pre-miRNA Information
pre-miRNA hsa-mir-6871   
Genomic Coordinates chr20: 41169023 - 41169078
Description Homo sapiens miR-6871 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6871-3p
Sequence 35| CAGCACCCUGUGGCUCCCACAG |56
Evidence Experimental
Experiments Meta-analysis
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN16670239 4 COSMIC
COSN1872096 9 COSMIC
COSM1741616 16 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs545076040 1 dbSNP
rs1273348199 2 dbSNP
rs1202373059 5 dbSNP
rs1340707970 7 dbSNP
rs372994756 8 dbSNP
rs869070782 15 dbSNP
rs931272568 16 dbSNP
rs1333765165 18 dbSNP
Putative Targets

Gene Information
Gene Symbol SLC26A9   
Synonyms -
Description solute carrier family 26 member 9
Transcript NM_052934   
Other Transcripts NM_134325   
Expression
Putative miRNA Targets on SLC26A9
3'UTR of SLC26A9
(miRNA target sites are highlighted)
>SLC26A9|NM_052934|3'UTR
   1 GGGCTCAGCCAGTCCTCATGCTGCCTACAGAGTGCCTGGCACTTGGGACTTCCATAAAGGATGAGCCTGGGGTCACAGGG
  81 GGTGTCGGGCGGAGGAAAGTGCATCCCCCAGAGCTTGGGTTCCTCTCTCCTCTCCCCCTCTCTCCTCCCTTCCTTCCCTC
 161 CCCGCATCTCCAGAGAGAGCCTCTCAGCAGCAGGGGGGTGCTACCCTTACAGGAGTGAGAGTCTGGTGAGCCCACTCTTC
 241 ACCCGTCAGGCCCTGGCCGCAATGGACAAGCCTCCTGCTCACTCCACCCCACCCACCTCTGCCCTGTCCTTGGCAGCTGA
 321 AGGACACCTTGACTTCCAGCTTTTACGAGTGAGCCAAAAACAGAAGGACAAGTACAACTGTGCTGGCCTGCTGTACAAGC
 401 TTCAAAAAGTGTCCCAGAGCCCACACGGCTCGGTGTCAGATGGTGTCAGGCTGTCACGGACATAGGGATAAACTTGGTTA
 481 GGACTCTGGCTTGCCTTCCCCAGCTGCCTCAACTCTGTCTCTGGCAGCTCTGCACCCAGGGACCATGTGCTCTCCACACC
 561 CAGGAGTCTAGGCCTTGGTAACTATGCGCCCCCCCTCCATCATCCCCAAGGCTGCCCAAACCACCACTGCTGTCAGCAAG
 641 CACATCAGACTCTAGCCTGGACAGTGGCCAGGACCGTCGAGACCACCAGAGCTACCTCCCCGGGGACAGCCCACTAAGGT
 721 TCTGCCTCAGCCTCCTGAAACATCACTGCCCTCAGAGGCTGCTCCCTTCCCCTGGAGGCTGGCTAGAAACCCCAAAGAGG
 801 GGGATGGGTAGCTGGCAGAATCATCTGGCATCCTAGTAATAGATACCAGTTATTCTGCACAAAACTTTTGGGAATTCCTC
 881 TTTGCACCCAGAGACTCAGAGGGGAAGAGGGTGCTAGTACCAACACAGGGAAAACGGATGGGACCTGGGCCCAGACAGTC
 961 CCCCTTGACCCCAGGGCCCATCAGGGAAATGCCTCCCTTTGGTAAATCTGCCTTATCCTTCTTTACCTGGCAAAGAGCCA
1041 ATCATGTTAACTCTTCCTTATCAGCCTGTGGCCCAGAGACACAATGGGGTCCTTCTGTAGGCAAAGGTGGAAGTCCTCCA
1121 GGGATCCGCTACATCCCCTAACTGCATGCAGATGTGGAAAGGGGCTGATCCAGATTGGGTCTTCCTGCACAGGAAGACTC
1201 TTTAACACCCTTAGGACCTCAGGCCATCTTCTCCTATGAAGATGAAAATAGGGGTTAAGTTTTCCATATGTACAAGGAGG
1281 TATTGAGAGGAACCCTACTGTTGACTTGAAAATAAATAGGTTCCATGTGTAAGTGTTTTGTAAAATTTCAGTGGAAATGC
1361 ACAGAAAATCTTCTGGCCTCTCATCACTGCTTTTCTCAAGCTTCTTCAGCTTAACAACCCCTTCCCTAACAGGTTGGGCT
1441 GGCCCAGCCTAGGAAAACATCCCCATTTCTAACTTCAGCCAGACCTGCGTTGTGTGTCTGTGTGTTGAGTGAGCTGGTCA
1521 GCTAACAAGTCTTCTTAGAGTTAAAGGAGGGGGTGCTGGCCAAGAGCCAACACATTCTTGGCCCAGGAGCATTGCTTTTC
1601 TGTGAATTCATTATGCCATCTGGCTGCCAATGGAACTCAAAACTTGGAAGGCGAAGGACAATGTTATCTGGGATTCACCG
1681 TGCCCAGCACCCGAAGTGCCAAATTCCAGGAGGACAAGAGCCTTAGCCAATGACAACTCACTCTCCCCTACTCCACCTCC
1761 TTCCAAGTCCAGCTCAGGCCCAGGAGGTGGGAGAAGGTCACAGAGCCTCAGGAATTTCCAAGTCAGAGTCCCCTTTGAAC
1841 CAAGTATCTAGATCCCCTGAGGACTTGATGAAGTGATCCTTAACCCCCAAGTAATCATTAACCCCCAGACCAGCCTCAGA
1921 ACTGAAGGAGATTGTTGACCCAGTGACCTGGAGTTGAGGCTCAGGGAGAGATCTGCCACATGTCTGAGGGTTGCAGAGCC
2001 CGCTGTGGAGGTAAGATTGGAAACACATGAGGCAGAGGGAAGACATTGAAGAAAACATCTCTGCTGGAATATTTGGAAAA
2081 GAACACTCTTCTGGACCTGGTTGAAGCAGGAAAGATGGAGGCAAAGTAGTGAAATAATCCAGAATTTCAATGCTTTTGAA
2161 TGTTCTTAGTGATACTGACCTGTGATAATATAATTCCCAGGGAGGACTGGGAACCTTATCTCTTGAGATATTTGCATAAT
2241 TTATTTAATTTAAGCCTCATTCTCCTTTTGTTCATTTTGGTAATAAACTGGATTTGAATTGTGAACAAAAAAAAAAAAAA
2321 AAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gacaCCCUCGGUGUCCCACGAc 5'
              ||||   | |||||||| 
Target 5' agagGGGA---AGAGGGTGCTa 3'
898 - 916 155.00 -19.50
2
miRNA  3' gacacCCUCGGUGUCCCACGAc 5'
               | ||| : :||||||| 
Target 5' tctcaGCAGCAGGGGGGTGCTa 3'
182 - 203 153.00 -15.30
3
miRNA  3' gacaccCUCGGUGU-----CCCACGAc 5'
                |||::| |     ||||||| 
Target 5' ttcttaGAGTTAAAGGAGGGGGTGCTg 3'
1532 - 1558 148.00 -20.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
403451 211 ClinVar
403450 423 ClinVar
COSN30193885 17 COSMIC
COSN31613918 66 COSMIC
COSN31554295 78 COSMIC
COSN30149021 87 COSMIC
COSN30532279 87 COSMIC
COSN30520509 91 COSMIC
COSN8637362 92 COSMIC
COSN1096658 100 COSMIC
COSN30755523 100 COSMIC
COSN31511513 113 COSMIC
COSN30121291 120 COSMIC
COSN30449108 122 COSMIC
COSN30459223 129 COSMIC
COSN30459165 130 COSMIC
COSN31492170 131 COSMIC
COSN28889028 132 COSMIC
COSN30487300 152 COSMIC
COSM2215559 172 COSMIC
COSM6019668 173 COSMIC
COSM902849 175 COSMIC
COSM8705743 181 COSMIC
COSM2215558 192 COSMIC
COSM4449463 193 COSMIC
COSM8685424 194 COSMIC
COSM4537230 196 COSMIC
COSM4963040 196 COSMIC
COSM5539120 197 COSMIC
COSM5904702 211 COSMIC
COSM9398774 213 COSMIC
COSM8184768 219 COSMIC
COSM8190845 231 COSMIC
COSM9229642 244 COSMIC
COSM1165394 245 COSMIC
COSM3482308 253 COSMIC
COSM6902118 275 COSMIC
COSM220039 289 COSMIC
COSM7965648 309 COSMIC
COSM5634852 317 COSMIC
COSM7911471 323 COSMIC
COSM8169759 331 COSMIC
COSM4481736 340 COSMIC
COSM1689722 341 COSMIC
COSM5566944 346 COSMIC
COSM7765300 346 COSMIC
COSM4767893 347 COSMIC
COSM4896488 354 COSMIC
COSM4932172 394 COSMIC
COSM3803630 403 COSMIC
COSM1338242 413 COSMIC
COSM3482307 421 COSMIC
COSM9212178 424 COSMIC
COSM6445377 426 COSMIC
COSM3864265 431 COSMIC
COSM4143265 456 COSMIC
COSM8143644 459 COSMIC
COSN32056184 482 COSMIC
COSN30188037 493 COSMIC
COSN30492193 525 COSMIC
COSN30508499 527 COSMIC
COSN30459976 540 COSMIC
COSN30468797 555 COSMIC
COSN18714324 568 COSMIC
COSN20074007 587 COSMIC
COSN13510962 588 COSMIC
COSN30495732 594 COSMIC
COSN28682859 595 COSMIC
COSN20074083 617 COSMIC
COSN31522032 633 COSMIC
COSN31569078 679 COSMIC
COSN31536773 772 COSMIC
COSN32064995 1027 COSMIC
COSN15896335 1131 COSMIC
COSN26309671 1319 COSMIC
COSN31532610 1507 COSMIC
COSN26492653 1615 COSMIC
COSN28709426 1619 COSMIC
COSN28802462 2031 COSMIC
COSN32083713 2158 COSMIC
COSN23381805 2180 COSMIC
COSN25769926 2249 COSMIC
COSN17394216 2279 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs745908845 4 dbSNP
rs1190993329 6 dbSNP
rs370215212 15 dbSNP
rs757460765 18 dbSNP
rs751711062 19 dbSNP
rs750836260 21 dbSNP
rs1262122967 23 dbSNP
rs754714018 24 dbSNP
rs753841955 27 dbSNP
rs1250107221 29 dbSNP
rs766194594 31 dbSNP
rs760280392 32 dbSNP
rs749885896 33 dbSNP
rs767343779 37 dbSNP
rs761562901 38 dbSNP
rs376570982 39 dbSNP
rs866787497 40 dbSNP
rs371663206 43 dbSNP
rs972347329 46 dbSNP
rs763370730 48 dbSNP
rs1167439692 52 dbSNP
rs569130255 53 dbSNP
rs770184136 56 dbSNP
rs746021108 59 dbSNP
rs1442613812 60 dbSNP
rs781130205 63 dbSNP
rs768072289 65 dbSNP
rs181859469 66 dbSNP
rs777928390 69 dbSNP
rs529528671 70 dbSNP
rs753553761 71 dbSNP
rs780098030 72 dbSNP
rs1244231657 73 dbSNP
rs1359249065 76 dbSNP
rs755999505 77 dbSNP
rs1450416235 78 dbSNP
rs960935963 79 dbSNP
rs957673467 80 dbSNP
rs750307759 81 dbSNP
rs1178299814 82 dbSNP
rs555049666 83 dbSNP
rs753183045 84 dbSNP
rs767149621 85 dbSNP
rs553760871 86 dbSNP
rs763810662 87 dbSNP
rs376627076 90 dbSNP
rs527425381 91 dbSNP
rs759970587 94 dbSNP
rs1352569642 100 dbSNP
rs564999525 101 dbSNP
rs777070023 106 dbSNP
rs887192482 107 dbSNP
rs1372310171 110 dbSNP
rs1448374512 110 dbSNP
rs377312566 112 dbSNP
rs747057894 114 dbSNP
rs1340527609 115 dbSNP
rs1368307082 118 dbSNP
rs778017076 125 dbSNP
rs1290971983 127 dbSNP
rs1335291070 127 dbSNP
rs1221164359 128 dbSNP
rs1230398924 129 dbSNP
rs772266742 130 dbSNP
rs1279259215 131 dbSNP
rs1293635273 132 dbSNP
rs71633571 135 dbSNP
rs894457133 136 dbSNP
rs369057392 138 dbSNP
rs998755249 145 dbSNP
rs1309739708 147 dbSNP
rs1489998770 148 dbSNP
rs145436983 149 dbSNP
rs755881098 160 dbSNP
rs1323902446 161 dbSNP
rs1478041937 162 dbSNP
rs200279790 163 dbSNP
rs376875270 164 dbSNP
rs1157697462 167 dbSNP
rs751094984 168 dbSNP
rs888870379 173 dbSNP
rs1413475845 175 dbSNP
rs763900415 176 dbSNP
rs573958311 177 dbSNP
rs752330682 179 dbSNP
rs767788275 180 dbSNP
rs1224231115 186 dbSNP
rs9438400 190 dbSNP
rs1325544609 191 dbSNP
rs777160066 193 dbSNP
rs766846418 194 dbSNP
rs760800844 195 dbSNP
rs773274241 196 dbSNP
rs1251223237 197 dbSNP
rs772122749 198 dbSNP
rs759846262 199 dbSNP
rs774024428 199 dbSNP
rs1222998369 202 dbSNP
rs200314801 203 dbSNP
rs754464518 205 dbSNP
rs769507901 206 dbSNP
rs745629694 208 dbSNP
rs190603801 210 dbSNP
rs6669481 211 dbSNP
rs1390397553 215 dbSNP
rs1173542270 216 dbSNP
rs746589212 217 dbSNP
rs368293592 218 dbSNP
rs1193476035 226 dbSNP
rs757873633 230 dbSNP
rs752319817 231 dbSNP
rs764909473 232 dbSNP
rs145622737 233 dbSNP
rs548847598 235 dbSNP
rs1391795241 237 dbSNP
rs754187839 240 dbSNP
rs571310113 244 dbSNP
rs373591316 245 dbSNP
rs1192662426 248 dbSNP
rs558255720 249 dbSNP
rs767516646 251 dbSNP
rs761913221 252 dbSNP
rs147543239 258 dbSNP
rs34309781 259 dbSNP
rs1435546405 260 dbSNP
rs1366907506 261 dbSNP
rs776566196 262 dbSNP
rs370198353 266 dbSNP
rs1359275436 267 dbSNP
rs772030542 270 dbSNP
rs777722709 271 dbSNP
rs375889350 274 dbSNP
rs1452335304 277 dbSNP
rs1169547841 279 dbSNP
rs747669354 282 dbSNP
rs145480445 283 dbSNP
rs754653919 284 dbSNP
rs1483603139 286 dbSNP
rs753420797 289 dbSNP
rs1302717262 290 dbSNP
rs770543770 291 dbSNP
rs138751886 292 dbSNP
rs756421420 293 dbSNP
rs762502181 295 dbSNP
rs140700535 296 dbSNP
rs9438399 297 dbSNP
rs761850332 301 dbSNP
rs1007880979 303 dbSNP
rs373951424 308 dbSNP
rs764293820 311 dbSNP
rs763276284 313 dbSNP
rs1355465944 323 dbSNP
rs995614238 324 dbSNP
rs754797573 327 dbSNP
rs1331519783 328 dbSNP
rs370874983 331 dbSNP
rs1413233835 333 dbSNP
rs529589572 334 dbSNP
rs147712135 346 dbSNP
rs140760240 347 dbSNP
rs1161699753 350 dbSNP
rs376730677 351 dbSNP
rs772030423 353 dbSNP
rs1335275487 354 dbSNP
rs77672580 356 dbSNP
rs938657656 362 dbSNP
rs747677019 364 dbSNP
rs146460524 367 dbSNP
rs1205832714 369 dbSNP
rs1396437062 377 dbSNP
rs768096078 379 dbSNP
rs1289260819 380 dbSNP
rs748961360 382 dbSNP
rs779643232 383 dbSNP
rs756511491 388 dbSNP
rs1221560567 390 dbSNP
rs750780449 391 dbSNP
rs1289494241 396 dbSNP
rs781609174 397 dbSNP
rs757781750 398 dbSNP
rs772587110 399 dbSNP
rs1458795443 405 dbSNP
rs377735995 406 dbSNP
rs1157255644 407 dbSNP
rs35639313 409 dbSNP
rs764252470 411 dbSNP
rs149852895 416 dbSNP
rs536446020 423 dbSNP
rs9438438 423 dbSNP
rs753004152 426 dbSNP
rs186447801 427 dbSNP
rs914767583 431 dbSNP
rs138723623 432 dbSNP
rs773052977 434 dbSNP
rs771696774 435 dbSNP
rs1206483850 440 dbSNP
rs761821476 443 dbSNP
rs774105878 445 dbSNP
rs16856448 446 dbSNP
rs1344165597 450 dbSNP
rs1301251556 451 dbSNP
rs1404822558 452 dbSNP
rs373065438 457 dbSNP
rs769424823 458 dbSNP
rs1287517754 459 dbSNP
rs1374559098 462 dbSNP
rs1281595299 465 dbSNP
rs975485785 466 dbSNP
rs1456865883 467 dbSNP
rs746286542 473 dbSNP
rs201167041 477 dbSNP
rs1019960832 480 dbSNP
rs201757545 482 dbSNP
rs1375847480 492 dbSNP
rs1198138837 493 dbSNP
rs202136464 495 dbSNP
rs778390308 497 dbSNP
rs982670074 498 dbSNP
rs867753037 500 dbSNP
rs951258259 501 dbSNP
rs371649750 502 dbSNP
rs369581504 506 dbSNP
rs990023540 509 dbSNP
rs765619255 510 dbSNP
rs199950091 512 dbSNP
rs959081992 519 dbSNP
rs1207134424 520 dbSNP
rs573640097 524 dbSNP
rs1294363906 529 dbSNP
rs560467144 531 dbSNP
rs976727524 538 dbSNP
rs144060411 540 dbSNP
rs1300188610 549 dbSNP
rs1003300017 557 dbSNP
rs907177753 560 dbSNP
rs965382867 564 dbSNP
rs1041682638 567 dbSNP
rs71568074 582 dbSNP
rs568569866 583 dbSNP
rs1432173038 586 dbSNP
rs1172281672 587 dbSNP
rs1010476098 588 dbSNP
rs577783790 590 dbSNP
rs557653507 591 dbSNP
rs1332452202 592 dbSNP
rs893383834 593 dbSNP
rs367980630 594 dbSNP
rs11240589 595 dbSNP
rs113120833 596 dbSNP
rs1269806479 596 dbSNP
rs961799862 596 dbSNP
rs557217837 597 dbSNP
rs865912665 601 dbSNP
rs555380969 603 dbSNP
rs1162269317 608 dbSNP
rs1368378552 624 dbSNP
rs1457023898 625 dbSNP
rs1212085511 635 dbSNP
rs1039425980 640 dbSNP
rs1312570751 643 dbSNP
rs1392180651 644 dbSNP
rs1045114103 648 dbSNP
rs113680114 652 dbSNP
rs1212580675 653 dbSNP
rs1312891213 662 dbSNP
rs912250993 672 dbSNP
rs982431075 674 dbSNP
rs951310777 675 dbSNP
rs894023419 676 dbSNP
rs139679145 678 dbSNP
rs546910887 679 dbSNP
rs1208369393 684 dbSNP
rs973910204 687 dbSNP
rs6677458 692 dbSNP
rs1041150833 693 dbSNP
rs944107381 696 dbSNP
rs567755500 701 dbSNP
rs985841473 702 dbSNP
rs76988577 705 dbSNP
rs971876877 709 dbSNP
rs1158012096 710 dbSNP
rs973310238 711 dbSNP
rs775792145 712 dbSNP
rs1300858818 713 dbSNP
rs1425375326 715 dbSNP
rs1020278176 719 dbSNP
rs1314717201 724 dbSNP
rs1003325631 729 dbSNP
rs1227839579 730 dbSNP
rs1289284039 733 dbSNP
rs531479132 751 dbSNP
rs562583113 758 dbSNP
rs1201934277 762 dbSNP
rs1010193145 766 dbSNP
rs1255788421 770 dbSNP
rs1483756586 780 dbSNP
rs1248999288 784 dbSNP
rs1471350111 792 dbSNP
rs1180803430 793 dbSNP
rs893395044 795 dbSNP
rs1412337067 799 dbSNP
rs970857040 812 dbSNP
rs1173445750 818 dbSNP
rs1183529528 822 dbSNP
rs36081371 837 dbSNP
rs996759313 842 dbSNP
rs894063803 845 dbSNP
rs900643948 846 dbSNP
rs1409361532 853 dbSNP
rs1053997901 855 dbSNP
rs1319701745 871 dbSNP
rs1217714454 875 dbSNP
rs1300805580 891 dbSNP
rs1313197863 893 dbSNP
rs759730955 895 dbSNP
rs1260272352 901 dbSNP
rs868641972 902 dbSNP
rs1219428757 918 dbSNP
rs999729281 925 dbSNP
rs1483011304 931 dbSNP
rs902711900 935 dbSNP
rs1040922729 936 dbSNP
rs943831156 942 dbSNP
rs912289053 946 dbSNP
rs547759917 954 dbSNP
rs1189129300 959 dbSNP
rs1041182106 971 dbSNP
rs773972661 972 dbSNP
rs528920916 975 dbSNP
rs749914247 980 dbSNP
rs527955223 984 dbSNP
rs770954694 993 dbSNP
rs919936529 994 dbSNP
rs1170959305 996 dbSNP
rs973962457 1012 dbSNP
rs571868974 1022 dbSNP
rs961944356 1024 dbSNP
rs540555303 1029 dbSNP
rs927177868 1035 dbSNP
rs981676400 1038 dbSNP
rs1295860400 1039 dbSNP
rs971546141 1049 dbSNP
rs1229813567 1051 dbSNP
rs907724470 1052 dbSNP
rs1020289605 1053 dbSNP
rs970503502 1058 dbSNP
rs1245837782 1062 dbSNP
rs1023770207 1065 dbSNP
rs1245989647 1084 dbSNP
rs577837899 1085 dbSNP
rs16856447 1094 dbSNP
rs1391928868 1102 dbSNP
rs1403730625 1119 dbSNP
rs774292413 1124 dbSNP
rs748861732 1127 dbSNP
rs1199516227 1128 dbSNP
rs1318727564 1130 dbSNP
rs1364963158 1131 dbSNP
rs1436238383 1132 dbSNP
rs996464080 1135 dbSNP
rs544067085 1139 dbSNP
rs1377617734 1147 dbSNP
rs902744467 1148 dbSNP
rs1288544933 1154 dbSNP
rs900735999 1161 dbSNP
rs35843105 1162 dbSNP
rs1263891206 1164 dbSNP
rs1265817800 1165 dbSNP
rs1464315696 1166 dbSNP
rs1247131233 1167 dbSNP
rs1188957671 1173 dbSNP
rs1249890267 1178 dbSNP
rs1008779179 1179 dbSNP
rs749085376 1182 dbSNP
rs1414652398 1187 dbSNP
rs77367497 1188 dbSNP
rs1157266592 1190 dbSNP
rs1238530606 1193 dbSNP
rs890881750 1199 dbSNP
rs931397475 1200 dbSNP
rs1332541181 1211 dbSNP
rs755769677 1214 dbSNP
rs1447974679 1218 dbSNP
rs1285263823 1220 dbSNP
rs1379318471 1223 dbSNP
rs929646432 1225 dbSNP
rs940608992 1226 dbSNP
rs907752102 1228 dbSNP
rs981947272 1229 dbSNP
rs187983581 1233 dbSNP
rs1457999207 1243 dbSNP
rs148797617 1249 dbSNP
rs1237952971 1253 dbSNP
rs745547147 1254 dbSNP
rs1441398673 1261 dbSNP
rs927201771 1265 dbSNP
rs1031980693 1269 dbSNP
rs981302858 1270 dbSNP
rs1414234052 1274 dbSNP
rs183668001 1278 dbSNP
rs540152876 1280 dbSNP
rs780715459 1285 dbSNP
rs1416167923 1308 dbSNP
rs1466955968 1320 dbSNP
rs571051676 1333 dbSNP
rs115873961 1334 dbSNP
rs1211807030 1337 dbSNP
rs1280884502 1340 dbSNP
rs1488853978 1354 dbSNP
rs1260147568 1359 dbSNP
rs889976601 1360 dbSNP
rs537252228 1362 dbSNP
rs1356538823 1364 dbSNP
rs1486608751 1367 dbSNP
rs1310599847 1379 dbSNP
rs1028479305 1383 dbSNP
rs1483401064 1397 dbSNP
rs1329673257 1408 dbSNP
rs568644509 1411 dbSNP
rs988830342 1415 dbSNP
rs1376112084 1419 dbSNP
rs1477941436 1421 dbSNP
rs1302984866 1427 dbSNP
rs996011195 1434 dbSNP
rs957432547 1437 dbSNP
rs1033000484 1442 dbSNP
rs1383629607 1443 dbSNP
rs191562509 1465 dbSNP
rs965028968 1469 dbSNP
rs1369432175 1477 dbSNP
rs1037040640 1488 dbSNP
rs528982953 1489 dbSNP
rs1019576340 1492 dbSNP
rs907192662 1495 dbSNP
rs1046783480 1499 dbSNP
rs1349725709 1511 dbSNP
rs1226131330 1515 dbSNP
rs1273790333 1518 dbSNP
rs1343022056 1527 dbSNP
rs1197612948 1541 dbSNP
rs1265611925 1542 dbSNP
rs566502254 1549 dbSNP
rs1199783786 1550 dbSNP
rs1255314734 1551 dbSNP
rs546276950 1552 dbSNP
rs1448005859 1553 dbSNP
rs559983214 1573 dbSNP
rs1391302654 1575 dbSNP
rs1462103245 1586 dbSNP
rs1169140266 1595 dbSNP
rs1379091891 1597 dbSNP
rs1387868878 1603 dbSNP
rs144203873 1604 dbSNP
rs1323760878 1608 dbSNP
rs1372961079 1609 dbSNP
rs1432605909 1610 dbSNP
rs1296856714 1614 dbSNP
rs1365829989 1615 dbSNP
rs1229428455 1616 dbSNP
rs1263777359 1616 dbSNP
rs916427660 1617 dbSNP
rs564232640 1618 dbSNP
rs1054937127 1620 dbSNP
rs752050335 1635 dbSNP
rs1434049295 1636 dbSNP
rs936436215 1643 dbSNP
rs764705694 1651 dbSNP
rs542478097 1652 dbSNP
rs1026466308 1653 dbSNP
rs1430814320 1654 dbSNP
rs745308811 1661 dbSNP
rs1489293856 1668 dbSNP
rs993948500 1679 dbSNP
rs898241347 1680 dbSNP
rs12733647 1684 dbSNP
rs1455502379 1692 dbSNP
rs912212409 1693 dbSNP
rs1385324443 1707 dbSNP
rs765741903 1711 dbSNP
rs1383879073 1713 dbSNP
rs936964837 1716 dbSNP
rs987489405 1720 dbSNP
rs905791364 1724 dbSNP
rs954293993 1726 dbSNP
rs1046034024 1735 dbSNP
rs949903432 1737 dbSNP
rs1295411734 1743 dbSNP
rs1327336345 1751 dbSNP
rs1028930003 1752 dbSNP
rs561510355 1754 dbSNP
rs995652721 1757 dbSNP
rs866871055 1759 dbSNP
rs962793319 1760 dbSNP
rs1199283264 1766 dbSNP
rs1256039392 1775 dbSNP
rs913088165 1777 dbSNP
rs759769051 1780 dbSNP
rs189687708 1783 dbSNP
rs1052869858 1784 dbSNP
rs1419301452 1785 dbSNP
rs936120305 1791 dbSNP
rs926036484 1794 dbSNP
rs1401352982 1797 dbSNP
rs1205730017 1798 dbSNP
rs1340541220 1803 dbSNP
rs866268791 1812 dbSNP
rs974772610 1815 dbSNP
rs965036528 1816 dbSNP
rs907225290 1822 dbSNP
rs749570676 1823 dbSNP
rs1415546208 1826 dbSNP
rs1045718150 1833 dbSNP
rs1013933449 1834 dbSNP
rs1228048074 1837 dbSNP
rs867547632 1853 dbSNP
rs895038843 1854 dbSNP
rs1173004003 1856 dbSNP
rs754035704 1859 dbSNP
rs373828594 1863 dbSNP
rs1055369560 1864 dbSNP
rs1461275410 1866 dbSNP
rs1259027745 1867 dbSNP
rs925115191 1869 dbSNP
rs1420718221 1874 dbSNP
rs757789202 1878 dbSNP
rs1376791318 1887 dbSNP
rs1435279007 1889 dbSNP
rs541563495 1897 dbSNP
rs945114325 1901 dbSNP
rs912226525 1902 dbSNP
rs986457999 1905 dbSNP
rs988153152 1907 dbSNP
rs954441422 1910 dbSNP
rs921489079 1933 dbSNP
rs1301030008 1934 dbSNP
rs149566398 1948 dbSNP
rs1237191751 1950 dbSNP
rs1273073393 1956 dbSNP
rs1026519915 1958 dbSNP
rs1203797183 1960 dbSNP
rs995003622 1965 dbSNP
rs1263925475 1969 dbSNP
rs747546221 1970 dbSNP
rs78944112 1977 dbSNP
rs1266434592 1979 dbSNP
rs1017063971 1980 dbSNP
rs1195476524 1981 dbSNP
rs1388231796 1986 dbSNP
rs545866090 1988 dbSNP
rs1001224493 2001 dbSNP
rs768574946 2002 dbSNP
rs1012881427 2004 dbSNP
rs1293115127 2005 dbSNP
rs1201438986 2007 dbSNP
rs1339108434 2010 dbSNP
rs1443542741 2015 dbSNP
rs894458706 2017 dbSNP
rs1365097969 2018 dbSNP
rs79757645 2028 dbSNP
rs2282430 2031 dbSNP
rs775234294 2037 dbSNP
rs1218968539 2040 dbSNP
rs903724103 2046 dbSNP
rs1468793938 2048 dbSNP
rs1220026104 2049 dbSNP
rs1042173036 2051 dbSNP
rs1245893744 2056 dbSNP
rs891704074 2058 dbSNP
rs890839507 2067 dbSNP
rs1422104586 2069 dbSNP
rs557392768 2085 dbSNP
rs1051208007 2088 dbSNP
rs935796380 2090 dbSNP
rs1221263164 2095 dbSNP
rs1463408641 2101 dbSNP
rs1342244316 2109 dbSNP
rs932371326 2110 dbSNP
rs926067205 2119 dbSNP
rs1334703359 2135 dbSNP
rs537718972 2138 dbSNP
rs1251547145 2142 dbSNP
rs1397789059 2145 dbSNP
rs1168816685 2147 dbSNP
rs1363514814 2150 dbSNP
rs769509926 2162 dbSNP
rs943449623 2166 dbSNP
rs1424603281 2168 dbSNP
rs372453576 2203 dbSNP
rs911909832 2206 dbSNP
rs371535344 2211 dbSNP
rs1239765835 2214 dbSNP
rs950984123 2214 dbSNP
rs139290825 2239 dbSNP
rs1188809225 2243 dbSNP
rs1243756498 2250 dbSNP
rs574746808 2253 dbSNP
rs973578188 2254 dbSNP
rs1457608511 2258 dbSNP
rs553294230 2267 dbSNP
rs1181351045 2282 dbSNP
rs1418585053 2285 dbSNP
rs1476318023 2286 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gacacCCUCGGUGUCCCACGAc 5'
               ||||    :||||||| 
Target 5' -uaaaGGAG----GGGGUGCUg 3'
1 - 17
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000367135.3 | 3UTR | UAAAGGAGGGGGUGCUGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
88 hsa-miR-6871-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061678 BTG2 BTG anti-proliferation factor 2 2 4
MIRT116181 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT150139 MIDN midnolin 2 2
MIRT197058 NKIRAS2 NFKB inhibitor interacting Ras like 2 2 2
MIRT225108 GOLGA7 golgin A7 2 2
MIRT376288 CALM3 calmodulin 3 2 2
MIRT454810 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT464228 VEGFA vascular endothelial growth factor A 2 6
MIRT466961 STAT3 signal transducer and activator of transcription 3 2 2
MIRT468219 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT472460 NASP nuclear autoantigenic sperm protein 2 2
MIRT474203 LEPRE1 prolyl 3-hydroxylase 1 1 1
MIRT475836 HDGF heparin binding growth factor 2 4
MIRT478667 CTC1 CST telomere replication complex component 1 2 14
MIRT478707 CSRNP2 cysteine and serine rich nuclear protein 2 2 2
MIRT478982 COMMD2 COMM domain containing 2 2 2
MIRT479693 CCNT2 cyclin T2 2 6
MIRT488440 ULBP2 UL16 binding protein 2 2 2
MIRT492511 RAET1L retinoic acid early transcript 1L 2 2
MIRT492975 NCS1 neuronal calcium sensor 1 2 2
MIRT494158 COL4A1 collagen type IV alpha 1 chain 2 6
MIRT495934 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT496210 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT496356 PPY pancreatic polypeptide 2 2
MIRT496385 ZC3H6 zinc finger CCCH-type containing 6 2 2
MIRT496463 DCTN5 dynactin subunit 5 2 2
MIRT497642 GLDN gliomedin 2 2
MIRT498496 FRK fyn related Src family tyrosine kinase 2 2
MIRT501928 MCL1 MCL1, BCL2 family apoptosis regulator 2 8
MIRT513286 PDPK1 3-phosphoinositide dependent protein kinase 1 2 2
MIRT514767 RBM4B RNA binding motif protein 4B 2 2
MIRT514916 MDM2 MDM2 proto-oncogene 2 6
MIRT515669 LRRC27 leucine rich repeat containing 27 2 2
MIRT520367 UBE2G2 ubiquitin conjugating enzyme E2 G2 2 2
MIRT523960 DYNLT1 dynein light chain Tctex-type 1 2 4
MIRT526859 KIFC1 kinesin family member C1 2 2
MIRT527673 CASP8 caspase 8 2 2
MIRT527828 TMEM74B transmembrane protein 74B 2 2
MIRT529553 EI24 EI24, autophagy associated transmembrane protein 2 2
MIRT530547 SYNPO synaptopodin 2 2
MIRT531725 TARS threonyl-tRNA synthetase 2 2
MIRT533340 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT533620 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT537226 GAN gigaxonin 2 2
MIRT544430 ZNF460 zinc finger protein 460 2 4
MIRT546905 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT547102 PLAG1 PLAG1 zinc finger 2 2
MIRT547820 ISG20L2 interferon stimulated exonuclease gene 20 like 2 2 2
MIRT548236 FEM1B fem-1 homolog B 2 2
MIRT550034 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT554337 SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 2 4
MIRT565483 SPRTN SprT-like N-terminal domain 2 2
MIRT568200 CBX6 chromobox 6 2 2
MIRT569754 C2orf71 chromosome 2 open reading frame 71 2 2
MIRT571369 ZNF45 zinc finger protein 45 2 2
MIRT609886 CLASP1 cytoplasmic linker associated protein 1 2 4
MIRT640543 C3orf36 chromosome 3 open reading frame 36 2 2
MIRT640885 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT643494 LRCH3 leucine rich repeats and calponin homology domain containing 3 2 2
MIRT643627 YY2 YY2 transcription factor 2 2
MIRT644384 ZNF286A zinc finger protein 286A 2 2
MIRT646126 SLC26A9 solute carrier family 26 member 9 2 2
MIRT655939 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656057 MYLK4 myosin light chain kinase family member 4 2 2
MIRT658767 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT661583 EPHX2 epoxide hydrolase 2 2 2
MIRT664285 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT689391 ZNF850 zinc finger protein 850 2 2
MIRT694530 TRIM72 tripartite motif containing 72 2 2
MIRT694626 ZFPM1 zinc finger protein, FOG family member 1 2 2
MIRT695133 PRY2 PTPN13-like, Y-linked 2 2 2
MIRT695150 PRY PTPN13-like, Y-linked 2 2
MIRT697468 ZC3H4 zinc finger CCCH-type containing 4 2 2
MIRT701919 MLXIP MLX interacting protein 2 2
MIRT704548 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT704791 CDK6 cyclin dependent kinase 6 2 2
MIRT705696 ANKRD13A ankyrin repeat domain 13A 2 2
MIRT707992 OTUD4 OTU deubiquitinase 4 2 2
MIRT708739 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT713401 FAM179A TOG array regulator of axonemal microtubules 2 2 2
MIRT713846 FAM3D family with sequence similarity 3 member D 2 2
MIRT716998 ARL6IP4 ADP ribosylation factor like GTPase 6 interacting protein 4 2 2
MIRT718511 DIRAS1 DIRAS family GTPase 1 2 2
MIRT718698 BTBD9 BTB domain containing 9 2 2
MIRT719578 TYRO3 TYRO3 protein tyrosine kinase 2 2
MIRT720892 CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 2 2
MIRT722633 C8A complement C8 alpha chain 2 2
MIRT723333 DGAT1 diacylglycerol O-acyltransferase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6871-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6871-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6871-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6871-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)

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