pre-miRNA Information
pre-miRNA hsa-mir-6509   
Genomic Coordinates chr7: 135206994 - 135207078
Description Homo sapiens miR-6509 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6509-3p
Sequence 52| UUCCACUGCCACUACCUAAUUU |73
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs778601614 1 dbSNP
rs754554776 3 dbSNP
rs767798995 3 dbSNP
rs145322812 4 dbSNP
rs773941257 5 dbSNP
rs768273593 9 dbSNP
rs984565062 12 dbSNP
rs748872915 13 dbSNP
rs774861125 14 dbSNP
rs13241975 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF275   
Synonyms -
Description zinc finger protein 275
Transcript NM_001080485   
Expression
Putative miRNA Targets on ZNF275
3'UTR of ZNF275
(miRNA target sites are highlighted)
>ZNF275|NM_001080485|3'UTR
   1 CCTCATCAAGCACCGGCGCATCCACAGCGGACTGAAACCCTATGAGTGCGACAAATGCGGCAAGGCCTTCCGCCGGAGCT
  81 CCGGCCTCAGTCGCCACCGGCGGATCCACAGTGGGGCGCGGCGCTGCGAATGCAGCCAGTGTGGCCGCGTGTTCAAGAGG
 161 CGCTCGGCACTGCAGAAGCATCAGCCAACCCACCACGAGTAGAAACGCCCTGTGGTCCCGCGGGACAGGGACGGAGTCCC
 241 CAGAGGGGATGGCAGAGTCAAAGGAGATGAACAGTTTTGTAGCGCTTATATATTTTGTCTTCCAAAAGGTTGAGACCGAT
 321 TTATACTGCCACCAGCAATTTATAAGTGTTACGTTATGCCCATCAAGAGTAGCTTGTACCATTTAACTTAGTTTGGCTAG
 401 TTTAACTGGTAGGAAGTACCATCAAGGTATTTCAGTCCACATGCCTTGAATCCAAGAATGAGAGAGGACAAATCTGGATG
 481 TGGGGTAGGGAGGGGCTTAGAGGTCATCAACTCCAAGCTCCCCCCGCCCCAGAGAAACACACAGAGCTGTTCCACGATGG
 561 CGTCCTCATAATGTGATCCCAGCTTTCCTGAAGAGAACGTTGCCCTCATGATTTTTGGCCTACTTGAATTTATAAATTTT
 641 TAGGGATGTAAATAGAACACTCAAATGTCTTAAAATATTTAATTTATTAATTTAGTTATACATACATACTGTAAATCACA
 721 TATTATATAAAATAATATATTAATTTAGAAAATACCCCATTTTTGCCACCCTCCCTTTCACGAAATCATTTTACTCTGAC
 801 TCCTCACCGTCTTCACCAACATGGGAACCCTGTTTGAGTCATCAGACAGTTTCAAGACACACCCAGTCACTTCCATCCGA
 881 GCTCTGCACGGTCGCTCAGTGACGATCCCTTCATGAGGCTCTCATTAGAAATTTTCTCCCAAGCCATAAGACCATATTTG
 961 CAGAACATTAGGACGATTTCTCTTGTCGTTTTTTAATCTGTCCTGTGACTGTACAATATAACCACTTAAGGTCATACTTT
1041 TTCAAACAACCTTTAAACGTCTTTTCTTTTAAAGCACCCAAAATGTCATTGTGAGGCCAAACGCCTAGTAACAGTTACTG
1121 AATCTGGGTTAAATGTCGGTATCTTTTTTTCTTAAACCATTTCAATTTGGTGTCCCCTATACATATCCAAAACTAGCATC
1201 GATTGGGGTTGTTTTGAACTAATGGGTCTTGTCCTCAAGCAGCACTATTTTGTTCAAAATAAAATAGTTGAGAGCATGCC
1281 CCTAAGAAGAGATACATCTCAAGGACTCAAGTGCAGGGTGACGCCTCCTTTTGGAAATGAGCCTCTCCTGGTATCAGGCC
1361 TAGATGGTACTTCTCCAGCCTTCCGTTTCTTGTTCTATAAAACAGGGGTGATCACAGCACCTACCTCCGAAGGTTATCAC
1441 GAGGACTGCCATCGTGGCTGCAGAGTGCCAGGACCACCGGCCTGGTATGGAGGTACACACTCAGTGAAGGCCATCTGCTG
1521 TCATTGTCATTGTCATAGTTATTGCCGTCATTCTGTGGCTTGTCAATTCCAGAACTGGGGATAGACCCCAGGCCTCCTGA
1601 CCACCAGTCTCATCTTTCTCTTATGCGATGACTTAAATGGTGTTTCTGTTTTTTGCATGCAAATGGTCCGTTCATCTCCT
1681 TTGACTAGTTATCAACTTACCTTCGGATATATTAACTTTATGTAGCAGTTCTTTCTATATTGATGGTGATGTTCTCTTTT
1761 CCAATTTTATTGCTTTGCTTTTTGTAGCAGTTTTATTACGTTTTTGTTGTGAAAGCTTTTAATTTTTACATATCCAAGCA
1841 TTCATTTTTTGTCCACTCAGTCATAACTTTCATTGCTTCTGTAGCTAGATATGATGACATTTTCTCTAGAATTTTAATTA
1921 CAAACAAAAAGCTGCAACCCCAGCCCATCAGAAGGTGAGTACACCAGGTGGGCAGGCTGGATGGAAATGGGCCAGAGAAG
2001 CAGGCTCTTTCCTCATCCGAGATGCGGACTCCCTGTCTATCTGTGGGCACCACTTGACTATCCAACCTGACCACTGCGGC
2081 ACACTGGAGATGCTCCCATCATAGATTAGCCAGAACTCTGTGACTGCTCATCATTATAGACCCCGCCAGCAGCAGTGGGG
2161 CTTGGCCTCACCTAGATCAATGGAGTGGTCCAAACTTGGTCTGGGAGCAAGCAGCCCAGCCATCCTTTGAGCTCCTGGGA
2241 GCCTTGGCAATGCTCCGAGTGGATTCAGTGACTGAGCAGCAGATTCACCCAAGAAACATCTCCTTGGACACAAGAAGACT
2321 TGCCTAGACCACATCCTCCTTTCAGCCGGTGACTCTAGAACTAGAAAGAGATTGGTTCATAGGCTTCTGCTGTGGGCAGC
2401 TAGGGGAAAATTCACCCATGTGTTCTGGCATCACTTCCTATAGCCACACCTAAGTGAGGGCAACAGAGCAGAGGCTCGGA
2481 GAGGAACCCTGCCCCTCCGATGGCTTGTGCGTTATGCTGATAGAAGCTGGCAGCACTGCCCTGGGCTATGATTTGCAACA
2561 GCCATGCCCAGGAGGAGCACTAAAGCAAAGGTTTGGAGGGCAGTGGAACCCTTCTGAAAGCCTGTGTGGCATAGAAGTAG
2641 AAGCTGGTCCTCCTGGGTCTGAGCTACCATTTCCAGTGGGCTCCCCCAAGAGGAACAGCAGCAAGGGCTAGCGAGGAACC
2721 TGCCCCTCCAGTGGCCCACAGAAGCCACAGATAGAAGCCAGCCCCACCAGGGCTGTGCTGTGACTTCCCAGCAGCTGTGG
2801 CTGGGGACAGGGACACTAGGAGGGCCTGGCAAGGAAGTGTGCCCTTCTCGTGGGCCCACCAAGGCTGAGGCAGAGCTTCC
2881 TAGCAGACACAACTTGGAAGGGCTTCTCAGGCACCCATCCTGACCCCCAGGCTGGAGAGGAGCCAAAAGCACTTGTTACA
2961 TAGTGATTCCTTTTGCCCTGTGGGCCTCAGTTCTTGCAGTAGTTGTGAATCTGTGTCTGAAATCACTACTTTCTTCTCGG
3041 ATCCTTTTTCTCTTTTCGAGTTGTTAGGATGTGTTTTGTACAGCTGTCATTTGATAAAGAAGGTTGACCTCTACCAGGGG
3121 CAAGTCTGGCACCTTTACCTAGAAGTACTCTGCCATGTCTTGCCCGTTCATTTATCGTTTGTTGGGTTTCATGAGGGATC
3201 CCATTGAAGTAGATCCCTTTTATGAAGGGATCCCATTGAATGCAGCATTAACTCAGAACGTAGCATAAAGTCGTCACTGC
3281 TCCCAGCTGGGACGTGGTGTCTTGGCATCCCTTCCTGCCGTCCTTGACTCTTTCCCATCTTCAGTTCTATAATTTTCTCC
3361 CAAACAAATGCTCTTTTAGAGTTAACACTAAAGATCTGGTCTTTGCCGTCAAGGTTGACAGAACAGCTGTTCATGGTGTT
3441 TGCGGTGAAACCCGTGTTCTCTTTCAATGCAGTCTGTGGCTTTAACGTGTGTCCTGTAATTTCGCCAAGATCATTTCTTG
3521 CCTCTGGTAACTTGGGGGTGGATTTCCTTGGGCTCTCTAGGTGTACTGCTATGTCAGATGCAAAATGTCACCCAGCTTCC
3601 TGTCACATATCCTTGTCTGTGCATTCATGCATCTACCTCATTCCGGTTTTCTTTCTAATCTCATGTATTCCTGTTGTGAG
3681 GAAATGTGTTCTTTTCCCGATCCTTTTGTAGTTCATACACATGACAATTGGGTTTCCACGCACGTGCATGAGATGTTCCT
3761 CCTTCAAACCTTGTTACTATGTCAGCACATTAACTGCCTGGCATGGAAAAAGAAAAAAAAAAAAGAAATATGTTCTTTTC
3841 CTACCATTTGAAAAAAATCCTCCATTGCTTTTATTAGAGTTTTGAATACTTGTGAAAATTTTCAAAAGAAAGTAATTGAT
3921 TACCATTTTTGCTGCTTATTACGATGAGCTGTGTCCATTAGCTGTGTCACCCCACTCTTGCATTTCCAGAATAGTCCCTA
4001 CCCAATTGCAGCGGGCATGTTTTTGAGTGGTGTTGCATTCCATGTGCTTGATTTTGTCCTAGAACTGGCACAGCGCCTGC
4081 CCTACCTGCAGCCCTGGGTTGTGGCCCTGTTGCGTACCATGTGATTTGCCACCCCGCTTCTAGGCCATATTAATTCAGCC
4161 AGAACTGAACACCTGACCCAAGGGCAGCAAGCAATCATCAGAGCATAGAGCTGACAGAACATGATGGACCACGGACACCA
4241 CCAGGCCTTCCAGATCTGAAATGCAAACAAGGAAACAGAAGCTTCTAGGCATCAGAAGGTGTGGGGAGCAGCACAGTACT
4321 CAGAGGAGTGAGGAGCGTGGCGCCTGCTGGGAGGAAGGCCTGGCCATGGTATGTTCTTGGATTTCTGGCAGCAGCCCTCA
4401 TTGGTCCACGTGCGTCCCCACTACAGACTCCTTGACTTGAGCCAGCTTGAGTGGGTCTCTACTCTTTTCTATTGTGTTTT
4481 GCCACTTGGCTGCTTCCTGGCCAAGTCGCACCTGACTGCATGAACACCTGTTCAAACGTGTGTTCTCTGTTCTCTAAGAT
4561 GGGTGAAAGTCGATGCCTTCTAGTCTCAGTGAATTTAACCTGTGATTTTATGTCTACGTATATTGTTCCTTTACTGAACC
4641 CACCACATGCGGGCCATAAAATGAGTGAAATCACAGTGCACCCTGTTCTCTTATTTTTGAAGTGTTTCACGATTTCCAGC
4721 ATGTCCATCAGATGGGGGGATTGCTAACTTCTCTCTTACTCATGTACTTACATTCTGTAGTTCTCATTGCATCACTTTGG
4801 ATGTTTACTTTGAAAAGCAGAAACTGTCTCTTTAAACTTGGCCCTCAATGTCATTTGCGTATCTCTGAGAACAATAGCTA
4881 TGTCCCACCCCAGTTTGTATTTCCGTTGGTTGTTGGCACTTTTTTCTCATTCCCCCATCTCATTACCTTGTCTGTTTTCT
4961 GGCACTCACTATAATCAGCCTTGCACTAGAGCTGTTTGTGGACTTGGCTTCACCCCCTCCTCCTCAGCCCTCCCCCACCC
5041 ATTAAATTGTGAGCTCTTAGAAGACAGGGGTGGCCTTTCATGTCTGATCCCCTACCAAATCTAGCACAGTGCCTTGCATC
5121 AAGTAGATTTCAATAAATATATGTTAAATGGCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuUAAUCCAUCACCGUCACCUu 5'
            :|| || || ||||||||| 
Target 5' agGTTTGG-AG-GGCAGTGGAa 3'
2589 - 2608 162.00 -21.40
2
miRNA  3' uuuaauccaUCACCGUCACCUu 5'
                   ||  |||||||: 
Target 5' gaccccgccAGCAGCAGTGGGg 3'
2139 - 2160 133.00 -13.20
3
miRNA  3' uuuAAUCCA---UCACCGUCACCUu 5'
             | || |   | |  ||||||: 
Target 5' gtcTGAGCTACCATTTCCAGTGGGc 3'
2657 - 2681 127.00 -9.10
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs781891177 15 dbSNP
rs782050572 19 dbSNP
rs1289971580 23 dbSNP
rs1453598265 24 dbSNP
rs376449618 29 dbSNP
rs781825600 30 dbSNP
rs782518422 39 dbSNP
rs1425341266 41 dbSNP
rs782635429 42 dbSNP
rs1181968774 44 dbSNP
rs1421909585 51 dbSNP
rs781894039 59 dbSNP
rs1039372982 60 dbSNP
rs782542192 63 dbSNP
rs782570695 72 dbSNP
rs782189447 73 dbSNP
rs1224134100 74 dbSNP
rs782365607 82 dbSNP
rs368558325 83 dbSNP
rs782626018 84 dbSNP
rs1309643418 89 dbSNP
rs372578911 90 dbSNP
rs782034883 91 dbSNP
rs782148285 93 dbSNP
rs782328688 94 dbSNP
rs781963435 96 dbSNP
rs782081441 99 dbSNP
rs782250806 100 dbSNP
rs781858126 102 dbSNP
rs782155372 103 dbSNP
rs782778619 118 dbSNP
rs376640954 119 dbSNP
rs781967936 121 dbSNP
rs1374607341 123 dbSNP
rs782631228 124 dbSNP
rs781827128 127 dbSNP
rs1427671314 128 dbSNP
rs782529078 129 dbSNP
rs782640712 136 dbSNP
rs782047830 137 dbSNP
rs1490371641 146 dbSNP
rs368716521 147 dbSNP
rs868943077 148 dbSNP
rs1207719754 150 dbSNP
rs1035104227 160 dbSNP
rs782334444 162 dbSNP
rs782000537 167 dbSNP
rs1316436325 172 dbSNP
rs782116543 175 dbSNP
rs782413122 178 dbSNP
rs1224593688 187 dbSNP
rs1321617710 196 dbSNP
rs782010019 207 dbSNP
rs3788754 208 dbSNP
rs782058402 213 dbSNP
rs918460761 217 dbSNP
rs782332156 221 dbSNP
rs1421119562 222 dbSNP
rs781973123 223 dbSNP
rs782085263 229 dbSNP
rs1178515615 233 dbSNP
rs782333939 234 dbSNP
rs781861700 237 dbSNP
rs782555517 240 dbSNP
rs1376601550 244 dbSNP
rs912342840 266 dbSNP
rs1439018386 270 dbSNP
rs1250871635 284 dbSNP
rs942407602 285 dbSNP
rs1456724030 304 dbSNP
rs1039448401 309 dbSNP
rs1204888482 318 dbSNP
rs1323402101 319 dbSNP
rs1273553831 334 dbSNP
rs1241337074 336 dbSNP
rs1336420980 337 dbSNP
rs782025912 343 dbSNP
rs1444762851 354 dbSNP
rs1338405723 362 dbSNP
rs371557125 365 dbSNP
rs1401464721 373 dbSNP
rs947006430 377 dbSNP
rs781926725 381 dbSNP
rs1470917832 393 dbSNP
rs782785370 419 dbSNP
rs1363805251 427 dbSNP
rs1177644761 430 dbSNP
rs1437385324 434 dbSNP
rs782047779 441 dbSNP
rs1204759269 454 dbSNP
rs1442186879 460 dbSNP
rs1277199899 470 dbSNP
rs1207340516 471 dbSNP
rs1557508 472 dbSNP
rs782083032 489 dbSNP
rs1260168048 490 dbSNP
rs1238282056 504 dbSNP
rs999680257 509 dbSNP
rs1315965441 510 dbSNP
rs1453173679 516 dbSNP
rs1339652441 520 dbSNP
rs782739837 520 dbSNP
rs370007881 524 dbSNP
rs1402319422 525 dbSNP
rs1035134871 526 dbSNP
rs1417287065 538 dbSNP
rs781847437 541 dbSNP
rs1183809800 543 dbSNP
rs1472675894 544 dbSNP
rs1236028492 554 dbSNP
rs1195980631 555 dbSNP
rs1448041830 558 dbSNP
rs896637869 563 dbSNP
rs1214601857 564 dbSNP
rs1012300150 565 dbSNP
rs1292860521 568 dbSNP
rs1024107063 569 dbSNP
rs1355398264 590 dbSNP
rs962745851 591 dbSNP
rs4828611 596 dbSNP
rs1432845075 600 dbSNP
rs1326996932 605 dbSNP
rs1297482215 606 dbSNP
rs1397661646 629 dbSNP
rs1025594615 634 dbSNP
rs1366818980 646 dbSNP
rs1163843293 657 dbSNP
rs1404341931 659 dbSNP
rs782532679 677 dbSNP
rs1412118188 680 dbSNP
rs1475931330 686 dbSNP
rs1263169308 687 dbSNP
rs1192118515 690 dbSNP
rs951361149 691 dbSNP
rs1269628447 698 dbSNP
rs986654988 706 dbSNP
rs912417693 707 dbSNP
rs1275342837 720 dbSNP
rs782681400 720 dbSNP
rs1318322149 721 dbSNP
rs1277566187 733 dbSNP
rs1216659407 738 dbSNP
rs1346871797 741 dbSNP
rs1303189114 767 dbSNP
rs1435088411 772 dbSNP
rs1347804023 776 dbSNP
rs1330455613 783 dbSNP
rs375208073 790 dbSNP
rs781858030 810 dbSNP
rs1169183664 825 dbSNP
rs963841941 834 dbSNP
rs1430115018 842 dbSNP
rs782603405 843 dbSNP
rs1477069316 846 dbSNP
rs1234874013 864 dbSNP
rs975166102 879 dbSNP
rs1205483680 880 dbSNP
rs1458055283 883 dbSNP
rs1257136130 886 dbSNP
rs1196705213 890 dbSNP
rs369418308 891 dbSNP
rs1218187594 896 dbSNP
rs1364866540 928 dbSNP
rs1280928934 940 dbSNP
rs868993873 945 dbSNP
rs782130491 947 dbSNP
rs1400059428 962 dbSNP
rs1329684493 964 dbSNP
rs1471145354 981 dbSNP
rs947110557 984 dbSNP
rs1175961571 988 dbSNP
rs1412907068 989 dbSNP
rs782775625 996 dbSNP
rs1410171315 1011 dbSNP
rs1178018251 1018 dbSNP
rs1041765925 1026 dbSNP
rs183833511 1033 dbSNP
rs1462476796 1035 dbSNP
rs1209253283 1036 dbSNP
rs782220333 1036 dbSNP
rs1285691195 1055 dbSNP
rs1240464605 1065 dbSNP
rs935605249 1067 dbSNP
rs1375746479 1079 dbSNP
rs1306601595 1082 dbSNP
rs1454973583 1090 dbSNP
rs1380349011 1091 dbSNP
rs1056614585 1099 dbSNP
rs896667632 1104 dbSNP
rs1012331106 1108 dbSNP
rs1045191839 1138 dbSNP
rs548598746 1139 dbSNP
rs995549735 1159 dbSNP
rs1026046573 1160 dbSNP
rs1419142919 1168 dbSNP
rs1378762843 1173 dbSNP
rs1165697894 1177 dbSNP
rs201800463 1178 dbSNP
rs951336775 1185 dbSNP
rs1256521128 1189 dbSNP
rs1181234847 1201 dbSNP
rs1482213290 1202 dbSNP
rs1008159855 1203 dbSNP
rs1216765819 1211 dbSNP
rs1352319557 1220 dbSNP
rs782301163 1227 dbSNP
rs1247636110 1231 dbSNP
rs1322713780 1236 dbSNP
rs1312402668 1242 dbSNP
rs1394617368 1260 dbSNP
rs1364755405 1261 dbSNP
rs963873889 1268 dbSNP
rs975239601 1270 dbSNP
rs1358629919 1274 dbSNP
rs1305201398 1279 dbSNP
rs914359234 1294 dbSNP
rs1163861722 1299 dbSNP
rs782707785 1310 dbSNP
rs1421811788 1317 dbSNP
rs782581625 1323 dbSNP
rs977176815 1336 dbSNP
rs1487680459 1340 dbSNP
rs1260336619 1349 dbSNP
rs781794857 1361 dbSNP
rs938317302 1366 dbSNP
rs1264468330 1385 dbSNP
rs1243139181 1386 dbSNP
rs1309627709 1399 dbSNP
rs1218499901 1404 dbSNP
rs1279390797 1404 dbSNP
rs1338546134 1405 dbSNP
rs189667426 1407 dbSNP
rs918167086 1408 dbSNP
rs948257334 1411 dbSNP
rs1291988257 1416 dbSNP
rs1045628852 1430 dbSNP
rs1477428145 1441 dbSNP
rs782428495 1455 dbSNP
rs1201015265 1456 dbSNP
rs1433246794 1468 dbSNP
rs1266310984 1472 dbSNP
rs1207631563 1473 dbSNP
rs996014486 1479 dbSNP
rs781995459 1480 dbSNP
rs1047111397 1482 dbSNP
rs1316641553 1503 dbSNP
rs1285727923 1511 dbSNP
rs782422942 1519 dbSNP
rs1330594116 1523 dbSNP
rs1299476723 1525 dbSNP
rs1393306557 1530 dbSNP
rs144180418 1543 dbSNP
rs1331833635 1546 dbSNP
rs1008192204 1547 dbSNP
rs1398093644 1553 dbSNP
rs782673263 1554 dbSNP
rs899740843 1582 dbSNP
rs1466107747 1589 dbSNP
rs1376516538 1621 dbSNP
rs996717942 1627 dbSNP
rs1021898396 1628 dbSNP
rs181353320 1630 dbSNP
rs1178466307 1633 dbSNP
rs781972683 1640 dbSNP
rs186844271 1664 dbSNP
rs1031344675 1669 dbSNP
rs1344421368 1670 dbSNP
rs959739011 1671 dbSNP
rs782455150 1696 dbSNP
rs1241489015 1700 dbSNP
rs1377985913 1703 dbSNP
rs992445977 1706 dbSNP
rs1445853643 1710 dbSNP
rs918198152 1719 dbSNP
rs1374292866 1721 dbSNP
rs948287964 1723 dbSNP
rs375769875 1740 dbSNP
rs981022698 1743 dbSNP
rs1170338264 1761 dbSNP
rs782792499 1770 dbSNP
rs931464232 1776 dbSNP
rs1380593096 1784 dbSNP
rs1157670456 1785 dbSNP
rs782033249 1794 dbSNP
rs191734703 1800 dbSNP
rs782780005 1801 dbSNP
rs181816143 1817 dbSNP
rs1254654047 1818 dbSNP
rs899812729 1857 dbSNP
rs1354493381 1859 dbSNP
rs1285580710 1889 dbSNP
rs1238171201 1897 dbSNP
rs782491703 1898 dbSNP
rs144519696 1913 dbSNP
rs1285691172 1914 dbSNP
rs1245206004 1941 dbSNP
rs1339856448 1949 dbSNP
rs1332102533 1955 dbSNP
rs1401380882 1964 dbSNP
rs717303 1970 dbSNP
rs1360533384 1975 dbSNP
rs1021509868 1992 dbSNP
rs1417433350 1993 dbSNP
rs904359189 2001 dbSNP
rs1164243329 2008 dbSNP
rs781799037 2015 dbSNP
rs148426956 2019 dbSNP
rs782688521 2020 dbSNP
rs992477119 2024 dbSNP
rs1022604605 2026 dbSNP
rs572620335 2027 dbSNP
rs782256066 2029 dbSNP
rs1214761221 2033 dbSNP
rs1453578152 2033 dbSNP
rs1290829722 2036 dbSNP
rs1228732115 2040 dbSNP
rs531587901 2047 dbSNP
rs1282360794 2058 dbSNP
rs782184576 2061 dbSNP
rs1340624631 2066 dbSNP
rs1276978210 2076 dbSNP
rs782299349 2078 dbSNP
rs569929141 2079 dbSNP
rs1323800841 2099 dbSNP
rs1405141081 2120 dbSNP
rs1388948492 2121 dbSNP
rs931510730 2139 dbSNP
rs1478411940 2143 dbSNP
rs782602541 2145 dbSNP
rs1191656618 2146 dbSNP
rs1247580465 2150 dbSNP
rs1221022851 2151 dbSNP
rs782031644 2161 dbSNP
rs1270989811 2162 dbSNP
rs782276997 2175 dbSNP
rs1318573411 2217 dbSNP
rs908653784 2225 dbSNP
rs944124605 2242 dbSNP
rs1369010264 2249 dbSNP
rs1275083014 2253 dbSNP
rs375822855 2257 dbSNP
rs782313012 2258 dbSNP
rs899843622 2265 dbSNP
rs781937562 2272 dbSNP
rs1400284745 2281 dbSNP
rs1169162210 2322 dbSNP
rs782286535 2348 dbSNP
rs1425890981 2349 dbSNP
rs1043406830 2368 dbSNP
rs1477142185 2393 dbSNP
rs904432551 2407 dbSNP
rs1180331937 2424 dbSNP
rs1458038932 2427 dbSNP
rs1237495373 2441 dbSNP
rs1202282862 2455 dbSNP
rs781985486 2459 dbSNP
rs1278663999 2464 dbSNP
rs1218097616 2478 dbSNP
rs1345355492 2479 dbSNP
rs782371912 2494 dbSNP
rs895628723 2499 dbSNP
rs1013971691 2500 dbSNP
rs1329926997 2507 dbSNP
rs781997811 2510 dbSNP
rs1359851420 2511 dbSNP
rs1022634203 2512 dbSNP
rs1412814760 2515 dbSNP
rs970129757 2523 dbSNP
rs782098830 2537 dbSNP
rs1159403963 2540 dbSNP
rs1440088067 2559 dbSNP
rs994508845 2565 dbSNP
rs1237286996 2569 dbSNP
rs1175441153 2590 dbSNP
rs782723162 2603 dbSNP
rs1237960707 2606 dbSNP
rs142622936 2630 dbSNP
rs1484401622 2649 dbSNP
rs36021644 2655 dbSNP
rs782739356 2664 dbSNP
rs908726711 2670 dbSNP
rs1353469505 2677 dbSNP
rs1230359639 2696 dbSNP
rs1380593966 2711 dbSNP
rs537425851 2713 dbSNP
rs781941918 2714 dbSNP
rs1362471197 2716 dbSNP
rs1299051232 2724 dbSNP
rs1419283592 2737 dbSNP
rs1378664380 2755 dbSNP
rs1156726724 2764 dbSNP
rs782058221 2767 dbSNP
rs1414530014 2770 dbSNP
rs1181145192 2773 dbSNP
rs782803692 2781 dbSNP
rs1216928628 2793 dbSNP
rs1487782690 2798 dbSNP
rs932679115 2807 dbSNP
rs370733795 2810 dbSNP
rs782050140 2813 dbSNP
rs1224320852 2816 dbSNP
rs1322697643 2817 dbSNP
rs1231940297 2831 dbSNP
rs1342483597 2835 dbSNP
rs1278959515 2841 dbSNP
rs782510786 2850 dbSNP
rs56076412 2851 dbSNP
rs782027998 2859 dbSNP
rs1350193672 2862 dbSNP
rs1164023610 2866 dbSNP
rs1474163047 2868 dbSNP
rs781830920 2881 dbSNP
rs925886367 2889 dbSNP
rs1477203769 2890 dbSNP
rs1259316227 2896 dbSNP
rs1192505598 2932 dbSNP
rs782490154 2933 dbSNP
rs1265182944 2961 dbSNP
rs1212174492 2962 dbSNP
rs1052938200 2967 dbSNP
rs895661286 2971 dbSNP
rs1259248439 2976 dbSNP
rs1218165603 3012 dbSNP
rs1324692435 3029 dbSNP
rs1303696819 3030 dbSNP
rs7050212 3031 dbSNP
rs1044162831 3032 dbSNP
rs782196668 3039 dbSNP
rs782526453 3059 dbSNP
rs1402449413 3068 dbSNP
rs1171298940 3070 dbSNP
rs1461051572 3072 dbSNP
rs1370789331 3082 dbSNP
rs1177825989 3087 dbSNP
rs1433448689 3104 dbSNP
rs1266200286 3111 dbSNP
rs1192214699 3119 dbSNP
rs55805469 3148 dbSNP
rs1459364589 3151 dbSNP
rs782639363 3156 dbSNP
rs1027301371 3166 dbSNP
rs782255418 3167 dbSNP
rs1257794333 3175 dbSNP
rs1004479348 3177 dbSNP
rs1234021953 3178 dbSNP
rs782771697 3189 dbSNP
rs72616429 3200 dbSNP
rs782611792 3203 dbSNP
rs1301513172 3206 dbSNP
rs561798605 3223 dbSNP
rs1438531768 3230 dbSNP
rs114305195 3260 dbSNP
rs1390706700 3261 dbSNP
rs921378875 3274 dbSNP
rs1173868297 3276 dbSNP
rs954137229 3293 dbSNP
rs782321079 3295 dbSNP
rs1394169767 3296 dbSNP
rs1171286039 3313 dbSNP
rs782554222 3320 dbSNP
rs1381255984 3321 dbSNP
rs1181757592 3325 dbSNP
rs1436621192 3348 dbSNP
rs925988746 3356 dbSNP
rs1201168245 3393 dbSNP
rs1482965858 3396 dbSNP
rs1278466582 3406 dbSNP
rs782010456 3408 dbSNP
rs934628442 3409 dbSNP
rs1309759795 3410 dbSNP
rs1238031024 3428 dbSNP
rs1052968333 3433 dbSNP
rs1333964562 3435 dbSNP
rs1336084451 3438 dbSNP
rs1396110089 3444 dbSNP
rs782165259 3445 dbSNP
rs949919294 3452 dbSNP
rs1421098729 3454 dbSNP
rs1360732768 3455 dbSNP
rs1044222778 3466 dbSNP
rs1468912730 3468 dbSNP
rs6627785 3471 dbSNP
rs1188776921 3472 dbSNP
rs782008676 3473 dbSNP
rs1474931019 3476 dbSNP
rs1255434434 3481 dbSNP
rs375979473 3487 dbSNP
rs782746219 3488 dbSNP
rs1204400657 3490 dbSNP
rs186450847 3492 dbSNP
rs886111884 3504 dbSNP
rs189670385 3505 dbSNP
rs8781 3511 dbSNP
rs1290947904 3514 dbSNP
rs781849170 3521 dbSNP
rs1401285724 3528 dbSNP
rs901413409 3532 dbSNP
rs35548981 3534 dbSNP
rs1360837138 3561 dbSNP
rs1317193439 3600 dbSNP
rs1399329855 3601 dbSNP
rs1393258522 3623 dbSNP
rs1164370423 3629 dbSNP
rs1461411953 3632 dbSNP
rs1416295398 3645 dbSNP
rs998379710 3646 dbSNP
rs1028510124 3664 dbSNP
rs782527302 3665 dbSNP
rs782592071 3666 dbSNP
rs782359440 3681 dbSNP
rs1191229025 3692 dbSNP
rs978875772 3697 dbSNP
rs1445088286 3699 dbSNP
rs781838371 3719 dbSNP
rs1214057623 3721 dbSNP
rs182066732 3721 dbSNP
rs3256 3722 dbSNP
rs1220012453 3725 dbSNP
rs782274656 3728 dbSNP
rs375648745 3737 dbSNP
rs782648976 3740 dbSNP
rs1428161265 3741 dbSNP
rs1324672559 3742 dbSNP
rs186650584 3744 dbSNP
rs1392997536 3745 dbSNP
rs782307480 3751 dbSNP
rs3257 3753 dbSNP
rs1418831177 3798 dbSNP
rs1166403228 3807 dbSNP
rs1479152139 3807 dbSNP
rs1194092751 3813 dbSNP
rs1247488661 3813 dbSNP
rs1251071096 3813 dbSNP
rs1467866016 3813 dbSNP
rs1200399120 3814 dbSNP
rs554575135 3815 dbSNP
rs886184347 3820 dbSNP
rs1212269953 3822 dbSNP
rs1346750658 3832 dbSNP
rs940367276 3836 dbSNP
rs1440632386 3847 dbSNP
rs1369159396 3851 dbSNP
rs1333976385 3911 dbSNP
rs1448115561 3919 dbSNP
rs782059830 3926 dbSNP
rs1326988232 3943 dbSNP
rs1040044225 3947 dbSNP
rs1426222723 3949 dbSNP
rs1173178776 3973 dbSNP
rs1453593007 3978 dbSNP
rs1392988436 3995 dbSNP
rs1180469774 3997 dbSNP
rs1480944306 4002 dbSNP
rs901487023 4006 dbSNP
rs998453171 4013 dbSNP
rs1443573058 4014 dbSNP
rs1280613379 4032 dbSNP
rs1233045455 4043 dbSNP
rs191310393 4064 dbSNP
rs1311969414 4066 dbSNP
rs1224663008 4068 dbSNP
rs782025723 4075 dbSNP
rs1000769373 4076 dbSNP
rs782393388 4082 dbSNP
rs1359757998 4087 dbSNP
rs1033131903 4094 dbSNP
rs1433054961 4106 dbSNP
rs1362645418 4114 dbSNP
rs782114081 4115 dbSNP
rs781989737 4136 dbSNP
rs1175402692 4137 dbSNP
rs1473522879 4150 dbSNP
rs988794151 4165 dbSNP
rs1257567862 4167 dbSNP
rs782108318 4170 dbSNP
rs971341076 4183 dbSNP
rs782738916 4191 dbSNP
rs1316691512 4194 dbSNP
rs927201748 4195 dbSNP
rs930529589 4225 dbSNP
rs782765971 4233 dbSNP
rs1292777099 4235 dbSNP
rs781813365 4236 dbSNP
rs1342620285 4237 dbSNP
rs143775675 4246 dbSNP
rs370255116 4251 dbSNP
rs1454175160 4268 dbSNP
rs1344365187 4274 dbSNP
rs1040119095 4278 dbSNP
rs1407045871 4286 dbSNP
rs1418425455 4295 dbSNP
rs1186621088 4303 dbSNP
rs1473901172 4310 dbSNP
rs1264965074 4317 dbSNP
rs1186728348 4318 dbSNP
rs922941123 4331 dbSNP
rs1224182223 4337 dbSNP
rs1336133788 4338 dbSNP
rs931600615 4339 dbSNP
rs782154275 4342 dbSNP
rs148130961 4343 dbSNP
rs781805943 4344 dbSNP
rs1381834661 4367 dbSNP
rs1360087685 4378 dbSNP
rs890026942 4390 dbSNP
rs183067536 4400 dbSNP
rs1442757888 4401 dbSNP
rs188592558 4410 dbSNP
rs891938969 4414 dbSNP
rs1010288165 4415 dbSNP
rs1425120060 4417 dbSNP
rs1170755148 4420 dbSNP
rs1427585576 4422 dbSNP
rs1259167184 4424 dbSNP
rs1193295733 4438 dbSNP
rs1469189749 4451 dbSNP
rs1252992879 4452 dbSNP
rs1024308507 4460 dbSNP
rs781865187 4470 dbSNP
rs1212345957 4472 dbSNP
rs1459177951 4486 dbSNP
rs781862359 4494 dbSNP
rs374287461 4497 dbSNP
rs1305998528 4508 dbSNP
rs1034301711 4509 dbSNP
rs1236304501 4528 dbSNP
rs1371443550 4538 dbSNP
rs952038174 4539 dbSNP
rs192957315 4540 dbSNP
rs907724228 4542 dbSNP
rs1298269721 4543 dbSNP
rs200460349 4573 dbSNP
rs1460988647 4585 dbSNP
rs782509206 4604 dbSNP
rs975831784 4618 dbSNP
rs1175117681 4619 dbSNP
rs1455018259 4642 dbSNP
rs1394829613 4647 dbSNP
rs1192101570 4649 dbSNP
rs782595812 4651 dbSNP
rs1251800781 4652 dbSNP
rs923011679 4654 dbSNP
rs782614819 4676 dbSNP
rs781821427 4683 dbSNP
rs782227247 4698 dbSNP
rs1479696091 4701 dbSNP
rs1258045219 4712 dbSNP
rs782455597 4713 dbSNP
rs1348371836 4723 dbSNP
rs1302449199 4734 dbSNP
rs1231737893 4736 dbSNP
rs782438881 4740 dbSNP
rs375042950 4760 dbSNP
rs1390379804 4763 dbSNP
rs936266222 4772 dbSNP
rs1393669505 4790 dbSNP
rs1314377255 4807 dbSNP
rs1434985110 4812 dbSNP
rs1374426673 4822 dbSNP
rs1172180727 4826 dbSNP
rs1471324447 4828 dbSNP
rs1364948847 4829 dbSNP
rs782571423 4830 dbSNP
rs1181704316 4845 dbSNP
rs782287305 4849 dbSNP
rs782292065 4857 dbSNP
rs782428243 4859 dbSNP
rs781999773 4860 dbSNP
rs1278387001 4861 dbSNP
rs1208466029 4870 dbSNP
rs907270537 4873 dbSNP
rs782211003 4875 dbSNP
rs1001568772 4877 dbSNP
rs1034783128 4879 dbSNP
rs1352562387 4891 dbSNP
rs1261296182 4894 dbSNP
rs1238205686 4905 dbSNP
rs952051389 4906 dbSNP
rs1294622672 4920 dbSNP
rs782350823 4932 dbSNP
rs1354434158 4944 dbSNP
rs1006152204 4958 dbSNP
rs1310695398 4962 dbSNP
rs1402865983 4970 dbSNP
rs1014811494 4974 dbSNP
rs961910469 4977 dbSNP
rs1158535601 4984 dbSNP
rs1452296000 4986 dbSNP
rs975905350 4990 dbSNP
rs1420584578 4995 dbSNP
rs923044482 5002 dbSNP
rs1255752114 5005 dbSNP
rs1195571066 5009 dbSNP
rs1448565767 5016 dbSNP
rs1262210577 5017 dbSNP
rs1204280220 5028 dbSNP
rs1348474772 5032 dbSNP
rs1274900922 5033 dbSNP
rs1233438665 5036 dbSNP
rs1333509049 5039 dbSNP
rs56181618 5041 dbSNP
rs1432420808 5043 dbSNP
rs985872623 5060 dbSNP
rs1318099260 5066 dbSNP
rs924952225 5068 dbSNP
rs936314503 5070 dbSNP
rs1397325556 5071 dbSNP
rs1166276412 5075 dbSNP
rs1461035782 5121 dbSNP
rs782065566 5127 dbSNP
rs1169687346 5130 dbSNP
rs1475879142 5138 dbSNP
rs1372663578 5140 dbSNP
rs990362256 5142 dbSNP
rs782784629 5144 dbSNP
rs913479648 5151 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuuaauccaucaccgucACCUu 5'
                           |||| 
Target 5' ---------caaagguuUGGAg 3'
1 - 13
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000370251.3 | 3UTR | CAAAGGUUUGGAGGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
82 hsa-miR-6509-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055374 PDCD4 programmed cell death 4 2 4
MIRT378341 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT444668 CDKL2 cyclin dependent kinase like 2 2 2
MIRT446953 CD248 CD248 molecule 2 2
MIRT460332 CAMK4 calcium/calmodulin dependent protein kinase IV 2 6
MIRT464078 VPS4A vacuolar protein sorting 4 homolog A 2 2
MIRT464586 UBN2 ubinuclein 2 2 2
MIRT468482 SESN3 sestrin 3 2 2
MIRT468962 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT475455 HSPA8 heat shock protein family A (Hsp70) member 8 2 2
MIRT482403 ADRB1 adrenoceptor beta 1 2 10
MIRT486992 ZFAND2B zinc finger AN1-type containing 2B 2 2
MIRT489397 TUBB2A tubulin beta 2A class IIa 2 2
MIRT526319 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526560 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT526732 ZNF138 zinc finger protein 138 2 8
MIRT531581 STXBP5L syntaxin binding protein 5 like 2 2
MIRT532011 NOX5 NADPH oxidase 5 2 2
MIRT533407 TXLNG taxilin gamma 2 2
MIRT533436 TRPC5 transient receptor potential cation channel subfamily C member 5 2 2
MIRT533866 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT539254 ANKRD50 ankyrin repeat domain 50 2 2
MIRT541451 C15orf48 chromosome 15 open reading frame 48 2 2
MIRT566794 MIER3 MIER family member 3 2 2
MIRT569294 SURF6 surfeit 6 2 2
MIRT571336 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT572802 PPP3CB protein phosphatase 3 catalytic subunit beta 2 2
MIRT572813 MYO1C myosin IC 2 2
MIRT574219 DMRT2 doublesex and mab-3 related transcription factor 2 2 2
MIRT607259 GRAMD1B GRAM domain containing 1B 2 4
MIRT609307 CHD4 chromodomain helicase DNA binding protein 4 2 2
MIRT615459 REPS1 RALBP1 associated Eps domain containing 1 2 2
MIRT616861 RPLP1 ribosomal protein lateral stalk subunit P1 2 2
MIRT619415 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT619652 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT625325 TNFRSF13B TNF receptor superfamily member 13B 2 2
MIRT638980 ARFIP2 ADP ribosylation factor interacting protein 2 2 2
MIRT639458 ZNF429 zinc finger protein 429 2 2
MIRT640550 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT641473 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
MIRT642720 ATXN3 ataxin 3 2 2
MIRT643048 SMN1 survival of motor neuron 1, telomeric 2 2
MIRT644921 SMN2 survival of motor neuron 2, centromeric 2 2
MIRT645875 ZNF275 zinc finger protein 275 2 2
MIRT649824 LIPG lipase G, endothelial type 2 2
MIRT649851 GYS2 glycogen synthase 2 2 2
MIRT649972 TRAFD1 TRAF-type zinc finger domain containing 1 2 2
MIRT650675 ZNF259 ZPR1 zinc finger 1 1
MIRT651319 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT652876 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 2
MIRT652881 SYVN1 synoviolin 1 2 2
MIRT654144 RPAP2 RNA polymerase II associated protein 2 2 2
MIRT657080 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT657181 INO80C INO80 complex subunit C 2 2
MIRT657830 GJD3 gap junction protein delta 3 2 2
MIRT657897 GDF7 growth differentiation factor 7 2 2
MIRT659631 CDKN2AIP CDKN2A interacting protein 2 2
MIRT663115 SPTA1 spectrin alpha, erythrocytic 1 2 2
MIRT664739 METTL16 methyltransferase like 16 2 2
MIRT667551 LRAT lecithin retinol acyltransferase 2 2
MIRT668552 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT682893 XIAP X-linked inhibitor of apoptosis 2 2
MIRT683092 PRRG4 proline rich and Gla domain 4 2 2
MIRT683102 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT697648 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT709158 ZNF419 zinc finger protein 419 2 2
MIRT713220 RCAN2 regulator of calcineurin 2 2 2
MIRT713277 LAIR1 leukocyte associated immunoglobulin like receptor 1 2 2
MIRT715008 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 2
MIRT715051 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT715696 PNMAL2 paraneoplastic Ma antigen family member 8B 2 2
MIRT717250 TMEM246 transmembrane protein 246 2 2
MIRT717322 PGK1 phosphoglycerate kinase 1 2 2
MIRT717587 MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like 2 2
MIRT718122 CHST4 carbohydrate sulfotransferase 4 2 2
MIRT718418 CALN1 calneuron 1 2 2
MIRT718750 ZNF490 zinc finger protein 490 2 2
MIRT720048 PPP1R3F protein phosphatase 1 regulatory subunit 3F 2 2
MIRT721497 THRB thyroid hormone receptor beta 2 2
MIRT722531 EPRS glutamyl-prolyl-tRNA synthetase 2 2
MIRT723279 KRTAP21-2 keratin associated protein 21-2 2 2
MIRT724813 MSX2 msh homeobox 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6509-3p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-6509-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6509-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6509-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6509-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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