pre-miRNA Information
pre-miRNA hsa-mir-6501   
Genomic Coordinates chr21: 33550662 - 33550728
Description Homo sapiens miR-6501 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6501-5p
Sequence 3| AGUUGCCAGGGCUGCCUUUGGU |24
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
1055619 20 ClinVar
COSM5974214 5 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs756127353 5 dbSNP
rs764400023 6 dbSNP
rs753967693 8 dbSNP
rs1283296362 14 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol DFFA   
Synonyms DFF-45, DFF1, ICAD
Description DNA fragmentation factor subunit alpha
Transcript NM_213566   
Other Transcripts NM_004401   
Expression
Putative miRNA Targets on DFFA
3'UTR of DFFA
(miRNA target sites are highlighted)
>DFFA|NM_213566|3'UTR
   1 GCTACAGAGGAGGACATGCCCTGGGATGTAGTAGTATCATGCAGAGGTGTGTGGGCCCTTTTGTTCACCTCTGCAGACTG
  81 TGAATCCTAGCTGCCAGTTTGCCTATTATATGCCAAGGCATTTGCAAAAATCTCATTAATCTAAATCAAAATAGCTTTAA
 161 AGAAAAATGCATACACTTCCTCAGATCATCAAACAGACTCTGGTCCAAGGTTGGTAATGAAATGACTGTTCCTGACAGGG
 241 AGGAATAGCAGGGCCCAATCTTCTGAGATGGCTTCTGGGTCTTTCCATGGTCAGAGAAGATCTATAGTCCGTCCTGAGGT
 321 CTGTCAATGTCACAGGAAAAGGCAAACTTGAGGGGATCGTCGCCTGCTGGCTAAGACCAGGGAGCTAAAAACTTGAGGAA
 401 GGGAACCTGCCTGGGTGGGTGCTACTTCTGATTCATTGTCCTTGTCCCTGTCATAAGTACCTCCCTATTGTAGATAGAAG
 481 GGAAGGAAACTGTTGACTTGAGCTTGGCTAAATTTCCTGAAGGTGGAGGACCTTAGAGTTGCTCCAAGTAAACTTTCCAA
 561 GGACTTCTTCCTGTTGGTGTTGTAAGAAAAGGCCCATGCTTGTCCGGGCACAGTGGCTTACGCCTGTTAATGCCAGTACT
 641 TTGGGAGGCCGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGCGAAACCCCATCTCTA
 721 CTAAAAATACAAAAATTAGCCTGGCATGGTGGTGGGAGGCTGAAGCAAGAGAATCACTTGAACCCAGGAGGTGGAGGTTG
 801 CGTGAGCTAAGATCGCGCCACTGCACTCCAGCCTGGGCGACAAGAGTGAAACTCCGTCTTAAAAAAGCCCATGGCAGGCT
 881 GGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCGGATCACAAGGTCAGGAGATCGAGACC
 961 ATCCTGGCGAACACGGTGAAACCCCGTCTCTACTAAAAAAAATACAAAAAAATTAGCCAGGCGTGGTCGTGGGCACCTGT
1041 AGTCCCAGCTACTCAGGGGGCTGAGGCAGGAGAATGGCGTGAATCCGGGAGGCGGAGCTTGCAGGGAGCCGAGATAGTGT
1121 CACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAACAAAAAGCCCGTGGCAATTAATGGTAAAGGAAA
1201 CCCGGCATTTCAGTGTAAAGAGGTAACATAAACGGATACTGCCTCATTGCACTCCCCAAAAGAGAGTCAGGAGAGCAGCA
1281 GGAGAGGCGCACAGAAGGCCCAGTTCTCAGGGGTTTTTATTCTTGCTGCAGTTGGTTACCAAGGAAGACCCCAAAGCACT
1361 GGCTGTTGCCTTGAACTGGGACATAAAGAAGACGGAGACTGTTCAGGAGGCCTGTGAGCGGGAGCTCGCCCTGCGCCTGC
1441 AGCAGACGCAGAGCTTGCATTCTCTCCGGAGCATCTCAGCAAGCAAGGCCTCACCACCTGGTGACCTGCAGAATCCTAAG
1521 CGAGCCAGACAGGATCCCACATAGCAGCAGCGGGAAGTGTGCCAAGGAAGCTCTGTGGCGTTGTGTTATTGGTAGACACC
1601 CTCAGCCTCATCATTTGACTACCTATGTACTACTCTACCCCCTGCCTTAGAGCACCTTCCAGAGAAGCTATTCCAGGTCT
1681 CAACATACGCCGTTCCACCAATTTTTTTTTTAGCCCCACCAGCTTCAGGACTTCTGCCAATTTTGAATGATATAGCTGCA
1761 CCAACAATATCCCGCCTCCTCTAATTACATATGATGTTCTCTGTTCAAAAGTAATTGGCAGTGATTGGCCAGGCGCAGTG
1841 GCTCACGCCTGTAATCCCAGCACTGGGAGGCCGAGGGGGGCGGATCGTGAAGTCAGGAGATCGAGACCATCCTGGCTAAC
1921 ATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAAAATTAGCCAGCCATGGTGGCGGGCGCCTGTAATCCCAGCTACTT
2001 GGGAGGCTGAGGCAGGAGAATGGCATGAACCTGGGAGGCAGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGC
2081 CTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAGTAATTGGCAGTGACTATGGGCGCACTGCCTAAC
2161 ATTTAGCCCTGCCCCATATGGAACATGTTAAAAAAAAAAAAAGCCAGGCCGAGCGTGTTGGCTCACGCTTGTAATCCCAG
2241 CACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACGTGTTTTT
2321 ACTAAAAGTACAAAAAACTAGCTGGGCGTGGTGGCAGGAGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT
2401 TGCTTGAACCGGGGAGGCAGAAGTTGCAGTGAGCCGAGATTATGCCACTGTACTCCAGCCTGGGTGACAGAGTGACACTC
2481 TGTCTCAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugGUUUCCGUCGGG-ACCGUUGa 5'
            ||||   ||||| ||||||: 
Target 5' aaCAAA--AAGCCCGTGGCAATt 3'
1166 - 1186 148.00 -20.30
2
miRNA  3' ugguuuccGUCGGGACCGUUGa 5'
                  |||||: |||||| 
Target 5' ctgcactcCAGCCTGGGCAACa 3'
2069 - 2090 134.00 -18.50
3
miRNA  3' ugGUUUC--CGUCG-GGACCGUUGa 5'
            |||:|   || | |||||::|| 
Target 5' agCAAGGCCTCACCACCTGGTGACc 3'
1482 - 1506 130.00 -14.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
771301 1434 ClinVar
782903 1448 ClinVar
786715 1522 ClinVar
COSN30491719 21 COSMIC
COSN30588851 21 COSMIC
COSN30459852 24 COSMIC
COSN30156925 44 COSMIC
COSN30492084 48 COSMIC
COSN20073465 90 COSMIC
COSN30161961 162 COSMIC
COSN18848805 785 COSMIC
COSN19595056 861 COSMIC
COSN6500630 901 COSMIC
COSN7169406 1086 COSMIC
COSN7169404 1177 COSMIC
COSN18109607 1201 COSMIC
COSN28668099 1300 COSMIC
COSM6228535 1379 COSMIC
COSM4020070 1390 COSMIC
COSM9162734 1394 COSMIC
COSM7169173 1405 COSMIC
COSM212081 1416 COSMIC
COSM3688843 1420 COSMIC
COSM6642757 1427 COSMIC
COSM9654415 1429 COSMIC
COSM4769942 1442 COSMIC
COSM6315378 1447 COSMIC
COSM4403149 1455 COSMIC
COSM2116151 1467 COSMIC
COSM8690881 1469 COSMIC
COSM5977833 1476 COSMIC
COSM9660724 1483 COSMIC
COSM9619579 1489 COSMIC
COSM7879065 1495 COSMIC
COSM2116150 1515 COSMIC
COSM4020069 1516 COSMIC
COSM7452437 1522 COSMIC
COSN31514354 1552 COSMIC
COSN30649491 1580 COSMIC
COSN5995944 1596 COSMIC
COSN30483236 1599 COSMIC
COSN30752515 1679 COSMIC
COSN30100486 1683 COSMIC
COSN28852996 1701 COSMIC
COSN27583912 1702 COSMIC
COSN28203027 1980 COSMIC
COSN1086103 2190 COSMIC
COSN18990749 2445 COSMIC
rs142383097 1933 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs780122410 2 dbSNP
rs762873683 3 dbSNP
rs1254720876 7 dbSNP
rs1210065449 8 dbSNP
rs1308376686 20 dbSNP
rs756243629 26 dbSNP
rs1179401960 29 dbSNP
rs1217244897 32 dbSNP
rs969434444 34 dbSNP
rs750637697 36 dbSNP
rs775465307 37 dbSNP
rs1416645607 38 dbSNP
rs781432914 39 dbSNP
rs1300946449 44 dbSNP
rs202059186 47 dbSNP
rs373341798 49 dbSNP
rs1289307803 51 dbSNP
rs1228954461 59 dbSNP
rs1250146435 60 dbSNP
rs543339445 63 dbSNP
rs1277939555 67 dbSNP
rs1238802447 69 dbSNP
rs888310102 70 dbSNP
rs1267241730 71 dbSNP
rs576228613 74 dbSNP
rs1203364030 76 dbSNP
rs1027991914 83 dbSNP
rs554465673 86 dbSNP
rs993387387 91 dbSNP
rs1394373461 93 dbSNP
rs1025428406 100 dbSNP
rs1322379285 107 dbSNP
rs1265911728 109 dbSNP
rs368673670 114 dbSNP
rs993928494 117 dbSNP
rs1405372911 129 dbSNP
rs1392446048 131 dbSNP
rs897500286 132 dbSNP
rs776662341 138 dbSNP
rs1438888778 141 dbSNP
rs1380729029 152 dbSNP
rs1180254993 158 dbSNP
rs140650992 164 dbSNP
rs768671073 167 dbSNP
rs1458266795 171 dbSNP
rs1246053754 177 dbSNP
rs746959107 182 dbSNP
rs1453347710 192 dbSNP
rs1282457128 196 dbSNP
rs888887720 204 dbSNP
rs775333065 214 dbSNP
rs1299453183 215 dbSNP
rs1435345464 217 dbSNP
rs77891640 222 dbSNP
rs1311992989 233 dbSNP
rs750406747 240 dbSNP
rs553820785 245 dbSNP
rs1388847090 249 dbSNP
rs1275902630 250 dbSNP
rs915379587 251 dbSNP
rs1051153021 267 dbSNP
rs946988095 277 dbSNP
rs538676013 279 dbSNP
rs915438828 281 dbSNP
rs935574352 284 dbSNP
rs927966293 287 dbSNP
rs988313891 299 dbSNP
rs1160312130 303 dbSNP
rs1432564320 310 dbSNP
rs935455432 311 dbSNP
rs11121573 318 dbSNP
rs927713950 324 dbSNP
rs951972608 327 dbSNP
rs571534065 333 dbSNP
rs1449062407 339 dbSNP
rs1240538523 345 dbSNP
rs571422836 346 dbSNP
rs145882179 352 dbSNP
rs1453060916 354 dbSNP
rs1267982036 358 dbSNP
rs149855440 359 dbSNP
rs969488652 361 dbSNP
rs1018798749 362 dbSNP
rs1276129311 365 dbSNP
rs1360467875 373 dbSNP
rs1228737554 375 dbSNP
rs1275823586 381 dbSNP
rs1398847933 384 dbSNP
rs1341058246 387 dbSNP
rs1412730823 402 dbSNP
rs184768054 403 dbSNP
rs1023291458 405 dbSNP
rs1267995886 408 dbSNP
rs984483301 409 dbSNP
rs952668348 432 dbSNP
rs1025488851 444 dbSNP
rs1416158804 452 dbSNP
rs1331971262 455 dbSNP
rs1170065727 459 dbSNP
rs993980865 467 dbSNP
rs1323554976 470 dbSNP
rs180710967 470 dbSNP
rs1265642070 475 dbSNP
rs1186028713 476 dbSNP
rs1019017872 490 dbSNP
rs1403619394 501 dbSNP
rs1372537761 502 dbSNP
rs1238464795 506 dbSNP
rs1008978081 508 dbSNP
rs893984606 514 dbSNP
rs1308751513 516 dbSNP
rs188176909 520 dbSNP
rs1052587238 522 dbSNP
rs1217502102 528 dbSNP
rs139956763 529 dbSNP
rs1417656848 532 dbSNP
rs1377969470 545 dbSNP
rs1303281061 564 dbSNP
rs1449872731 570 dbSNP
rs1050453877 577 dbSNP
rs1330536142 581 dbSNP
rs1011288709 582 dbSNP
rs1162679960 584 dbSNP
rs894068820 589 dbSNP
rs745528864 591 dbSNP
rs779212696 594 dbSNP
rs1425925036 597 dbSNP
rs150617947 602 dbSNP
rs1478925836 605 dbSNP
rs1046682442 606 dbSNP
rs1377976505 608 dbSNP
rs1183974277 621 dbSNP
rs935507648 622 dbSNP
rs1238129374 629 dbSNP
rs1199863590 631 dbSNP
rs1489830914 637 dbSNP
rs145346082 651 dbSNP
rs1241976161 653 dbSNP
rs1205278894 656 dbSNP
rs1436665899 659 dbSNP
rs1270450532 661 dbSNP
rs1374331509 665 dbSNP
rs1046213170 666 dbSNP
rs1308222205 668 dbSNP
rs1447489088 674 dbSNP
rs1402355562 682 dbSNP
rs1220590009 683 dbSNP
rs61776039 685 dbSNP
rs984629335 690 dbSNP
rs1222263518 696 dbSNP
rs1438023499 697 dbSNP
rs916276552 705 dbSNP
rs1179633713 706 dbSNP
rs1251604197 714 dbSNP
rs983818133 727 dbSNP
rs952459582 728 dbSNP
rs918527013 731 dbSNP
rs1289465151 736 dbSNP
rs918651527 739 dbSNP
rs971946665 742 dbSNP
rs1223369337 745 dbSNP
rs972614552 746 dbSNP
rs1240600239 749 dbSNP
rs961849546 749 dbSNP
rs965220020 751 dbSNP
rs1299036498 757 dbSNP
rs1386309781 759 dbSNP
rs1018850982 760 dbSNP
rs1019405460 769 dbSNP
rs1295336052 786 dbSNP
rs1418159693 791 dbSNP
rs987316892 792 dbSNP
rs764415413 800 dbSNP
rs1421842358 801 dbSNP
rs12065251 802 dbSNP
rs1029461013 805 dbSNP
rs1198729215 812 dbSNP
rs1175483689 814 dbSNP
rs34372628 815 dbSNP
rs561196799 816 dbSNP
rs1414107162 817 dbSNP
rs893790679 820 dbSNP
rs1487144014 821 dbSNP
rs1284788213 822 dbSNP
rs1355530194 828 dbSNP
rs1254214539 831 dbSNP
rs1052715521 833 dbSNP
rs542430379 837 dbSNP
rs906738051 838 dbSNP
rs571887926 839 dbSNP
rs948192459 840 dbSNP
rs916351587 842 dbSNP
rs1298976905 843 dbSNP
rs1048601083 844 dbSNP
rs906693297 844 dbSNP
rs931023124 855 dbSNP
rs918247210 856 dbSNP
rs1379878323 861 dbSNP
rs1177977767 867 dbSNP
rs1476523253 868 dbSNP
rs1262052859 871 dbSNP
rs1193888580 874 dbSNP
rs1448344936 876 dbSNP
rs1253883716 879 dbSNP
rs370207143 880 dbSNP
rs1048416753 881 dbSNP
rs1317342487 882 dbSNP
rs545088578 883 dbSNP
rs184879957 884 dbSNP
rs556284665 885 dbSNP
rs538196571 886 dbSNP
rs192788301 887 dbSNP
rs369581230 888 dbSNP
rs958059061 889 dbSNP
rs534425353 890 dbSNP
rs1286000641 891 dbSNP
rs1448801711 892 dbSNP
rs567056631 893 dbSNP
rs1340118794 895 dbSNP
rs148038511 896 dbSNP
rs532107068 897 dbSNP
rs1200533734 898 dbSNP
rs1390556336 899 dbSNP
rs10864457 901 dbSNP
rs1283803022 902 dbSNP
rs1246045021 906 dbSNP
rs957942491 908 dbSNP
rs1400014753 910 dbSNP
rs529659905 913 dbSNP
rs1025625851 914 dbSNP
rs568910321 915 dbSNP
rs1472809151 916 dbSNP
rs1411145246 920 dbSNP
rs999243144 923 dbSNP
rs895292003 924 dbSNP
rs188602952 925 dbSNP
rs185283766 929 dbSNP
rs1238707052 930 dbSNP
rs1184144588 931 dbSNP
rs1289477469 932 dbSNP
rs192248643 933 dbSNP
rs1049119326 934 dbSNP
rs995554688 935 dbSNP
rs897113246 936 dbSNP
rs1315696913 939 dbSNP
rs187754130 941 dbSNP
rs1328881897 942 dbSNP
rs1228975300 943 dbSNP
rs1358734389 944 dbSNP
rs527522931 946 dbSNP
rs1156684877 948 dbSNP
rs1437530640 949 dbSNP
rs183400141 952 dbSNP
rs912497178 953 dbSNP
rs985760726 954 dbSNP
rs544755907 955 dbSNP
rs1166751106 957 dbSNP
rs578039455 958 dbSNP
rs1384065529 959 dbSNP
rs970492237 960 dbSNP
rs189659134 961 dbSNP
rs560907776 962 dbSNP
rs1031056891 963 dbSNP
rs978107030 964 dbSNP
rs959798189 965 dbSNP
rs1485063297 966 dbSNP
rs187766062 967 dbSNP
rs1481448742 968 dbSNP
rs776617387 968 dbSNP
rs11578995 969 dbSNP
rs1208377182 970 dbSNP
rs1036965916 971 dbSNP
rs1008170613 972 dbSNP
rs1358887853 973 dbSNP
rs575897900 974 dbSNP
rs138622972 975 dbSNP
rs1343175779 977 dbSNP
rs1027572380 982 dbSNP
rs1358559062 982 dbSNP
rs1295059941 983 dbSNP
rs768594778 984 dbSNP
rs150098472 985 dbSNP
rs1421910345 986 dbSNP
rs557239129 986 dbSNP
rs943728956 987 dbSNP
rs949028781 988 dbSNP
rs1359604487 991 dbSNP
rs890770700 992 dbSNP
rs1255617940 999 dbSNP
rs549820235 1000 dbSNP
rs1160351360 1003 dbSNP
rs1226440595 1003 dbSNP
rs201801359 1003 dbSNP
rs747516112 1003 dbSNP
rs932557705 1008 dbSNP
rs1315417509 1013 dbSNP
rs1397941750 1013 dbSNP
rs1454527402 1013 dbSNP
rs1330842186 1015 dbSNP
rs545568858 1019 dbSNP
rs566913213 1020 dbSNP
rs989988794 1022 dbSNP
rs577842573 1023 dbSNP
rs1300781111 1024 dbSNP
rs1438385080 1027 dbSNP
rs924047103 1028 dbSNP
rs978159478 1029 dbSNP
rs1390420614 1032 dbSNP
rs1218959704 1034 dbSNP
rs1169226407 1035 dbSNP
rs548911605 1036 dbSNP
rs1427684326 1042 dbSNP
rs183230038 1046 dbSNP
rs559972393 1047 dbSNP
rs1392074527 1054 dbSNP
rs551300586 1055 dbSNP
rs1008224596 1056 dbSNP
rs1291807247 1057 dbSNP
rs1436040692 1057 dbSNP
rs891121402 1058 dbSNP
rs1165933002 1061 dbSNP
rs1366350326 1061 dbSNP
rs1483386447 1061 dbSNP
rs1418232030 1069 dbSNP
rs564048284 1078 dbSNP
rs533118271 1079 dbSNP
rs371531170 1084 dbSNP
rs1027211376 1085 dbSNP
rs1188882612 1086 dbSNP
rs191311592 1087 dbSNP
rs997301283 1088 dbSNP
rs1223856665 1093 dbSNP
rs1351193424 1094 dbSNP
rs900344597 1096 dbSNP
rs995649012 1097 dbSNP
rs562871705 1098 dbSNP
rs1386276356 1102 dbSNP
rs745673166 1105 dbSNP
rs1042320206 1107 dbSNP
rs544680802 1110 dbSNP
rs186868469 1111 dbSNP
rs990602873 1113 dbSNP
rs937730572 1114 dbSNP
rs1455811565 1116 dbSNP
rs1376425506 1117 dbSNP
rs1199929542 1118 dbSNP
rs1479811135 1119 dbSNP
rs1453472674 1120 dbSNP
rs773939411 1127 dbSNP
rs890834900 1128 dbSNP
rs368814680 1130 dbSNP
rs11588905 1132 dbSNP
rs996490208 1137 dbSNP
rs1177637216 1139 dbSNP
rs11588506 1140 dbSNP
rs11578974 1141 dbSNP
rs1285221070 1144 dbSNP
rs1217051406 1145 dbSNP
rs1054356559 1148 dbSNP
rs11578972 1149 dbSNP
rs1384262006 1150 dbSNP
rs1472994463 1156 dbSNP
rs11578571 1157 dbSNP
rs1042535443 1163 dbSNP
rs1406199860 1164 dbSNP
rs1177894260 1168 dbSNP
rs1194337548 1168 dbSNP
rs1484377832 1169 dbSNP
rs893232096 1174 dbSNP
rs949505405 1177 dbSNP
rs748992357 1178 dbSNP
rs902312930 1182 dbSNP
rs1265085516 1191 dbSNP
rs1322486710 1203 dbSNP
rs182775126 1204 dbSNP
rs1013485106 1214 dbSNP
rs959379871 1216 dbSNP
rs1230125672 1217 dbSNP
rs1339107703 1218 dbSNP
rs1312394648 1222 dbSNP
rs920200766 1227 dbSNP
rs1335883198 1233 dbSNP
rs896166415 1244 dbSNP
rs1385526871 1255 dbSNP
rs1338204296 1257 dbSNP
rs1355104756 1280 dbSNP
rs759394129 1281 dbSNP
rs753338589 1285 dbSNP
rs765986425 1286 dbSNP
rs765233935 1287 dbSNP
rs760305037 1288 dbSNP
rs772982346 1289 dbSNP
rs1383301055 1293 dbSNP
rs1253467765 1298 dbSNP
rs1181729209 1299 dbSNP
rs1168173331 1301 dbSNP
rs771645842 1302 dbSNP
rs1240619314 1303 dbSNP
rs769258208 1306 dbSNP
rs1402361174 1308 dbSNP
rs759565708 1309 dbSNP
rs1461021859 1310 dbSNP
rs1244879537 1312 dbSNP
rs762198729 1321 dbSNP
rs370194873 1322 dbSNP
rs776863082 1323 dbSNP
rs769149703 1326 dbSNP
rs749779847 1327 dbSNP
rs780603438 1328 dbSNP
rs919710886 1330 dbSNP
rs769832519 1331 dbSNP
rs1354438803 1335 dbSNP
rs745995307 1342 dbSNP
rs757447705 1345 dbSNP
rs553045714 1348 dbSNP
rs747907798 1349 dbSNP
rs1326083532 1352 dbSNP
rs1459132321 1356 dbSNP
rs1366411583 1357 dbSNP
rs748625595 1362 dbSNP
rs778583526 1364 dbSNP
rs1362289264 1365 dbSNP
rs80153219 1366 dbSNP
rs753798140 1369 dbSNP
rs766477853 1376 dbSNP
rs755641615 1382 dbSNP
rs749984566 1387 dbSNP
rs1254038907 1388 dbSNP
rs767131713 1389 dbSNP
rs761386584 1390 dbSNP
rs375656224 1393 dbSNP
rs41301975 1394 dbSNP
rs140221027 1398 dbSNP
rs775953860 1401 dbSNP
rs770308299 1402 dbSNP
rs745904147 1403 dbSNP
rs1375799615 1405 dbSNP
rs1303857665 1411 dbSNP
rs17856222 1419 dbSNP
rs372939210 1420 dbSNP
rs747181944 1422 dbSNP
rs778099664 1424 dbSNP
rs1361903906 1427 dbSNP
rs755323383 1428 dbSNP
rs199935123 1431 dbSNP
rs137950953 1434 dbSNP
rs201880040 1435 dbSNP
rs749892835 1440 dbSNP
rs61776020 1442 dbSNP
rs1361995337 1444 dbSNP
rs145327902 1447 dbSNP
rs771034718 1448 dbSNP
rs78256349 1448 dbSNP
rs1279698733 1449 dbSNP
rs1240547449 1453 dbSNP
rs763254987 1454 dbSNP
rs775859944 1455 dbSNP
rs1283990731 1456 dbSNP
rs765663327 1459 dbSNP
rs75956311 1462 dbSNP
rs777251360 1467 dbSNP
rs770887537 1468 dbSNP
rs747165023 1469 dbSNP
rs773262047 1471 dbSNP
rs1382449529 1473 dbSNP
rs373650508 1474 dbSNP
rs749025715 1476 dbSNP
rs780008876 1484 dbSNP
rs1376567130 1488 dbSNP
rs974333971 1493 dbSNP
rs1408620307 1495 dbSNP
rs1174847483 1498 dbSNP
rs769771336 1500 dbSNP
rs781227271 1501 dbSNP
rs1164429161 1503 dbSNP
rs756698486 1505 dbSNP
rs1478916878 1506 dbSNP
rs747293530 1513 dbSNP
rs145486605 1521 dbSNP
rs140269107 1522 dbSNP
rs773704670 1522 dbSNP
rs765569556 1523 dbSNP
rs1279195328 1528 dbSNP
rs760010253 1530 dbSNP
rs1342543219 1532 dbSNP
rs754280896 1538 dbSNP
rs1219085466 1546 dbSNP
rs1319524414 1549 dbSNP
rs766935315 1551 dbSNP
rs760634852 1552 dbSNP
rs201613622 1553 dbSNP
rs1336638888 1554 dbSNP
rs1223760722 1555 dbSNP
rs376547736 1557 dbSNP
rs75387702 1571 dbSNP
rs566449644 1573 dbSNP
rs1429747810 1577 dbSNP
rs769678616 1579 dbSNP
rs367785591 1580 dbSNP
rs780941852 1581 dbSNP
rs1475538896 1584 dbSNP
rs1239299398 1585 dbSNP
rs1185585712 1587 dbSNP
rs1440629133 1589 dbSNP
rs551629851 1590 dbSNP
rs746433569 1594 dbSNP
rs777274602 1595 dbSNP
rs1177163081 1601 dbSNP
rs1481582822 1603 dbSNP
rs1489205757 1605 dbSNP
rs1032681782 1607 dbSNP
rs998490799 1618 dbSNP
rs934157543 1626 dbSNP
rs1291833478 1627 dbSNP
rs1244155946 1633 dbSNP
rs903117041 1636 dbSNP
rs1461212687 1639 dbSNP
rs796696895 1640 dbSNP
rs533015884 1641 dbSNP
rs1270416340 1649 dbSNP
rs1213811345 1650 dbSNP
rs1362433867 1651 dbSNP
rs1356853040 1663 dbSNP
rs1271659976 1668 dbSNP
rs1450367258 1674 dbSNP
rs1299285095 1679 dbSNP
rs1470984654 1681 dbSNP
rs1398426925 1684 dbSNP
rs562696115 1688 dbSNP
rs1014529550 1689 dbSNP
rs569152049 1691 dbSNP
rs3829642 1692 dbSNP
rs1244276957 1697 dbSNP
rs529412377 1701 dbSNP
rs1230633173 1712 dbSNP
rs967483860 1712 dbSNP
rs1203399783 1717 dbSNP
rs898545037 1719 dbSNP
rs1274940265 1721 dbSNP
rs1024377705 1726 dbSNP
rs1358708280 1731 dbSNP
rs1315608872 1734 dbSNP
rs1454474152 1736 dbSNP
rs1013464196 1738 dbSNP
rs1297625981 1745 dbSNP
rs1443208419 1753 dbSNP
rs1356487969 1756 dbSNP
rs960522071 1759 dbSNP
rs1424398860 1762 dbSNP
rs1002089062 1774 dbSNP
rs1438326192 1783 dbSNP
rs1405179031 1789 dbSNP
rs898176360 1791 dbSNP
rs532325691 1799 dbSNP
rs1422763685 1800 dbSNP
rs1392266301 1806 dbSNP
rs1168638910 1816 dbSNP
rs1234238508 1821 dbSNP
rs664947 1826 dbSNP
rs1038341001 1828 dbSNP
rs767375414 1831 dbSNP
rs562124006 1834 dbSNP
rs371959339 1835 dbSNP
rs1269455490 1836 dbSNP
rs1057026 1837 dbSNP
rs1224394526 1841 dbSNP
rs571516497 1842 dbSNP
rs1404522584 1846 dbSNP
rs564655542 1846 dbSNP
rs754025390 1847 dbSNP
rs934167444 1849 dbSNP
rs774097968 1851 dbSNP
rs1157801424 1852 dbSNP
rs1419125687 1853 dbSNP
rs1409482300 1854 dbSNP
rs975948572 1855 dbSNP
rs546709707 1856 dbSNP
rs936237521 1859 dbSNP
rs1235831805 1862 dbSNP
rs1346720832 1864 dbSNP
rs745828600 1865 dbSNP
rs1032735553 1868 dbSNP
rs977106678 1872 dbSNP
rs575793601 1873 dbSNP
rs557534118 1875 dbSNP
rs372395272 1877 dbSNP
rs1409576055 1880 dbSNP
rs1285652521 1881 dbSNP
rs977443811 1881 dbSNP
rs1014161891 1882 dbSNP
rs573414959 1884 dbSNP
rs1165962738 1886 dbSNP
rs894337574 1887 dbSNP
rs1429917108 1888 dbSNP
rs1469027972 1889 dbSNP
rs1135131 1891 dbSNP
rs1200794867 1894 dbSNP
rs995043656 1896 dbSNP
rs770774428 1900 dbSNP
rs756474659 1902 dbSNP
rs1261339950 1903 dbSNP
rs1234090835 1905 dbSNP
rs769292761 1906 dbSNP
rs1016801570 1907 dbSNP
rs747635394 1909 dbSNP
rs1436892196 1910 dbSNP
rs887102351 1911 dbSNP
rs1381223971 1912 dbSNP
rs1051822512 1913 dbSNP
rs934264334 1915 dbSNP
rs375616513 1916 dbSNP
rs533569552 1917 dbSNP
rs1263133108 1919 dbSNP
rs1039901078 1920 dbSNP
rs1241175453 1921 dbSNP
rs566113039 1922 dbSNP
rs936132634 1924 dbSNP
rs1398872734 1928 dbSNP
rs1194311937 1929 dbSNP
rs1384348570 1930 dbSNP
rs867427994 1932 dbSNP
rs1252327764 1933 dbSNP
rs142383097 1933 dbSNP
rs186083478 1934 dbSNP
rs1336332974 1935 dbSNP
rs967067202 1938 dbSNP
rs1382914552 1941 dbSNP
rs1479140117 1948 dbSNP
rs1335552028 1952 dbSNP
rs1389325036 1953 dbSNP
rs917216227 1955 dbSNP
rs1406529860 1956 dbSNP
rs1298587436 1958 dbSNP
rs1162875948 1959 dbSNP
rs1383111089 1959 dbSNP
rs1427514554 1959 dbSNP
rs1431369543 1959 dbSNP
rs1445109450 1960 dbSNP
rs1370278078 1961 dbSNP
rs1175683414 1964 dbSNP
rs1179747889 1965 dbSNP
rs1468136080 1967 dbSNP
rs569013535 1968 dbSNP
rs866451291 1969 dbSNP
rs992863748 1970 dbSNP
rs1410017024 1972 dbSNP
rs1247363571 1974 dbSNP
rs937416023 1975 dbSNP
rs182037207 1976 dbSNP
rs1230825547 1977 dbSNP
rs189424960 1980 dbSNP
rs994646746 1981 dbSNP
rs1363505455 1987 dbSNP
rs568592153 1988 dbSNP
rs867915966 1990 dbSNP
rs1017002686 1991 dbSNP
rs980667385 2000 dbSNP
rs1004251701 2005 dbSNP
rs199811240 2010 dbSNP
rs962852192 2011 dbSNP
rs1202126505 2013 dbSNP
rs1364411663 2020 dbSNP
rs1319276596 2025 dbSNP
rs1038171010 2030 dbSNP
rs1479546166 2032 dbSNP
rs1285500307 2039 dbSNP
rs547095340 2040 dbSNP
rs1051110526 2044 dbSNP
rs998566415 2049 dbSNP
rs1453891563 2050 dbSNP
rs528535323 2056 dbSNP
rs201652956 2058 dbSNP
rs1205018942 2064 dbSNP
rs564501986 2065 dbSNP
rs1288366583 2067 dbSNP
rs1317509400 2069 dbSNP
rs1453629387 2070 dbSNP
rs1229863056 2072 dbSNP
rs554529439 2075 dbSNP
rs1343254254 2076 dbSNP
rs1282466808 2077 dbSNP
rs1405309115 2079 dbSNP
rs1332798586 2082 dbSNP
rs1383305792 2086 dbSNP
rs1335873102 2087 dbSNP
rs1385775068 2093 dbSNP
rs1161377761 2094 dbSNP
rs1450121657 2094 dbSNP
rs1346905821 2095 dbSNP
rs1240675824 2096 dbSNP
rs1318811312 2102 dbSNP
rs1399680171 2103 dbSNP
rs1321035765 2105 dbSNP
rs74834298 2107 dbSNP
rs1165135346 2108 dbSNP
rs1369489212 2109 dbSNP
rs1268133701 2113 dbSNP
rs1444899066 2126 dbSNP
rs1200491903 2127 dbSNP
rs1365833548 2127 dbSNP
rs1405392652 2127 dbSNP
rs1450513748 2127 dbSNP
rs34862260 2127 dbSNP
rs749888591 2127 dbSNP
rs755559011 2127 dbSNP
rs765490469 2127 dbSNP
rs111443910 2128 dbSNP
rs1182148478 2129 dbSNP
rs1417819527 2137 dbSNP
rs1167699212 2139 dbSNP
rs1476062931 2141 dbSNP
rs1346464686 2143 dbSNP
rs982621864 2146 dbSNP
rs376299380 2147 dbSNP
rs531244397 2148 dbSNP
rs374537999 2149 dbSNP
rs1313513158 2152 dbSNP
rs1270704801 2154 dbSNP
rs186095987 2158 dbSNP
rs1342841704 2165 dbSNP
rs1445403466 2166 dbSNP
rs963852246 2173 dbSNP
rs1382145091 2178 dbSNP
rs1303433546 2186 dbSNP
rs1450543568 2189 dbSNP
rs1294007850 2190 dbSNP
rs1352969951 2194 dbSNP
rs1246751114 2202 dbSNP
rs1328664704 2203 dbSNP
rs1410853808 2203 dbSNP
rs34172830 2203 dbSNP
rs1444496449 2204 dbSNP
rs1018438656 2209 dbSNP
rs574668576 2211 dbSNP
rs1484063174 2214 dbSNP
rs1000403393 2215 dbSNP
rs1203608284 2218 dbSNP
rs1313111616 2221 dbSNP
rs1483273902 2226 dbSNP
rs1226401591 2227 dbSNP
rs555075697 2229 dbSNP
rs904658962 2231 dbSNP
rs1363811562 2247 dbSNP
rs1289433262 2254 dbSNP
rs1429908837 2255 dbSNP
rs181220021 2259 dbSNP
rs1304455449 2260 dbSNP
rs1372808359 2261 dbSNP
rs1424680852 2263 dbSNP
rs759954314 2264 dbSNP
rs1161281547 2265 dbSNP
rs1430727741 2269 dbSNP
rs1420646985 2270 dbSNP
rs542629883 2271 dbSNP
rs1425007693 2272 dbSNP
rs1186488496 2273 dbSNP
rs1176283377 2274 dbSNP
rs1472677139 2278 dbSNP
rs1474729995 2284 dbSNP
rs1219961477 2285 dbSNP
rs895834831 2286 dbSNP
rs1265932853 2296 dbSNP
rs1223625914 2299 dbSNP
rs900102291 2302 dbSNP
rs1283575588 2304 dbSNP
rs1352554953 2305 dbSNP
rs1281838383 2310 dbSNP
rs1404698332 2312 dbSNP
rs1040343510 2313 dbSNP
rs1295833269 2320 dbSNP
rs1452191804 2321 dbSNP
rs1342932879 2326 dbSNP
rs1157766659 2327 dbSNP
rs1457496897 2330 dbSNP
rs1413686371 2340 dbSNP
rs1197067123 2344 dbSNP
rs1490186712 2346 dbSNP
rs936185247 2347 dbSNP
rs149229825 2348 dbSNP
rs1206873420 2354 dbSNP
rs1041525111 2356 dbSNP
rs1309087663 2360 dbSNP
rs1295987593 2361 dbSNP
rs945779606 2364 dbSNP
rs535354570 2367 dbSNP
rs61776019 2379 dbSNP
rs1285043778 2380 dbSNP
rs1057185055 2381 dbSNP
rs1361853940 2383 dbSNP
rs1319361478 2385 dbSNP
rs937323351 2388 dbSNP
rs1390155868 2390 dbSNP
rs1173844922 2401 dbSNP
rs1405098287 2410 dbSNP
rs61776018 2411 dbSNP
rs1426717549 2415 dbSNP
rs1291484285 2435 dbSNP
rs530456889 2436 dbSNP
rs1038154860 2438 dbSNP
rs1466331753 2441 dbSNP
rs1241299771 2442 dbSNP
rs1203279080 2443 dbSNP
rs1354715088 2451 dbSNP
rs1170214656 2455 dbSNP
rs1225673512 2465 dbSNP
rs1299037923 2469 dbSNP
rs556947666 2470 dbSNP
rs1231197796 2473 dbSNP
rs1334038731 2476 dbSNP
rs535676247 2479 dbSNP
rs1402449685 2481 dbSNP
rs1408513133 2483 dbSNP
rs1432084099 2484 dbSNP
rs1200771400 2486 dbSNP
rs1460248066 2487 dbSNP
rs1480183931 2488 dbSNP
rs74709532 2488 dbSNP
rs764837996 2489 dbSNP
rs766876893 2489 dbSNP
rs941205802 2490 dbSNP
rs1179210735 2493 dbSNP
rs1383541677 2495 dbSNP
rs1481099380 2500 dbSNP
rs1250913482 2501 dbSNP
rs1203567380 2502 dbSNP
rs1194261204 2504 dbSNP
rs1207930510 2504 dbSNP
rs1243402629 2504 dbSNP
rs1258495693 2504 dbSNP
rs1424667792 2504 dbSNP
rs1491311323 2504 dbSNP
rs532954990 2504 dbSNP
rs58464882 2504 dbSNP
rs761327159 2504 dbSNP
rs775217510 2504 dbSNP
rs869150635 2504 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugguuuccGUCGGGACCGUUGa 5'
                  |||||: |||||| 
Target 5' cugcacucCAGCCUGGGCAACa 3'
10 - 31
2
miRNA  3' ugguuuccgucgggACCGUuga 5'
                        | ||:   
Target 5' -------------aUUGCGcca 3'
1 - 9
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000377036.2 | 3UTR | AUUGCGCCACUGCACUCCAGCCUGGGCAACAGAGCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
167 hsa-miR-6501-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT156859 FAM126B family with sequence similarity 126 member B 2 2
MIRT173355 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT369102 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT442037 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT442829 AZIN1 antizyme inhibitor 1 2 2
MIRT443729 CCND2 cyclin D2 2 2
MIRT453771 NUCB1 nucleobindin 1 2 10
MIRT453875 IFRD1 interferon related developmental regulator 1 2 12
MIRT454229 OSBPL10 oxysterol binding protein like 10 2 11
MIRT458829 RPUSD2 RNA pseudouridylate synthase domain containing 2 2 2
MIRT459898 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 10
MIRT464162 VMP1 vacuole membrane protein 1 2 15
MIRT495411 SMAD2 SMAD family member 2 2 2
MIRT496906 TRIM56 tripartite motif containing 56 2 2
MIRT498653 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 6
MIRT498706 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 10
MIRT499308 ZNF485 zinc finger protein 485 2 6
MIRT499707 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 10
MIRT499755 CIRH1A UTP4, small subunit processome component 2 6
MIRT499827 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT503691 MAVS mitochondrial antiviral signaling protein 2 2
MIRT512418 LAYN layilin 2 4
MIRT516232 RAB3B RAB3B, member RAS oncogene family 2 2
MIRT522554 MCAM melanoma cell adhesion molecule 2 4
MIRT523760 FBXO27 F-box protein 27 2 4
MIRT525107 PRKD2 protein kinase D2 2 2
MIRT525919 KIAA0391 KIAA0391 2 2
MIRT527246 COMMD6 COMM domain containing 6 2 2
MIRT527564 ADCY7 adenylate cyclase 7 2 2
MIRT528764 CD1D CD1d molecule 2 2
MIRT529362 YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta 2 4
MIRT529464 ZNF546 zinc finger protein 546 2 2
MIRT530676 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531635 C19orf52 translocase of inner mitochondrial membrane 29 2 4
MIRT531909 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 2
MIRT532172 SEC14L5 SEC14 like lipid binding 5 2 4
MIRT534234 SLC25A16 solute carrier family 25 member 16 2 4
MIRT534561 RRAGD Ras related GTP binding D 2 2
MIRT534971 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536738 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT538544 CELF1 CUGBP Elav-like family member 1 2 2
MIRT540462 ZNF71 zinc finger protein 71 2 2
MIRT540554 PPIC peptidylprolyl isomerase C 2 2
MIRT543593 KIAA1549 KIAA1549 2 2
MIRT543963 RNF20 ring finger protein 20 2 2
MIRT544047 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT544670 AP1S1 adaptor related protein complex 1 sigma 1 subunit 2 2
MIRT550665 TRAF1 TNF receptor associated factor 1 2 2
MIRT558540 CSNK1G3 casein kinase 1 gamma 3 2 4
MIRT574917 Vmp1 vacuole membrane protein 1 2 9
MIRT575298 Osbpl10 oxysterol binding protein-like 10 2 7
MIRT607960 SNX22 sorting nexin 22 2 2
MIRT610649 TIPRL TOR signaling pathway regulator 2 8
MIRT615899 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT617438 CCS copper chaperone for superoxide dismutase 2 2
MIRT617510 C5orf45 MRN complex interacting protein 2 2
MIRT617548 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT620565 WBSCR27 methyltransferase like 27 2 2
MIRT623166 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT624161 DGKE diacylglycerol kinase epsilon 2 2
MIRT626090 MKLN1 muskelin 1 2 2
MIRT627010 FIG4 FIG4 phosphoinositide 5-phosphatase 2 2
MIRT627073 SF3A1 splicing factor 3a subunit 1 2 2
MIRT627136 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT627340 TSHZ2 teashirt zinc finger homeobox 2 2 2
MIRT627436 TAS2R5 taste 2 receptor member 5 2 2
MIRT628273 CYB5D1 cytochrome b5 domain containing 1 2 2
MIRT629091 F2RL1 F2R like trypsin receptor 1 2 4
MIRT629282 UNC13A unc-13 homolog A 2 2
MIRT630122 ARHGEF5 Rho guanine nucleotide exchange factor 5 2 2
MIRT630247 SMTNL2 smoothelin like 2 2 2
MIRT631260 CENPM centromere protein M 2 2
MIRT631336 CD300E CD300e molecule 2 2
MIRT631399 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT632593 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT632991 DUSP18 dual specificity phosphatase 18 2 2
MIRT633079 CXorf21 chromosome X open reading frame 21 2 2
MIRT634223 TMEM132B transmembrane protein 132B 2 2
MIRT635046 MYH11 myosin heavy chain 11 2 2
MIRT636444 LRCH3 leucine rich repeats and calponin homology domain containing 3 2 2
MIRT636649 CDK4 cyclin dependent kinase 4 2 2
MIRT637129 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT637282 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT637527 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT637783 OLA1 Obg like ATPase 1 2 2
MIRT637920 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT638238 SLC1A5 solute carrier family 1 member 5 2 2
MIRT638444 PLXDC2 plexin domain containing 2 2 2
MIRT639765 GPR45 G protein-coupled receptor 45 2 2
MIRT640437 ERVMER34-1 endogenous retrovirus group MER34 member 1, envelope 2 2
MIRT643006 ZNF829 zinc finger protein 829 2 2
MIRT644233 SLC35E3 solute carrier family 35 member E3 2 2
MIRT644661 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT644957 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT645086 SLC35E2B solute carrier family 35 member E2B 2 2
MIRT645256 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT645861 GBP6 guanylate binding protein family member 6 2 2
MIRT645987 ACP6 acid phosphatase 6, lysophosphatidic 2 2
MIRT646502 FAM217B family with sequence similarity 217 member B 2 2
MIRT646811 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT647706 NFX1 nuclear transcription factor, X-box binding 1 2 2
MIRT649657 TEP1 telomerase associated protein 1 2 2
MIRT650550 YIPF4 Yip1 domain family member 4 2 2
MIRT650785 GSR glutathione-disulfide reductase 2 2
MIRT651461 XIAP X-linked inhibitor of apoptosis 2 2
MIRT652098 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT654117 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT658901 DPY19L4 dpy-19 like 4 2 2
MIRT659370 CREG2 cellular repressor of E1A stimulated genes 2 2 2
MIRT662537 MTAP methylthioadenosine phosphorylase 2 2
MIRT662617 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 2
MIRT663491 IYD iodotyrosine deiodinase 2 2
MIRT663899 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT664552 MKI67IP nucleolar protein interacting with the FHA domain of MKI67 1 1
MIRT664582 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT664953 PTCD3 pentatricopeptide repeat domain 3 2 2
MIRT665193 ESF1 ESF1 nucleolar pre-rRNA processing protein homolog 2 2
MIRT665446 WDR17 WD repeat domain 17 2 2
MIRT665894 TCEANC2 transcription elongation factor A N-terminal and central domain containing 2 2 2
MIRT666480 SBNO1 strawberry notch homolog 1 2 2
MIRT666514 RNF170 ring finger protein 170 2 2
MIRT666692 RBM23 RNA binding motif protein 23 2 2
MIRT666791 PSMD1 proteasome 26S subunit, non-ATPase 1 2 2
MIRT667453 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT667553 LRAT lecithin retinol acyltransferase 2 4
MIRT667744 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT668080 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT668114 GK5 glycerol kinase 5 (putative) 2 2
MIRT668501 ESYT2 extended synaptotagmin 2 2 2
MIRT668942 CNKSR3 CNKSR family member 3 2 2
MIRT670408 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT671134 CD226 CD226 molecule 2 2
MIRT671919 PLEKHS1 pleckstrin homology domain containing S1 2 4
MIRT672287 GP2 glycoprotein 2 2 2
MIRT672427 POLR2D RNA polymerase II subunit D 2 2
MIRT672762 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT672923 LRRC2 leucine rich repeat containing 2 2 2
MIRT673150 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT673309 UBE2G2 ubiquitin conjugating enzyme E2 G2 2 2
MIRT673560 PLA2G16 phospholipase A2 group XVI 2 2
MIRT673895 DCTN6 dynactin subunit 6 2 2
MIRT674513 PRR23A proline rich 23A 2 2
MIRT674614 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT674747 SLC16A1 solute carrier family 16 member 1 2 2
MIRT675693 PIWIL1 piwi like RNA-mediated gene silencing 1 2 2
MIRT675890 SNAP29 synaptosome associated protein 29 2 2
MIRT685271 KIAA1143 KIAA1143 2 2
MIRT686057 KCNA7 potassium voltage-gated channel subfamily A member 7 2 2
MIRT693886 C3orf62 chromosome 3 open reading frame 62 2 2
MIRT695594 TMEM199 transmembrane protein 199 2 2
MIRT696592 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT698041 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT699907 RUNDC1 RUN domain containing 1 2 2
MIRT706608 CYB5B cytochrome b5 type B 2 2
MIRT706628 PNPT1 polyribonucleotide nucleotidyltransferase 1 2 2
MIRT706640 NCBP2 nuclear cap binding protein subunit 2 2 2
MIRT706676 COL13A1 collagen type XIII alpha 1 chain 2 2
MIRT706723 RFK riboflavin kinase 2 2
MIRT706857 MAFF MAF bZIP transcription factor F 2 2
MIRT706891 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2 2
MIRT706958 FANCC Fanconi anemia complementation group C 2 2
MIRT706976 XPO5 exportin 5 2 2
MIRT707010 RRP36 ribosomal RNA processing 36 2 2
MIRT707028 ACTR5 ARP5 actin related protein 5 homolog 2 2
MIRT707068 MED29 mediator complex subunit 29 2 2
MIRT713253 ZFP30 ZFP30 zinc finger protein 2 2
MIRT719130 NR2F6 nuclear receptor subfamily 2 group F member 6 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6501 Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-6501 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-6501-5p Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6501-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-6501-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-6501-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-6501-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6501-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-6501-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6501-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6501-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-6501-5p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

Error report submission