pre-miRNA Information
pre-miRNA hsa-mir-640   
Genomic Coordinates chr19: 19435063 - 19435158
Synonyms MIRN640, hsa-mir-640, MIR640
Description Homo sapiens miR-640 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-640
Sequence 61| AUGAUCCAGGAACCUGCCUCU |81
Evidence Experimental
Experiments RT-PCR
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30153378 1 COSMIC
COSN23015356 12 COSMIC
COSN30513185 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs111726405 1 dbSNP
rs765622881 2 dbSNP
rs1249744889 6 dbSNP
rs752995186 12 dbSNP
rs758746736 13 dbSNP
rs918887970 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CCDC69   
Synonyms -
Description coiled-coil domain containing 69
Transcript NM_015621   
Expression
Putative miRNA Targets on CCDC69
3'UTR of CCDC69
(miRNA target sites are highlighted)
>CCDC69|NM_015621|3'UTR
   1 GGTGCAGGGCCTGGGCCCACCACGACGCCTGAAGTCACAGCTCCTTCCAAGGTTTTTCTGGAGAAGACAGCAGGAGCCTC
  81 TCAGTTCTTTTCCAGGAAGGAACGAGGGTGGGAGCGAGATGGAGATCCTGGGTGTGTGCCCAGTGAGCCCTGGGGCCTTG
 161 AGTTACATGGAATCACCCACAGGGTTTTGGAGGCCCCGAGAAGCGTCTTCCCTTGAGTTGGCCAAGGGAATAAGCAAGAG
 241 GAGACATTTCCTCCCTGCCCCAGCACTCTGTCCCAATCCGAGAAGTTCCGAGGCTTTCCCAGGGGCAGTCTGTGTCACGC
 321 TGGCCATTTGACATAAAGGAGACAGCCCCTGGTCCCAGCTTGTCAGCTCTGCTGCCGACTTGCTGACTTATCAACTTCCT
 401 CTAGGTGTTTCCACTCCACCCTGGCCTGCTCAGAGCCTCAGTTTACCCCTGCATTAAAATGGTGGGGGGACTGGTCAAAG
 481 GACTCTTATGTCACTGCAGTGTCCCATTCTAGGATTGTCTGAAGGCCAGAGTAGGGGTTGGGGGGAGTGTGGACAAACCC
 561 CGCAAATCAGAGTGGGGAAGGTGAGTGGTAGAGAGGGGGTCTCTGAAGGCCCTTGGGGCTGACAGGGCCAGGCAGCCTCC
 641 CCAGCTGAGGCATCATTCCTGGGCCAGAGTCGTGTCCACCAAGGGACAGTAGCCAGAGCTCCTCTTCCTTTACCAGGCAA
 721 GGTGCATCCCCTCAGCCCTCCTGGCCCTTCAGTCTTGGTGCCACCTGGGCACAGGGGCAAGCTTGGTGGTTGTGAGTCCA
 801 TTCATCTATCAGAGCTGGAACCTCATCCCTGCACAGATGAGGAAACCAAGGCATGGAGCAGTTCCCAGAGTCGAATCTAG
 881 ATCTCATCTGTCATCCGGGTCTTATCCTTTGCTCTGTTTTTCTCTTCAGGCTCTGGAAAATCAGATCTGTGACTTAATCT
 961 TCCTCTCCCTGGCCCTCACCCACTTAGTTTCTTTTTCATTCCTGCTCCCTGCCTTAACTCCTCCTCCCACTGCCCCTGAT
1041 CCCAGGCCCAGGCTTTTACAACCTGGTGCTCAGCTTCCCCATCAGTGAAAAGGGGTGGCTAGAGTAACTAACCTCAGCAG
1121 GCCGTCCAGTCCTGATAGTCTGTGGATTTCGGATCCTTCTCAGGAAGCTTCATGTCTAATGGAGACTATAATTATAACTC
1201 CTGTTCTGCATAGAGCATTTGCATCAAAGGCTTTCCATACCCCTCCCTCCCCTGGTCCTCATAAGATCCTTGAAGCAGGT
1281 TCCTATTCCTCATTGGCAACATGGCAAACAGATCACAGGAGTCAAAGGGCCTTGCTCAAGGTCCCCAGCTTCAGCCCCAG
1361 GCCCTAAGCCAGCGTCAGAACAGTCAATCTGCATTTTTCATCAGTCATTCTATAGTGACATCATCCCAGACTGCCTTCTG
1441 TATTCCCCTGTGTACAGTCTCCTTCTGTTTCTAGGTTTAGAAGTTCAGAGGTGACTGTGTTTCTCCATTTCCACAGCCAA
1521 ATGGGGGAAGAGGTGAGGCTAGGGGAGTGCTGTGCTGATTCTCCAGCCATGGTCAGACAGGTCACCCAGGAGCCTCGAGG
1601 AAAGCCCTGGAGGGAATCACATGTGTACTTTTTCATGAAGCTTTTTGCAAAGCACATCTGCGATACACTAGTTTATTGAA
1681 CTAATGTCCAGGAGTAGACATGATTGGTGGCCAAGTTATTTGGGGACACCTAAACAGATCAGTGACCTGAATGACTTCTC
1761 AGAACCTTTAATATGCCAATGTGTGTGGCAAACTTACAAGAAGGGAGCTAAGTATCCAGCCTCTCCCAAACCTCTTTGAA
1841 CAAAGCTTCTGTCCCTCCCACACCTCTCACCTCACAGGCACATCAGGCTGCAGAATGCGCTTTAGAAAGCATTGTTTTAG
1921 TCCAGGCACAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACAAGGTTGGGAGATTGAG
2001 ACCATCCTGGCTAACACAGTGAAACCCTGTCTCTACTAAAAAAATACAAAAAATTAGCTTGGCGTGGTGGTGGGCGCCTG
2081 TAGTCCCAGCAGCTTGGGAGGCTGAGGCTGGAGAATGGTGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCAAGATCGCG
2161 CCACTGCACTCCAGCCCGGGTGACAGAGCAAGACTCCGTCTCAAAAAAAAGAAAAGAAAAAAGAAAGCATTGTTTTAATT
2241 GAGAGGGGCAGGGCTGGAGAAGGAGCAAGTTGTGGGGAGCCAGGCTTCCCTCACGCAGCCTGTGGTGGATGTGGGAAGGA
2321 GATCAACTTCTCCTCACTCTGGGACAGACGATGTATGGAAACTAAAAAGAACATGCGGCACCTTAAAAAAAAAAAAAAAA
2401 AA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucUCCG--UCCAAGGACCUAGUa 5'
            ||||  ||||   ||||||| 
Target 5' ggAGGCCGAGGTGGGTGGATCAc 3'
1961 - 1983 161.00 -20.90
2
miRNA  3' ucUCCGU-CCAAGGACCUAGUa 5'
            |||||   |||||||: || 
Target 5' tgAGGCATCATTCCTGGGCCAg 3'
646 - 667 123.00 -21.50
3
miRNA  3' ucUCCG----UCCAAGGACC-UAGUa 5'
            :|||    || | | ||| |||| 
Target 5' tgGGGCCTTGAGTTACATGGAATCAc 3'
151 - 176 121.00 -12.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN32062446 2 COSMIC
COSN30537950 10 COSMIC
COSN19691185 26 COSMIC
COSN30106186 48 COSMIC
COSN24392016 53 COSMIC
COSN31541638 78 COSMIC
COSN31579752 84 COSMIC
COSN31608902 87 COSMIC
COSN24403426 104 COSMIC
COSN30120662 207 COSMIC
COSN26549988 235 COSMIC
COSN18718539 245 COSMIC
COSN24310358 254 COSMIC
COSN15631932 301 COSMIC
COSN9411637 306 COSMIC
COSN30596236 307 COSMIC
COSN30560308 385 COSMIC
COSN14746829 472 COSMIC
COSN28193043 523 COSMIC
COSN14792828 590 COSMIC
COSN22876141 831 COSMIC
COSN20102072 958 COSMIC
COSN15234501 1188 COSMIC
COSN32064585 1314 COSMIC
COSN7880555 1367 COSMIC
COSN17480047 1700 COSMIC
COSN5070673 1744 COSMIC
COSN4844397 1884 COSMIC
COSN20580052 1893 COSMIC
COSN8381897 2041 COSMIC
COSN16913376 2076 COSMIC
rs1061837 1661 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs141429436 1 dbSNP
rs1336996012 4 dbSNP
rs555882551 6 dbSNP
rs749784166 8 dbSNP
rs772900477 9 dbSNP
rs769385655 17 dbSNP
rs747804985 19 dbSNP
rs954954619 20 dbSNP
rs537170171 23 dbSNP
rs377468928 24 dbSNP
rs756091602 26 dbSNP
rs764427483 26 dbSNP
rs373213677 27 dbSNP
rs947754159 30 dbSNP
rs752163430 34 dbSNP
rs868292121 44 dbSNP
rs1478186999 47 dbSNP
rs1417317970 50 dbSNP
rs779866527 52 dbSNP
rs1015924237 62 dbSNP
rs1238589117 71 dbSNP
rs1204206594 75 dbSNP
rs758378058 76 dbSNP
rs1005079819 83 dbSNP
rs1274590624 88 dbSNP
rs750309244 95 dbSNP
rs1333505102 99 dbSNP
rs1290951023 100 dbSNP
rs1207483663 102 dbSNP
rs764731224 103 dbSNP
rs570099629 104 dbSNP
rs767690378 108 dbSNP
rs957765742 115 dbSNP
rs1002635728 116 dbSNP
rs557812609 117 dbSNP
rs774623747 125 dbSNP
rs1199401246 127 dbSNP
rs766830795 130 dbSNP
rs1393789927 131 dbSNP
rs1162828914 136 dbSNP
rs905808560 141 dbSNP
rs1415084435 144 dbSNP
rs539474727 148 dbSNP
rs1468915514 149 dbSNP
rs1397272589 152 dbSNP
rs530906823 155 dbSNP
rs1198854647 160 dbSNP
rs978038234 163 dbSNP
rs1270914108 167 dbSNP
rs1223057684 178 dbSNP
rs1399914470 184 dbSNP
rs769440611 186 dbSNP
rs1306197846 187 dbSNP
rs935442682 189 dbSNP
rs967370563 192 dbSNP
rs924019902 197 dbSNP
rs758574733 198 dbSNP
rs776197630 204 dbSNP
rs79663067 205 dbSNP
rs746651333 206 dbSNP
rs922187905 208 dbSNP
rs1350603024 210 dbSNP
rs1204636650 211 dbSNP
rs1158999826 212 dbSNP
rs964119782 217 dbSNP
rs1399512892 218 dbSNP
rs546527370 221 dbSNP
rs1187418824 223 dbSNP
rs1374217202 228 dbSNP
rs1478835616 233 dbSNP
rs1018771306 238 dbSNP
rs1179601405 242 dbSNP
rs1423095996 247 dbSNP
rs975026738 248 dbSNP
rs1005418018 249 dbSNP
rs1404274510 255 dbSNP
rs1192635332 257 dbSNP
rs1488514342 258 dbSNP
rs888241690 259 dbSNP
rs1333430593 261 dbSNP
rs1452678688 263 dbSNP
rs1213519565 264 dbSNP
rs1327016839 264 dbSNP
rs1219874318 265 dbSNP
rs1046976123 270 dbSNP
rs1355713976 273 dbSNP
rs1316879808 275 dbSNP
rs779733995 279 dbSNP
rs116559075 280 dbSNP
rs1368520196 285 dbSNP
rs567374355 289 dbSNP
rs1388799554 290 dbSNP
rs906209800 291 dbSNP
rs1368366262 296 dbSNP
rs368768485 298 dbSNP
rs201824813 300 dbSNP
rs201978887 301 dbSNP
rs527776549 302 dbSNP
rs60344552 302 dbSNP
rs772694172 302 dbSNP
rs969897219 303 dbSNP
rs752787835 305 dbSNP
rs775657853 306 dbSNP
rs1022748646 309 dbSNP
rs781305595 318 dbSNP
rs1260643994 319 dbSNP
rs1184205331 326 dbSNP
rs1488992187 329 dbSNP
rs1263729175 331 dbSNP
rs1200339438 333 dbSNP
rs1210154579 346 dbSNP
rs1345448992 348 dbSNP
rs1419428618 350 dbSNP
rs763656917 351 dbSNP
rs530605440 353 dbSNP
rs1312947346 354 dbSNP
rs1295760343 355 dbSNP
rs755206084 362 dbSNP
rs1216806873 364 dbSNP
rs1342530040 366 dbSNP
rs751758796 376 dbSNP
rs936186735 377 dbSNP
rs563401113 386 dbSNP
rs1268531986 398 dbSNP
rs766851207 402 dbSNP
rs1466894553 405 dbSNP
rs545124286 407 dbSNP
rs977715481 415 dbSNP
rs532999352 425 dbSNP
rs1478514073 434 dbSNP
rs1285982945 438 dbSNP
rs188240405 441 dbSNP
rs759676748 447 dbSNP
rs1326568560 454 dbSNP
rs976760321 462 dbSNP
rs1432826558 466 dbSNP
rs1458980472 467 dbSNP
rs1347622457 468 dbSNP
rs964004981 471 dbSNP
rs13184280 472 dbSNP
rs1156765180 489 dbSNP
rs984571756 490 dbSNP
rs922134076 491 dbSNP
rs1294777785 499 dbSNP
rs1364997404 501 dbSNP
rs1385894591 506 dbSNP
rs541362765 509 dbSNP
rs1039202922 513 dbSNP
rs1190876387 517 dbSNP
rs1322871114 525 dbSNP
rs1223777234 530 dbSNP
rs1263791364 535 dbSNP
rs866064668 537 dbSNP
rs1448122323 538 dbSNP
rs1196583284 540 dbSNP
rs952593198 541 dbSNP
rs942306440 559 dbSNP
rs1192301156 561 dbSNP
rs1025868235 562 dbSNP
rs1166223554 572 dbSNP
rs1263789007 576 dbSNP
rs184527148 578 dbSNP
rs1331607963 582 dbSNP
rs559174748 583 dbSNP
rs1309000143 586 dbSNP
rs906490578 587 dbSNP
rs4958903 590 dbSNP
rs1321166503 594 dbSNP
rs544027518 595 dbSNP
rs981193631 596 dbSNP
rs1260173096 597 dbSNP
rs1456613542 600 dbSNP
rs1196483012 609 dbSNP
rs969759991 610 dbSNP
rs1225892251 613 dbSNP
rs1022779915 617 dbSNP
rs1411619624 627 dbSNP
rs576205711 647 dbSNP
rs957534144 648 dbSNP
rs1425249448 659 dbSNP
rs1463763919 660 dbSNP
rs1011929649 662 dbSNP
rs1450685865 663 dbSNP
rs894766304 664 dbSNP
rs1031548576 666 dbSNP
rs557875957 671 dbSNP
rs1303989175 672 dbSNP
rs1388448254 673 dbSNP
rs902547376 698 dbSNP
rs1364821742 700 dbSNP
rs151337253 701 dbSNP
rs1312549904 712 dbSNP
rs1442357172 721 dbSNP
rs1235611501 722 dbSNP
rs997625256 724 dbSNP
rs902248146 727 dbSNP
rs1193711337 729 dbSNP
rs572114238 731 dbSNP
rs554110959 733 dbSNP
rs1166391768 746 dbSNP
rs1041891562 754 dbSNP
rs900576214 759 dbSNP
rs1039234584 764 dbSNP
rs1174404324 766 dbSNP
rs1389955325 767 dbSNP
rs1359051426 770 dbSNP
rs747778715 772 dbSNP
rs774184706 777 dbSNP
rs768270193 781 dbSNP
rs1177376672 783 dbSNP
rs1047944817 788 dbSNP
rs1435445491 789 dbSNP
rs143914364 790 dbSNP
rs1190652214 796 dbSNP
rs1370021282 801 dbSNP
rs1220675654 807 dbSNP
rs567587152 808 dbSNP
rs748751753 813 dbSNP
rs111401438 822 dbSNP
rs1288126646 827 dbSNP
rs775657142 841 dbSNP
rs981059175 843 dbSNP
rs1203295410 846 dbSNP
rs140157639 851 dbSNP
rs915637616 856 dbSNP
rs911188507 860 dbSNP
rs957192764 864 dbSNP
rs1420732744 872 dbSNP
rs984233505 873 dbSNP
rs1235209440 896 dbSNP
rs1310339533 897 dbSNP
rs1333014041 899 dbSNP
rs1434615555 900 dbSNP
rs977405626 901 dbSNP
rs755964942 902 dbSNP
rs1240692028 922 dbSNP
rs115460362 948 dbSNP
rs1351422340 949 dbSNP
rs1025727100 951 dbSNP
rs1351813762 956 dbSNP
rs113754348 960 dbSNP
rs112596860 963 dbSNP
rs33953356 963 dbSNP
rs754415861 963 dbSNP
rs1452877091 969 dbSNP
rs1218886113 980 dbSNP
rs1252063002 989 dbSNP
rs1440684463 991 dbSNP
rs1370283209 998 dbSNP
rs972597867 1001 dbSNP
rs1378937696 1003 dbSNP
rs1470103118 1006 dbSNP
rs970516851 1008 dbSNP
rs1163863782 1020 dbSNP
rs900608907 1026 dbSNP
rs759581810 1028 dbSNP
rs1024901942 1029 dbSNP
rs1323140906 1031 dbSNP
rs1401376984 1034 dbSNP
rs1447159936 1037 dbSNP
rs1333154870 1038 dbSNP
rs1467937202 1043 dbSNP
rs1012148593 1047 dbSNP
rs1238207482 1047 dbSNP
rs894824649 1053 dbSNP
rs1017663756 1058 dbSNP
rs866646006 1068 dbSNP
rs1176043317 1077 dbSNP
rs1457939599 1080 dbSNP
rs551511799 1081 dbSNP
rs902299634 1093 dbSNP
rs564492366 1095 dbSNP
rs1437665358 1096 dbSNP
rs1188821775 1098 dbSNP
rs1370772351 1102 dbSNP
rs1180234143 1104 dbSNP
rs1164322351 1112 dbSNP
rs1424551051 1113 dbSNP
rs1467398852 1116 dbSNP
rs1329613548 1122 dbSNP
rs1048341128 1123 dbSNP
rs12654727 1124 dbSNP
rs1201961666 1128 dbSNP
rs1292171125 1130 dbSNP
rs547333251 1150 dbSNP
rs901309879 1151 dbSNP
rs1255280940 1155 dbSNP
rs1255809305 1168 dbSNP
rs1209282821 1180 dbSNP
rs1339138385 1193 dbSNP
rs1201447465 1195 dbSNP
rs1258805585 1214 dbSNP
rs192866790 1215 dbSNP
rs942915756 1221 dbSNP
rs1285940121 1224 dbSNP
rs911463424 1225 dbSNP
rs1168788797 1249 dbSNP
rs1048895781 1254 dbSNP
rs1461244518 1255 dbSNP
rs1227295654 1262 dbSNP
rs557852139 1266 dbSNP
rs1432810445 1270 dbSNP
rs1314513604 1271 dbSNP
rs146613600 1279 dbSNP
rs1340563259 1285 dbSNP
rs1401385220 1292 dbSNP
rs1400529129 1301 dbSNP
rs539037137 1302 dbSNP
rs1325507442 1305 dbSNP
rs1234341845 1313 dbSNP
rs989950011 1316 dbSNP
rs935747180 1326 dbSNP
rs972774839 1328 dbSNP
rs1489304638 1329 dbSNP
rs1191613864 1338 dbSNP
rs970569207 1339 dbSNP
rs576266482 1342 dbSNP
rs564297279 1343 dbSNP
rs545918003 1344 dbSNP
rs757087300 1348 dbSNP
rs771306816 1349 dbSNP
rs1172934421 1356 dbSNP
rs976085437 1361 dbSNP
rs917728905 1373 dbSNP
rs572075615 1374 dbSNP
rs779162003 1378 dbSNP
rs1383730453 1381 dbSNP
rs959576566 1386 dbSNP
rs778232711 1387 dbSNP
rs1303002829 1401 dbSNP
rs114331565 1408 dbSNP
rs1234092473 1410 dbSNP
rs1006327830 1412 dbSNP
rs1000974255 1413 dbSNP
rs1301439441 1416 dbSNP
rs1260243934 1420 dbSNP
rs1488877138 1422 dbSNP
rs1211828004 1425 dbSNP
rs1265616814 1426 dbSNP
rs887843403 1429 dbSNP
rs73796621 1435 dbSNP
rs1020662885 1438 dbSNP
rs1207550580 1439 dbSNP
rs997197147 1446 dbSNP
rs901362282 1450 dbSNP
rs1041223298 1452 dbSNP
rs1362675382 1454 dbSNP
rs1458024275 1457 dbSNP
rs1045926799 1459 dbSNP
rs1266782530 1467 dbSNP
rs1007038575 1470 dbSNP
rs553664261 1493 dbSNP
rs1013114242 1494 dbSNP
rs766508036 1505 dbSNP
rs1222543727 1523 dbSNP
rs1306966758 1524 dbSNP
rs1322400909 1528 dbSNP
rs1314818279 1532 dbSNP
rs1436333238 1533 dbSNP
rs1263848028 1537 dbSNP
rs1468210312 1543 dbSNP
rs1367975478 1544 dbSNP
rs1319207478 1545 dbSNP
rs1400136301 1549 dbSNP
rs1048608988 1550 dbSNP
rs931310853 1553 dbSNP
rs1212800175 1554 dbSNP
rs1238535672 1557 dbSNP
rs1458955377 1561 dbSNP
rs1175404192 1572 dbSNP
rs1249797717 1579 dbSNP
rs1423829590 1581 dbSNP
rs918569198 1585 dbSNP
rs189722066 1597 dbSNP
rs1171011564 1599 dbSNP
rs185154658 1605 dbSNP
rs1402872865 1621 dbSNP
rs535327577 1632 dbSNP
rs1165180503 1634 dbSNP
rs1298092398 1635 dbSNP
rs1054511513 1636 dbSNP
rs1397795477 1650 dbSNP
rs866422953 1656 dbSNP
rs935794090 1657 dbSNP
rs1061837 1661 dbSNP
rs1188930022 1662 dbSNP
rs1260308088 1663 dbSNP
rs61740043 1665 dbSNP
rs991100911 1666 dbSNP
rs148543377 1680 dbSNP
rs1187867925 1682 dbSNP
rs925199008 1685 dbSNP
rs371875388 1694 dbSNP
rs1183047746 1696 dbSNP
rs450821 1700 dbSNP
rs374011229 1709 dbSNP
rs1425399920 1714 dbSNP
rs1408516211 1718 dbSNP
rs966366396 1720 dbSNP
rs1020546653 1722 dbSNP
rs1360214519 1722 dbSNP
rs1468052795 1727 dbSNP
rs1311632730 1738 dbSNP
rs963955844 1739 dbSNP
rs767961464 1748 dbSNP
rs985165415 1758 dbSNP
rs1360139408 1759 dbSNP
rs965789156 1771 dbSNP
rs1272048911 1774 dbSNP
rs1312607196 1775 dbSNP
rs1212896833 1776 dbSNP
rs1026776337 1779 dbSNP
rs539555155 1785 dbSNP
rs1017303684 1786 dbSNP
rs1007480583 1799 dbSNP
rs1216723026 1813 dbSNP
rs762333241 1816 dbSNP
rs1024424791 1821 dbSNP
rs1027669329 1830 dbSNP
rs995745838 1831 dbSNP
rs1013145479 1840 dbSNP
rs897399538 1842 dbSNP
rs1274993165 1845 dbSNP
rs894717780 1846 dbSNP
rs868330165 1861 dbSNP
rs1420308943 1862 dbSNP
rs1037060272 1864 dbSNP
rs192194725 1869 dbSNP
rs1343605427 1881 dbSNP
rs1430248827 1894 dbSNP
rs1275704929 1896 dbSNP
rs754548484 1898 dbSNP
rs1054142037 1899 dbSNP
rs1000246853 1906 dbSNP
rs1347067667 1910 dbSNP
rs3051861 1916 dbSNP
rs1216657373 1919 dbSNP
rs896606105 1921 dbSNP
rs527430014 1939 dbSNP
rs937843626 1940 dbSNP
rs547153800 1941 dbSNP
rs902937725 1943 dbSNP
rs925116951 1944 dbSNP
rs979769090 1954 dbSNP
rs1331704856 1956 dbSNP
rs1440871313 1960 dbSNP
rs945323606 1962 dbSNP
rs1385198083 1964 dbSNP
rs528926568 1967 dbSNP
rs537667394 1968 dbSNP
rs561514888 1976 dbSNP
rs965651788 1997 dbSNP
rs1017776906 2008 dbSNP
rs879799864 2020 dbSNP
rs1431340948 2026 dbSNP
rs1351851963 2028 dbSNP
rs1442747465 2029 dbSNP
rs10059048 2033 dbSNP
rs985875878 2044 dbSNP
rs1167215923 2045 dbSNP
rs770804367 2045 dbSNP
rs1281257029 2049 dbSNP
rs1347899610 2056 dbSNP
rs7446796 2057 dbSNP
rs550457669 2059 dbSNP
rs531836427 2060 dbSNP
rs187556685 2063 dbSNP
rs897450495 2064 dbSNP
rs1015846536 2066 dbSNP
rs200264911 2069 dbSNP
rs774818112 2069 dbSNP
rs113366653 2071 dbSNP
rs1231734359 2071 dbSNP
rs1469639717 2072 dbSNP
rs896449033 2073 dbSNP
rs572286260 2075 dbSNP
rs938080298 2076 dbSNP
rs971435952 2078 dbSNP
rs903921279 2080 dbSNP
rs781176283 2081 dbSNP
rs1318655624 2083 dbSNP
rs1013010066 2086 dbSNP
rs1330738779 2089 dbSNP
rs1333910339 2090 dbSNP
rs1286728414 2093 dbSNP
rs1440778785 2094 dbSNP
rs374133679 2095 dbSNP
rs1231041684 2096 dbSNP
rs1272227850 2097 dbSNP
rs1244949865 2103 dbSNP
rs913853899 2104 dbSNP
rs1272964847 2107 dbSNP
rs1319020052 2109 dbSNP
rs1197941970 2114 dbSNP
rs1271422573 2116 dbSNP
rs975934630 2116 dbSNP
rs944397243 2118 dbSNP
rs760678946 2119 dbSNP
rs986190078 2121 dbSNP
rs1188280771 2123 dbSNP
rs999873406 2128 dbSNP
rs951853249 2131 dbSNP
rs1277183014 2133 dbSNP
rs541948773 2134 dbSNP
rs866528587 2135 dbSNP
rs1308789160 2137 dbSNP
rs1169455705 2142 dbSNP
rs1394184428 2144 dbSNP
rs1409277198 2147 dbSNP
rs1313449203 2152 dbSNP
rs1356810648 2156 dbSNP
rs1411932425 2157 dbSNP
rs574787832 2158 dbSNP
rs556239569 2159 dbSNP
rs371168791 2160 dbSNP
rs1414897262 2163 dbSNP
rs1013820935 2164 dbSNP
rs543760674 2165 dbSNP
rs902883196 2168 dbSNP
rs1210254071 2169 dbSNP
rs144720786 2171 dbSNP
rs1479786529 2172 dbSNP
rs1033713022 2177 dbSNP
rs558068265 2178 dbSNP
rs1371096424 2179 dbSNP
rs1474999253 2181 dbSNP
rs1377215211 2187 dbSNP
rs1412112351 2188 dbSNP
rs903973833 2190 dbSNP
rs1385166974 2192 dbSNP
rs997961542 2195 dbSNP
rs184749759 2197 dbSNP
rs539672139 2198 dbSNP
rs1250670082 2211 dbSNP
rs1428023627 2211 dbSNP
rs560178998 2217 dbSNP
rs892279560 2218 dbSNP
rs565730781 2222 dbSNP
rs944656077 2227 dbSNP
rs910442680 2228 dbSNP
rs754112839 2229 dbSNP
rs78609998 2233 dbSNP
rs1261369136 2239 dbSNP
rs1048824880 2242 dbSNP
rs535160563 2246 dbSNP
rs1199246579 2248 dbSNP
rs1396768451 2266 dbSNP
rs1452529154 2267 dbSNP
rs971767690 2269 dbSNP
rs1363845129 2274 dbSNP
rs1454956967 2275 dbSNP
rs1286748044 2278 dbSNP
rs35200804 2278 dbSNP
rs568049406 2285 dbSNP
rs1259700711 2294 dbSNP
rs1442043322 2294 dbSNP
rs551854866 2295 dbSNP
rs1440775594 2296 dbSNP
rs1322863495 2298 dbSNP
rs919274639 2303 dbSNP
rs1289090914 2305 dbSNP
rs1236989113 2306 dbSNP
rs1260294645 2312 dbSNP
rs796690772 2321 dbSNP
rs950151215 2323 dbSNP
rs1254627110 2325 dbSNP
rs750142801 2326 dbSNP
rs374379757 2332 dbSNP
rs1192932456 2337 dbSNP
rs779975030 2338 dbSNP
rs1251234234 2345 dbSNP
rs547516490 2349 dbSNP
rs1156350336 2350 dbSNP
rs767346186 2352 dbSNP
rs149362823 2361 dbSNP
rs1332066529 2362 dbSNP
rs959093795 2363 dbSNP
rs1469253200 2364 dbSNP
rs1033175711 2372 dbSNP
rs1299183893 2373 dbSNP
rs1034341953 2375 dbSNP
rs139687467 2376 dbSNP
rs868355750 2377 dbSNP
rs1019973143 2379 dbSNP
rs1356232860 2380 dbSNP
rs1235336439 2381 dbSNP
rs1271580362 2382 dbSNP
rs1160703921 2383 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucuccguccaAGGACCUAGUa 5'
                    |||||| | | 
Target 5' auugagaccaUCCUGGCUAAc 3'
14 - 34
2
miRNA  3' ucuccgUCCAAGGACCUagua 5'
                ||||   |||:    
Target 5' ---acaAGGU---UGGGagau 3'
1 - 15
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_015621 | 3UTR | CCGAGGUGGGUGGAUCACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_015621 | 3UTR | CCCAGCACUUUGGGAGGCCGAGGUGGGUGGAUCACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000355417.2 | 3UTR | ACAAGGUUGGGAGAUUGAGACCAUCCUGGCUAAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer 0.398 2.7e-2 0.306 7.3e-2 24 Click to see details
GSE14794 Lymphoblastoid cells 0.195 3.3e-2 0.160 6.6e-2 90 Click to see details
GSE27834 Pluripotent stem cells 0.329 1.1e-1 0.315 1.2e-1 16 Click to see details
GSE42095 Differentiated embryonic stem cells -0.241 1.3e-1 0.000 5.0e-1 23 Click to see details
GSE21687 Ependynoma primary tumors -0.138 1.4e-1 -0.062 3.1e-1 64 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.198 1.7e-1 0.155 2.3e-1 25 Click to see details
GSE28260 Renal cortex and medulla 0.265 1.9e-1 0.243 2.1e-1 13 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.174 2.3e-1 0.147 2.7e-1 20 Click to see details
GSE21849 B cell lymphoma -0.135 2.4e-1 0.028 4.4e-1 29 Click to see details
GSE17498 Multiple myeloma 0.113 2.4e-1 0.150 1.8e-1 40 Click to see details
GSE17306 Multiple myeloma 0.075 3.0e-1 0.107 2.3e-1 49 Click to see details
GSE38226 Liver fibrosis 0.118 3.1e-1 0.148 2.6e-1 21 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.097 3.2e-1 -0.018 4.7e-1 25 Click to see details
GSE19536 Breast cancer 0.046 3.2e-1 0.031 3.8e-1 100 Click to see details
GSE19350 CNS germ cell tumors -0.142 3.3e-1 0.119 3.6e-1 12 Click to see details
GSE32688 Pancreatic cancer 0.069 3.5e-1 0.066 3.6e-1 32 Click to see details
GSE26953 Aortic valvular endothelial cells -0.053 4.0e-1 0.033 4.4e-1 24 Click to see details
GSE19783 ER- ER- breast cancer -0.026 4.1e-1 0.016 4.4e-1 79 Click to see details
GSE19783 ER+ ER+ breast cancer -0.031 4.5e-1 -0.149 2.7e-1 20 Click to see details
GSE19783 ER+ ER+ breast cancer -0.031 4.5e-1 -0.149 2.7e-1 20 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
194 hsa-miR-640 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT097121 TNPO1 transportin 1 2 2
MIRT115090 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 4
MIRT204603 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 8
MIRT204634 MOB4 MOB family member 4, phocein 2 8
MIRT344451 MTRNR2L1 MT-RNR2-like 1 2 2
MIRT405772 EIF5 eukaryotic translation initiation factor 5 2 2
MIRT445876 SENP6 SUMO1/sentrin specific peptidase 6 2 2
MIRT497418 FAM46A family with sequence similarity 46 member A 2 2
MIRT504394 HMX2 H6 family homeobox 2 2 4
MIRT504691 SLCO2B1 solute carrier organic anion transporter family member 2B1 2 8
MIRT512386 MTRNR2L3 MT-RNR2-like 3 2 6
MIRT513003 MAN1A2 mannosidase alpha class 1A member 2 2 2
MIRT513084 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT519122 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 2 2
MIRT523836 F2RL1 F2R like trypsin receptor 1 2 2
MIRT565356 TMCC1 transmembrane and coiled-coil domain family 1 2 2
MIRT575895 Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT576894 Poteg POTE ankyrin domain family, member G 2 2
MIRT613780 RPS6 ribosomal protein S6 2 2
MIRT613934 POLR3A RNA polymerase III subunit A 2 2
MIRT614348 LOH12CR1 BLOC-1 related complex subunit 5 2 2
MIRT614534 NOA1 nitric oxide associated 1 2 2
MIRT617019 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT618247 MANEAL mannosidase endo-alpha like 2 2
MIRT619051 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT619442 ZNF517 zinc finger protein 517 2 2
MIRT619723 FPR2 formyl peptide receptor 2 2 2
MIRT620179 TRIM72 tripartite motif containing 72 2 2
MIRT620370 ANKRD62 ankyrin repeat domain 62 2 2
MIRT621263 RTN2 reticulon 2 2 2
MIRT621463 APOH apolipoprotein H 2 2
MIRT621571 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT621683 TSPYL1 TSPY like 1 2 2
MIRT622866 PDE7A phosphodiesterase 7A 2 2
MIRT624669 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT625607 ZNF84 zinc finger protein 84 2 2
MIRT626111 IL23R interleukin 23 receptor 2 2
MIRT628380 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT628553 MELK maternal embryonic leucine zipper kinase 2 2
MIRT628671 C2orf72 chromosome 2 open reading frame 72 2 2
MIRT628747 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT628776 TMEM154 transmembrane protein 154 2 2
MIRT628918 ZNF430 zinc finger protein 430 2 2
MIRT629174 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT629209 C12orf66 chromosome 12 open reading frame 66 2 2
MIRT629267 SLC5A8 solute carrier family 5 member 8 2 2
MIRT629498 AS3MT arsenite methyltransferase 2 2
MIRT629665 USP1 ubiquitin specific peptidase 1 2 2
MIRT629760 STK25 serine/threonine kinase 25 2 2
MIRT630899 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT631105 SLC15A2 solute carrier family 15 member 2 2 2
MIRT631112 ATCAY ATCAY, caytaxin 2 2
MIRT631450 DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) 2 2
MIRT631505 FFAR4 free fatty acid receptor 4 2 2
MIRT631580 ITGAL integrin subunit alpha L 2 2
MIRT631836 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT632342 SWSAP1 SWIM-type zinc finger 7 associated protein 1 2 2
MIRT633214 ZNF584 zinc finger protein 584 2 2
MIRT633223 ZNF43 zinc finger protein 43 2 2
MIRT633480 ARIH2OS ariadne RBR E3 ubiquitin protein ligase 2 opposite strand 2 2
MIRT633511 LRRC27 leucine rich repeat containing 27 2 2
MIRT633615 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT633652 SLC28A1 solute carrier family 28 member 1 2 2
MIRT633677 ZNF576 zinc finger protein 576 2 2
MIRT634196 TMOD2 tropomodulin 2 2 4
MIRT634388 PLSCR1 phospholipid scramblase 1 2 2
MIRT635817 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT635962 TTC31 tetratricopeptide repeat domain 31 2 2
MIRT636114 YPEL1 yippee like 1 2 2
MIRT636164 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636768 CLUAP1 clusterin associated protein 1 2 2
MIRT637092 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT637316 FAM9B family with sequence similarity 9 member B 2 2
MIRT637540 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT637628 ZNF431 zinc finger protein 431 2 2
MIRT637826 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT637945 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT637968 IRF1 interferon regulatory factor 1 2 2
MIRT638321 RNF11 ring finger protein 11 2 2
MIRT638386 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT639244 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT642608 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT642793 SLC1A5 solute carrier family 1 member 5 2 2
MIRT643847 LACTB lactamase beta 2 4
MIRT644705 ZNF321P zinc finger protein 321, pseudogene 2 2
MIRT645148 DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT646671 CCDC69 coiled-coil domain containing 69 2 2
MIRT647780 ASB8 ankyrin repeat and SOCS box containing 8 2 2
MIRT648554 WDR92 WD repeat domain 92 2 2
MIRT648990 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT649099 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT650141 ZNF426 zinc finger protein 426 2 2
MIRT650791 GSR glutathione-disulfide reductase 2 2
MIRT654967 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT655099 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT655516 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT656289 METTL14 methyltransferase like 14 2 2
MIRT656497 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT657074 JPH2 junctophilin 2 2 2
MIRT657314 HOOK3 hook microtubule tethering protein 3 2 2
MIRT657419 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 4
MIRT659032 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT659535 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT661532 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT662029 FUT2 fucosyltransferase 2 2 2
MIRT663206 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT663357 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT663557 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663650 POLM DNA polymerase mu 2 2
MIRT663694 ABHD17B abhydrolase domain containing 17B 2 2
MIRT664370 CYB5A cytochrome b5 type A 2 2
MIRT664783 LIAS lipoic acid synthetase 2 4
MIRT665561 TXNL1 thioredoxin like 1 2 2
MIRT665950 TAOK1 TAO kinase 1 2 2
MIRT667338 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT667804 ITIH5 inter-alpha-trypsin inhibitor heavy chain family member 5 2 2
MIRT668804 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT669470 ARPC2 actin related protein 2/3 complex subunit 2 2 2
MIRT669599 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT669806 STOML1 stomatin like 1 2 2
MIRT669944 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT670292 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670381 EMP2 epithelial membrane protein 2 2 2
MIRT670481 DCUN1D2 defective in cullin neddylation 1 domain containing 2 2 2
MIRT670531 KIF1C kinesin family member 1C 2 4
MIRT670565 GLTP glycolipid transfer protein 2 2
MIRT670603 NPHP1 nephrocystin 1 2 2
MIRT670880 CYTIP cytohesin 1 interacting protein 2 2
MIRT670931 LIPG lipase G, endothelial type 2 2
MIRT671261 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT671794 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT671897 GBP4 guanylate binding protein 4 2 2
MIRT672000 SLC35F6 solute carrier family 35 member F6 2 4
MIRT672074 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT672319 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT672853 C22orf29 retrotransposon Gag like 10 2 2
MIRT673395 WNT7B Wnt family member 7B 2 2
MIRT673537 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT674285 ZNF724P zinc finger protein 724 2 2
MIRT674494 TIRAP TIR domain containing adaptor protein 2 2
MIRT675460 NUBPL nucleotide binding protein like 2 2
MIRT675569 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT676068 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676254 PBOV1 prostate and breast cancer overexpressed 1 2 2
MIRT676377 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676758 SNX2 sorting nexin 2 2 2
MIRT676773 NPHS1 NPHS1, nephrin 2 2
MIRT676874 ENSA endosulfine alpha 2 2
MIRT676918 KLHDC8A kelch domain containing 8A 2 2
MIRT676944 S1PR3 sphingosine-1-phosphate receptor 3 2 2
MIRT676957 HFE hemochromatosis 2 2
MIRT676967 RNF19B ring finger protein 19B 2 2
MIRT676972 ZNF708 zinc finger protein 708 2 2
MIRT677042 ZNF34 zinc finger protein 34 2 2
MIRT677070 VMAC vimentin type intermediate filament associated coiled-coil protein 2 2
MIRT677093 MFSD11 major facilitator superfamily domain containing 11 2 4
MIRT677134 P2RX7 purinergic receptor P2X 7 2 2
MIRT677179 ZNF786 zinc finger protein 786 2 2
MIRT677228 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677320 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT677455 PDLIM3 PDZ and LIM domain 3 2 2
MIRT677809 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT677937 ZNF519 zinc finger protein 519 2 2
MIRT678063 UBN2 ubinuclein 2 2 4
MIRT678072 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678252 FXN frataxin 2 2
MIRT678315 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678367 XIAP X-linked inhibitor of apoptosis 2 4
MIRT678372 RNF115 ring finger protein 115 2 2
MIRT678410 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678518 ZNF347 zinc finger protein 347 2 2
MIRT678566 CDK4 cyclin dependent kinase 4 2 2
MIRT678580 PPP1R3B protein phosphatase 1 regulatory subunit 3B 2 2
MIRT678820 PDE6A phosphodiesterase 6A 2 2
MIRT678917 XPOT exportin for tRNA 2 2
MIRT679217 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679437 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT679595 HILPDA hypoxia inducible lipid droplet associated 2 2
MIRT679755 TLR6 toll like receptor 6 2 2
MIRT679800 APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A 2 2
MIRT680057 CD96 CD96 molecule 2 2
MIRT680116 CCDC30 coiled-coil domain containing 30 2 4
MIRT680181 ZNF554 zinc finger protein 554 2 2
MIRT680439 WDR12 WD repeat domain 12 2 2
MIRT680789 ZNF578 zinc finger protein 578 2 2
MIRT692464 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 2 2
MIRT702952 HIP1 huntingtin interacting protein 1 2 2
MIRT706016 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT706032 F2R coagulation factor II thrombin receptor 2 2
MIRT706135 MTRNR2L10 MT-RNR2-like 10 2 2
MIRT706394 HAS2 hyaluronan synthase 2 2 2
MIRT713293 DCP2 decapping mRNA 2 2 2
MIRT716583 BRAP BRCA1 associated protein 2 2
MIRT720433 C19orf47 chromosome 19 open reading frame 47 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-640 Paclitaxel 36314 NSC125973 approved resistant High Ovarian Cancer tissue and cell line (SKOV3)
hsa-miR-640 Cetuximab resistant High Colon Cancer cell line
hsa-miR-640 Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Mitoxantrone 4212 NSC279836 approved resistant High Breast Cancer cell line (BT-20, BT-474, BT-549, CAMA-1, HCC1143, HCC1395, HCC1569, HCC1806, HCC-1937, HCC1954, HCC202, HCC38, HCC70, Hs578T, MCF-7, MDA-MB-175VII, MDA-MB-231, MDA-MB-361, MDA-MB-415, MDA-MB-436, MDA-MB-468, SKBR3, T47D, UACC812, EVSA-T, MPE-600 , SK-BR-
hsa-miR-640 Sorafenib 216239 NSC747971 approved sensitive Low Clear Cell Renal Cell Carcinoma cell line (786-O)
hsa-mir-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-640 Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-640 Tamoxifen 2733525 NSC180973 approved sensitive cell line (TamR8)
hsa-miR-640 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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