pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol ZNF639   
Synonyms ANC-2H01, ANC_2H01, ZASC1
Description zinc finger protein 639
Transcript NM_016331   
Expression
Putative miRNA Targets on ZNF639
3'UTR of ZNF639
(miRNA target sites are highlighted)
>ZNF639|NM_016331|3'UTR
   1 TTATTCTCTTTAACTTACAGAATGTTAGTTTAAAATAATAAATTCATCCTTTTTTTGGAGATGATTAAATGGATGATTGT
  81 AAACACAACTTATGAAATCTGCCTTTAACAAGTAACTTTTTTAAATTATAAAATTTTATTGGCATTGCTCCATTTTCTGT
 161 ATATAAATATATCTTTAATGTGGTATTTTCAATTGCGTGATAGTTTGTAGTTTCAACCACTCTTGGTGACTGTCATCCTG
 241 TTTCTTCCATATTCTCTGATTTCATGAATTGAAAAGAAACAAATGTATTGAAGAAGTGAGCTACAGTTTTCCTTCCTTAA
 321 CCATGGGTGCTAGTAACTTTTTAAAACTCAAGACAAGATTAGTTTTTTATGTGTGAAGTCATTAAATTATTACACGACCA
 401 GAACTAAAATGCAATATACAGTTAAGTCCACGGATACTCCCATTAATGAGAAATAACACTAGGAAGCCACTATTACAGGA
 481 AGAAAAGATTTGGTTTTCATGGCAGTCTGTTTTTTTAAAAAAAAATTTTTGAGCCACTATCTATTGTTGAATATTTTAAG
 561 ATGGGATGAGGGAGGAACTAATAAGGGCTTACACAATAAAAAATAACTATATCATAACTCATTCATAACTTGATGTTTCA
 641 TTTTCTGTTGAGGAACCATAAATTCATTCACAGACTTAATATTTTTTTCTTAGAGATGGTCTCGTTCTGTTGTCCAGGAT
 721 GGAGTGCAGTGGTTGATCATAGCTCCCGGGCTGTAGTCTCCCAGGCTCGAGCAATCCTCCCACTTCACCCTCCTGCATAG
 801 CTAGGACTACAGGCATGTGGCACCATGCCCGCTAAGTTTTTAAATTTCTTGTAGAGATGAGATCTCGCTATGTTGCCCAG
 881 GCCAGTCTCAAACTCCTGGACTCAAGCAATCCTCCCACCTTGGCCTTCCAAATCACTGGGATTATAGGCATGAGCCATTA
 961 TGCCTGACTCTTGCCCAAATTTCTGATGTCAAATTGTTCATTGACAGAAAACCCACTGAAGTATTTAAAGTTAGGAAGAT
1041 CTGGGAGATAGGGGTTGCTGGCATGAAAATGTATAACTTACAACATTTATTAATAAAATGATAAATTAGCATC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accacgUUUUCAUUAACACCAAAAa 5'
                |||||  ||| ||||||| 
Target 5' aggaagAAAAG--ATT-TGGTTTTc 3'
477 - 498 162.00 -7.70
2
miRNA  3' acCACGUUUUCAU-UA------ACACCAAAAa 5'
            || :| || || ||      |||||| || 
Target 5' ctGTATATAAATATATCTTTAATGTGGTATTt 3'
157 - 188 129.00 -6.80
3
miRNA  3' acCACGUUUU-CAUUA--ACACCAAaaa 5'
            || ||::| | |:|   ||||||   
Target 5' ttGTCCAGGATGGAGTGCAGTGGTTgat 3'
710 - 737 121.00 -10.13
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30516226 15 COSMIC
COSN31516426 15 COSMIC
COSN31546975 21 COSMIC
COSN2531686 49 COSMIC
COSN30534326 62 COSMIC
COSN25015632 70 COSMIC
COSN30582398 80 COSMIC
COSN30516506 83 COSMIC
COSN20090952 119 COSMIC
COSN30513695 204 COSMIC
COSN6755852 355 COSMIC
COSN24484046 518 COSMIC
COSN19517173 527 COSMIC
COSN9764985 612 COSMIC
COSN9536544 699 COSMIC
COSN26719610 871 COSMIC
COSN29800837 924 COSMIC
COSN25581586 1338 COSMIC
COSN29111946 1353 COSMIC
COSN28434319 1558 COSMIC
COSN19311567 1630 COSMIC
COSN31627502 2268 COSMIC
COSN27248422 2935 COSMIC
COSN20151453 3344 COSMIC
COSN5000925 3439 COSMIC
COSN9536545 3813 COSMIC
COSN26233187 3960 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1281976800 3 dbSNP
rs771918145 4 dbSNP
rs1032347590 7 dbSNP
rs755425842 8 dbSNP
rs1262744249 12 dbSNP
rs1474453448 12 dbSNP
rs1489865395 15 dbSNP
rs1221902095 20 dbSNP
rs1450494467 23 dbSNP
rs746613395 27 dbSNP
rs1414645446 41 dbSNP
rs1183236985 47 dbSNP
rs775104214 50 dbSNP
rs768244280 52 dbSNP
rs560501066 56 dbSNP
rs1283163361 57 dbSNP
rs1362025718 65 dbSNP
rs1211666297 67 dbSNP
rs1216014455 70 dbSNP
rs953789211 73 dbSNP
rs1007055582 78 dbSNP
rs1332489720 82 dbSNP
rs958135312 90 dbSNP
rs1292961580 92 dbSNP
rs1340958166 94 dbSNP
rs1334761852 104 dbSNP
rs1033180854 111 dbSNP
rs1388055839 112 dbSNP
rs1390783242 117 dbSNP
rs1325903954 118 dbSNP
rs1282111335 120 dbSNP
rs529687649 122 dbSNP
rs193256025 124 dbSNP
rs14182 133 dbSNP
rs989009848 136 dbSNP
rs913510685 137 dbSNP
rs1201242163 138 dbSNP
rs1024087378 139 dbSNP
rs777800258 150 dbSNP
rs528664265 152 dbSNP
rs971640503 161 dbSNP
rs1269815742 168 dbSNP
rs1205450861 174 dbSNP
rs1349648136 183 dbSNP
rs982476652 184 dbSNP
rs918416444 190 dbSNP
rs1371167603 193 dbSNP
rs76504646 197 dbSNP
rs1449033610 198 dbSNP
rs1439345421 201 dbSNP
rs1367913207 203 dbSNP
rs983959117 206 dbSNP
rs909602304 217 dbSNP
rs937439055 226 dbSNP
rs571829673 236 dbSNP
rs1394564594 240 dbSNP
rs1413324071 241 dbSNP
rs1171805474 243 dbSNP
rs1049645687 244 dbSNP
rs909701473 245 dbSNP
rs183719848 247 dbSNP
rs941195418 252 dbSNP
rs1036883694 254 dbSNP
rs551301991 255 dbSNP
rs1432313225 256 dbSNP
rs560740427 260 dbSNP
rs78092037 264 dbSNP
rs1279021975 271 dbSNP
rs900874805 275 dbSNP
rs1231505689 279 dbSNP
rs1364014840 280 dbSNP
rs1271354890 284 dbSNP
rs1430631538 287 dbSNP
rs1325065991 291 dbSNP
rs1336489167 294 dbSNP
rs1234565501 301 dbSNP
rs933577821 317 dbSNP
rs1311263221 319 dbSNP
rs1050746741 328 dbSNP
rs1390857370 334 dbSNP
rs368929346 338 dbSNP
rs1475008918 341 dbSNP
rs1371133778 343 dbSNP
rs1218615210 349 dbSNP
rs748476312 350 dbSNP
rs1256417305 355 dbSNP
rs1448615187 355 dbSNP
rs1483784529 358 dbSNP
rs553481216 359 dbSNP
rs1246199258 372 dbSNP
rs1214505797 377 dbSNP
rs1006636058 380 dbSNP
rs573227281 381 dbSNP
rs1286349456 388 dbSNP
rs1234333527 394 dbSNP
rs999623217 396 dbSNP
rs1411880683 398 dbSNP
rs1355197843 400 dbSNP
rs539137332 403 dbSNP
rs188714367 408 dbSNP
rs1394188389 412 dbSNP
rs1409370326 413 dbSNP
rs779063775 416 dbSNP
rs1166970067 418 dbSNP
rs558426187 426 dbSNP
rs746100857 427 dbSNP
rs1023636519 433 dbSNP
rs971170515 435 dbSNP
rs971581565 452 dbSNP
rs1185367040 471 dbSNP
rs772121831 473 dbSNP
rs1402882717 480 dbSNP
rs192288250 482 dbSNP
rs982143843 491 dbSNP
rs575399604 492 dbSNP
rs376993623 504 dbSNP
rs958986941 508 dbSNP
rs1334672421 510 dbSNP
rs1291755710 512 dbSNP
rs1230467069 517 dbSNP
rs199729349 517 dbSNP
rs554484484 518 dbSNP
rs909739686 526 dbSNP
rs146738339 527 dbSNP
rs975599955 530 dbSNP
rs13090122 537 dbSNP
rs1327914335 537 dbSNP
rs1338566273 538 dbSNP
rs1461845340 540 dbSNP
rs757055281 542 dbSNP
rs1162482640 544 dbSNP
rs940766778 546 dbSNP
rs1408332762 556 dbSNP
rs539872307 559 dbSNP
rs1176234099 562 dbSNP
rs769936636 563 dbSNP
rs560116461 566 dbSNP
rs1279862414 571 dbSNP
rs933610840 581 dbSNP
rs74284636 585 dbSNP
rs1226496640 595 dbSNP
rs902746041 596 dbSNP
rs1266378490 599 dbSNP
rs1271695317 604 dbSNP
rs1210919189 605 dbSNP
rs1317872371 610 dbSNP
rs1283910633 614 dbSNP
rs773431598 615 dbSNP
rs1369838902 619 dbSNP
rs78424433 623 dbSNP
rs1304172236 627 dbSNP
rs1441591489 628 dbSNP
rs1328549959 634 dbSNP
rs780895706 650 dbSNP
rs935616462 653 dbSNP
rs1053865139 660 dbSNP
rs1450025830 669 dbSNP
rs1157992173 682 dbSNP
rs1345555919 682 dbSNP
rs1398532296 694 dbSNP
rs894007049 697 dbSNP
rs1173670033 698 dbSNP
rs942384954 699 dbSNP
rs1012325059 700 dbSNP
rs1486431500 702 dbSNP
rs1009942660 704 dbSNP
rs1242702017 705 dbSNP
rs556945339 710 dbSNP
rs73043435 714 dbSNP
rs1233729622 718 dbSNP
rs906622002 729 dbSNP
rs1345781423 733 dbSNP
rs531178964 734 dbSNP
rs907415460 736 dbSNP
rs1216238345 740 dbSNP
rs1362413232 746 dbSNP
rs1287998299 748 dbSNP
rs1003522575 749 dbSNP
rs1376843942 751 dbSNP
rs184530071 753 dbSNP
rs1433604228 754 dbSNP
rs1392709360 766 dbSNP
rs1166404374 767 dbSNP
rs959002038 769 dbSNP
rs139276209 770 dbSNP
rs1016278751 775 dbSNP
rs1185095070 778 dbSNP
rs188842862 780 dbSNP
rs962083575 784 dbSNP
rs972183221 787 dbSNP
rs1005510999 789 dbSNP
rs1484763370 798 dbSNP
rs918418201 811 dbSNP
rs933842859 816 dbSNP
rs1016759772 821 dbSNP
rs1294610363 824 dbSNP
rs964185077 831 dbSNP
rs1287615760 832 dbSNP
rs975275554 852 dbSNP
rs1413726438 853 dbSNP
rs546979143 857 dbSNP
rs1355970104 858 dbSNP
rs1234003987 860 dbSNP
rs1299347653 861 dbSNP
rs566866261 862 dbSNP
rs1462966721 866 dbSNP
rs922321080 867 dbSNP
rs1354595072 868 dbSNP
rs777090646 871 dbSNP
rs1187508958 873 dbSNP
rs1474308683 874 dbSNP
rs1252790441 876 dbSNP
rs1196403570 877 dbSNP
rs376208387 888 dbSNP
rs1274208956 894 dbSNP
rs1439883326 895 dbSNP
rs761356990 897 dbSNP
rs911106783 908 dbSNP
rs955162432 910 dbSNP
rs1203402536 912 dbSNP
rs1273509770 914 dbSNP
rs1232334210 928 dbSNP
rs942648340 931 dbSNP
rs1308670441 935 dbSNP
rs143107199 936 dbSNP
rs1371982012 939 dbSNP
rs750106385 942 dbSNP
rs1475786184 950 dbSNP
rs1189454814 952 dbSNP
rs1463418400 955 dbSNP
rs762669118 957 dbSNP
rs568948278 958 dbSNP
rs1168118525 959 dbSNP
rs144754752 967 dbSNP
rs892842203 969 dbSNP
rs191652622 974 dbSNP
rs1182760522 993 dbSNP
rs373942509 1000 dbSNP
rs1198306484 1016 dbSNP
rs1176707133 1023 dbSNP
rs1469733411 1024 dbSNP
rs1375994203 1027 dbSNP
rs184498806 1031 dbSNP
rs148536763 1037 dbSNP
rs1053999100 1043 dbSNP
rs1353957567 1043 dbSNP
rs1262197569 1051 dbSNP
rs754066944 1052 dbSNP
rs141816447 1053 dbSNP
rs1045256116 1057 dbSNP
rs1306366976 1059 dbSNP
rs1459422398 1061 dbSNP
rs1372298583 1073 dbSNP
rs560453337 1074 dbSNP
rs1439213474 1077 dbSNP
rs1003651553 1079 dbSNP
rs1271019053 1082 dbSNP
rs1344521973 1085 dbSNP
rs11925064 1092 dbSNP
rs1175547070 1095 dbSNP
rs1454749048 1098 dbSNP
rs1253592227 1102 dbSNP
rs545579874 1107 dbSNP
rs1192932548 1110 dbSNP
rs1055979020 1111 dbSNP
rs562634919 1125 dbSNP
rs752668852 1126 dbSNP
rs1237219014 1131 dbSNP
rs1276941098 1135 dbSNP
rs189062830 1137 dbSNP
rs964011860 1139 dbSNP
rs1202695491 1145 dbSNP
rs1235916377 1145 dbSNP
rs1347929317 1163 dbSNP
rs1253530976 1164 dbSNP
rs1303400790 1180 dbSNP
rs997054852 1181 dbSNP
rs1231692640 1186 dbSNP
rs1016272202 1188 dbSNP
rs1441304302 1189 dbSNP
rs544786853 1190 dbSNP
rs1383139836 1192 dbSNP
rs1374460380 1199 dbSNP
rs1435485204 1200 dbSNP
rs955107921 1202 dbSNP
rs1167800493 1208 dbSNP
rs1395440548 1211 dbSNP
rs1436557177 1223 dbSNP
rs1030445844 1224 dbSNP
rs977180852 1227 dbSNP
rs924272607 1228 dbSNP
rs1395545116 1252 dbSNP
rs957004732 1256 dbSNP
rs1427681886 1257 dbSNP
rs1318992900 1266 dbSNP
rs1367621595 1268 dbSNP
rs1212575292 1270 dbSNP
rs1485746819 1274 dbSNP
rs989779012 1279 dbSNP
rs1199274535 1280 dbSNP
rs1433167686 1281 dbSNP
rs552355822 1294 dbSNP
rs1342023511 1298 dbSNP
rs1297407202 1300 dbSNP
rs915457076 1301 dbSNP
rs112769537 1302 dbSNP
rs948344783 1307 dbSNP
rs182449313 1309 dbSNP
rs1349025390 1311 dbSNP
rs1236126284 1313 dbSNP
rs1227202383 1321 dbSNP
rs1254796982 1325 dbSNP
rs1295406567 1330 dbSNP
rs1344866100 1333 dbSNP
rs1045621383 1338 dbSNP
rs1374935227 1345 dbSNP
rs1249338531 1351 dbSNP
rs1463311776 1352 dbSNP
rs1184842425 1353 dbSNP
rs1189055854 1353 dbSNP
rs1195717069 1353 dbSNP
rs1256220659 1353 dbSNP
rs1274403200 1353 dbSNP
rs1439010993 1353 dbSNP
rs35673654 1353 dbSNP
rs56151258 1353 dbSNP
rs868595957 1353 dbSNP
rs1187516688 1355 dbSNP
rs987011056 1367 dbSNP
rs1253436704 1369 dbSNP
rs1355009678 1370 dbSNP
rs1417895114 1370 dbSNP
rs397934030 1370 dbSNP
rs530376381 1370 dbSNP
rs1012411446 1371 dbSNP
rs1023879726 1372 dbSNP
rs55916170 1374 dbSNP
rs1173636253 1378 dbSNP
rs11925158 1378 dbSNP
rs1377011260 1379 dbSNP
rs1179284801 1380 dbSNP
rs11928771 1380 dbSNP
rs1454187526 1385 dbSNP
rs1159290778 1387 dbSNP
rs1390912156 1388 dbSNP
rs1412669494 1389 dbSNP
rs1161087894 1400 dbSNP
rs1470909839 1403 dbSNP
rs928192622 1407 dbSNP
rs1181719278 1408 dbSNP
rs911066696 1409 dbSNP
rs939406827 1415 dbSNP
rs964302507 1416 dbSNP
rs1047141345 1423 dbSNP
rs566749087 1425 dbSNP
rs1288074328 1426 dbSNP
rs1225671052 1430 dbSNP
rs532578142 1431 dbSNP
rs1278965139 1432 dbSNP
rs941318079 1433 dbSNP
rs914224843 1441 dbSNP
rs945739696 1444 dbSNP
rs1041381042 1451 dbSNP
rs1269523241 1452 dbSNP
rs1349074753 1454 dbSNP
rs537976982 1455 dbSNP
rs548692289 1456 dbSNP
rs779056297 1461 dbSNP
rs1207504097 1468 dbSNP
rs938450604 1470 dbSNP
rs1437257088 1472 dbSNP
rs1489223854 1478 dbSNP
rs1189252810 1483 dbSNP
rs1056326364 1486 dbSNP
rs552375448 1487 dbSNP
rs150620339 1497 dbSNP
rs1218220557 1500 dbSNP
rs1006878725 1501 dbSNP
rs1283799518 1503 dbSNP
rs745880207 1515 dbSNP
rs13096632 1516 dbSNP
rs1305608265 1519 dbSNP
rs993473460 1520 dbSNP
rs28463706 1521 dbSNP
rs1031346276 1525 dbSNP
rs957139315 1527 dbSNP
rs761629421 1538 dbSNP
rs1007647465 1543 dbSNP
rs1417399749 1551 dbSNP
rs1174831141 1558 dbSNP
rs990195318 1558 dbSNP
rs28522651 1559 dbSNP
rs187359258 1561 dbSNP
rs1390433127 1566 dbSNP
rs1475927515 1568 dbSNP
rs1392517217 1569 dbSNP
rs981078277 1571 dbSNP
rs1486701122 1572 dbSNP
rs554084651 1579 dbSNP
rs1281042539 1584 dbSNP
rs143518461 1585 dbSNP
rs990006410 1587 dbSNP
rs1349118028 1607 dbSNP
rs1362397882 1612 dbSNP
rs1277246405 1617 dbSNP
rs914466717 1625 dbSNP
rs1376750358 1630 dbSNP
rs1312914056 1631 dbSNP
rs939460769 1634 dbSNP
rs967278751 1637 dbSNP
rs977019948 1640 dbSNP
rs928321956 1643 dbSNP
rs1423286069 1650 dbSNP
rs982967198 1652 dbSNP
rs539444783 1659 dbSNP
rs554207617 1660 dbSNP
rs1476285367 1666 dbSNP
rs576170724 1669 dbSNP
rs1218913284 1671 dbSNP
rs916052682 1674 dbSNP
rs1206524247 1676 dbSNP
rs541954048 1685 dbSNP
rs561419431 1687 dbSNP
rs1037893759 1692 dbSNP
rs1356922798 1695 dbSNP
rs1395013206 1702 dbSNP
rs576740572 1703 dbSNP
rs1050990894 1709 dbSNP
rs1443474368 1711 dbSNP
rs1480819681 1716 dbSNP
rs1463320692 1723 dbSNP
rs368519336 1727 dbSNP
rs1206980700 1729 dbSNP
rs1422198503 1732 dbSNP
rs1249562558 1737 dbSNP
rs1458128892 1742 dbSNP
rs1472192917 1744 dbSNP
rs573181286 1751 dbSNP
rs575131545 1759 dbSNP
rs73043441 1761 dbSNP
rs1425828079 1762 dbSNP
rs1265723990 1769 dbSNP
rs1243538227 1773 dbSNP
rs892876349 1782 dbSNP
rs1319408102 1785 dbSNP
rs1011363309 1788 dbSNP
rs1392499309 1794 dbSNP
rs1023043933 1797 dbSNP
rs757317979 1802 dbSNP
rs768571688 1802 dbSNP
rs560875395 1806 dbSNP
rs981514948 1813 dbSNP
rs1395657297 1824 dbSNP
rs1349472004 1834 dbSNP
rs189242961 1839 dbSNP
rs893901017 1848 dbSNP
rs1159861897 1849 dbSNP
rs1310176979 1849 dbSNP
rs1439141371 1851 dbSNP
rs960960656 1855 dbSNP
rs1369248556 1856 dbSNP
rs1011333604 1859 dbSNP
rs1176686731 1865 dbSNP
rs1469659860 1866 dbSNP
rs1021420150 1872 dbSNP
rs1313016357 1891 dbSNP
rs1208899268 1898 dbSNP
rs1487271415 1906 dbSNP
rs202056243 1907 dbSNP
rs147239865 1908 dbSNP
rs1307794576 1910 dbSNP
rs147337505 1910 dbSNP
rs35803406 1911 dbSNP
rs76047738 1912 dbSNP
rs79001225 1917 dbSNP
rs151158169 1921 dbSNP
rs908733377 1922 dbSNP
rs941441090 1931 dbSNP
rs1385333779 1933 dbSNP
rs1387478063 1934 dbSNP
rs1289636966 1940 dbSNP
rs181692202 1943 dbSNP
rs1358638756 1946 dbSNP
rs921357468 1948 dbSNP
rs932629796 1951 dbSNP
rs1051067385 1959 dbSNP
rs912452899 1976 dbSNP
rs766098984 1984 dbSNP
rs1307668789 1986 dbSNP
rs934608981 1989 dbSNP
rs1230359108 1993 dbSNP
rs1216873502 1994 dbSNP
rs1272135857 2003 dbSNP
rs367979126 2008 dbSNP
rs1283181458 2010 dbSNP
rs1211475663 2012 dbSNP
rs1346269622 2013 dbSNP
rs1238159844 2016 dbSNP
rs562560224 2028 dbSNP
rs1231584341 2034 dbSNP
rs755442912 2036 dbSNP
rs1279090717 2040 dbSNP
rs531654485 2048 dbSNP
rs1011831150 2051 dbSNP
rs575059450 2056 dbSNP
rs1435389604 2059 dbSNP
rs1413363606 2061 dbSNP
rs1171920551 2064 dbSNP
rs1464410888 2068 dbSNP
rs1450251690 2078 dbSNP
rs185824599 2082 dbSNP
rs1477270260 2097 dbSNP
rs905627201 2104 dbSNP
rs1189506047 2107 dbSNP
rs1429727964 2109 dbSNP
rs941773266 2110 dbSNP
rs73043442 2111 dbSNP
rs547351295 2112 dbSNP
rs1259063793 2113 dbSNP
rs929543226 2116 dbSNP
rs1218274860 2150 dbSNP
rs1316344137 2155 dbSNP
rs1301695976 2159 dbSNP
rs1052051758 2161 dbSNP
rs1362235411 2167 dbSNP
rs1333447962 2175 dbSNP
rs1339929714 2175 dbSNP
rs146719458 2195 dbSNP
rs1004508503 2196 dbSNP
rs1402235954 2202 dbSNP
rs1295206018 2206 dbSNP
rs1171066223 2207 dbSNP
rs9846848 2214 dbSNP
rs1421076315 2216 dbSNP
rs139350583 2220 dbSNP
rs1166642842 2222 dbSNP
rs1472847679 2225 dbSNP
rs1039459177 2226 dbSNP
rs1234696886 2227 dbSNP
rs149901750 2228 dbSNP
rs114783315 2234 dbSNP
rs535539743 2241 dbSNP
rs921336904 2253 dbSNP
rs1208116740 2256 dbSNP
rs1275343498 2259 dbSNP
rs763886869 2261 dbSNP
rs144925296 2272 dbSNP
rs1190727373 2277 dbSNP
rs912587579 2279 dbSNP
rs934569558 2289 dbSNP
rs1242549262 2290 dbSNP
rs1379088632 2303 dbSNP
rs1449276851 2311 dbSNP
rs1173475196 2317 dbSNP
rs1052932091 2327 dbSNP
rs1331917005 2328 dbSNP
rs1445861868 2338 dbSNP
rs1397834132 2342 dbSNP
rs1325117541 2343 dbSNP
rs914474207 2347 dbSNP
rs1405549334 2353 dbSNP
rs190140518 2358 dbSNP
rs540849748 2360 dbSNP
rs750546088 2362 dbSNP
rs1044633509 2364 dbSNP
rs905598996 2375 dbSNP
rs1381543043 2376 dbSNP
rs1178553629 2377 dbSNP
rs1003058294 2381 dbSNP
rs112729477 2388 dbSNP
rs560542016 2390 dbSNP
rs1255215264 2391 dbSNP
rs1222631798 2394 dbSNP
rs1388719914 2396 dbSNP
rs1451208043 2398 dbSNP
rs577434001 2403 dbSNP
rs886141701 2431 dbSNP
rs1004560778 2433 dbSNP
rs1354500760 2435 dbSNP
rs1309962397 2441 dbSNP
rs1318161965 2445 dbSNP
rs1374423780 2447 dbSNP
rs1015815282 2448 dbSNP
rs960250160 2450 dbSNP
rs181099387 2452 dbSNP
rs1321165693 2457 dbSNP
rs1023061914 2468 dbSNP
rs1276325046 2474 dbSNP
rs995662705 2476 dbSNP
rs1028941237 2478 dbSNP
rs540269036 2483 dbSNP
rs1438343425 2484 dbSNP
rs758377638 2487 dbSNP
rs562497176 2514 dbSNP
rs1329899992 2521 dbSNP
rs912652794 2531 dbSNP
rs755399413 2532 dbSNP
rs1195581711 2538 dbSNP
rs1266496482 2542 dbSNP
rs988787875 2545 dbSNP
rs1285348522 2552 dbSNP
rs914465666 2554 dbSNP
rs950883110 2555 dbSNP
rs1351482397 2560 dbSNP
rs965742643 2563 dbSNP
rs979940741 2564 dbSNP
rs1477361246 2566 dbSNP
rs1366622010 2567 dbSNP
rs1272729150 2569 dbSNP
rs1340633623 2570 dbSNP
rs1401387271 2570 dbSNP
rs988063131 2574 dbSNP
rs912118603 2575 dbSNP
rs1177422292 2576 dbSNP
rs927157695 2580 dbSNP
rs9867380 2597 dbSNP
rs1196154931 2605 dbSNP
rs149059598 2609 dbSNP
rs561883494 2613 dbSNP
rs886192559 2614 dbSNP
rs940315290 2618 dbSNP
rs748452331 2621 dbSNP
rs1276198424 2622 dbSNP
rs796654009 2624 dbSNP
rs1347878605 2625 dbSNP
rs1042480243 2629 dbSNP
rs531295685 2632 dbSNP
rs996185173 2645 dbSNP
rs1447860298 2660 dbSNP
rs1435722275 2663 dbSNP
rs779148943 2664 dbSNP
rs889916174 2665 dbSNP
rs527802061 2681 dbSNP
rs895700499 2681 dbSNP
rs998624311 2681 dbSNP
rs547532419 2683 dbSNP
rs1230318662 2692 dbSNP
rs956135694 2694 dbSNP
rs369876667 2696 dbSNP
rs1328828626 2700 dbSNP
rs1022068062 2701 dbSNP
rs1323006222 2702 dbSNP
rs1210652500 2704 dbSNP
rs1312747810 2704 dbSNP
rs1227222011 2705 dbSNP
rs1377675439 2705 dbSNP
rs1292533996 2706 dbSNP
rs968660220 2708 dbSNP
rs980460085 2714 dbSNP
rs1221228944 2721 dbSNP
rs927241483 2732 dbSNP
rs1329562889 2733 dbSNP
rs938457145 2734 dbSNP
rs1369153053 2744 dbSNP
rs1164234343 2756 dbSNP
rs532681697 2757 dbSNP
rs186161983 2764 dbSNP
rs866687458 2765 dbSNP
rs1440094499 2770 dbSNP
rs1037355214 2788 dbSNP
rs1433959842 2789 dbSNP
rs1489285377 2794 dbSNP
rs898866459 2795 dbSNP
rs552425318 2796 dbSNP
rs562821063 2797 dbSNP
rs890053522 2799 dbSNP
rs111252281 2800 dbSNP
rs1307464315 2805 dbSNP
rs1388867469 2808 dbSNP
rs1019766878 2810 dbSNP
rs891862374 2811 dbSNP
rs1010774607 2815 dbSNP
rs772632655 2815 dbSNP
rs1160390424 2816 dbSNP
rs1420192557 2821 dbSNP
rs1245856412 2822 dbSNP
rs548484404 2826 dbSNP
rs1354435831 2835 dbSNP
rs1245701113 2836 dbSNP
rs1218012646 2837 dbSNP
rs1287486765 2837 dbSNP
rs1489638999 2837 dbSNP
rs549313818 2837 dbSNP
rs946526940 2837 dbSNP
rs1353686500 2845 dbSNP
rs550579209 2845 dbSNP
rs1275788305 2846 dbSNP
rs946743933 2847 dbSNP
rs551460733 2849 dbSNP
rs1403264970 2850 dbSNP
rs145175422 2852 dbSNP
rs535476871 2852 dbSNP
rs1399442660 2853 dbSNP
rs534391767 2854 dbSNP
rs1359896056 2855 dbSNP
rs1250478834 2856 dbSNP
rs555479984 2870 dbSNP
rs1021618580 2875 dbSNP
rs1174949613 2888 dbSNP
rs1188965069 2889 dbSNP
rs1264849554 2892 dbSNP
rs969090693 2905 dbSNP
rs1487675328 2907 dbSNP
rs1472221894 2909 dbSNP
rs182763588 2911 dbSNP
rs1391776103 2912 dbSNP
rs187997010 2913 dbSNP
rs554302970 2915 dbSNP
rs577371006 2918 dbSNP
rs1324697750 2923 dbSNP
rs538503679 2923 dbSNP
rs1316137980 2925 dbSNP
rs1167852797 2933 dbSNP
rs1402778996 2935 dbSNP
rs140834614 2935 dbSNP
rs77174373 2935 dbSNP
rs1302095134 2936 dbSNP
rs1468011086 2937 dbSNP
rs1425411387 2939 dbSNP
rs939443465 2941 dbSNP
rs1336173780 2944 dbSNP
rs1370781216 2955 dbSNP
rs1338991022 2957 dbSNP
rs1443450988 2959 dbSNP
rs546475447 2961 dbSNP
rs1256044177 2969 dbSNP
rs1056927551 2976 dbSNP
rs143010442 2977 dbSNP
rs1258959319 2989 dbSNP
rs1218172746 2990 dbSNP
rs992650264 2992 dbSNP
rs1012828851 2995 dbSNP
rs1044365018 2998 dbSNP
rs1341033436 2999 dbSNP
rs1226595105 3001 dbSNP
rs1251267436 3002 dbSNP
rs899097984 3007 dbSNP
rs1201678729 3009 dbSNP
rs1450258064 3010 dbSNP
rs1253458635 3013 dbSNP
rs1402130626 3015 dbSNP
rs112046441 3020 dbSNP
rs1460644213 3022 dbSNP
rs907735776 3027 dbSNP
rs1188784098 3030 dbSNP
rs1249707424 3032 dbSNP
rs961789951 3034 dbSNP
rs973596024 3037 dbSNP
rs1408974598 3047 dbSNP
rs1393723949 3050 dbSNP
rs576014724 3051 dbSNP
rs920358403 3060 dbSNP
rs931615401 3061 dbSNP
rs1368451749 3063 dbSNP
rs1467514709 3063 dbSNP
rs541852910 3074 dbSNP
rs77243697 3076 dbSNP
rs1400129299 3077 dbSNP
rs1025991595 3091 dbSNP
rs911459057 3095 dbSNP
rs527742017 3097 dbSNP
rs1469518252 3100 dbSNP
rs1041193515 3103 dbSNP
rs891997466 3104 dbSNP
rs1010411595 3105 dbSNP
rs868638303 3107 dbSNP
rs1378881413 3112 dbSNP
rs142855775 3125 dbSNP
rs1009101736 3127 dbSNP
rs1333664801 3131 dbSNP
rs547818255 3138 dbSNP
rs1332246950 3139 dbSNP
rs1236054881 3150 dbSNP
rs1253793778 3151 dbSNP
rs1001912974 3156 dbSNP
rs1034380491 3157 dbSNP
rs1322179007 3158 dbSNP
rs1405454914 3159 dbSNP
rs1162253177 3162 dbSNP
rs965275117 3164 dbSNP
rs959929566 3167 dbSNP
rs975005120 3168 dbSNP
rs1248735387 3174 dbSNP
rs1014221637 3176 dbSNP
rs1014759401 3179 dbSNP
rs1220198500 3191 dbSNP
rs961840992 3195 dbSNP
rs973277928 3196 dbSNP
rs1286614274 3198 dbSNP
rs920308619 3203 dbSNP
rs953182503 3206 dbSNP
rs986180483 3207 dbSNP
rs1276250164 3209 dbSNP
rs541168703 3210 dbSNP
rs376947842 3211 dbSNP
rs142620039 3212 dbSNP
rs1041246485 3215 dbSNP
rs1361810841 3216 dbSNP
rs146917868 3218 dbSNP
rs1399335909 3220 dbSNP
rs1480163294 3229 dbSNP
rs913489345 3230 dbSNP
rs1391115058 3249 dbSNP
rs1455841506 3250 dbSNP
rs570828623 3262 dbSNP
rs762605288 3264 dbSNP
rs1391883519 3266 dbSNP
rs1488656830 3267 dbSNP
rs946184305 3269 dbSNP
rs9824117 3289 dbSNP
rs1044262382 3290 dbSNP
rs899045554 3295 dbSNP
rs1345386483 3300 dbSNP
rs904593210 3308 dbSNP
rs1001652253 3312 dbSNP
rs1047426137 3313 dbSNP
rs569994657 3318 dbSNP
rs1280968524 3330 dbSNP
rs1219997483 3332 dbSNP
rs1340537697 3338 dbSNP
rs1288802219 3340 dbSNP
rs1353530697 3343 dbSNP
rs529227082 3345 dbSNP
rs1228473823 3346 dbSNP
rs1429191839 3346 dbSNP
rs775450586 3346 dbSNP
rs1469588315 3347 dbSNP
rs760344565 3354 dbSNP
rs1478190173 3358 dbSNP
rs1326707030 3361 dbSNP
rs895855951 3363 dbSNP
rs538959693 3370 dbSNP
rs753692838 3373 dbSNP
rs1239100086 3374 dbSNP
rs548966112 3375 dbSNP
rs961998616 3377 dbSNP
rs1207793936 3381 dbSNP
rs758559083 3385 dbSNP
rs10460886 3386 dbSNP
rs1183072917 3390 dbSNP
rs1027511435 3392 dbSNP
rs1318039261 3393 dbSNP
rs1294175231 3398 dbSNP
rs139233936 3401 dbSNP
rs1417610245 3407 dbSNP
rs557616896 3408 dbSNP
rs1030954597 3409 dbSNP
rs377408225 3411 dbSNP
rs961022687 3420 dbSNP
rs1018657186 3421 dbSNP
rs1425628849 3428 dbSNP
rs992239179 3429 dbSNP
rs965643683 3431 dbSNP
rs987785419 3435 dbSNP
rs1200166280 3438 dbSNP
rs913458050 3439 dbSNP
rs946349537 3440 dbSNP
rs1201914894 3441 dbSNP
rs571017871 3442 dbSNP
rs979890783 3451 dbSNP
rs979321850 3453 dbSNP
rs1245827951 3454 dbSNP
rs930538131 3456 dbSNP
rs755205250 3465 dbSNP
rs1264642797 3471 dbSNP
rs796714283 3472 dbSNP
rs937416506 3474 dbSNP
rs886086045 3475 dbSNP
rs944348841 3481 dbSNP
rs1350477188 3483 dbSNP
rs1164168672 3484 dbSNP
rs59745384 3490 dbSNP
rs895908166 3494 dbSNP
rs950000309 3496 dbSNP
rs1249456514 3501 dbSNP
rs1242349640 3502 dbSNP
rs1290753915 3503 dbSNP
rs556420831 3504 dbSNP
rs897717239 3508 dbSNP
rs1357973236 3510 dbSNP
rs994802925 3511 dbSNP
rs1288775733 3512 dbSNP
rs1240283182 3514 dbSNP
rs1316638979 3520 dbSNP
rs576290673 3526 dbSNP
rs1388704033 3527 dbSNP
rs995885831 3534 dbSNP
rs1302684289 3536 dbSNP
rs888919207 3538 dbSNP
rs542124785 3543 dbSNP
rs1007349204 3544 dbSNP
rs1363714305 3545 dbSNP
rs1454135214 3552 dbSNP
rs555684051 3552 dbSNP
rs150457219 3563 dbSNP
rs1156518898 3565 dbSNP
rs767954438 3568 dbSNP
rs1162122631 3569 dbSNP
rs1198143042 3587 dbSNP
rs1031695286 3588 dbSNP
rs191008784 3590 dbSNP
rs865978696 3595 dbSNP
rs564455827 3596 dbSNP
rs1013969073 3598 dbSNP
rs1259282748 3599 dbSNP
rs1020642797 3605 dbSNP
rs533128079 3618 dbSNP
rs979072135 3619 dbSNP
rs1353215623 3622 dbSNP
rs926208685 3622 dbSNP
rs1440857867 3630 dbSNP
rs937488277 3633 dbSNP
rs1380976018 3635 dbSNP
rs138196439 3636 dbSNP
rs1393917511 3640 dbSNP
rs748554557 3641 dbSNP
rs974188875 3644 dbSNP
rs1314176239 3647 dbSNP
rs1384131500 3647 dbSNP
rs917323345 3649 dbSNP
rs1467382198 3654 dbSNP
rs1365624251 3661 dbSNP
rs920413159 3661 dbSNP
rs1479171674 3664 dbSNP
rs950135356 3666 dbSNP
rs1194548226 3678 dbSNP
rs1036359790 3682 dbSNP
rs951881894 3688 dbSNP
rs1202621326 3689 dbSNP
rs1462038083 3690 dbSNP
rs538085634 3695 dbSNP
rs1201937408 3700 dbSNP
rs1320138737 3702 dbSNP
rs930646661 3705 dbSNP
rs1226738056 3708 dbSNP
rs907756704 3709 dbSNP
rs1048931685 3713 dbSNP
rs944648702 3714 dbSNP
rs558598271 3716 dbSNP
rs1272421578 3718 dbSNP
rs1306794626 3719 dbSNP
rs1203923196 3726 dbSNP
rs149592349 3728 dbSNP
rs1173967035 3730 dbSNP
rs1461041950 3731 dbSNP
rs144225117 3734 dbSNP
rs1190154885 3736 dbSNP
rs1445629064 3745 dbSNP
rs1242881323 3746 dbSNP
rs1007319484 3747 dbSNP
rs1484385834 3750 dbSNP
rs1181943035 3757 dbSNP
rs76769805 3759 dbSNP
rs200014204 3760 dbSNP
rs35292037 3763 dbSNP
rs901583420 3763 dbSNP
rs201216716 3764 dbSNP
rs201943871 3765 dbSNP
rs1061750 3769 dbSNP
rs1248029423 3776 dbSNP
rs528116947 3780 dbSNP
rs138828134 3786 dbSNP
rs1009311837 3789 dbSNP
rs1043486987 3799 dbSNP
rs1337234665 3805 dbSNP
rs747684754 3805 dbSNP
rs1417996517 3806 dbSNP
rs373980536 3808 dbSNP
rs141844205 3810 dbSNP
rs1409892553 3822 dbSNP
rs1393610608 3824 dbSNP
rs756413024 3827 dbSNP
rs1021033425 3834 dbSNP
rs1385120228 3835 dbSNP
rs536773970 3840 dbSNP
rs1000944913 3841 dbSNP
rs183072274 3853 dbSNP
rs1360367919 3865 dbSNP
rs999626384 3867 dbSNP
rs1181274020 3881 dbSNP
rs1467945106 3884 dbSNP
rs1269494032 3893 dbSNP
rs1335712860 3898 dbSNP
rs778271926 3903 dbSNP
rs958970354 3905 dbSNP
rs1437031456 3906 dbSNP
rs549919127 3915 dbSNP
rs1361253998 3921 dbSNP
rs10460887 3926 dbSNP
rs1302117214 3927 dbSNP
rs1061751 3930 dbSNP
rs1304468687 3933 dbSNP
rs1405020526 3938 dbSNP
rs971461804 3946 dbSNP
rs1301771535 3949 dbSNP
rs1262765308 3953 dbSNP
rs1465460452 3959 dbSNP
rs1211044685 3963 dbSNP
rs972139759 3964 dbSNP
rs969406404 3965 dbSNP
rs995571890 3973 dbSNP
rs1468841619 3976 dbSNP
rs919337492 3978 dbSNP
rs1475403204 3981 dbSNP
rs1490203884 3990 dbSNP
rs555825469 3996 dbSNP
rs1192253801 4004 dbSNP
rs930637435 4012 dbSNP
rs771406983 4014 dbSNP
rs1049542867 4025 dbSNP
rs1479184693 4027 dbSNP
rs543267216 4031 dbSNP
rs951456725 4033 dbSNP
rs572388077 4034 dbSNP
rs943313730 4039 dbSNP
rs1344248928 4049 dbSNP
rs534736430 4053 dbSNP
rs1344349914 4054 dbSNP
rs1433442499 4062 dbSNP
rs1346284715 4065 dbSNP
rs1436878872 4071 dbSNP
rs1040181845 4076 dbSNP
rs901720648 4082 dbSNP
rs558153645 4084 dbSNP
rs1221767495 4100 dbSNP
rs966353896 4101 dbSNP
rs1480155113 4111 dbSNP
rs1009365649 4118 dbSNP
rs1042102130 4126 dbSNP
rs903620664 4130 dbSNP
rs578118697 4134 dbSNP
rs1242624354 4146 dbSNP
rs1033784113 4151 dbSNP
rs1214874460 4157 dbSNP
rs1043393344 4158 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' accacgUUUUCAUUAACACCAAAAa 5'
                |||||  ||| ||||||| 
Target 5' ----agAAAAG--AUU-UGGUUUUc 3'
1 - 18
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000326361.3 | 3UTR | AGAAAAGAUUUGGUUUUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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