP
rs958927873 2066 dbSNP
rs1428037705 2070 dbSNP
rs1400176807 2077 dbSNP
rs73506004 2091 dbSNP
rs1355143743 2095 dbSNP
rs563746222 2099 dbSNP
rs970423732 2100 dbSNP
rs1235760546 2104 dbSNP
rs1020638505 2109 dbSNP
rs569104295 2113 dbSNP
rs1340546627 2114 dbSNP
rs1206798143 2115 dbSNP
rs1009270506 2123 dbSNP
rs957939423 2126 dbSNP
rs948802527 2129 dbSNP
rs1450471971 2139 dbSNP
rs761885295 2140 dbSNP
rs1190017199 2143 dbSNP
rs1468832917 2150 dbSNP
rs1487162502 2153 dbSNP
rs550701229 2158 dbSNP
rs1201048396 2165 dbSNP
rs774784792 2165 dbSNP
rs1214528794 2167 dbSNP
rs1326370765 2168 dbSNP
rs532453868 2169 dbSNP
rs1031585881 2171 dbSNP
rs185287375 2179 dbSNP
rs1322586626 2191 dbSNP
rs1396836738 2192 dbSNP
rs540586448 2199 dbSNP
rs1281187700 2200 dbSNP
rs1230077339 2201 dbSNP
rs1270356133 2202 dbSNP
rs1355202358 2204 dbSNP
rs1383682904 2208 dbSNP
rs528387126 2211 dbSNP
rs570991646 2212 dbSNP
rs536055068 2220 dbSNP
rs552668673 2221 dbSNP
rs1246115676 2222 dbSNP
rs1466039495 2224 dbSNP
rs1193620070 2227 dbSNP
rs1386473351 2229 dbSNP
rs542943340 2230 dbSNP
rs1178881348 2232 dbSNP
rs575552927 2234 dbSNP
rs1161732091 2235 dbSNP
rs1470402644 2241 dbSNP
rs61889864 2242 dbSNP
rs1174460717 2243 dbSNP
rs79451294 2244 dbSNP
rs1021437668 2246 dbSNP
rs1032282955 2247 dbSNP
rs1007876117 2254 dbSNP
rs1384489037 2258 dbSNP
rs748343518 2258 dbSNP
rs1340296808 2259 dbSNP
rs888968179 2260 dbSNP
rs1030098610 2261 dbSNP
rs888838903 2264 dbSNP
rs1334845060 2266 dbSNP
rs1227255307 2270 dbSNP
rs1265754368 2275 dbSNP
rs1352747916 2277 dbSNP
rs997560283 2277 dbSNP
rs763363544 2278 dbSNP
rs897880849 2285 dbSNP
rs1277632315 2289 dbSNP
rs749699948 2296 dbSNP
rs1036399518 2298 dbSNP
rs1185643823 2300 dbSNP
rs776187288 2319 dbSNP
rs1259883919 2325 dbSNP
rs942083727 2326 dbSNP
rs1475544304 2330 dbSNP
rs1420851471 2337 dbSNP
rs1186384804 2346 dbSNP
rs1455783383 2349 dbSNP
rs1401893478 2351 dbSNP
rs1463175354 2351 dbSNP
rs1244398358 2354 dbSNP
rs563460691 2362 dbSNP
rs1314265381 2363 dbSNP
rs780346180 2372 dbSNP
rs1355678721 2384 dbSNP
rs997128682 2393 dbSNP
rs147700584 2397 dbSNP
rs577637265 2398 dbSNP
rs1337071613 2403 dbSNP
rs1460634873 2404 dbSNP
rs1253868803 2407 dbSNP
rs1229422233 2414 dbSNP
rs1212774730 2415 dbSNP
rs1307793664 2420 dbSNP
rs1280854260 2421 dbSNP
rs1486102859 2422 dbSNP
rs928788648 2422 dbSNP
rs1183078517 2423 dbSNP
rs981572444 2423 dbSNP
rs1294791909 2425 dbSNP
rs1477358109 2426 dbSNP
rs1175909117 2429 dbSNP
rs1305827180 2430 dbSNP
rs1428683300 2430 dbSNP
rs888624936 2431 dbSNP
rs946188520 2431 dbSNP
rs913691928 2432 dbSNP
rs948817356 2432 dbSNP
rs1303846497 2433 dbSNP
rs988277175 2433 dbSNP
rs77475004 2434 dbSNP
rs992863512 2434 dbSNP
rs1266844126 2435 dbSNP
rs1481623009 2435 dbSNP
rs1491116283 2436 dbSNP
rs199849151 2436 dbSNP
rs112668609 2437 dbSNP
rs1396022259 2437 dbSNP
rs1462230465 2437 dbSNP
rs1491587388 2437 dbSNP
rs549685826 2437 dbSNP
rs56342374 2437 dbSNP
rs796907243 2437 dbSNP
rs1363156090 2438 dbSNP
rs1388009931 2439 dbSNP
rs868689482 2441 dbSNP
rs938652017 2442 dbSNP
rs1405704267 2443 dbSNP
rs76403910 2447 dbSNP
rs1225913624 2448 dbSNP
rs74565060 2448 dbSNP
rs1309476320 2452 dbSNP
rs1301315927 2453 dbSNP
rs1228476506 2463 dbSNP
rs1463862898 2470 dbSNP
rs1264919760 2487 dbSNP
rs7941752 2488 dbSNP
rs1170394109 2489 dbSNP
rs1448242926 2490 dbSNP
rs181074221 2495 dbSNP
rs573459455 2496 dbSNP
rs1264384347 2509 dbSNP
rs977762170 2511 dbSNP
rs188606654 2520 dbSNP
rs1414967734 2522 dbSNP
rs1443472942 2525 dbSNP
rs1253647444 2528 dbSNP
rs1387797942 2536 dbSNP
rs1197124181 2540 dbSNP
rs1290378655 2544 dbSNP
rs1362460368 2549 dbSNP
rs1382944988 2550 dbSNP
rs1312323664 2560 dbSNP
rs1353574494 2567 dbSNP
rs1235231874 2570 dbSNP
rs377571201 2583 dbSNP
rs1250512061 2585 dbSNP
rs1021887002 2604 dbSNP
rs1262812348 2612 dbSNP
rs1486414525 2615 dbSNP
rs1180852687 2616 dbSNP
rs1361569071 2617 dbSNP
rs1315634349 2618 dbSNP
rs1246893899 2619 dbSNP
rs985944488 2626 dbSNP
rs756644393 2630 dbSNP
rs1393315976 2657 dbSNP
rs1188036500 2660 dbSNP
rs1030023146 2661 dbSNP
rs953378960 2663 dbSNP
rs1030129540 2664 dbSNP
rs534205667 2667 dbSNP
rs1465366582 2668 dbSNP
rs1302427644 2679 dbSNP
rs1373855091 2680 dbSNP
rs1349122913 2681 dbSNP
rs1014515018 2689 dbSNP
rs186359734 2691 dbSNP
rs1164698231 2694 dbSNP
rs746548369 2695 dbSNP
rs1366154359 2719 dbSNP
rs1222523441 2726 dbSNP
rs566823932 2729 dbSNP
rs1006706780 2734 dbSNP
rs550740707 2735 dbSNP
rs181343327 2738 dbSNP
rs1278714835 2744 dbSNP
rs561810399 2753 dbSNP
rs1211214430 2763 dbSNP
rs1250358817 2765 dbSNP
rs1468186859 2781 dbSNP
rs938728060 2787 dbSNP
rs1490778826 2789 dbSNP
rs1432580415 2796 dbSNP
rs1171521472 2806 dbSNP
rs1377088792 2814 dbSNP
rs878877750 2816 dbSNP
rs924622611 2819 dbSNP
rs937614068 2821 dbSNP
rs1313748605 2822 dbSNP
rs1353940577 2829 dbSNP
rs1440128946 2851 dbSNP
rs1041687054 2872 dbSNP
rs1374680508 2876 dbSNP
rs1219196506 2884 dbSNP
rs1301671759 2884 dbSNP
rs947296179 2891 dbSNP
rs1234523721 2894 dbSNP
rs907485637 2897 dbSNP
rs1221585424 2900 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gaccccaccccugUCUCCGAa 5'
                       ||||||| 
Target 5' ------------aAGAGGCUg 3'
1 - 9
2
miRNA  3' gacCCCACCCCUGUCUCCGaa 5'
             |||| |    :|||||  
Target 5' caaGGGUUG----GGAGGCc- 3'
20 - 35
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000393877.3 | 3UTR | AAGAGGCUGGCUGAGUGAGCAAGGGUUGGGAGGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
108 hsa-miR-6819-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT358318 PANK3 pantothenate kinase 3 2 2
MIRT454719 UBQLNL ubiquilin like 2 2
MIRT471362 PEG10 paternally expressed 10 2 2
MIRT478101 DLG5 discs large MAGUK scaffold protein 5 2 4
MIRT495554 GOLGA6L4 golgin A6 family-like 4 2 2
MIRT495587 GOLGA6L10 golgin A6 family-like 10 2 2
MIRT508315 RPL18 ribosomal protein L18 2 4
MIRT529183 ADAM33 ADAM metallopeptidase domain 33 2 2
MIRT532035 FHDC1 FH2 domain containing 1 2 2
MIRT545131 ANXA5 annexin A5 2 2
MIRT567288 HNRNPL heterogeneous nuclear ribonucleoprotein L 2 2
MIRT568094 CEBPG CCAAT/enhancer binding protein gamma 2 2
MIRT573291 DLX4 distal-less homeobox 4 2 2
MIRT575169 Fam120c family with sequence similarity 120, member C 2 2
MIRT609495 DNASE1L3 deoxyribonuclease 1 like 3 2 2
MIRT611264 EHD3 EH domain containing 3 2 2
MIRT613580 POC5 POC5 centriolar protein 2 2
MIRT616520 C9orf170 chromosome 9 open reading frame 170 2 2
MIRT617098 ZNF667 zinc finger protein 667 2 2
MIRT618268 DDX51 DEAD-box helicase 51 2 2
MIRT618294 ZNF682 zinc finger protein 682 2 2
MIRT618617 SHOX short stature homeobox 2 2
MIRT619741 SRFBP1 serum response factor binding protein 1 2 2
MIRT619784 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT621119 SP110 SP110 nuclear body protein 2 2
MIRT622530 RAD51 RAD51 recombinase 2 2
MIRT623088 NME6 NME/NM23 nucleoside diphosphate kinase 6 2 2
MIRT623938 FKBP14 FK506 binding protein 14 2 2
MIRT624389 CD84 CD84 molecule 2 2
MIRT624860 ABI2 abl interactor 2 2 2
MIRT628752 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT632243 VTA1 vesicle trafficking 1 2 2
MIRT632987 E2F2 E2F transcription factor 2 2 2
MIRT633695 RBM43 RNA binding motif protein 43 2 2
MIRT633766 CENPBD1 CENPB DNA-binding domain containing 1 2 2
MIRT633808 ZNF91 zinc finger protein 91 2 2
MIRT638914 CBLN2 cerebellin 2 precursor 2 2
MIRT641298 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT642123 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT642179 HEBP2 heme binding protein 2 2 2
MIRT642617 CDKN3 cyclin dependent kinase inhibitor 3 2 2
MIRT643325 TMEM151B transmembrane protein 151B 2 2
MIRT644534 TMEM134 transmembrane protein 134 2 2
MIRT645820 OMA1 OMA1 zinc metallopeptidase 2 2
MIRT646093 MGST3 microsomal glutathione S-transferase 3 2 2
MIRT646861 SLC35E4 solute carrier family 35 member E4 2 2
MIRT647466 DZIP1L DAZ interacting zinc finger protein 1 like 2 2
MIRT647702 NADSYN1 NAD synthetase 1 2 2
MIRT648082 ZMIZ2 zinc finger MIZ-type containing 2 2 2
MIRT648547 TMEM169 transmembrane protein 169 2 2
MIRT648690 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT649747 GNB5 G protein subunit beta 5 2 2
MIRT650154 ZNF426 zinc finger protein 426 2 2
MIRT650450 CPXM2 carboxypeptidase X, M14 family member 2 2 2
MIRT650943 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT651544 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT652304 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT652890 SYVN1 synoviolin 1 2 2
MIRT654222 RNF19B ring finger protein 19B 2 2
MIRT654676 PSMB5 proteasome subunit beta 5 2 2
MIRT658249 FAXC failed axon connections homolog 2 2
MIRT658363 FAM65B RHO family interacting cell polarization regulator 2 2 2
MIRT659622 CELF1 CUGBP Elav-like family member 1 2 2
MIRT660171 BNIP3L BCL2 interacting protein 3 like 2 2
MIRT660634 ANKRD52 ankyrin repeat domain 52 2 2
MIRT662428 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT662984 PAK3 p21 (RAC1) activated kinase 3 2 2
MIRT663939 ZNF554 zinc finger protein 554 2 2
MIRT666960 PKHD1 PKHD1, fibrocystin/polyductin 2 2
MIRT667945 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT668847 CYCS cytochrome c, somatic 2 2
MIRT671792 RGS17 regulator of G protein signaling 17 2 2
MIRT672382 RPL37 ribosomal protein L37 2 2
MIRT673516 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 4
MIRT674716 FAM73A mitoguardin 1 2 2
MIRT676352 KLF8 Kruppel like factor 8 2 2
MIRT677820 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT678440 PDE4C phosphodiesterase 4C 2 2
MIRT678499 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT679243 LRP10 LDL receptor related protein 10 2 2
MIRT693607 SLC39A1 solute carrier family 39 member 1 2 2
MIRT695927 ZNF174 zinc finger protein 174 2 2
MIRT697987 TSPAN6 tetraspanin 6 2 2
MIRT700821 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT701350 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT702348 KLHL7 kelch like family member 7 2 2
MIRT703387 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT703883 ERBB2IP erbb2 interacting protein 2 2
MIRT708237 PPP1R26 protein phosphatase 1 regulatory subunit 26 2 2
MIRT708629 NUDT18 nudix hydrolase 18 2 2
MIRT708990 CABP4 calcium binding protein 4 2 2
MIRT709804 FOXE1 forkhead box E1 2 2
MIRT710203 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT710248 VAMP1 vesicle associated membrane protein 1 2 2
MIRT710281 FGF1 fibroblast growth factor 1 2 2
MIRT712992 IRGQ immunity related GTPase Q 2 2
MIRT713887 MOB3A MOB kinase activator 3A 2 2
MIRT715600 ADAM17 ADAM metallopeptidase domain 17 2 2
MIRT715639 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT715686 FRK fyn related Src family tyrosine kinase 2 2
MIRT717053 WIZ widely interspaced zinc finger motifs 2 2
MIRT717611 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT721539 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT722096 SUSD1 sushi domain containing 1 2 2
MIRT722435 HRNR hornerin 2 2
MIRT722855 NEGR1 neuronal growth regulator 1 2 2
MIRT724621 SNAP25 synaptosome associated protein 25 2 2
MIRT724777 PSG4 pregnancy specific beta-1-glycoprotein 4 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6819 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6819-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6819-3p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-6819-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-6819-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-6819-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6819-3p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-6819-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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