pre-miRNA Information
pre-miRNA hsa-mir-4749   
Genomic Coordinates chr19: 49854591 - 49854651
Description Homo sapiens miR-4749 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4749-3p
Sequence 42| CGCCCCUCCUGCCCCCACAG |61
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN19730808 2 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs147943327 1 dbSNP
rs148982635 2 dbSNP
rs372882504 3 dbSNP
rs200056596 4 dbSNP
rs570340094 5 dbSNP
rs778438436 11 dbSNP
rs748573000 13 dbSNP
rs770230641 14 dbSNP
rs201103722 16 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZKSCAN2   
Synonyms ZNF694, ZSCAN31, ZSCAN34
Description zinc finger with KRAB and SCAN domains 2
Transcript NM_001012981   
Expression
Putative miRNA Targets on ZKSCAN2
3'UTR of ZKSCAN2
(miRNA target sites are highlighted)
>ZKSCAN2|NM_001012981|3'UTR
   1 TGATGATCTTCTCTTCCTAAATGCCCCCTTAGCCATTTTACCCTAATCTCATTCTTGGAAGCAATCTTTTCTTAGCTATG
  81 AAGTGTAATTTCCAAGATAAACTTGAGAATATAAATAAACTAAACACTTTCATCCTGTTCTCACCTCTGCCTCTAACTTC
 161 ATCAGTCTGTTCCTCCTCTTCTGTGTGTCTCAGCTTCTCCTTTAAGAATGTGGCGAAGATACATTGTCCGAGTTCAGAAT
 241 GAAATACCCTTCAGTACATTGAGGCCACTGCAACTGGATTGCTAAGTTCGGCAACATTCAAGATCTTCCATATGGGTGAG
 321 AGTTGTCTTCAAGGATATAAAAAATGCCAAAAGTTTTTTTGTTGTTATTACCTACTCCGTGAGATCCTGGATGAAACTTG
 401 ATAACAGATTTTCACATTTAGATAGAACTTTGAGGAGTCTGATCGGAACTACATCAAATCCATCTTGGTTTTGAAGAGAT
 481 CCACAAAAGAAGAGTGAAGATTTTATAGCTTTCCTCAGAAGTCTGTTACAGTGTACCTTTTTTTTTTTTTTTGTCAAGAA
 561 GTTGATCCAAATAGCTAGGGCAGAATCCCTGTATTGTCACTGAAATCCTGTTACTAATGCCTTGCCCTCCATGGAGGTGA
 641 GAAGCAATTGATCACCCCTCATCCTTTTCTGTACCCGAAGACTTAAATCCCCTGGCTGCTGCTTCTCCAGCCTATAAGTA
 721 ATCCCAGGTCCTCCTACTGTTTCTCATAGCCCTGCACTTGCCTCTCAGTTGCTCTGGGTGCTCCTGCCGGCCTCTTCCGA
 801 ACTACCATGCCCTCCTCAGATAGAATAGGAGGCCTGCTCGTGGTGTGTCTCACTAAAGCAAAGTAGGATTTCAGATGCGT
 881 TCTAGTTCTATCCTCTAACTTCTCTGGCTCTTATCTAGAACATGACTGGCATGTTGGCATATTTCGTACCTCCCACCCCT
 961 GCACTGCAGTATAATATTATAATAGTGTTTCTAAAACTTTAAGGGGATAGGGAAGAGGTAATAGACACCTGAAGCATTTC
1041 TAAGACCAGTTGGACTCCTTTGGCCTGCTGTCGATCAGATAGCCACCTCAGCTTAGACCAGCGCTCTCAGGTCTGGCTGT
1121 TAAATCTCCCAGTCTCTTTTCCTGAGGCTTCTAGTCCCTGTTCACCGCATCAGAAACCTAACTGTAGTGTGCCAAGTAAC
1201 TTAACACAACTCTAGAGCTCACTGGGTGAAAAGTGGGAACATTTATAAAAACTTCAATCCAGAAATCCAGAACACCGTTT
1281 TTGTTTTCCTCATTTACTTGTTTTGTCTGAAAAATCTCTTTGAGAACCCCCGGCAGTAACCCAGTAAACACTGAAGGAAA
1361 AGTTCTGATGGGGGATGGTTAATTGACTTTTGAAGTTACAGATGAAACCCAGAGATTTGATTTTCCATGGCCAGTTGCTT
1441 CAGGATGGAGTCAGTGGCGTTTATTCCCTTAGTATGTAGGTGACCCAGGGTGGCTTTGCTTTGGCAAGGGAGAAGTCACA
1521 AGTTTAATGGGAAGGGAACCGGAGTTAGGGCTGTTTGTGGGTGATTATTTTGCTCTTCTCTCTCCCTTTCTTTGTCAAAT
1601 GCTCTTATTTGAAGCCATCTGGAAATGATATTTTTCCTTTTGGTATGTTTCAATCTTTTGAAACTTGTTCAGCAAAGTAC
1681 CTAGGAGGGTAGGCACTGTAGAAAGAAATCTAATTTATGGTGCCAGAATAGGGTGTGGCCTGTTGGAAGGCAGGTGACTC
1761 AGGTAGACATTGATAAATGTTTCTGATTTACATTTGTTGGAAATATTATGACTGTTCACATCTCAATAGGTTGATTTTTC
1841 TGTGTTGTCCAAGTTATAGATTTCTAATGCTAAGTACAGTTCCATGTTGGTAGTGTGCGTAGCACAGTAAGATGTTTGTG
1921 GTGCCAGTGGGCTTGTGTTTATATTGTGTAGATGTTCTGGAATTCCAGCTCTAGAGAAGATGTAAATTAATAGAAATCAC
2001 CACTTAATAATATGTACACAGGATTGATATTATGTGGAAGCATGATTCAGGAAAGTAGATGACTTATTCATAAATATGAA
2081 GCACTGTTACATGTAAGGCCATGTTCTAGCCACAGTGAATGATAGAAAAAGGAAGGAAGGGGCATGGTGCCTGGGCTCAA
2161 GGAACTCACAGTTTGATAGAGGAAGCATCACAGCAAAAGTTGGGGCCACTTACACCATGGCAGTTACAGAAGGCCAGGAG
2241 CTCAGTCATGAGAACATCACCTTCCCCTGCAGAAGAGTTGCGCTAAGTTGCCCAGAATCATATTCTGTACCTTCATCTCT
2321 CAACCTTCCCCAGTGGCAGGAAAGGGTCAAGCAAGACCCATTCCCTCTCTAGTGGGACAAACTGATTCTGTTTAACTCTC
2401 ATATGCCTGGGAGCAAGCTGAGGTGGAATTTGGGTTCCCCTATCTCTACTCCTAATTGTAAATGGGCTGTCTAGACATGT
2481 GTTACATTAATTTGATGAACTTTGTTCTGAAGAAATGGAAGGTCTCCCCCCCATTTTAGACCAACACTACCTGTCTCCCT
2561 GCATTTTATTTGTTTTCACCTGGTACATGTAAGTCAAAATGAATAATCATGTTCTGACCAATGTGTCTTTTAGATCACAT
2641 AACATTGCCTTTATGAAGATTCATAGAAAAAGGTTTTTTTATCTAGATCTCAGTGCCAAGGAAAGCTCTGATCCTAAGCG
2721 CAGTATGTGTACACACACACGTCTACATGTGTGTGTAGATCTGTATGTATGTATTACAAACACTGTGATTTTTGTAACTT
2801 AAGCTGCTTTTTCTCTCTTTGTTCTGGCTGCTGGAAAGTTCAACAAAACTTACAGCCCACCTCAACCAACTACCCCAACC
2881 TATATTTATTTAATTTCATCTTATTTCCTTGTAAATTGTGTCAAATCCTGTTTTTGAAAAGCAGCATAGACTGACAACTT
2961 TTCACTATCATCTTATCGAAGGCATTTTGGAAACTGGGGTCGTATGTCCCACCTAGGCTTGCTTTGTTACTGCCACAAAT
3041 ACCTCCAGTTCTTACCAGTGATGTTATTATGCATTCAACCTAATTCATTCATCTGGAAAGAAACAGTTTTTTAAAAAGGG
3121 AAACCTCACACGTAAATGGCTCAGGGCAGCCTGGCCTTGGTGGAATGAGCATGAGACTGGAAGCTGAAAGAAGCAAGTTT
3201 TAATCTTGTCACTAAATGAGTGTTGTTTGACACATCATAGCCTCTCTGGGCCTCGGCTCCTCATCTGAAGAGAAGTTGAA
3281 CTTAACTGCTAAGTTGCTCTGGCTCTAATGTTTCATGAGGCTGTGGAGCGTGATATAGATGCGGAAGAGGTTAGAAGACC
3361 AGGCTGCCGGCCCAGCTGTCCTGTGCCTGCCACATCTGGCCATACCAAATCCATCGCATGCTTCAGGAAAGGGAGGGGAT
3441 GCTGTGACAGCAAACTCAGCCCAGGAGCTTGTTGGGGAAGGAGAAAGGGCAAGTCCCTCGTGGTCCACAGCAGGCACCCC
3521 CCAAGCACCTCGATAACCAGTGGCAGGTAGGCTGAAGTGAAGGAAGCCTCTGTCAGGAGGTCTGGCGCCCAGTGACAGAC
3601 AAGACAGCTGTGAGGGAGCTGGGGCAGCCCTGGCTAAAGGAATGTCTGAGTAACTTGTGAAACTGGAAGCCTCTGCCTCT
3681 GAATGCATTCCAAGACCTGGTGCAAATGGATGTCCATTCATTGTTTTGTATCAGTGTTCACTTAGATGTCTTCTTGAAAA
3761 CTTGTTTGTGGAATAAATGTCTAAAATAAATGGCTCCCACTGGTTTCTGCCATAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gacacCCCCGUCCUCCCCgc 5'
               ||   :|||||||  
Target 5' cttcaGGAAAGGGAGGGGat 3'
3421 - 3440 127.00 -18.30
2
miRNA  3' gaCACCCCCGUCCUC---CCCGc 5'
            || |||| |||||   |||| 
Target 5' ttGTTGGGGAAGGAGAAAGGGCa 3'
3469 - 3491 126.00 -23.50
3
miRNA  3' gacacccCCGUCC-UCCCCGc 5'
                 || ||| |||||| 
Target 5' agaaaaaGGAAGGAAGGGGCa 3'
2124 - 2144 125.00 -17.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30480111 8 COSMIC
COSN30107549 29 COSMIC
COSN30191905 31 COSMIC
COSN27005748 45 COSMIC
COSN8495773 51 COSMIC
COSN31525509 54 COSMIC
COSN30102176 66 COSMIC
COSN30101843 71 COSMIC
COSN30497728 105 COSMIC
COSN30511052 132 COSMIC
COSN31553819 181 COSMIC
COSN4764873 210 COSMIC
COSN31610471 221 COSMIC
COSN32055664 455 COSMIC
COSN27612410 552 COSMIC
COSN26565047 656 COSMIC
COSN1184720 755 COSMIC
COSN9644703 1056 COSMIC
COSN8230864 1187 COSMIC
COSN23882704 1536 COSMIC
COSN5405782 1834 COSMIC
COSN6545944 1880 COSMIC
COSN5405781 2018 COSMIC
COSN17636810 2131 COSMIC
COSN15803678 2286 COSMIC
COSN23423984 2444 COSMIC
COSN28670726 2695 COSMIC
COSN28676101 2720 COSMIC
COSN28637739 2725 COSMIC
COSN26509559 2730 COSMIC
COSN31572437 2741 COSMIC
COSN19265202 2749 COSMIC
COSN31585789 2811 COSMIC
COSN31520307 2897 COSMIC
COSN31584941 2973 COSMIC
COSN31570973 2977 COSMIC
COSN8818220 2985 COSMIC
COSN7302158 2991 COSMIC
COSN21645942 3096 COSMIC
COSN8230863 3220 COSMIC
COSN5215707 3255 COSMIC
COSN25497038 3265 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs746793053 5 dbSNP
rs1185427985 8 dbSNP
rs780006329 11 dbSNP
rs144335469 13 dbSNP
rs750560326 16 dbSNP
rs1216555296 17 dbSNP
rs375189966 19 dbSNP
rs778244349 26 dbSNP
rs756936614 43 dbSNP
rs781130179 47 dbSNP
rs541034210 48 dbSNP
rs753083961 51 dbSNP
rs112185659 55 dbSNP
rs1469520518 57 dbSNP
rs1294156760 61 dbSNP
rs903488871 64 dbSNP
rs1228735428 74 dbSNP
rs562976086 74 dbSNP
rs192726372 78 dbSNP
rs1041091833 88 dbSNP
rs1184042835 95 dbSNP
rs1264212398 96 dbSNP
rs1009465312 99 dbSNP
rs1440814144 107 dbSNP
rs565186196 121 dbSNP
rs1257055202 126 dbSNP
rs1056301062 129 dbSNP
rs887123425 131 dbSNP
rs1048366116 135 dbSNP
rs1480102928 136 dbSNP
rs939469626 139 dbSNP
rs905276298 141 dbSNP
rs758470255 142 dbSNP
rs752625884 143 dbSNP
rs760813850 144 dbSNP
rs1383387931 149 dbSNP
rs1280871517 156 dbSNP
rs1284253640 158 dbSNP
rs1055401380 160 dbSNP
rs1351982707 161 dbSNP
rs937823117 162 dbSNP
rs927720483 167 dbSNP
rs1213856460 169 dbSNP
rs765129270 178 dbSNP
rs1338253074 181 dbSNP
rs1292292875 183 dbSNP
rs981842484 190 dbSNP
rs1376916760 203 dbSNP
rs1486344150 203 dbSNP
rs1206960918 204 dbSNP
rs1296070140 214 dbSNP
rs966419209 215 dbSNP
rs976944140 223 dbSNP
rs964522438 224 dbSNP
rs187041411 229 dbSNP
rs576219823 230 dbSNP
rs1364000979 241 dbSNP
rs1455080584 242 dbSNP
rs1300668064 251 dbSNP
rs967725599 252 dbSNP
rs1160285620 271 dbSNP
rs114375979 275 dbSNP
rs1009519245 279 dbSNP
rs1417169791 281 dbSNP
rs1370410001 284 dbSNP
rs892383569 285 dbSNP
rs149614841 286 dbSNP
rs958567392 289 dbSNP
rs540571966 290 dbSNP
rs1261342790 296 dbSNP
rs1192882929 299 dbSNP
rs1447990505 301 dbSNP
rs1289612773 303 dbSNP
rs1286943834 304 dbSNP
rs1490214072 310 dbSNP
rs1223088008 311 dbSNP
rs1028574068 312 dbSNP
rs904995818 314 dbSNP
rs182749850 323 dbSNP
rs965506513 331 dbSNP
rs138274630 332 dbSNP
rs1250972995 339 dbSNP
rs540999793 345 dbSNP
rs1004272933 348 dbSNP
rs887153014 349 dbSNP
rs146340184 350 dbSNP
rs977377482 351 dbSNP
rs942898291 361 dbSNP
rs1297897566 364 dbSNP
rs1048883458 367 dbSNP
rs1374527024 367 dbSNP
rs995510682 368 dbSNP
rs1313232147 370 dbSNP
rs1359047308 372 dbSNP
rs899116163 378 dbSNP
rs766104842 379 dbSNP
rs1305624172 381 dbSNP
rs573264063 386 dbSNP
rs937855667 391 dbSNP
rs760213585 400 dbSNP
rs1481509765 401 dbSNP
rs571232199 415 dbSNP
rs1181567783 421 dbSNP
rs373283184 432 dbSNP
rs1444923309 434 dbSNP
rs772843789 435 dbSNP
rs945118034 438 dbSNP
rs551180379 444 dbSNP
rs142071167 445 dbSNP
rs1355440738 446 dbSNP
rs956324463 448 dbSNP
rs772070893 453 dbSNP
rs1335205394 455 dbSNP
rs1034957587 457 dbSNP
rs748291909 460 dbSNP
rs989592316 462 dbSNP
rs936334005 465 dbSNP
rs569053113 480 dbSNP
rs12922546 483 dbSNP
rs1468395539 486 dbSNP
rs1254218510 496 dbSNP
rs1213876710 497 dbSNP
rs1213744516 501 dbSNP
rs1319975508 502 dbSNP
rs778958775 506 dbSNP
rs1262345216 516 dbSNP
rs1023875239 518 dbSNP
rs975703925 520 dbSNP
rs1239813227 522 dbSNP
rs1474814318 523 dbSNP
rs1186640655 525 dbSNP
rs796250485 529 dbSNP
rs965577404 533 dbSNP
rs549236156 545 dbSNP
rs1213556683 552 dbSNP
rs1174729049 553 dbSNP
rs1343691054 553 dbSNP
rs1405820184 553 dbSNP
rs147070578 553 dbSNP
rs200740547 553 dbSNP
rs559927119 553 dbSNP
rs58897018 553 dbSNP
rs869061960 553 dbSNP
rs1339672083 554 dbSNP
rs1221615975 555 dbSNP
rs1282334554 555 dbSNP
rs755846502 555 dbSNP
rs768776710 556 dbSNP
rs888528163 559 dbSNP
rs1220558046 562 dbSNP
rs1271668828 562 dbSNP
rs1438483161 564 dbSNP
rs1281662657 570 dbSNP
rs982879710 578 dbSNP
rs1047096203 590 dbSNP
rs529119526 591 dbSNP
rs560157250 593 dbSNP
rs995934377 607 dbSNP
rs894461416 610 dbSNP
rs1256988125 614 dbSNP
rs1174703414 620 dbSNP
rs1405994481 625 dbSNP
rs1319061264 626 dbSNP
rs1034732463 630 dbSNP
rs1362600011 631 dbSNP
rs749075038 635 dbSNP
rs1302514573 637 dbSNP
rs779723819 643 dbSNP
rs1002137625 661 dbSNP
rs1169835777 663 dbSNP
rs1438283348 664 dbSNP
rs1410692415 672 dbSNP
rs748454363 676 dbSNP
rs190547796 677 dbSNP
rs762318238 683 dbSNP
rs1287519952 712 dbSNP
rs527643903 714 dbSNP
rs1053528818 718 dbSNP
rs1221136813 723 dbSNP
rs780703256 728 dbSNP
rs1268742730 731 dbSNP
rs1454144182 734 dbSNP
rs947495796 736 dbSNP
rs1231594622 739 dbSNP
rs1469806575 745 dbSNP
rs565319581 747 dbSNP
rs774770148 754 dbSNP
rs1422775555 761 dbSNP
rs920958662 766 dbSNP
rs1456827396 771 dbSNP
rs1163030444 780 dbSNP
rs138805979 788 dbSNP
rs975010669 789 dbSNP
rs1326597807 791 dbSNP
rs956378484 792 dbSNP
rs756698767 794 dbSNP
rs1231776265 797 dbSNP
rs576155958 798 dbSNP
rs1380155383 799 dbSNP
rs1244530490 803 dbSNP
rs1304067132 805 dbSNP
rs944301538 809 dbSNP
rs562727265 810 dbSNP
rs114660192 812 dbSNP
rs1005343863 818 dbSNP
rs951560139 822 dbSNP
rs1179690436 823 dbSNP
rs952513991 832 dbSNP
rs1443021104 833 dbSNP
rs769036644 834 dbSNP
rs749601756 840 dbSNP
rs1369925311 844 dbSNP
rs974196060 846 dbSNP
rs1459364673 849 dbSNP
rs1166132632 852 dbSNP
rs1443069094 852 dbSNP
rs780255074 861 dbSNP
rs186257388 863 dbSNP
rs1002869269 875 dbSNP
rs184044392 877 dbSNP
rs1403364069 878 dbSNP
rs994191371 879 dbSNP
rs539271315 880 dbSNP
rs1341798009 881 dbSNP
rs746067753 882 dbSNP
rs534551378 884 dbSNP
rs1024880913 890 dbSNP
rs1199599997 892 dbSNP
rs1460144775 895 dbSNP
rs572408054 897 dbSNP
rs890035270 897 dbSNP
rs1407934169 899 dbSNP
rs1009434221 902 dbSNP
rs1294507782 904 dbSNP
rs1043294689 913 dbSNP
rs150204169 914 dbSNP
rs534077677 921 dbSNP
rs568688351 924 dbSNP
rs1403711570 925 dbSNP
rs537925269 926 dbSNP
rs369866859 938 dbSNP
rs935061812 939 dbSNP
rs927684839 941 dbSNP
rs1403944574 945 dbSNP
rs1000623534 946 dbSNP
rs1485145400 948 dbSNP
rs899546431 949 dbSNP
rs947707978 950 dbSNP
rs568942078 954 dbSNP
rs1280471420 955 dbSNP
rs1223318034 956 dbSNP
rs1212785247 960 dbSNP
rs943704437 971 dbSNP
rs140882211 972 dbSNP
rs1203400216 977 dbSNP
rs1488569787 981 dbSNP
rs952568360 981 dbSNP
rs1195821161 983 dbSNP
rs1426905114 988 dbSNP
rs1479965247 990 dbSNP
rs72771346 993 dbSNP
rs1375699484 1032 dbSNP
rs1378942460 1044 dbSNP
rs752715571 1049 dbSNP
rs972822528 1050 dbSNP
rs1414335099 1055 dbSNP
rs1401117114 1056 dbSNP
rs930188754 1063 dbSNP
rs965840888 1072 dbSNP
rs11645343 1073 dbSNP
rs974606484 1074 dbSNP
rs958854267 1082 dbSNP
rs927361193 1091 dbSNP
rs1302421111 1101 dbSNP
rs1314161302 1102 dbSNP
rs889762498 1106 dbSNP
rs1011817100 1108 dbSNP
rs1345093861 1110 dbSNP
rs191802097 1111 dbSNP
rs1490169493 1113 dbSNP
rs971376728 1116 dbSNP
rs1191485848 1119 dbSNP
rs187436519 1126 dbSNP
rs1157978113 1131 dbSNP
rs1020268883 1132 dbSNP
rs1380339655 1133 dbSNP
rs1009506054 1136 dbSNP
rs1364182554 1139 dbSNP
rs1185182246 1141 dbSNP
rs935136243 1147 dbSNP
rs1370242478 1151 dbSNP
rs1389859863 1157 dbSNP
rs565110900 1163 dbSNP
rs1308750669 1164 dbSNP
rs1474650391 1164 dbSNP
rs551395573 1165 dbSNP
rs531612100 1166 dbSNP
rs1358636107 1167 dbSNP
rs1222286163 1169 dbSNP
rs1032184367 1176 dbSNP
rs1479556543 1178 dbSNP
rs1176436228 1182 dbSNP
rs1189770672 1186 dbSNP
rs906278908 1187 dbSNP
rs562597122 1189 dbSNP
rs1181214658 1193 dbSNP
rs1001098003 1195 dbSNP
rs1384134983 1200 dbSNP
rs1423722199 1209 dbSNP
rs1260066322 1213 dbSNP
rs1216326604 1214 dbSNP
rs1460742799 1216 dbSNP
rs1331115120 1224 dbSNP
rs1401216296 1228 dbSNP
rs542721556 1233 dbSNP
rs1449362226 1234 dbSNP
rs1312990918 1239 dbSNP
rs899619245 1240 dbSNP
rs546289065 1243 dbSNP
rs1228782272 1257 dbSNP
rs1007877329 1261 dbSNP
rs1305711766 1269 dbSNP
rs1197709924 1271 dbSNP
rs529456813 1276 dbSNP
rs560785790 1277 dbSNP
rs930244760 1282 dbSNP
rs1241955723 1283 dbSNP
rs1472818106 1308 dbSNP
rs931219268 1318 dbSNP
rs918455030 1321 dbSNP
rs111545598 1322 dbSNP
rs1427262478 1322 dbSNP
rs766081938 1324 dbSNP
rs1038575687 1328 dbSNP
rs1295402734 1329 dbSNP
rs760433255 1331 dbSNP
rs1335014849 1332 dbSNP
rs867817638 1332 dbSNP
rs180749685 1346 dbSNP
rs927392497 1351 dbSNP
rs1358831658 1359 dbSNP
rs1448784128 1378 dbSNP
rs981539795 1396 dbSNP
rs1359781199 1399 dbSNP
rs1380873824 1399 dbSNP
rs1218003038 1400 dbSNP
rs1361781658 1403 dbSNP
rs1319784335 1412 dbSNP
rs749983761 1427 dbSNP
rs1277416683 1441 dbSNP
rs188246468 1443 dbSNP
rs1442653843 1452 dbSNP
rs558506482 1458 dbSNP
rs913238854 1459 dbSNP
rs1485170327 1469 dbSNP
rs544202525 1476 dbSNP
rs1021622398 1479 dbSNP
rs575311502 1487 dbSNP
rs1174751990 1489 dbSNP
rs1011867872 1497 dbSNP
rs956682842 1504 dbSNP
rs1032669621 1508 dbSNP
rs1415329973 1509 dbSNP
rs892049389 1510 dbSNP
rs1343563362 1512 dbSNP
rs1399290429 1513 dbSNP
rs1000729388 1514 dbSNP
rs1298692232 1519 dbSNP
rs555459276 1531 dbSNP
rs1003461662 1540 dbSNP
rs570586939 1541 dbSNP
rs1260707413 1548 dbSNP
rs1007947869 1553 dbSNP
rs1281496298 1561 dbSNP
rs890835588 1562 dbSNP
rs1216739340 1564 dbSNP
rs535576015 1566 dbSNP
rs947813854 1573 dbSNP
rs1025270351 1580 dbSNP
rs1186912074 1585 dbSNP
rs1398908747 1595 dbSNP
rs1246551978 1596 dbSNP
rs1478468787 1598 dbSNP
rs994238451 1609 dbSNP
rs1486782918 1619 dbSNP
rs1406103241 1630 dbSNP
rs898773483 1631 dbSNP
rs1251104759 1637 dbSNP
rs894845224 1643 dbSNP
rs1159344179 1650 dbSNP
rs1335619480 1651 dbSNP
rs1422738690 1653 dbSNP
rs1039015881 1659 dbSNP
rs1331324001 1665 dbSNP
rs1048043972 1673 dbSNP
rs1275278665 1675 dbSNP
rs1225433991 1676 dbSNP
rs937581575 1684 dbSNP
rs16974539 1689 dbSNP
rs1356453612 1695 dbSNP
rs185387521 1696 dbSNP
rs1369395775 1709 dbSNP
rs1289580679 1710 dbSNP
rs1325891058 1711 dbSNP
rs539336067 1713 dbSNP
rs1439510213 1721 dbSNP
rs1452511469 1725 dbSNP
rs1394486954 1745 dbSNP
rs761268935 1746 dbSNP
rs943886036 1751 dbSNP
rs1439325195 1758 dbSNP
rs1179330988 1761 dbSNP
rs7184511 1766 dbSNP
rs913312556 1768 dbSNP
rs1170842148 1779 dbSNP
rs1451155409 1783 dbSNP
rs985977789 1786 dbSNP
rs1391398154 1792 dbSNP
rs954101968 1796 dbSNP
rs1326619846 1806 dbSNP
rs914614825 1808 dbSNP
rs988866078 1816 dbSNP
rs550483285 1819 dbSNP
rs955992400 1822 dbSNP
rs1031942040 1824 dbSNP
rs531558241 1826 dbSNP
rs568951460 1834 dbSNP
rs1003104310 1839 dbSNP
rs971998085 1839 dbSNP
rs1393182561 1850 dbSNP
rs763370059 1857 dbSNP
rs1256631957 1861 dbSNP
rs979770650 1867 dbSNP
rs17625090 1880 dbSNP
rs529418069 1883 dbSNP
rs35569788 1884 dbSNP
rs1048096642 1885 dbSNP
rs986560980 1890 dbSNP
rs746107650 1893 dbSNP
rs896800125 1898 dbSNP
rs181300633 1899 dbSNP
rs1252150891 1909 dbSNP
rs1422720997 1920 dbSNP
rs1465794534 1925 dbSNP
rs1332911247 1927 dbSNP
rs148061536 1938 dbSNP
rs1394888591 1939 dbSNP
rs1346245900 1941 dbSNP
rs943955696 1942 dbSNP
rs752196347 1948 dbSNP
rs1341589348 1950 dbSNP
rs1303131518 1952 dbSNP
rs912418264 1953 dbSNP
rs1276673226 1960 dbSNP
rs533386367 1976 dbSNP
rs774628372 1980 dbSNP
rs564725950 1987 dbSNP
rs1219665459 1996 dbSNP
rs1260179185 1997 dbSNP
rs1373855763 1997 dbSNP
rs1343149021 2004 dbSNP
rs1199874251 2013 dbSNP
rs768654026 2014 dbSNP
rs898171319 2014 dbSNP
rs1191471039 2021 dbSNP
rs1262430638 2022 dbSNP
rs563065670 2030 dbSNP
rs1172574926 2033 dbSNP
rs1049577656 2034 dbSNP
rs1465294655 2042 dbSNP
rs1001790536 2045 dbSNP
rs143529466 2050 dbSNP
rs1395291233 2061 dbSNP
rs1298450263 2073 dbSNP
rs990205789 2077 dbSNP
rs1045967445 2079 dbSNP
rs950194423 2082 dbSNP
rs1400927209 2083 dbSNP
rs1280492788 2090 dbSNP
rs1373321919 2091 dbSNP
rs1172796413 2097 dbSNP
rs1232875260 2101 dbSNP
rs1454625690 2113 dbSNP
rs1256636117 2119 dbSNP
rs1347170916 2123 dbSNP
rs115657636 2125 dbSNP
rs1488579071 2127 dbSNP
rs1265078040 2142 dbSNP
rs1432211344 2144 dbSNP
rs1199178456 2145 dbSNP
rs1379038592 2159 dbSNP
rs982131513 2160 dbSNP
rs141349855 2162 dbSNP
rs1418634622 2165 dbSNP
rs1360370555 2168 dbSNP
rs1251508593 2171 dbSNP
rs199596594 2178 dbSNP
rs936070916 2187 dbSNP
rs200035599 2190 dbSNP
rs1365984446 2192 dbSNP
rs1386597904 2203 dbSNP
rs747135313 2208 dbSNP
rs575986173 2214 dbSNP
rs1333064977 2221 dbSNP
rs1279998176 2223 dbSNP
rs1212084610 2226 dbSNP
rs1237965553 2232 dbSNP
rs1308705687 2237 dbSNP
rs1350639642 2240 dbSNP
rs1354312715 2246 dbSNP
rs974729945 2247 dbSNP
rs1236240250 2268 dbSNP
rs1334730615 2275 dbSNP
rs1488012098 2279 dbSNP
rs1307091609 2281 dbSNP
rs1268947550 2282 dbSNP
rs1411215324 2290 dbSNP
rs942626987 2292 dbSNP
rs911127846 2323 dbSNP
rs995196633 2324 dbSNP
rs188894735 2336 dbSNP
rs997756422 2347 dbSNP
rs896854174 2348 dbSNP
rs986621468 2350 dbSNP
rs955197055 2359 dbSNP
rs1348674373 2367 dbSNP
rs1457673639 2380 dbSNP
rs1404242825 2396 dbSNP
rs1396956868 2397 dbSNP
rs1156809234 2398 dbSNP
rs1444919317 2403 dbSNP
rs1330738925 2404 dbSNP
rs1377793893 2419 dbSNP
rs1025449097 2420 dbSNP
rs972915553 2430 dbSNP
rs572926926 2433 dbSNP
rs962452719 2436 dbSNP
rs1364393717 2441 dbSNP
rs777968443 2442 dbSNP
rs2345122 2443 dbSNP
rs1474325758 2444 dbSNP
rs1257127973 2449 dbSNP
rs1179624324 2450 dbSNP
rs1412180434 2450 dbSNP
rs891046704 2451 dbSNP
rs1001194119 2473 dbSNP
rs760407674 2479 dbSNP
rs970338517 2483 dbSNP
rs1024543137 2485 dbSNP
rs539590570 2486 dbSNP
rs1464237689 2495 dbSNP
rs1330881991 2497 dbSNP
rs1401329249 2503 dbSNP
rs1444394777 2507 dbSNP
rs1444551389 2512 dbSNP
rs1378337403 2514 dbSNP
rs570322179 2524 dbSNP
rs892952592 2526 dbSNP
rs1054569105 2527 dbSNP
rs924641621 2530 dbSNP
rs556827661 2531 dbSNP
rs147790387 2532 dbSNP
rs12930369 2533 dbSNP
rs950055531 2533 dbSNP
rs904569945 2536 dbSNP
rs1477017294 2545 dbSNP
rs773223566 2553 dbSNP
rs1424519502 2576 dbSNP
rs185342411 2580 dbSNP
rs1174022427 2589 dbSNP
rs973827365 2591 dbSNP
rs368184604 2597 dbSNP
rs755794701 2599 dbSNP
rs544968779 2607 dbSNP
rs1459005313 2610 dbSNP
rs1338356013 2611 dbSNP
rs1341969601 2622 dbSNP
rs943369192 2625 dbSNP
rs1381526585 2640 dbSNP
rs1385618887 2644 dbSNP
rs1015720083 2645 dbSNP
rs1217168804 2654 dbSNP
rs144283465 2662 dbSNP
rs1459987109 2665 dbSNP
rs566932758 2674 dbSNP
rs1028258555 2677 dbSNP
rs1264414722 2681 dbSNP
rs933889268 2681 dbSNP
rs996749656 2681 dbSNP
rs1166011928 2683 dbSNP
rs546783900 2684 dbSNP
rs7201010 2695 dbSNP
rs1424754684 2696 dbSNP
rs1415057282 2714 dbSNP
rs972559465 2718 dbSNP
rs564707688 2719 dbSNP
rs17717344 2720 dbSNP
rs144887387 2725 dbSNP
rs1346791610 2731 dbSNP
rs1434073982 2740 dbSNP
rs1046200954 2741 dbSNP
rs751140388 2741 dbSNP
rs1235764171 2743 dbSNP
rs755440453 2749 dbSNP
rs1352130942 2753 dbSNP
rs113636937 2757 dbSNP
rs374099388 2757 dbSNP
rs991728222 2757 dbSNP
rs1023947972 2758 dbSNP
rs575135150 2759 dbSNP
rs1332109289 2763 dbSNP
rs1271989349 2765 dbSNP
rs1228475671 2766 dbSNP
rs1358051004 2767 dbSNP
rs956275395 2770 dbSNP
rs1226473152 2771 dbSNP
rs1326927337 2773 dbSNP
rs1322535780 2774 dbSNP
rs1032262564 2775 dbSNP
rs149890237 2777 dbSNP
rs904643769 2779 dbSNP
rs1326680089 2782 dbSNP
rs746072379 2783 dbSNP
rs1237483803 2785 dbSNP
rs962488228 2788 dbSNP
rs1159141749 2801 dbSNP
rs193155132 2801 dbSNP
rs1403329035 2805 dbSNP
rs556741737 2815 dbSNP
rs1322654040 2819 dbSNP
rs1350100318 2819 dbSNP
rs1417676398 2819 dbSNP
rs1007571954 2820 dbSNP
rs763531373 2821 dbSNP
rs1328659416 2835 dbSNP
rs1375568075 2852 dbSNP
rs890477358 2852 dbSNP
rs1475975528 2856 dbSNP
rs386789951 2857 dbSNP
rs1392557950 2858 dbSNP
rs75748493 2859 dbSNP
rs2112812 2861 dbSNP
rs1469061531 2862 dbSNP
rs796839592 2862 dbSNP
rs1251778598 2869 dbSNP
rs190221972 2878 dbSNP
rs918502973 2882 dbSNP
rs1270504703 2885 dbSNP
rs1194998538 2911 dbSNP
rs1182635456 2916 dbSNP
rs1234467375 2917 dbSNP
rs996802243 2918 dbSNP
rs1037313113 2921 dbSNP
rs756406871 2944 dbSNP
rs941186348 2955 dbSNP
rs1032892674 2957 dbSNP
rs1231919030 2958 dbSNP
rs1399118635 2963 dbSNP
rs545620755 2965 dbSNP
rs1370189326 2967 dbSNP
rs765666631 2968 dbSNP
rs1330387120 2973 dbSNP
rs902989594 2974 dbSNP
rs1446525827 2977 dbSNP
rs759771899 2978 dbSNP
rs1438755214 2981 dbSNP
rs1352960599 2984 dbSNP
rs1235559490 2995 dbSNP
rs781300906 2997 dbSNP
rs1410877868 3000 dbSNP
rs777114026 3001 dbSNP
rs1252819619 3002 dbSNP
rs1440601945 3009 dbSNP
rs1186801295 3010 dbSNP
rs1045836138 3019 dbSNP
rs1476035907 3021 dbSNP
rs1191245614 3029 dbSNP
rs1372730430 3033 dbSNP
rs1172184103 3034 dbSNP
rs1454186465 3037 dbSNP
rs948426600 3042 dbSNP
rs1191245131 3043 dbSNP
rs894508845 3044 dbSNP
rs1478757417 3049 dbSNP
rs771319757 3063 dbSNP
rs1230815781 3064 dbSNP
rs1180566011 3066 dbSNP
rs1334031563 3067 dbSNP
rs1356676625 3068 dbSNP
rs1416934833 3069 dbSNP
rs1276771146 3071 dbSNP
rs566801774 3073 dbSNP
rs930605461 3078 dbSNP
rs747229216 3079 dbSNP
rs773483734 3080 dbSNP
rs1031918495 3082 dbSNP
rs1486651940 3086 dbSNP
rs1214163707 3088 dbSNP
rs1347023237 3090 dbSNP
rs1428714322 3091 dbSNP
rs1279310128 3093 dbSNP
rs1375597965 3095 dbSNP
rs139934625 3101 dbSNP
rs1371369651 3105 dbSNP
rs912030198 3112 dbSNP
rs1279043300 3113 dbSNP
rs1296711384 3118 dbSNP
rs1384746151 3118 dbSNP
rs986597299 3131 dbSNP
rs968928145 3132 dbSNP
rs1329574555 3136 dbSNP
rs920972696 3148 dbSNP
rs866526312 3155 dbSNP
rs975080391 3157 dbSNP
rs1017705490 3159 dbSNP
rs151118254 3163 dbSNP
rs374775973 3171 dbSNP
rs1024548902 3172 dbSNP
rs1030324032 3177 dbSNP
rs1014379661 3216 dbSNP
rs1264748993 3218 dbSNP
rs1450747313 3223 dbSNP
rs993510541 3234 dbSNP
rs1055772214 3239 dbSNP
rs1455938267 3242 dbSNP
rs1157340854 3243 dbSNP
rs897088583 3248 dbSNP
rs1399469475 3254 dbSNP
rs1036938661 3255 dbSNP
rs941244924 3259 dbSNP
rs749249792 3267 dbSNP
rs1036596929 3269 dbSNP
rs1440509538 3278 dbSNP
rs1044212264 3286 dbSNP
rs1326626324 3296 dbSNP
rs940927892 3305 dbSNP
rs948457409 3315 dbSNP
rs185748294 3321 dbSNP
rs1185505264 3327 dbSNP
rs1485257040 3329 dbSNP
rs932132531 3330 dbSNP
rs1237986344 3335 dbSNP
rs1355178162 3336 dbSNP
rs554592101 3338 dbSNP
rs1213969998 3342 dbSNP
rs144375157 3343 dbSNP
rs1456033515 3349 dbSNP
rs1315077113 3353 dbSNP
rs992531371 3359 dbSNP
rs1177482511 3364 dbSNP
rs934324877 3368 dbSNP
rs192208184 3369 dbSNP
rs2277961 3373 dbSNP
rs969338828 3375 dbSNP
rs1017738529 3376 dbSNP
rs977397752 3377 dbSNP
rs1165870015 3383 dbSNP
rs1414545485 3386 dbSNP
rs1396982469 3390 dbSNP
rs141927639 3393 dbSNP
rs1297750819 3396 dbSNP
rs967695667 3403 dbSNP
rs1393114175 3404 dbSNP
rs1310269669 3405 dbSNP
rs1333826652 3408 dbSNP
rs1233698698 3413 dbSNP
rs1304974893 3416 dbSNP
rs986254855 3421 dbSNP
rs1429179682 3430 dbSNP
rs569607251 3431 dbSNP
rs1315685919 3439 dbSNP
rs1197452764 3453 dbSNP
rs1024185287 3465 dbSNP
rs1157736050 3469 dbSNP
rs993076660 3471 dbSNP
rs1457358351 3472 dbSNP
rs1413698466 3475 dbSNP
rs1254714455 3476 dbSNP
rs954831943 3478 dbSNP
rs1030355379 3481 dbSNP
rs993936136 3483 dbSNP
rs1034414311 3485 dbSNP
rs547058346 3488 dbSNP
rs1016654150 3497 dbSNP
rs745696077 3499 dbSNP
rs888331493 3500 dbSNP
rs1044282687 3503 dbSNP
rs1005174180 3505 dbSNP
rs948531083 3509 dbSNP
rs74511642 3517 dbSNP
rs890708234 3522 dbSNP
rs1415099523 3523 dbSNP
rs375533293 3523 dbSNP
rs532681056 3523 dbSNP
rs1484833381 3524 dbSNP
rs1241493308 3528 dbSNP
rs895590552 3531 dbSNP
rs1056869345 3532 dbSNP
rs900651617 3541 dbSNP
rs1039500475 3545 dbSNP
rs1278736609 3546 dbSNP
rs912937912 3548 dbSNP
rs1485670875 3552 dbSNP
rs934384203 3553 dbSNP
rs539983282 3558 dbSNP
rs924305966 3563 dbSNP
rs1476944633 3567 dbSNP
rs1271354140 3571 dbSNP
rs1043083385 3580 dbSNP
rs1322577343 3586 dbSNP
rs186900225 3587 dbSNP
rs1374766645 3601 dbSNP
rs1213222194 3602 dbSNP
rs947676547 3606 dbSNP
rs376485841 3608 dbSNP
rs1361844809 3610 dbSNP
rs551228650 3612 dbSNP
rs1321877266 3615 dbSNP
rs1270356166 3619 dbSNP
rs1363648508 3624 dbSNP
rs1216969249 3629 dbSNP
rs954863991 3630 dbSNP
rs923414381 3631 dbSNP
rs139672970 3638 dbSNP
rs1283122667 3640 dbSNP
rs551138960 3642 dbSNP
rs1456312709 3643 dbSNP
rs1215531299 3647 dbSNP
rs751156974 3648 dbSNP
rs1457058514 3658 dbSNP
rs1189533400 3661 dbSNP
rs973493689 3664 dbSNP
rs963429038 3665 dbSNP
rs1175383789 3669 dbSNP
rs1016274535 3676 dbSNP
rs1378423452 3680 dbSNP
rs1368721204 3692 dbSNP
rs1318804708 3699 dbSNP
rs548603962 3706 dbSNP
rs1426575288 3710 dbSNP
rs1371037755 3715 dbSNP
rs952644425 3716 dbSNP
rs1442488562 3718 dbSNP
rs570448794 3720 dbSNP
rs1014972079 3728 dbSNP
rs1223570445 3730 dbSNP
rs763601366 3739 dbSNP
rs895672236 3740 dbSNP
rs1057330239 3745 dbSNP
rs1212015302 3746 dbSNP
rs998624854 3747 dbSNP
rs1468925879 3750 dbSNP
rs1195586530 3751 dbSNP
rs757808063 3765 dbSNP
rs1469618794 3780 dbSNP
rs1158911342 3783 dbSNP
rs1409946728 3786 dbSNP
rs753272607 3790 dbSNP
rs1031021328 3793 dbSNP
rs1163695081 3800 dbSNP
rs1042768240 3812 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gacacccCCGUCC-UCCCCGc 5'
                 || ||| |||||| 
Target 5' agaaaaaGGAAGGAAGGGGC- 3'
4 - 23
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000328086.7 | 3UTR | AAAAGGAAGGAAGGGGCAUGGUGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000328086.7 | 3UTR | GAUAGAAAAAGGAAGGAAGGGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
63 hsa-miR-4749-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT082256 MED29 mediator complex subunit 29 2 4
MIRT112161 OTUD3 OTU deubiquitinase 3 2 2
MIRT150036 MIDN midnolin 2 2
MIRT246308 HIST2H2AA3 histone cluster 2 H2A family member a3 2 4
MIRT246320 HIST2H2AA4 histone cluster 2 H2A family member a4 2 4
MIRT248254 SP1 Sp1 transcription factor 2 2
MIRT257944 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT466973 STARD7 StAR related lipid transfer domain containing 7 2 4
MIRT492322 SETD1B SET domain containing 1B 2 2
MIRT496204 EFCAB1 EF-hand calcium binding domain 1 2 2
MIRT497568 CCR6 C-C motif chemokine receptor 6 2 2
MIRT502990 CCDC71L coiled-coil domain containing 71 like 2 8
MIRT508300 SIX5 SIX homeobox 5 2 4
MIRT522472 ZAK mitogen-activated protein kinase kinase kinase 20 2 2
MIRT525825 VIMP selenoprotein S 2 4
MIRT528154 BCL2L1 BCL2 like 1 2 2
MIRT532606 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT551302 RPRM reprimo, TP53 dependent G2 arrest mediator homolog 2 2
MIRT568777 FAM53C family with sequence similarity 53 member C 2 6
MIRT570896 METTL21A methyltransferase like 21A 2 2
MIRT570963 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT571167 ZNF85 zinc finger protein 85 2 2
MIRT576751 Tmem127 transmembrane protein 127 2 2
MIRT609854 DAZAP2 DAZ associated protein 2 2 2
MIRT627101 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT637060 PRKAG1 protein kinase AMP-activated non-catalytic subunit gamma 1 2 2
MIRT639423 PKP1 plakophilin 1 2 2
MIRT643208 TYW3 tRNA-yW synthesizing protein 3 homolog 2 4
MIRT646251 PRSS38 protease, serine 38 2 2
MIRT647145 CYP27C1 cytochrome P450 family 27 subfamily C member 1 2 2
MIRT647429 ZKSCAN2 zinc finger with KRAB and SCAN domains 2 2 2
MIRT650666 GAPDHP44 glyceraldehyde 3 phosphate dehydrogenase pseudogene 44 2 2
MIRT651816 USP49 ubiquitin specific peptidase 49 2 2
MIRT657376 HMGA1 high mobility group AT-hook 1 2 2
MIRT658105 FOXK1 forkhead box K1 2 2
MIRT658161 FCHSD1 FCH and double SH3 domains 1 2 2
MIRT662754 LRRC3C leucine rich repeat containing 3C 2 2
MIRT667209 NIPAL1 NIPA like domain containing 1 2 2
MIRT687003 RPL35 ribosomal protein L35 2 2
MIRT707057 NACC2 NACC family member 2 2 2
MIRT709048 MRO maestro 2 2
MIRT709054 MGAT5B mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B 2 2
MIRT709446 VWA2 von Willebrand factor A domain containing 2 2 2
MIRT709847 SNX12 sorting nexin 12 2 2
MIRT710790 IFNLR1 interferon lambda receptor 1 2 2
MIRT711696 GMPR guanosine monophosphate reductase 2 2
MIRT712462 KCNC3 potassium voltage-gated channel subfamily C member 3 2 2
MIRT713884 MOB3A MOB kinase activator 3A 2 2
MIRT715329 NTN1 netrin 1 2 2
MIRT715927 CHD4 chromodomain helicase DNA binding protein 4 2 2
MIRT716533 ATF5 activating transcription factor 5 2 2
MIRT716937 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT717007 MFSD6 major facilitator superfamily domain containing 6 2 2
MIRT719139 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT720853 MEF2D myocyte enhancer factor 2D 2 2
MIRT721484 LTB4R2 leukotriene B4 receptor 2 2 2
MIRT721517 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT722895 LRRC20 leucine rich repeat containing 20 2 2
MIRT723066 GGA1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 2 2
MIRT723086 INSIG1 insulin induced gene 1 2 2
MIRT723353 ASCL2 achaete-scute family bHLH transcription factor 2 2 2
MIRT723483 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT724576 NOTCH2 notch 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4749 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4749 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4749 Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-miR-4749-3p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-4749-3p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-4749-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-4749-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-4749-3p Cisplatin 5460033 NSC119875 approved resistant cell line (OVSAHO)
hsa-miR-4749-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (TOV-112D)

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