pre-miRNA Information
pre-miRNA hsa-mir-1303   
Genomic Coordinates chr5: 154685776 - 154685861
Synonyms MIRN1303, hsa-mir-1303, MIR1303
Description Homo sapiens miR-1303 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1303
Sequence 52| UUUAGAGACGGGGUCUUGCUCU |73
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 5 + 154685830 23291724, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs370437195 6 dbSNP
rs1195001383 7 dbSNP
rs546614687 8 dbSNP
rs762579883 9 dbSNP
rs766041486 10 dbSNP
rs751079975 12 dbSNP
rs888516744 13 dbSNP
rs566454487 14 dbSNP
rs766973220 15 dbSNP
rs1474274822 17 dbSNP
rs753222192 18 dbSNP
rs1230907999 19 dbSNP
rs756552638 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol LYPLA1   
Synonyms APT-1, APT1, LPL-I, LPL1, hAPT1
Description lysophospholipase I
Transcript NM_006330   
Expression
Putative miRNA Targets on LYPLA1
3'UTR of LYPLA1
(miRNA target sites are highlighted)
>LYPLA1|NM_006330|3'UTR
   1 CGTCACTAAGAGGCCTTGTGTAGAAGTACACCAGCATCATTGTAGTAGAGTGTAAACCTTTTCCCATGCCCAGTCTTCAA
  81 ATTTCTAATGTTTTGCAGTGTTAAAATGTTTTGCAAATACATGCCAATAACACAGATCAAATAATATCTCCTCATGAGAA
 161 ATTTATGATCTTTTAAGTTTCTATACATGTATTCTTATAAGACGACCCAGGATCTACTATATTAGAATAGATGAAGCAGG
 241 TAGCTTCTTTTTTCTCAAATGTAATTCAGCAAAATAATACAGTACTGCCACCAGATTTTTTATTACATCATTTGAAAATT
 321 AGCAGTATGCTTAATGAAAATTTGTTCAGGTATAAATGAGCAGTTAAGATATAAACAATTTATGCATGCTGTGACTTAGT
 401 CTATGGATTTATTCCAAAATTGCTTAGTCACCATGCAGTGTCTGTATTTTTATATATGTGTTCATATATACATAATGATT
 481 ATAATACATAATAAGAATGAGGTGGTATTACATTATTCCTAATAATAGGGATAATGCTGTTTATTGTCAAGAAAAAGTAA
 561 AATCGTTCTCTTCAATTAATGGCCCTTTTATTTTGGGACCAGGCTTTTATTTTCCCTGATATTATTTCTATTTAATACTC
 641 TTTTCTCTCAAGAAAAAAAAAAAAGTTTGTTTTTTCTTTATTGTCCTTCATAGCAGGCCAAGTATTGCCTCTCTGCAATA
 721 GACAGCTACTGTCAATACATGCTGTAATTTGACATTCTGGGTCACAGATATAAGGTATTTAAAATCTATTTATGCTTTAT
 801 AGAGAAACCAGACATTAAAACTTCATGCACTACTTATTTCGAATTACTGTACCTTATCCAAATTTACACCTAGCTATTAG
 881 GATCTTCAACCCAGGTAACAGGAATAATTCTGTGGTTTCATTTTTCTGTAAACAACTGAAAGAATAATTAGATCATATTC
 961 TAGTATGTTCTGAAATATCTTTAAGACTGATCTTAAAAACTAACTTCTAAGATGATTTCATCTTCTCATAGTATAGAGTT
1041 TACTTTGTACACGTTTGAAACCAACTACTGTAGAAGATGAGGAATCTATTGTAATTTTTTGCTTTATTTTCATCTGCCAG
1121 TGGACTTATTTGAAATTTTCACTTTAGTCAAATTATTTTTTGTATTAGTTTTTGATGCAGACATAAAAATAGCAATCATT
1201 TTAAATTGTCAAAATTTCCAGATTACTGGTAAAAATTATTTGAAAACAAACTTATGGGTAATAAAGGCTAGTCAGAACCC
1281 TATACCATAAAGTGTAGTTACCATACAGATTAATATGTAGCAAAAATGTATGCTTGATATTTCTCAACTGTGTTAATTTT
1361 TCTGCTGTATTCCAGCTGACCAAAACAATATTAAGAATGCATCTTTATAAATGGGTGCTAATTGATAATGGAAATAATTT
1441 AGTAATGGACTATACAGGATGTTAATAATGAAGCCATATGTTTATGTCTGGATTTAAAAATTTTAAACAATCATTTACTA
1521 TGTCATTTTTCTTTACCTTGAAGAACATAAACTGTTATTTCACTTCTACAAATCAGCAAGATATTATTTATGGCAAGAAA
1601 TATTCCATTGAAATATTGTGCTGTAACATGGGAAAGTGTAAATGTTTTTCATGGTTTCTATCAATGTGAAATAAAATTTA
1681 ATTCTGACTTTTCTGTGAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucucGUUCUGGGG--CAGAGAUUu 5'
              | || |::|   |:||||| 
Target 5' atgcCCAGTCTTCAAATTTCTAAt 3'
66 - 89 132.00 -8.46
2
miRNA  3' ucUCGUUCUGGGGC-----AGAGAUUu 5'
            ||:| | ::|:|     |||:||| 
Target 5' ctAGTATG-TTCTGAAATATCTTTAAg 3'
960 - 985 131.00 -8.60
3
miRNA  3' ucUCGUUCUGGGGCAGAGAUuu 5'
            | :|||| : | |||:||  
Target 5' atATTAAGAATGCATCTTTAta 3'
1388 - 1409 124.00 -6.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31498040 48 COSMIC
COSN31613835 58 COSMIC
COSN30543086 102 COSMIC
COSN30493653 105 COSMIC
COSN30138327 124 COSMIC
COSN31507735 131 COSMIC
COSN30152853 150 COSMIC
COSN30511085 160 COSMIC
COSN14346979 163 COSMIC
COSN31573633 195 COSMIC
COSN31610414 208 COSMIC
COSN32055926 381 COSMIC
COSN23891189 432 COSMIC
COSN23967720 459 COSMIC
COSN8090872 621 COSMIC
COSN20105487 653 COSMIC
COSN20091805 667 COSMIC
COSN32057449 782 COSMIC
COSN24258948 846 COSMIC
COSN28505432 919 COSMIC
COSN4923788 1060 COSMIC
COSN23420319 1523 COSMIC
COSN31518866 1548 COSMIC
COSN31591986 1550 COSMIC
COSN24917594 1557 COSMIC
COSN19212105 1558 COSMIC
COSN26667181 1607 COSMIC
COSN5113001 1625 COSMIC
COSN6698970 1647 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs775768892 1 dbSNP
rs1421400786 2 dbSNP
rs1166935138 9 dbSNP
rs1165939445 12 dbSNP
rs1364223520 14 dbSNP
rs562054386 15 dbSNP
rs1331243390 18 dbSNP
rs1418461169 22 dbSNP
rs199878046 25 dbSNP
rs771080578 32 dbSNP
rs1474278302 34 dbSNP
rs975600729 40 dbSNP
rs1236914444 42 dbSNP
rs763152302 46 dbSNP
rs748309283 49 dbSNP
rs776587983 51 dbSNP
rs1228814180 65 dbSNP
rs962889633 69 dbSNP
rs1449880949 74 dbSNP
rs1290811362 81 dbSNP
rs1381396771 85 dbSNP
rs192519511 87 dbSNP
rs765206207 88 dbSNP
rs1186780936 96 dbSNP
rs533367365 104 dbSNP
rs1450370613 108 dbSNP
rs1183348481 113 dbSNP
rs545933796 125 dbSNP
rs1044604 126 dbSNP
rs1164272247 131 dbSNP
rs1014671901 133 dbSNP
rs1399560385 135 dbSNP
rs894524975 140 dbSNP
rs1400362648 142 dbSNP
rs1435422731 154 dbSNP
rs1386144435 158 dbSNP
rs1314094193 160 dbSNP
rs1185653325 167 dbSNP
rs1442921732 168 dbSNP
rs1284660785 171 dbSNP
rs1056314979 173 dbSNP
rs1206871054 190 dbSNP
rs1270151419 196 dbSNP
rs937822946 197 dbSNP
rs903711503 203 dbSNP
rs1254336888 204 dbSNP
rs1444428729 205 dbSNP
rs1188703636 219 dbSNP
rs1043651474 224 dbSNP
rs945246099 232 dbSNP
rs866954760 246 dbSNP
rs1240742293 248 dbSNP
rs765758869 268 dbSNP
rs1215584698 273 dbSNP
rs1360582449 274 dbSNP
rs1293574055 276 dbSNP
rs1413606350 276 dbSNP
rs1243302484 280 dbSNP
rs1301841504 282 dbSNP
rs190236107 285 dbSNP
rs1297609011 286 dbSNP
rs986450006 290 dbSNP
rs777355617 292 dbSNP
rs1335075026 302 dbSNP
rs1359713797 303 dbSNP
rs1288191562 304 dbSNP
rs1226564988 326 dbSNP
rs184538377 327 dbSNP
rs1329854985 344 dbSNP
rs1367195007 348 dbSNP
rs921019543 360 dbSNP
rs572540172 367 dbSNP
rs975158747 376 dbSNP
rs1422907483 381 dbSNP
rs1384723844 383 dbSNP
rs1185058988 403 dbSNP
rs1253171160 412 dbSNP
rs556035881 420 dbSNP
rs35038027 432 dbSNP
rs564772634 442 dbSNP
rs962840311 442 dbSNP
rs1467302570 444 dbSNP
rs1430363106 452 dbSNP
rs1292446127 453 dbSNP
rs1172930596 457 dbSNP
rs4486181 459 dbSNP
rs1451637737 470 dbSNP
rs1309717211 473 dbSNP
rs1186440059 477 dbSNP
rs1351060969 482 dbSNP
rs1490631861 484 dbSNP
rs1386245456 489 dbSNP
rs11549454 491 dbSNP
rs1271423519 491 dbSNP
rs147351450 495 dbSNP
rs11549447 496 dbSNP
rs1490071769 498 dbSNP
rs1251102027 499 dbSNP
rs1251402076 507 dbSNP
rs1340396248 507 dbSNP
rs1275922728 513 dbSNP
rs1229034404 518 dbSNP
rs982933631 522 dbSNP
rs1190099148 530 dbSNP
rs1294845559 543 dbSNP
rs1434536564 554 dbSNP
rs11549451 555 dbSNP
rs1219680812 557 dbSNP
rs1199043606 560 dbSNP
rs527252922 564 dbSNP
rs1301024004 565 dbSNP
rs1403360772 568 dbSNP
rs951591643 582 dbSNP
rs1035754033 583 dbSNP
rs1298930766 590 dbSNP
rs1457391601 598 dbSNP
rs1291847158 603 dbSNP
rs1369907968 609 dbSNP
rs8822 612 dbSNP
rs1371391325 614 dbSNP
rs1024984015 615 dbSNP
rs1231029824 617 dbSNP
rs1481011558 622 dbSNP
rs1359330135 634 dbSNP
rs1431943049 636 dbSNP
rs1220087892 645 dbSNP
rs541857630 647 dbSNP
rs1480299776 648 dbSNP
rs1250843583 649 dbSNP
rs1246991675 651 dbSNP
rs1197175600 652 dbSNP
rs576050709 653 dbSNP
rs1250202973 654 dbSNP
rs1390622395 660 dbSNP
rs1162520256 665 dbSNP
rs1297529533 665 dbSNP
rs1204262895 667 dbSNP
rs1458437789 679 dbSNP
rs192214032 680 dbSNP
rs1281276404 681 dbSNP
rs11549452 682 dbSNP
rs894504404 684 dbSNP
rs1437616197 692 dbSNP
rs4475455 697 dbSNP
rs1034419684 702 dbSNP
rs1308046601 711 dbSNP
rs544979371 716 dbSNP
rs4310181 717 dbSNP
rs1322890072 731 dbSNP
rs1233335544 737 dbSNP
rs1394425587 750 dbSNP
rs1463260702 751 dbSNP
rs904619750 760 dbSNP
rs1248267339 774 dbSNP
rs1470599489 778 dbSNP
rs539425859 788 dbSNP
rs1415835868 800 dbSNP
rs1174860407 801 dbSNP
rs1158502931 809 dbSNP
rs1409933491 817 dbSNP
rs1469668399 821 dbSNP
rs1009412724 825 dbSNP
rs1183545866 829 dbSNP
rs570970984 838 dbSNP
rs1249241699 840 dbSNP
rs1051493045 841 dbSNP
rs547563001 847 dbSNP
rs756472111 851 dbSNP
rs1287156013 852 dbSNP
rs1326375515 856 dbSNP
rs1229711827 861 dbSNP
rs1284460298 870 dbSNP
rs920960081 872 dbSNP
rs1039360548 873 dbSNP
rs941092263 876 dbSNP
rs909640429 885 dbSNP
rs1181277159 890 dbSNP
rs1249543848 891 dbSNP
rs1473583582 892 dbSNP
rs372949634 896 dbSNP
rs1160036768 902 dbSNP
rs796621530 919 dbSNP
rs1241484761 928 dbSNP
rs1334156049 935 dbSNP
rs1178676430 936 dbSNP
rs1308768361 945 dbSNP
rs1453519558 951 dbSNP
rs1409606088 960 dbSNP
rs982878067 973 dbSNP
rs951664509 976 dbSNP
rs1385077068 978 dbSNP
rs1279678899 979 dbSNP
rs917502116 982 dbSNP
rs533998652 989 dbSNP
rs1280301461 992 dbSNP
rs1348251894 995 dbSNP
rs1204202387 999 dbSNP
rs1272332190 1000 dbSNP
rs750303091 1000 dbSNP
rs1182596239 1007 dbSNP
rs1246265078 1034 dbSNP
rs1477161728 1036 dbSNP
rs1193068905 1037 dbSNP
rs1386175472 1037 dbSNP
rs1034735562 1042 dbSNP
rs1167136086 1050 dbSNP
rs568113753 1052 dbSNP
rs866012516 1053 dbSNP
rs1328941943 1060 dbSNP
rs1452050634 1070 dbSNP
rs188380158 1071 dbSNP
rs968749435 1073 dbSNP
rs1276200148 1076 dbSNP
rs1426031896 1078 dbSNP
rs1371313925 1082 dbSNP
rs772786795 1085 dbSNP
rs1227352867 1086 dbSNP
rs1295197715 1094 dbSNP
rs1020416029 1107 dbSNP
rs1196381360 1110 dbSNP
rs769077634 1121 dbSNP
rs1009401529 1129 dbSNP
rs1223896493 1141 dbSNP
rs749642646 1145 dbSNP
rs1051010980 1147 dbSNP
rs1447466525 1150 dbSNP
rs1392488254 1151 dbSNP
rs1475947590 1153 dbSNP
rs1163124975 1155 dbSNP
rs1263607047 1168 dbSNP
rs531599325 1179 dbSNP
rs1403055485 1180 dbSNP
rs562758683 1182 dbSNP
rs1203213887 1186 dbSNP
rs552232196 1188 dbSNP
rs1433985775 1190 dbSNP
rs1318294532 1195 dbSNP
rs576039248 1199 dbSNP
rs1367013400 1200 dbSNP
rs1227905609 1208 dbSNP
rs899767846 1212 dbSNP
rs1285660940 1219 dbSNP
rs532010339 1228 dbSNP
rs1354202257 1230 dbSNP
rs775914137 1252 dbSNP
rs556239055 1255 dbSNP
rs182622912 1259 dbSNP
rs1206985962 1262 dbSNP
rs1250148179 1268 dbSNP
rs148161630 1275 dbSNP
rs561918258 1285 dbSNP
rs192311453 1287 dbSNP
rs1367199455 1289 dbSNP
rs930140010 1292 dbSNP
rs1166454356 1294 dbSNP
rs1418036177 1319 dbSNP
rs187504210 1321 dbSNP
rs757466870 1323 dbSNP
rs1390413713 1326 dbSNP
rs1320819019 1328 dbSNP
rs959187430 1341 dbSNP
rs1338604909 1342 dbSNP
rs1450206706 1358 dbSNP
rs1293835329 1364 dbSNP
rs927532358 1379 dbSNP
rs781350728 1381 dbSNP
rs1226673569 1386 dbSNP
rs1270201514 1389 dbSNP
rs867661122 1391 dbSNP
rs1200213815 1392 dbSNP
rs1351719260 1392 dbSNP
rs1254580602 1398 dbSNP
rs11549455 1405 dbSNP
rs978751673 1417 dbSNP
rs1380955632 1418 dbSNP
rs577115529 1422 dbSNP
rs1471952195 1451 dbSNP
rs6473905 1452 dbSNP
rs1426087586 1462 dbSNP
rs1010766201 1467 dbSNP
rs1171776805 1479 dbSNP
rs1399710418 1481 dbSNP
rs954832948 1483 dbSNP
rs1313359403 1498 dbSNP
rs1162320934 1508 dbSNP
rs1349825388 1513 dbSNP
rs1408040595 1517 dbSNP
rs1475441008 1520 dbSNP
rs182862441 1521 dbSNP
rs1044691 1531 dbSNP
rs1446269233 1537 dbSNP
rs1254491664 1539 dbSNP
rs1269260710 1544 dbSNP
rs1223544902 1550 dbSNP
rs1490888354 1556 dbSNP
rs1212077924 1568 dbSNP
rs1274502225 1571 dbSNP
rs1289834603 1576 dbSNP
rs778134971 1581 dbSNP
rs899715050 1587 dbSNP
rs868653963 1590 dbSNP
rs559601260 1593 dbSNP
rs1018179125 1595 dbSNP
rs1419156720 1600 dbSNP
rs1197647649 1602 dbSNP
rs1375593456 1615 dbSNP
rs143675656 1616 dbSNP
rs1174068143 1628 dbSNP
rs888133850 1630 dbSNP
rs1272491045 1632 dbSNP
rs1046784272 1638 dbSNP
rs1225806904 1641 dbSNP
rs1173074954 1650 dbSNP
rs1397224275 1652 dbSNP
rs929686711 1660 dbSNP
rs1299409367 1661 dbSNP
rs1340305602 1664 dbSNP
rs1373512607 1674 dbSNP
rs1429420772 1676 dbSNP
rs534005903 1681 dbSNP
rs1235444336 1686 dbSNP
rs1304087275 1691 dbSNP
rs191070722 1695 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucUCGUUCUGGGGCAGAGAuuu 5'
            :|::| |||||||||||   
Target 5' auGGUGAAACCCCGUCUCU--- 3'
5 - 23
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000316963.3 | 3UTR | AGUAUGGUGAAACCCCGUCUCUACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000316963.3 | 3UTR | CAGUAUGGUGAAACCCCGUCUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE32688 Pancreatic cancer -0.396 1.2e-2 -0.429 7.1e-3 32 Click to see details
GSE42095 Differentiated embryonic stem cells 0.456 1.4e-2 0.499 7.7e-3 23 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.22 1.5e-1 -0.059 3.9e-1 25 Click to see details
GSE38226 Liver fibrosis -0.214 1.8e-1 -0.032 4.5e-1 21 Click to see details
GSE28260 Renal cortex and medulla -0.203 2.5e-1 -0.071 4.1e-1 13 Click to see details
GSE28544 Breast cancer -0.127 2.8e-1 -0.047 4.1e-1 24 Click to see details
GSE26953 Aortic valvular endothelial cells 0.099 3.2e-1 0.183 2.0e-1 24 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
186 hsa-miR-1303 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035871 SOAT1 sterol O-acyltransferase 1 1 1
MIRT035872 FHOD3 formin homology 2 domain containing 3 1 1
MIRT035873 RPL7A ribosomal protein L7a 1 1
MIRT035874 NCAPD2 non-SMC condensin I complex subunit D2 1 1
MIRT035875 RPS8 ribosomal protein S8 1 1
MIRT035876 AHNAK AHNAK nucleoprotein 1 1
MIRT035877 ACTB actin beta 1 1
MIRT035878 DEF8 differentially expressed in FDCP 8 homolog 1 1
MIRT035879 MET MET proto-oncogene, receptor tyrosine kinase 1 1
MIRT035880 MED13 mediator complex subunit 13 1 1
MIRT035881 FAT3 FAT atypical cadherin 3 1 1
MIRT035882 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 1 1
MIRT035883 RPS16 ribosomal protein S16 1 1
MIRT035884 CDK6 cyclin dependent kinase 6 1 1
MIRT035885 GEMIN5 gem nuclear organelle associated protein 5 1 1
MIRT035886 PITRM1 pitrilysin metallopeptidase 1 1 1
MIRT035887 PRRC2A proline rich coiled-coil 2A 1 1
MIRT035888 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 1 1
MIRT035889 MLLT6 MLLT6, PHD finger containing 1 1
MIRT035890 EIF3I eukaryotic translation initiation factor 3 subunit I 1 1
MIRT035891 FASN fatty acid synthase 1 1
MIRT035892 LEPREL4 prolyl 3-hydroxylase family member 4 (non-enzymatic) 1 1
MIRT035893 HSCB HscB mitochondrial iron-sulfur cluster cochaperone 1 1
MIRT035894 PSME4 proteasome activator subunit 4 1 1
MIRT035895 FRS2 fibroblast growth factor receptor substrate 2 1 1
MIRT035896 ZNF264 zinc finger protein 264 1 1
MIRT035897 HYLS1 HYLS1, centriolar and ciliogenesis associated 1 1
MIRT035898 USP54 ubiquitin specific peptidase 54 1 1
MIRT035899 L1TD1 LINE1 type transposase domain containing 1 1 1
MIRT035900 OR51E2 olfactory receptor family 51 subfamily E member 2 1 1
MIRT053762 CLDN18 claudin 18 3 1
MIRT060730 RPS3 ribosomal protein S3 2 2
MIRT083986 RAB22A RAB22A, member RAS oncogene family 2 2
MIRT098550 TBPL1 TATA-box binding protein like 1 2 6
MIRT134983 TWF1 twinfilin actin binding protein 1 2 4
MIRT136956 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT222065 PURB purine rich element binding protein B 2 2
MIRT239574 UBN2 ubinuclein 2 2 4
MIRT261820 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT264698 C11ORF57 chromosome 11 open reading frame 57 2 4
MIRT308476 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT377481 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT442304 NEU3 neuraminidase 3 2 2
MIRT446083 SLC30A10 solute carrier family 30 member 10 2 2
MIRT449606 PRPF4 pre-mRNA processing factor 4 2 2
MIRT453767 NUCB1 nucleobindin 1 2 10
MIRT455603 SRSF3 serine and arginine rich splicing factor 3 2 2
MIRT455913 KIF2C kinesin family member 2C 2 2
MIRT460091 ZYG11B zyg-11 family member B, cell cycle regulator 2 4
MIRT460866 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT461339 NUP133 nucleoporin 133 2 2
MIRT463769 YOD1 YOD1 deubiquitinase 2 2
MIRT466368 THAP1 THAP domain containing 1 2 4
MIRT467168 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT468703 SDHD succinate dehydrogenase complex subunit D 2 2
MIRT469122 RNF126 ring finger protein 126 2 2
MIRT472426 NCBP2 nuclear cap binding protein subunit 2 2 4
MIRT479420 CDKN1B cyclin dependent kinase inhibitor 1B 2 8
MIRT484260 FAM177A1 family with sequence similarity 177 member A1 2 2
MIRT485468 IL6ST interleukin 6 signal transducer 2 10
MIRT490237 H2AFZ H2A histone family member Z 2 6
MIRT491002 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT492127 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT499169 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT499825 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT501794 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT503441 GINS4 GINS complex subunit 4 2 4
MIRT503688 MAVS mitochondrial antiviral signaling protein 2 5
MIRT506926 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT511430 HOXA10 homeobox A10 2 6
MIRT512415 LAYN layilin 2 4
MIRT513791 NIPAL3 NIPA like domain containing 3 2 4
MIRT516163 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 4
MIRT516513 PARK2 parkin RBR E3 ubiquitin protein ligase 2 2
MIRT516915 HINFP histone H4 transcription factor 2 2
MIRT517102 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT517350 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT518019 ABHD15 abhydrolase domain containing 15 2 2
MIRT520945 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT525250 RNF213 ring finger protein 213 2 2
MIRT530634 PPIC peptidylprolyl isomerase C 2 4
MIRT530671 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531563 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT538205 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT538419 COLEC10 collectin subfamily member 10 2 2
MIRT541964 ZNF485 zinc finger protein 485 2 2
MIRT543088 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT543257 ZNF662 zinc finger protein 662 2 2
MIRT543589 KIAA1549 KIAA1549 2 2
MIRT543955 RNF20 ring finger protein 20 2 2
MIRT544043 C9orf64 chromosome 9 open reading frame 64 2 4
MIRT548064 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548240 FBXW7 F-box and WD repeat domain containing 7 2 2
MIRT548442 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548623 DAZAP1 DAZ associated protein 1 2 4
MIRT548770 COLEC12 collectin subfamily member 12 2 2
MIRT549506 HDDC2 HD domain containing 2 2 4
MIRT551924 AKAP8 A-kinase anchoring protein 8 2 4
MIRT555656 PGRMC1 progesterone receptor membrane component 1 2 2
MIRT556286 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT557012 HOXD13 homeobox D13 2 4
MIRT563907 CLSPN claspin 2 2
MIRT565527 SON SON DNA binding protein 2 2
MIRT568000 COMMD2 COMM domain containing 2 2 2
MIRT569831 PLA2G16 phospholipase A2 group XVI 2 4
MIRT573905 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT616589 KLHL9 kelch like family member 9 2 2
MIRT617137 ZNF556 zinc finger protein 556 2 2
MIRT617400 API5 apoptosis inhibitor 5 2 2
MIRT617455 CCS copper chaperone for superoxide dismutase 2 2
MIRT617799 ZNF793 zinc finger protein 793 2 2
MIRT618190 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT618303 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2 2
MIRT618329 ZNF813 zinc finger protein 813 2 2
MIRT618820 PHF20 PHD finger protein 20 2 2
MIRT619153 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT619530 ZNF708 zinc finger protein 708 2 2
MIRT619849 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT620806 SLC26A2 solute carrier family 26 member 2 2 2
MIRT621312 YIPF4 Yip1 domain family member 4 2 2
MIRT621358 GUCA1B guanylate cyclase activator 1B 2 2
MIRT621366 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 2 2
MIRT621547 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT621883 TAOK1 TAO kinase 1 2 2
MIRT622451 RNF19B ring finger protein 19B 2 2
MIRT623404 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT623587 IPO9 importin 9 2 2
MIRT623974 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT624086 DPP8 dipeptidyl peptidase 8 2 2
MIRT624108 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT632486 RNF8 ring finger protein 8 2 2
MIRT634057 PLIN3 perilipin 3 2 2
MIRT634657 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT640682 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT641242 CENPN centromere protein N 2 2
MIRT642260 ZNF677 zinc finger protein 677 2 2
MIRT642954 RELA RELA proto-oncogene, NF-kB subunit 2 2
MIRT644326 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT644632 ICA1L islet cell autoantigen 1 like 2 2
MIRT645721 POLR3A RNA polymerase III subunit A 2 2
MIRT647850 LYPLA1 lysophospholipase I 2 2
MIRT649281 NEK8 NIMA related kinase 8 2 2
MIRT650038 VHL von Hippel-Lindau tumor suppressor 2 2
MIRT650354 RRP36 ribosomal RNA processing 36 2 2
MIRT651144 ZNF384 zinc finger protein 384 2 2
MIRT651778 UTP6 UTP6, small subunit processome component 2 2
MIRT652576 TLCD2 TLC domain containing 2 2 2
MIRT654621 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT656023 MYO5A myosin VA 2 2
MIRT656105 MSRB3 methionine sulfoxide reductase B3 2 2
MIRT657749 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT657924 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT658848 DUSP19 dual specificity phosphatase 19 2 2
MIRT659100 DENND6A DENN domain containing 6A 2 2
MIRT659153 DCX doublecortin 2 2
MIRT660870 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT661941 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT663577 C10orf32 BLOC-1 related complex subunit 7 2 2
MIRT664625 WDPCP WD repeat containing planar cell polarity effector 2 4
MIRT666562 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT669992 GPR156 G protein-coupled receptor 156 2 4
MIRT670445 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670853 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671942 SPPL3 signal peptide peptidase like 3 2 2
MIRT674269 LMOD3 leiomodin 3 2 2
MIRT674424 MIOX myo-inositol oxygenase 2 4
MIRT674982 ATP5G1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) 2 2
MIRT675038 BACE2 beta-site APP-cleaving enzyme 2 2 4
MIRT675309 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT675641 TTPAL alpha tocopherol transfer protein like 2 2
MIRT688688 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT689369 ZNF101 zinc finger protein 101 2 2
MIRT689605 AKAP6 A-kinase anchoring protein 6 2 2
MIRT691715 LARS leucyl-tRNA synthetase 2 2
MIRT695473 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695530 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT695878 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT696586 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT703007 HEATR5A HEAT repeat containing 5A 2 2
MIRT707942 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 2
MIRT709765 GPR183 G protein-coupled receptor 183 2 2
MIRT710332 ZNF669 zinc finger protein 669 2 2
MIRT713249 ZFP30 ZFP30 zinc finger protein 2 2
MIRT716613 RBM18 RNA binding motif protein 18 2 2
MIRT733414 BAG2 BCL2 associated athanogene 2 2 0
MIRT756135 THSD7A thrombospondin type 1 domain containing 7A 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-1303 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-1303 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-1303 Rituximab sensitive High Diffuse Large B-Cell Lymphoma cell line (DB, NU-DHL-1, NU-DUL-1, MC-116, SU-DHL-4, SU-DHL-5, FARAGE, HBL-1, OCI-Ly3, OCI-Ly7, OCI-Ly8, OCI-Ly19, RIVA, SU-DHL-8, U2932)
hsa-miR-1303 Etoposide 36462 NSC141540 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vinorelbine 44424639 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vincristine 5978 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-mir-1303 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-1303 Topotecan 60699 NSC609699 approved resistant cell line (W1)
hsa-mir-1303 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1303 Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1303 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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