pre-miRNA Information
pre-miRNA hsa-mir-4446   
Genomic Coordinates chr3: 113594876 - 113594942
Description Homo sapiens miR-4446 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4446-5p
Sequence 8| AUUUCCCUGCCAUUCCCUUGGC |29
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1356015605 6 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol VANGL2   
Synonyms LPP1, LTAP, STB1, STBM, STBM1
Description VANGL planar cell polarity protein 2
Transcript NM_020335   
Expression
Putative miRNA Targets on VANGL2
3'UTR of VANGL2
(miRNA target sites are highlighted)
>VANGL2|NM_020335|3'UTR
   1 CTGTGCAACAGCAGGGGGAGTGGGAAACTCTGGGGGGTCCTGAGGGGGTGGGAGGGGGCTTGGTTCTCAGGCCCAGCCAC
  81 ATTCCTGCCACCCTTCTTCTTCTTGCTCTTTTTTTTTTACTTGAATTAACGCACCCCCACCTTCTCTCCTCGCTTCTTCC
 161 TTATTTTACCCCATGTGAACCTGGAGAGACCATCCTGCTGTCAACAGTACCTGGGAAGGACTCCCACCTCACCAACAACT
 241 TTTGTATTACTCTAGGCCCTGCAGGAATCAGTGCCTCTCTCCCTCTTCTTTCCCTAGTCTTTTCCCAGATTACAGTCTCT
 321 CCTGAAAGGGCACAGGGCCCTGCTGATTGTACTTTCCCCTCCTGAGCCCCGACTCACAAATCCAAGTTCTTAAAACATTT
 401 CTCTTCAGTGGCCCAACAGGGTTTCTCTGGGGCACATGGACATGACTCCAGAGAGCCACAGTGCCAAACTCCTCCAGGGC
 481 AGCAACTGGCCCTCCTGTCCCTCACCCCAGCCACAACAAACCCTGGGTTCTAGGGCAGGGATACTCCTGCCACACAGCCC
 561 GAGTTAGAAATCTCCTTGCTAGGAGCATTTGCTTCCACATATATTTAGAGCAAAGAAGGATCCCATCCTTTTCCCAGAAA
 641 TCTCCACCTAATGTTTTTGGTTTGTATGGTCACGTGACCATAGGCAACCACGTGGAAACCCTCTGTGACCACTTTTCCAG
 721 GGACTTAGGGGAAGGTACCTTTCTTCCAATGTGTCTTCCTAGGCAGCCCCTGAGGAGGAGGGCTGAATAGATCCCTGAGG
 801 TTTTGGAGAGACCCCCATCACTGACTCCTGCTCCCTAACCCTACCCTCACTTTCGTCCCCGCTCTTCCCAGTGAAGGATG
 881 GTATGTAGACTCCTGTACAGACATAGTGGCTTGCAGACCCTGACCCAGCCCCTGTGGTCTTAGACAAATGTTTTTATTTT
 961 TGTCACCAGCCACCCCTGTCCTGCCGCCTTCTCTCGACTCCAGAGACCTGTTGCCTCATCTCTTTTGGGGAAGAGCCGGC
1041 AGCTCCTCCTCATCCCCTGCCTTAAGTCCAGTTCTTTGCCTCAGGGGTCTCGTTTCCTTGGCCTTCCAGGGTCCCCACCC
1121 CTTTTCTCCCTGCCTGATTCTCTGAGCTCTGGGCTCCGTCTGTATTGGGTTGAGGGGCAAGGATTACTGCCTTTTGTAGG
1201 TACTTCACCCCTCACCCCATTTTAGCTTCCATAGTCTTTGCACCAAATCCAAATTCTTGATAATTTAGATCTCATTTTGA
1281 GCAAAATTTGCTGGCCCTCTAATAAATATTTTCAATATAAATCTGAGCCTTTGACTCAGACATTTTTGCCAAGGAGAGTA
1361 GAATTAGGAAGTACCCATATACATCCAGCCAGGATCCACATGGAGGACCTTTCTGATGGCTGCAATGACTAGGCCATTCC
1441 TCTGAGTAACTCACAGTGTCCTTTTGTAGGCCCTTCTTTTCCCTGAAAGACTGGTTGGTACTTACCTTGCAGAGCACATC
1521 CTGGGATAAGATCCCCAGTGTCTCCCCTGGGAGGCTCCCCCTCTGTGTAGCACCAGCCCTGGGAATGATGGAGCCTAGTG
1601 ATCGGGGTTTCTCCTGCTGTCCTTTCTGCAAAAGTTCACTTGTTTACCCACCGCATGCTAGAGAGGAGCTCATTGGCCAA
1681 TGCTTACCTTGTCCCCAAAGGGGTGGGTTGTGGAGCTCACTTAGGCAGGGCCTCTGGCTGGGGCCAGGGTTATGAGATAG
1761 GCCTGTATGAAATATGTCCTGTTCTGGGGGTCTGTCTCTTTTCTTCTCTTCAAAAACTTTGTGTCAGAGAGTCCCTTCTG
1841 AGTCACATAAATACCTCACTATCCTGGAAAACAGGGCCTGGATGGTGACTGGGGTCATTGCCTTTGTGGACAGGATGGAG
1921 TGTGGTGTGGTCTGAGGAGCAGGTTGGGGTGGGGGAGAGGGAAAGGATTTGGGATCTTAGTTGCTGCCCTAGGTTAGGGG
2001 CTGGGGAGTGTTTATTTTAAGATCCTGCCATGTTTTTAATCACTGTGATTTTTTTTTCATTCCCCTTTCCTAAAAAAAAT
2081 TTTTTGCCTCCAACTCTCTAAGCACTAAGGGCTGTGCCTGAGAATGGTAGCATTTTGGTCTTTTGCTTCAGAACTGTGGT
2161 ATCTTTGTCTTTTTTCATTATTATTATTATTATTATTATTATTATTACTATTGTTTTTTAAAATGTCAGGATGAATTGTC
2241 AGACATATGGCCATGTGTTTGTCCTCTGCTTCTCCCCTGTGGGAAGTTGTCTCCATGCTGTGAACTGCTGTGGGGTGTGC
2321 AGCTGACTCAGTCCCTCTGAGCAGTTTCCCCACTGTGTCTGTCCCATCATGCGCTGGATCTGCTCATTCTCCTGCTGTGG
2401 GGGTATGCCCACCTCTTACCCCCTTGACACCATAGGGCTGCTGTGGCTGGGCCTCACCAGCACTGTCTTTTGTGTGACTC
2481 ATGGCATCCTCGTTCATCCCCACCGTGCCTAGCAGGCCTTCCTTTTCACCACCTCGGAACGCTTGCCTTTCCTCCCTCCA
2561 CAACAGGACGCTGTGCCTCAGTCCTTCACCTACCTCGCCACTCTGCCACTGTCCCCATTGGTCCTTTCTCCTAAACTGGT
2641 CTTTGTGCTCTCTTTGTTTTTTCTTATTTCCCTCTTGTCTCTCATTTTTTCTTCCCATTCCCCTCCCATTTCAGCCCTTA
2721 ACTTTTCTCTTTCCCATCTCCACTCAGTATTCCAATGGCAAACCCTGATGATGTAACACCTGCGATGAGACATCGGACTC
2801 TCCGGAACTTTCTCATCTGACACGTCTTTTTCCCAGGGTTCGTACTTCTCCTCCATTGGTCCCAGGCTAACTCCCCTGTT
2881 CCTCTGTGGTGTCTGTCAGTCCGTCTGTCTTCTCTTTCCTCTGCCCTTCCCACAGGGCAGTATCTGCTGATGGATTCAGT
2961 CCTGGTGTGTGATTGTTGTGATTTGTTCTTCCGTGCGCAAAAGGAAGAGGGCTTTTTGAGTCCCTTCCAAGTGAGATTGT
3041 AAATGTAGAATTTTCCACTGTTGGATCTAGATTTTTTTTCCTTTTTTTTGGGGGGGTGGGGTTACAGAGCTGAGACCTTG
3121 TGCATGCATGTAGAAAATTGTAAAATGTAAATTTTTTTTAATATATAAAAAGCTTGTTTCTACAGTTTGCAGTGGATCTA
3201 AACATTACGGCAATTTTAGGATTTTTTTCTTAAACATAGGAACTAAAACTGTACAAATTTTTTTTATATAAAATAAAGAC
3281 ATTTGACTTTTGTGGGGGCAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cgGUUC--CCUUACC----GUCCCUUUa 5'
            ||:|  ||::|||     ||||||| 
Target 5' agCAGGTTGGGGTGGGGGAGAGGGAAAg 3'
1938 - 1965 156.00 -18.70
2
miRNA  3' cgGUUCCCUUACCGUCCCUUUa 5'
            | ||||| |  :||||:|| 
Target 5' ttCCAGGGACT--TAGGGGAAg 3'
715 - 734 144.00 -18.50
3
miRNA  3' cgGUUCCCUUACCGUCCCUUUa 5'
            ||:|||:| |   |||||| 
Target 5' agCAGGGGGA-GT--GGGAAAc 3'
10 - 28 130.00 -17.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31496203 17 COSMIC
COSN30479786 18 COSMIC
COSN31509328 23 COSMIC
COSN31492230 34 COSMIC
COSN30152908 43 COSMIC
COSN20073923 44 COSMIC
COSN20124394 54 COSMIC
COSN30541454 106 COSMIC
COSN1090852 119 COSMIC
COSN20095478 119 COSMIC
COSN31518711 153 COSMIC
COSN31490898 231 COSMIC
COSN32055689 373 COSMIC
COSN17199082 677 COSMIC
COSN8645672 692 COSMIC
COSN20668854 744 COSMIC
COSN8636541 914 COSMIC
COSN31589652 1037 COSMIC
COSN24708690 1039 COSMIC
COSN31481443 1043 COSMIC
COSN30176331 1052 COSMIC
COSN31584265 1093 COSMIC
COSN1090853 1157 COSMIC
COSN26549383 1201 COSMIC
COSN20577820 1612 COSMIC
COSN31522169 1659 COSMIC
COSN30540755 1731 COSMIC
COSN31535261 1770 COSMIC
COSN30538862 1797 COSMIC
COSN21234536 1824 COSMIC
COSN26664606 1892 COSMIC
COSN8636542 1903 COSMIC
COSN31545496 2058 COSMIC
COSN31535874 2080 COSMIC
COSN29092099 2208 COSMIC
COSN30159240 2208 COSMIC
COSN29864837 2209 COSMIC
COSN31484370 2338 COSMIC
COSN31490875 2390 COSMIC
COSN22470643 2404 COSMIC
COSN28765085 2461 COSMIC
COSN23998374 2509 COSMIC
COSN31611032 2535 COSMIC
COSN31557140 2537 COSMIC
COSN14873458 2570 COSMIC
COSN31523181 2647 COSMIC
COSN31590951 2805 COSMIC
COSN31538490 2938 COSMIC
COSN26601269 2952 COSMIC
COSN31485931 2992 COSMIC
COSN20095481 3080 COSMIC
COSN23472343 3080 COSMIC
COSN23474298 3082 COSMIC
COSN23472860 3090 COSMIC
COSN31545681 3090 COSMIC
COSN31521692 3097 COSMIC
COSN31519663 3170 COSMIC
COSN22839984 3188 COSMIC
rs66513715 3073 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs895556585 4 dbSNP
rs754320416 7 dbSNP
rs1459852984 8 dbSNP
rs367833005 12 dbSNP
rs1336652964 15 dbSNP
rs770638046 16 dbSNP
rs1437992173 18 dbSNP
rs778825183 19 dbSNP
rs1360909248 20 dbSNP
rs779522164 21 dbSNP
rs750844769 22 dbSNP
rs879137375 23 dbSNP
rs1333178225 25 dbSNP
rs1213416882 28 dbSNP
rs747198407 29 dbSNP
rs758511922 31 dbSNP
rs779942237 32 dbSNP
rs367760312 35 dbSNP
rs1022648492 37 dbSNP
rs745643253 38 dbSNP
rs768934321 38 dbSNP
rs772463289 39 dbSNP
rs781365298 40 dbSNP
rs747990480 41 dbSNP
rs371769736 42 dbSNP
rs775831141 42 dbSNP
rs760856826 43 dbSNP
rs773235199 43 dbSNP
rs762728954 44 dbSNP
rs770485421 46 dbSNP
rs768813553 48 dbSNP
rs777005365 49 dbSNP
rs762327524 50 dbSNP
rs774057875 50 dbSNP
rs759109814 51 dbSNP
rs763275875 52 dbSNP
rs1170337404 54 dbSNP
rs896771353 54 dbSNP
rs970100007 59 dbSNP
rs1485799567 69 dbSNP
rs1473593921 74 dbSNP
rs994441729 77 dbSNP
rs1215103042 93 dbSNP
rs1237647067 93 dbSNP
rs1440134319 106 dbSNP
rs1213134403 109 dbSNP
rs1381643078 109 dbSNP
rs5778163 109 dbSNP
rs1284940974 111 dbSNP
rs1447394470 113 dbSNP
rs1265709003 117 dbSNP
rs397787256 119 dbSNP
rs549859466 130 dbSNP
rs569780418 131 dbSNP
rs1412678573 132 dbSNP
rs1166509303 133 dbSNP
rs1425278204 134 dbSNP
rs553874861 134 dbSNP
rs529068314 135 dbSNP
rs1180997417 137 dbSNP
rs912011458 141 dbSNP
rs1253404462 142 dbSNP
rs1182226149 146 dbSNP
rs966169869 147 dbSNP
rs888853357 152 dbSNP
rs1007505379 153 dbSNP
rs1452901448 169 dbSNP
rs548291085 176 dbSNP
rs1228019947 182 dbSNP
rs1362216218 183 dbSNP
rs1400447537 186 dbSNP
rs548886097 199 dbSNP
rs1290326656 201 dbSNP
rs777238880 203 dbSNP
rs116704055 205 dbSNP
rs769853946 206 dbSNP
rs1296315330 211 dbSNP
rs1031232929 213 dbSNP
rs1049358620 217 dbSNP
rs958047939 222 dbSNP
rs1316417191 229 dbSNP
rs989467664 235 dbSNP
rs1163784914 239 dbSNP
rs908125605 245 dbSNP
rs113504414 246 dbSNP
rs1159283473 252 dbSNP
rs1238604245 253 dbSNP
rs776556784 272 dbSNP
rs377202712 277 dbSNP
rs1288852825 282 dbSNP
rs188923896 283 dbSNP
rs1489745867 285 dbSNP
rs1247705969 288 dbSNP
rs1221246367 290 dbSNP
rs1332992141 295 dbSNP
rs1229092419 297 dbSNP
rs1210662173 300 dbSNP
rs1236112844 302 dbSNP
rs1482045828 312 dbSNP
rs1388502441 315 dbSNP
rs1183256037 320 dbSNP
rs1056538959 330 dbSNP
rs1292756664 334 dbSNP
rs558081870 336 dbSNP
rs1390399060 337 dbSNP
rs1159355224 340 dbSNP
rs1456373324 346 dbSNP
rs1361619091 348 dbSNP
rs1177577115 349 dbSNP
rs982566495 350 dbSNP
rs1190996584 354 dbSNP
rs1467369371 356 dbSNP
rs571261221 357 dbSNP
rs1156759234 359 dbSNP
rs1209663471 360 dbSNP
rs866339895 360 dbSNP
rs940491257 362 dbSNP
rs1036258344 369 dbSNP
rs1044505893 371 dbSNP
rs1235456902 372 dbSNP
rs1382151101 383 dbSNP
rs1420052421 386 dbSNP
rs1300430492 394 dbSNP
rs905531302 398 dbSNP
rs370367546 404 dbSNP
rs1367177595 410 dbSNP
rs1433966736 413 dbSNP
rs1382286394 416 dbSNP
rs1357227311 422 dbSNP
rs1304102574 436 dbSNP
rs1360257161 441 dbSNP
rs1466054267 441 dbSNP
rs920496549 443 dbSNP
rs1203179053 451 dbSNP
rs537058739 454 dbSNP
rs1050043826 455 dbSNP
rs1303708744 456 dbSNP
rs888741948 473 dbSNP
rs1444713376 475 dbSNP
rs1312055999 476 dbSNP
rs1428170141 476 dbSNP
rs1008654198 478 dbSNP
rs1202257886 482 dbSNP
rs1234227190 486 dbSNP
rs1276881420 488 dbSNP
rs879015408 493 dbSNP
rs374365752 498 dbSNP
rs1255482444 504 dbSNP
rs1013734419 505 dbSNP
rs1208709417 507 dbSNP
rs1040496843 526 dbSNP
rs112615589 536 dbSNP
rs901356899 538 dbSNP
rs1211796295 540 dbSNP
rs1000083348 542 dbSNP
rs1324335356 545 dbSNP
rs1314351364 547 dbSNP
rs1031286624 550 dbSNP
rs773276182 552 dbSNP
rs894054692 561 dbSNP
rs1310521774 562 dbSNP
rs775013459 572 dbSNP
rs974856006 572 dbSNP
rs1010950196 575 dbSNP
rs1169643663 600 dbSNP
rs1461744960 602 dbSNP
rs1371558221 603 dbSNP
rs1189956047 629 dbSNP
rs1023645114 630 dbSNP
rs565924406 644 dbSNP
rs1440172873 653 dbSNP
rs574664541 664 dbSNP
rs1484012933 668 dbSNP
rs557001247 669 dbSNP
rs573818391 672 dbSNP
rs982232252 674 dbSNP
rs1035490849 675 dbSNP
rs1266977689 686 dbSNP
rs746023293 689 dbSNP
rs908156875 692 dbSNP
rs961930425 693 dbSNP
rs1177026776 701 dbSNP
rs543140956 707 dbSNP
rs553281251 710 dbSNP
rs992341304 718 dbSNP
rs1391314123 723 dbSNP
rs918100347 729 dbSNP
rs1464288249 736 dbSNP
rs76875875 737 dbSNP
rs866722354 743 dbSNP
rs1440733107 750 dbSNP
rs905602518 760 dbSNP
rs930561219 768 dbSNP
rs545329812 769 dbSNP
rs1181071730 770 dbSNP
rs1435988926 772 dbSNP
rs1054106853 776 dbSNP
rs1370170173 778 dbSNP
rs910229747 781 dbSNP
rs944345568 783 dbSNP
rs1333738479 790 dbSNP
rs1270822737 794 dbSNP
rs1229705208 796 dbSNP
rs565584897 828 dbSNP
rs1040145327 829 dbSNP
rs1287145056 836 dbSNP
rs1278855427 849 dbSNP
rs1334477668 851 dbSNP
rs376195016 855 dbSNP
rs543461367 856 dbSNP
rs1316878045 858 dbSNP
rs1196394945 860 dbSNP
rs193099907 861 dbSNP
rs1457875662 862 dbSNP
rs1198061187 869 dbSNP
rs1459007084 882 dbSNP
rs1052601947 884 dbSNP
rs1412854820 894 dbSNP
rs1244959019 896 dbSNP
rs1478867840 898 dbSNP
rs879336275 903 dbSNP
rs1018832636 904 dbSNP
rs1021134532 914 dbSNP
rs1379242929 922 dbSNP
rs901714862 931 dbSNP
rs893940736 939 dbSNP
rs1467816302 950 dbSNP
rs78894261 956 dbSNP
rs1191511486 967 dbSNP
rs1029107394 978 dbSNP
rs372404659 984 dbSNP
rs1023864624 986 dbSNP
rs905210761 987 dbSNP
rs1221536395 992 dbSNP
rs984816792 994 dbSNP
rs796785157 996 dbSNP
rs759902172 997 dbSNP
rs41266895 999 dbSNP
rs775915305 1001 dbSNP
rs1389599769 1008 dbSNP
rs1404900498 1008 dbSNP
rs918161803 1009 dbSNP
rs1398961115 1013 dbSNP
rs1404279916 1015 dbSNP
rs369533754 1019 dbSNP
rs981337680 1020 dbSNP
rs1393096426 1025 dbSNP
rs962431895 1036 dbSNP
rs1190238793 1038 dbSNP
rs143919318 1039 dbSNP
rs1241109717 1040 dbSNP
rs536015101 1041 dbSNP
rs1443707773 1049 dbSNP
rs1054170464 1050 dbSNP
rs3795337 1054 dbSNP
rs1347750846 1056 dbSNP
rs945689226 1060 dbSNP
rs986027342 1063 dbSNP
rs1362932649 1083 dbSNP
rs1269751032 1087 dbSNP
rs1216408997 1088 dbSNP
rs1342404768 1090 dbSNP
rs551223583 1092 dbSNP
rs996047066 1093 dbSNP
rs944416267 1098 dbSNP
rs1317968942 1099 dbSNP
rs1430102873 1102 dbSNP
rs1418523034 1104 dbSNP
rs868581757 1111 dbSNP
rs749943575 1112 dbSNP
rs1029260189 1114 dbSNP
rs976145897 1115 dbSNP
rs1208762558 1117 dbSNP
rs571224226 1119 dbSNP
rs887588730 1120 dbSNP
rs185515799 1122 dbSNP
rs1222230599 1133 dbSNP
rs924423813 1134 dbSNP
rs934398783 1136 dbSNP
rs1358702366 1137 dbSNP
rs1294019919 1157 dbSNP
rs1262123948 1158 dbSNP
rs1476759490 1159 dbSNP
rs1054173385 1163 dbSNP
rs556921302 1170 dbSNP
rs35990921 1181 dbSNP
rs1168020330 1183 dbSNP
rs1406766986 1184 dbSNP
rs567363556 1185 dbSNP
rs536343134 1186 dbSNP
rs1473899428 1188 dbSNP
rs553435295 1189 dbSNP
rs1253332611 1196 dbSNP
rs763441239 1199 dbSNP
rs905432503 1207 dbSNP
rs1481234924 1211 dbSNP
rs1232706640 1215 dbSNP
rs1453563752 1229 dbSNP
rs1003583192 1231 dbSNP
rs1232757816 1234 dbSNP
rs758034326 1240 dbSNP
rs41266897 1245 dbSNP
rs993554082 1258 dbSNP
rs1224309040 1259 dbSNP
rs981025787 1262 dbSNP
rs1296260704 1268 dbSNP
rs925449100 1269 dbSNP
rs1027670504 1279 dbSNP
rs1298191872 1284 dbSNP
rs1359008609 1298 dbSNP
rs1324878395 1307 dbSNP
rs1459540905 1309 dbSNP
rs545597678 1316 dbSNP
rs1159224392 1318 dbSNP
rs1420241564 1322 dbSNP
rs958150946 1335 dbSNP
rs1299618036 1358 dbSNP
rs1489632863 1368 dbSNP
rs746672918 1372 dbSNP
rs951903585 1383 dbSNP
rs1243637419 1398 dbSNP
rs1213355623 1400 dbSNP
rs1281858797 1404 dbSNP
rs912977042 1407 dbSNP
rs1357850152 1416 dbSNP
rs1007332574 1420 dbSNP
rs559263754 1433 dbSNP
rs768450412 1435 dbSNP
rs1285298109 1443 dbSNP
rs966353752 1452 dbSNP
rs1040425943 1464 dbSNP
rs573042859 1466 dbSNP
rs1220865176 1468 dbSNP
rs575984616 1471 dbSNP
rs1302391297 1473 dbSNP
rs114169273 1477 dbSNP
rs989918089 1484 dbSNP
rs1442010878 1494 dbSNP
rs1185707923 1495 dbSNP
rs914307523 1499 dbSNP
rs1345121298 1502 dbSNP
rs1239280184 1506 dbSNP
rs1473199938 1516 dbSNP
rs1158548069 1525 dbSNP
rs946898894 1526 dbSNP
rs1006008006 1528 dbSNP
rs1045635590 1533 dbSNP
rs563266644 1534 dbSNP
rs769705908 1559 dbSNP
rs1159574361 1560 dbSNP
rs72706696 1561 dbSNP
rs1025416580 1562 dbSNP
rs1056688002 1570 dbSNP
rs1348471918 1574 dbSNP
rs1395018014 1577 dbSNP
rs1279384679 1581 dbSNP
rs1231745283 1588 dbSNP
rs1331871649 1594 dbSNP
rs1468742668 1605 dbSNP
rs1341732505 1612 dbSNP
rs969390468 1614 dbSNP
rs1295764436 1631 dbSNP
rs897846719 1632 dbSNP
rs12044330 1639 dbSNP
rs559409922 1651 dbSNP
rs1437157288 1653 dbSNP
rs958224233 1654 dbSNP
rs887854124 1656 dbSNP
rs180756867 1657 dbSNP
rs551184791 1658 dbSNP
rs1194233599 1661 dbSNP
rs564766030 1666 dbSNP
rs1428115255 1667 dbSNP
rs1402771486 1669 dbSNP
rs1183637823 1671 dbSNP
rs965871135 1674 dbSNP
rs1256647912 1680 dbSNP
rs74354966 1681 dbSNP
rs975828249 1695 dbSNP
rs922937577 1700 dbSNP
rs931627992 1711 dbSNP
rs368528641 1716 dbSNP
rs771027925 1720 dbSNP
rs909127115 1726 dbSNP
rs550507966 1727 dbSNP
rs1414803731 1730 dbSNP
rs1356661504 1746 dbSNP
rs1281052442 1750 dbSNP
rs941898491 1757 dbSNP
rs1036138008 1759 dbSNP
rs1168824999 1761 dbSNP
rs185218371 1766 dbSNP
rs1371507226 1778 dbSNP
rs1014103082 1782 dbSNP
rs1475538821 1786 dbSNP
rs1046433653 1787 dbSNP
rs774580633 1788 dbSNP
rs536657408 1799 dbSNP
rs905229472 1800 dbSNP
rs1236455001 1803 dbSNP
rs914360177 1805 dbSNP
rs1194963508 1806 dbSNP
rs1479460722 1806 dbSNP
rs1179816477 1809 dbSNP
rs1233514864 1818 dbSNP
rs149428974 1818 dbSNP
rs1333587681 1824 dbSNP
rs1290875829 1826 dbSNP
rs1377417019 1835 dbSNP
rs979839268 1836 dbSNP
rs1009798146 1839 dbSNP
rs1391125463 1843 dbSNP
rs926794007 1856 dbSNP
rs1328256163 1859 dbSNP
rs1021146011 1862 dbSNP
rs1393897679 1870 dbSNP
rs1162830470 1873 dbSNP
rs1471131957 1875 dbSNP
rs965502624 1876 dbSNP
rs1180823894 1877 dbSNP
rs1417149941 1886 dbSNP
rs1254629977 1889 dbSNP
rs1213981817 1891 dbSNP
rs939509592 1895 dbSNP
rs1467726298 1898 dbSNP
rs1403960444 1899 dbSNP
rs566975605 1913 dbSNP
rs919494317 1917 dbSNP
rs976239429 1921 dbSNP
rs538782511 1922 dbSNP
rs751815959 1931 dbSNP
rs1334417063 1933 dbSNP
rs559182249 1941 dbSNP
rs749898007 1952 dbSNP
rs1330274217 1953 dbSNP
rs909160207 1954 dbSNP
rs575953199 1955 dbSNP
rs941963912 1959 dbSNP
rs1385756461 1966 dbSNP
rs1257574076 1967 dbSNP
rs1324472120 1969 dbSNP
rs971930031 1974 dbSNP
rs1039087948 1986 dbSNP
rs538537346 1991 dbSNP
rs1396700285 1992 dbSNP
rs949242469 1994 dbSNP
rs1046958941 2004 dbSNP
rs1250692941 2011 dbSNP
rs1267329772 2019 dbSNP
rs901692570 2023 dbSNP
rs938040055 2027 dbSNP
rs1282926644 2029 dbSNP
rs1053801554 2031 dbSNP
rs1201414643 2039 dbSNP
rs1352111988 2043 dbSNP
rs1378598406 2044 dbSNP
rs759481871 2047 dbSNP
rs1009825878 2049 dbSNP
rs893788960 2049 dbSNP
rs767612772 2057 dbSNP
rs1169527147 2068 dbSNP
rs1021183661 2072 dbSNP
rs901371829 2075 dbSNP
rs1317686822 2078 dbSNP
rs1380487214 2080 dbSNP
rs998361312 2084 dbSNP
rs540387247 2086 dbSNP
rs1324739 2087 dbSNP
rs1393036912 2091 dbSNP
rs1169346961 2093 dbSNP
rs1241058477 2094 dbSNP
rs1298648312 2094 dbSNP
rs1011288935 2095 dbSNP
rs1385028164 2105 dbSNP
rs1487601243 2105 dbSNP
rs1260144090 2111 dbSNP
rs1212219866 2115 dbSNP
rs1347685145 2119 dbSNP
rs986254039 2123 dbSNP
rs1216584633 2130 dbSNP
rs1340267946 2131 dbSNP
rs1269692562 2132 dbSNP
rs766002826 2133 dbSNP
rs1303057872 2141 dbSNP
rs542625492 2143 dbSNP
rs373607208 2147 dbSNP
rs1345913029 2164 dbSNP
rs1015900031 2176 dbSNP
rs112160063 2177 dbSNP
rs1207000211 2177 dbSNP
rs1236114183 2177 dbSNP
rs1365465005 2177 dbSNP
rs1485611119 2177 dbSNP
rs1218240152 2181 dbSNP
rs1438625708 2183 dbSNP
rs1272479275 2185 dbSNP
rs1276603298 2186 dbSNP
rs980275435 2188 dbSNP
rs559155676 2196 dbSNP
rs1293960645 2202 dbSNP
rs971961008 2202 dbSNP
rs544937149 2204 dbSNP
rs34548458 2208 dbSNP
rs865989954 2209 dbSNP
rs1394626669 2217 dbSNP
rs1163526417 2220 dbSNP
rs1264973145 2224 dbSNP
rs1487765664 2226 dbSNP
rs919175233 2227 dbSNP
rs753782718 2237 dbSNP
rs961187028 2248 dbSNP
rs1412184266 2258 dbSNP
rs1179328341 2276 dbSNP
rs992329416 2294 dbSNP
rs1232655329 2296 dbSNP
rs949268926 2305 dbSNP
rs1469968444 2312 dbSNP
rs919547970 2318 dbSNP
rs1273925879 2320 dbSNP
rs1212167968 2326 dbSNP
rs1269967267 2327 dbSNP
rs1488207963 2330 dbSNP
rs1319857041 2337 dbSNP
rs1309139855 2341 dbSNP
rs572873787 2345 dbSNP
rs1372409231 2356 dbSNP
rs929563289 2373 dbSNP
rs984972704 2374 dbSNP
rs909230170 2378 dbSNP
rs544743469 2390 dbSNP
rs1442685585 2392 dbSNP
rs1455877553 2399 dbSNP
rs926422127 2399 dbSNP
rs943361366 2399 dbSNP
rs564733902 2403 dbSNP
rs1053831280 2404 dbSNP
rs1407766848 2413 dbSNP
rs893820057 2419 dbSNP
rs757175553 2423 dbSNP
rs1193236582 2424 dbSNP
rs901914543 2430 dbSNP
rs1042700832 2431 dbSNP
rs574634113 2434 dbSNP
rs901405896 2439 dbSNP
rs1478616366 2441 dbSNP
rs1170472130 2442 dbSNP
rs1367392126 2449 dbSNP
rs114859872 2461 dbSNP
rs1049937337 2464 dbSNP
rs1052940196 2468 dbSNP
rs1384704855 2473 dbSNP
rs1007264085 2479 dbSNP
rs1288915884 2483 dbSNP
rs891598723 2486 dbSNP
rs1360394501 2492 dbSNP
rs1011509029 2493 dbSNP
rs1296549226 2495 dbSNP
rs993108016 2497 dbSNP
rs1175682150 2504 dbSNP
rs7523376 2505 dbSNP
rs970684597 2506 dbSNP
rs1187130154 2509 dbSNP
rs982414484 2517 dbSNP
rs926480739 2518 dbSNP
rs1212932989 2528 dbSNP
rs905548416 2531 dbSNP
rs1001193620 2532 dbSNP
rs1035879017 2536 dbSNP
rs144859846 2537 dbSNP
rs1293217782 2541 dbSNP
rs1213418933 2542 dbSNP
rs1340457846 2546 dbSNP
rs530013557 2548 dbSNP
rs1353398005 2555 dbSNP
rs972416870 2562 dbSNP
rs945382352 2570 dbSNP
rs546948634 2571 dbSNP
rs1026449158 2583 dbSNP
rs922565018 2588 dbSNP
rs950856613 2596 dbSNP
rs1186744396 2597 dbSNP
rs985025494 2601 dbSNP
rs1477573612 2607 dbSNP
rs1421560567 2614 dbSNP
rs1190046906 2615 dbSNP
rs1485942470 2618 dbSNP
rs1256585692 2627 dbSNP
rs909450906 2631 dbSNP
rs748029039 2636 dbSNP
rs934277480 2638 dbSNP
rs1050390975 2639 dbSNP
rs974764228 2646 dbSNP
rs1166800062 2648 dbSNP
rs1028212379 2649 dbSNP
rs1294559507 2653 dbSNP
rs1419059286 2673 dbSNP
rs1356602256 2687 dbSNP
rs1312471611 2688 dbSNP
rs1394582129 2693 dbSNP
rs1399074260 2695 dbSNP
rs148555103 2697 dbSNP
rs1299019499 2706 dbSNP
rs142907326 2717 dbSNP
rs1465281734 2720 dbSNP
rs750122573 2724 dbSNP
rs933425244 2736 dbSNP
rs1367764307 2739 dbSNP
rs1362237433 2747 dbSNP
rs1420725488 2755 dbSNP
rs1250942423 2760 dbSNP
rs1431670831 2768 dbSNP
rs1177667095 2770 dbSNP
rs1053161456 2776 dbSNP
rs1005665827 2777 dbSNP
rs1456142590 2783 dbSNP
rs554196774 2784 dbSNP
rs552754315 2785 dbSNP
rs1336109268 2786 dbSNP
rs1346835875 2794 dbSNP
rs1397913013 2795 dbSNP
rs913085081 2796 dbSNP
rs1308124039 2798 dbSNP
rs1446365943 2799 dbSNP
rs569429218 2804 dbSNP
rs1043022400 2805 dbSNP
rs1238626049 2806 dbSNP
rs1461971711 2815 dbSNP
rs758231356 2817 dbSNP
rs905770118 2824 dbSNP
rs959232522 2825 dbSNP
rs538452917 2828 dbSNP
rs1056801438 2838 dbSNP
rs146127128 2842 dbSNP
rs532649279 2843 dbSNP
rs1450597244 2848 dbSNP
rs11265391 2852 dbSNP
rs1243248992 2856 dbSNP
rs1025324051 2858 dbSNP
rs922629175 2866 dbSNP
rs1353422038 2868 dbSNP
rs950910123 2876 dbSNP
rs933949373 2879 dbSNP
rs1176707151 2882 dbSNP
rs1305988614 2885 dbSNP
rs754438898 2903 dbSNP
rs1016962826 2904 dbSNP
rs534253893 2914 dbSNP
rs975363161 2915 dbSNP
rs1385502502 2925 dbSNP
rs757944152 2931 dbSNP
rs1417701634 2934 dbSNP
rs552918350 2945 dbSNP
rs1357602043 2964 dbSNP
rs923307058 2980 dbSNP
rs1477475143 2981 dbSNP
rs1375460759 2982 dbSNP
rs1194635837 2989 dbSNP
rs572796845 2993 dbSNP
rs577172258 2998 dbSNP
rs913304510 3003 dbSNP
rs897307937 3008 dbSNP
rs552855589 3010 dbSNP
rs947235880 3033 dbSNP
rs1220063125 3035 dbSNP
rs1344517864 3036 dbSNP
rs1273163928 3038 dbSNP
rs929062177 3045 dbSNP
rs1327097254 3051 dbSNP
rs1297564882 3056 dbSNP
rs1398043298 3057 dbSNP
rs1278562153 3065 dbSNP
rs1377088943 3066 dbSNP
rs1047902883 3071 dbSNP
rs1413577851 3071 dbSNP
rs1422549791 3072 dbSNP
rs397981684 3072 dbSNP
rs66513715 3072 dbSNP
rs906233832 3076 dbSNP
rs12240151 3080 dbSNP
rs11265392 3082 dbSNP
rs1445204510 3082 dbSNP
rs1260074963 3087 dbSNP
rs544657544 3088 dbSNP
rs12240152 3090 dbSNP
rs1276854457 3090 dbSNP
rs1442061578 3090 dbSNP
rs575060977 3091 dbSNP
rs1033624938 3092 dbSNP
rs1216757308 3093 dbSNP
rs895050669 3095 dbSNP
rs1284582108 3096 dbSNP
rs1299686586 3098 dbSNP
rs1446933178 3099 dbSNP
rs1357213646 3109 dbSNP
rs1010799621 3110 dbSNP
rs1410165429 3111 dbSNP
rs1398974509 3116 dbSNP
rs1022155147 3117 dbSNP
rs1464530332 3119 dbSNP
rs1420565499 3121 dbSNP
rs1182941750 3129 dbSNP
rs751167416 3132 dbSNP
rs544022639 3138 dbSNP
rs978207444 3143 dbSNP
rs1030150094 3145 dbSNP
rs1257530190 3150 dbSNP
rs1057406873 3152 dbSNP
rs1196763534 3152 dbSNP
rs1290592999 3152 dbSNP
rs895499963 3153 dbSNP
rs1227662594 3166 dbSNP
rs1376770995 3168 dbSNP
rs993774912 3189 dbSNP
rs546175695 3191 dbSNP
rs1447086458 3198 dbSNP
rs1263149802 3205 dbSNP
rs1375619535 3207 dbSNP
rs888189661 3209 dbSNP
rs780956534 3210 dbSNP
rs1394559489 3214 dbSNP
rs1016437448 3218 dbSNP
rs181276672 3220 dbSNP
rs1234580747 3222 dbSNP
rs531581868 3237 dbSNP
rs1470373107 3244 dbSNP
rs1412116048 3245 dbSNP
rs965209355 3251 dbSNP
rs540201241 3252 dbSNP
rs1030979572 3253 dbSNP
rs954720445 3257 dbSNP
rs202026343 3258 dbSNP
rs571881430 3258 dbSNP
rs930137661 3258 dbSNP
rs988801580 3258 dbSNP
rs1220798926 3267 dbSNP
rs1319815660 3268 dbSNP
rs913356920 3269 dbSNP
rs1352704474 3275 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cggUUCCCUUACCGUCCCUuua 5'
             || ||| |    ||||   
Target 5' --gAAAGGAUUU---GGGAucu 3'
1 - 17
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000368061.2 | 3UTR | GAGAGGGAAAGGAUUUGGGAUCUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000368061.2 | 3UTR | GAAAGGAUUUGGGAUCUUAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
223 hsa-miR-4446-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT078060 PCTP phosphatidylcholine transfer protein 2 2
MIRT099072 FOXC1 forkhead box C1 2 2
MIRT130186 TXNIP thioredoxin interacting protein 2 2
MIRT148786 NARS asparaginyl-tRNA synthetase 2 2
MIRT261965 SEPHS1 selenophosphate synthetase 1 2 2
MIRT345867 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT409087 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT451883 SOD2 superoxide dismutase 2 2 4
MIRT469236 RHOB ras homolog family member B 2 2
MIRT469435 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT483055 FOXB1 forkhead box B1 2 8
MIRT484640 TBC1D5 TBC1 domain family member 5 2 6
MIRT493106 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 6
MIRT497307 TMEFF2 transmembrane protein with EGF like and two follistatin like domains 2 2 2
MIRT497798 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT501273 SCARB2 scavenger receptor class B member 2 2 4
MIRT506756 KMT2D lysine methyltransferase 2D 2 2
MIRT511986 EEF2 eukaryotic translation elongation factor 2 2 4
MIRT513126 ZNF431 zinc finger protein 431 2 2
MIRT519733 ZNF394 zinc finger protein 394 2 4
MIRT520351 UBE2K ubiquitin conjugating enzyme E2 K 2 4
MIRT520542 TPPP tubulin polymerization promoting protein 2 8
MIRT530782 HDHD2 haloacid dehalogenase like hydrolase domain containing 2 2 2
MIRT531112 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT532144 GALNT8 polypeptide N-acetylgalactosaminyltransferase 8 2 2
MIRT533208 WAPAL WAPL cohesin release factor 2 2
MIRT533419 TWF1 twinfilin actin binding protein 1 2 2
MIRT534063 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT534288 SLAIN2 SLAIN motif family member 2 2 2
MIRT537796 EFNB2 ephrin B2 2 2
MIRT538017 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT538058 DMD dystrophin 2 2
MIRT538132 DDI2 DNA damage inducible 1 homolog 2 2 2
MIRT538680 CCDC80 coiled-coil domain containing 80 2 2
MIRT538788 C3orf52 chromosome 3 open reading frame 52 2 2
MIRT542762 PPAP2B phospholipid phosphatase 3 2 2
MIRT546861 RAB10 RAB10, member RAS oncogene family 2 4
MIRT547418 MED4 mediator complex subunit 4 2 4
MIRT551633 TRUB1 TruB pseudouridine synthase family member 1 2 4
MIRT552329 ZNF704 zinc finger protein 704 2 2
MIRT556124 MFSD9 major facilitator superfamily domain containing 9 2 4
MIRT559290 ATXN1 ataxin 1 2 2
MIRT562125 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT563777 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 2 2
MIRT564430 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT566102 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 2
MIRT567126 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 2
MIRT571213 RRS1 ribosome biogenesis regulator homolog 2 2
MIRT571939 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT571967 KIF21A kinesin family member 21A 2 2
MIRT606792 IL1RAPL1 interleukin 1 receptor accessory protein like 1 2 8
MIRT607351 TNS1 tensin 1 2 4
MIRT609416 GJB7 gap junction protein beta 7 2 4
MIRT609522 AZI2 5-azacytidine induced 2 2 4
MIRT611218 FAM174B family with sequence similarity 174 member B 2 2
MIRT611385 TRIP10 thyroid hormone receptor interactor 10 2 2
MIRT612053 KLB klotho beta 2 4
MIRT612102 CHRM3 cholinergic receptor muscarinic 3 2 2
MIRT612146 SIX1 SIX homeobox 1 2 4
MIRT612488 SIX3 SIX homeobox 3 2 4
MIRT613685 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT613763 TTC38 tetratricopeptide repeat domain 38 2 2
MIRT613876 FGD1 FYVE, RhoGEF and PH domain containing 1 2 2
MIRT613965 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 4
MIRT614894 PAPOLG poly(A) polymerase gamma 2 2
MIRT614912 NFIA nuclear factor I A 2 2
MIRT615013 ERGIC2 ERGIC and golgi 2 2 2
MIRT615106 BCL7A BCL tumor suppressor 7A 2 2
MIRT615242 FAM227A family with sequence similarity 227 member A 2 4
MIRT615695 NEGR1 neuronal growth regulator 1 2 2
MIRT615956 ERBB3 erb-b2 receptor tyrosine kinase 3 2 4
MIRT615979 FSTL4 follistatin like 4 2 2
MIRT616053 PTPRE protein tyrosine phosphatase, receptor type E 2 4
MIRT616073 TBX2 T-box 2 2 4
MIRT616234 NPAS3 neuronal PAS domain protein 3 2 2
MIRT616306 CELF2 CUGBP Elav-like family member 2 2 2
MIRT616474 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT616662 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2 2
MIRT616887 ATP5E ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit 2 2
MIRT616902 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT617025 SYT6 synaptotagmin 6 2 2
MIRT617162 SLC16A5 solute carrier family 16 member 5 2 2
MIRT617318 DPF3 double PHD fingers 3 2 2
MIRT617792 CHRM2 cholinergic receptor muscarinic 2 2 2
MIRT618418 DNAJC30 DnaJ heat shock protein family (Hsp40) member C30 2 2
MIRT618663 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT620212 VN1R1 vomeronasal 1 receptor 1 2 2
MIRT620413 TFDP3 transcription factor Dp family member 3 2 2
MIRT620667 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT620709 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT620956 SFT2D2 SFT2 domain containing 2 2 2
MIRT621225 LMAN1 lectin, mannose binding 1 2 2
MIRT621333 SLC11A1 solute carrier family 11 member 1 2 2
MIRT621696 TSKU tsukushi, small leucine rich proteoglycan 2 2
MIRT623484 KCTD11 potassium channel tetramerization domain containing 11 2 2
MIRT623777 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT624215 DCAF5 DDB1 and CUL4 associated factor 5 2 2
MIRT624675 ARAP2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 2 2
MIRT627369 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT628252 EFCAB14 EF-hand calcium binding domain 14 2 2
MIRT630790 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT635631 PRR15L proline rich 15 like 2 2
MIRT636425 MARCH1 membrane associated ring-CH-type finger 1 2 2
MIRT637295 ACTN2 actinin alpha 2 2 2
MIRT637345 PIGP phosphatidylinositol glycan anchor biosynthesis class P 2 2
MIRT637842 SLC2A9 solute carrier family 2 member 9 2 2
MIRT638327 RCAN1 regulator of calcineurin 1 2 2
MIRT638375 RABL3 RAB, member of RAS oncogene family like 3 2 2
MIRT638751 EPHA4 EPH receptor A4 2 2
MIRT638965 ARHGAP6 Rho GTPase activating protein 6 2 2
MIRT639094 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT639172 CEP70 centrosomal protein 70 2 2
MIRT639254 SLC38A1 solute carrier family 38 member 1 2 4
MIRT639368 ZCCHC24 zinc finger CCHC-type containing 24 2 4
MIRT639504 CACNA1G calcium voltage-gated channel subunit alpha1 G 2 2
MIRT639644 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT640486 EXOC5 exocyst complex component 5 2 2
MIRT641424 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT641550 LIPG lipase G, endothelial type 2 2
MIRT642180 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT642656 RGS6 regulator of G protein signaling 6 2 2
MIRT642873 SAMD1 sterile alpha motif domain containing 1 2 2
MIRT643355 TRIM10 tripartite motif containing 10 2 2
MIRT643531 DNTTIP2 deoxynucleotidyltransferase terminal interacting protein 2 2 2
MIRT643998 PPP1R3G protein phosphatase 1 regulatory subunit 3G 2 2
MIRT644105 PHLPP1 PH domain and leucine rich repeat protein phosphatase 1 2 2
MIRT644421 VDR vitamin D receptor 2 2
MIRT644481 SLFN12 schlafen family member 12 2 2
MIRT644573 SPOP speckle type BTB/POZ protein 2 2
MIRT645354 SPNS1 sphingolipid transporter 1 (putative) 2 2
MIRT645383 FBLIM1 filamin binding LIM protein 1 2 2
MIRT645758 SURF6 surfeit 6 2 2
MIRT646060 VANGL2 VANGL planar cell polarity protein 2 2 2
MIRT646194 DUSP10 dual specificity phosphatase 10 2 2
MIRT647915 RGS5 regulator of G protein signaling 5 2 2
MIRT649216 AMMECR1L AMMECR1 like 2 2
MIRT649265 C17orf64 chromosome 17 open reading frame 64 2 2
MIRT649522 GTF3C3 general transcription factor IIIC subunit 3 2 2
MIRT649605 ITPKC inositol-trisphosphate 3-kinase C 2 2
MIRT650392 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT650835 SEMA4G semaphorin 4G 2 2
MIRT651273 ZDHHC5 zinc finger DHHC-type containing 5 2 2
MIRT651674 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT651763 VASP vasodilator stimulated phosphoprotein 2 2
MIRT652250 TPD52L3 tumor protein D52 like 3 2 2
MIRT652277 TOM1L2 target of myb1 like 2 membrane trafficking protein 2 2
MIRT652316 TNFSF15 TNF superfamily member 15 2 2
MIRT652342 TMOD3 tropomodulin 3 2 2
MIRT652373 TMEM57 transmembrane protein 57 2 2
MIRT652438 TMEM236 transmembrane protein 236 2 2
MIRT652723 TGFB2 transforming growth factor beta 2 2 2
MIRT652752 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT653310 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT653327 SMIM18 small integral membrane protein 18 2 2
MIRT653406 SLC7A2 solute carrier family 7 member 2 2 2
MIRT653512 SLC41A1 solute carrier family 41 member 1 2 2
MIRT653912 SERPINC1 serpin family C member 1 2 2
MIRT654111 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654153 RORB RAR related orphan receptor B 2 2
MIRT654548 RAB14 RAB14, member RAS oncogene family 2 2
MIRT654920 POLR3D RNA polymerase III subunit D 2 2
MIRT655169 PHF19 PHD finger protein 19 2 2
MIRT655412 PAN2 PAN2 poly(A) specific ribonuclease subunit 2 2
MIRT655784 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT655836 NGDN neuroguidin 2 2
MIRT656079 MTA3 metastasis associated 1 family member 3 2 2
MIRT656404 MCTP1 multiple C2 and transmembrane domain containing 1 2 2
MIRT656720 LMLN leishmanolysin like peptidase 2 2
MIRT656774 LARP1 La ribonucleoprotein domain family member 1 2 2
MIRT656922 KIAA1462 junctional cadherin 5 associated 2 2
MIRT657004 KCNMB4 potassium calcium-activated channel subfamily M regulatory beta subunit 4 2 2
MIRT657477 HCAR2 hydroxycarboxylic acid receptor 2 2 2
MIRT657539 GSTO2 glutathione S-transferase omega 2 2 2
MIRT657911 GCC1 GRIP and coiled-coil domain containing 1 2 2
MIRT658478 EXOC8 exocyst complex component 8 2 2
MIRT658612 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 2
MIRT658823 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT658965 DNAJB5 DnaJ heat shock protein family (Hsp40) member B5 2 4
MIRT659706 CCDC93 coiled-coil domain containing 93 2 2
MIRT660034 C15orf61 chromosome 15 open reading frame 61 2 2
MIRT660108 BTBD3 BTB domain containing 3 2 2
MIRT660697 AMOTL2 angiomotin like 2 2 2
MIRT660763 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT660884 ADCYAP1R1 ADCYAP receptor type I 2 2
MIRT660956 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT661217 SCIMP SLP adaptor and CSK interacting membrane protein 2 2
MIRT661596 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661624 UGT2B28 UDP glucuronosyltransferase family 2 member B28 2 2
MIRT662430 EID2 EP300 interacting inhibitor of differentiation 2 2 2
MIRT664816 NOX5 NADPH oxidase 5 2 2
MIRT665548 UCHL5 ubiquitin C-terminal hydrolase L5 2 2
MIRT665815 TMEM161B transmembrane protein 161B 2 2
MIRT666668 RBM23 RNA binding motif protein 23 2 2
MIRT667995 HCFC2 host cell factor C2 2 2
MIRT668064 GPR180 G protein-coupled receptor 180 2 2
MIRT669056 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 2
MIRT669637 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT699368 SLC30A6 solute carrier family 30 member 6 2 2
MIRT699882 RUNX1 runt related transcription factor 1 2 2
MIRT703834 ETV3 ETS variant 3 2 2
MIRT708528 ZNF177 zinc finger protein 177 2 2
MIRT709696 DMWD DM1 locus, WD repeat containing 2 2
MIRT710381 PARD6G par-6 family cell polarity regulator gamma 2 2
MIRT710639 GLUL glutamate-ammonia ligase 2 2
MIRT711584 SETD1A SET domain containing 1A 2 2
MIRT713208 FAM13A family with sequence similarity 13 member A 2 2
MIRT714129 IL20RB interleukin 20 receptor subunit beta 2 2
MIRT714204 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT714733 CCNO cyclin O 2 2
MIRT714761 ZNF462 zinc finger protein 462 2 2
MIRT715624 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT715755 SKA2 spindle and kinetochore associated complex subunit 2 2 2
MIRT716075 RNF150 ring finger protein 150 2 2
MIRT716179 MTRNR2L1 MT-RNR2-like 1 2 2
MIRT717450 RWDD2A RWD domain containing 2A 2 2
MIRT717866 CACNA2D1 calcium voltage-gated channel auxiliary subunit alpha2delta 1 2 2
MIRT720964 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT721564 SLC5A12 solute carrier family 5 member 12 2 2
MIRT722348 BAG2 BCL2 associated athanogene 2 2 2
MIRT723235 BTLA B and T lymphocyte associated 2 2
MIRT724018 LMBRD2 LMBR1 domain containing 2 2 2
MIRT724507 KLHL5 kelch like family member 5 2 2
MIRT725478 GPR26 G protein-coupled receptor 26 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4446 Aed Therapy sensitive High Epilepsy tissue
hsa-mir-4446 Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-4446 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-4446 Tamoxifen 2733525 NSC180973 approved resistant cell line (MCF7)
hsa-mir-4446 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-mir-4446 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-4446-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-4446-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4446-5p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-4446-5p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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