pre-miRNA Information
pre-miRNA hsa-mir-6752   
Genomic Coordinates chr11: 67490245 - 67490315
Description Homo sapiens miR-6752 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6752-3p
Sequence 51| UCCCUGCCCCCAUACUCCCAG |71
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs760443460 2 dbSNP
rs746450218 4 dbSNP
rs897972135 4 dbSNP
rs766020814 10 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SLCO4C1   
Synonyms OATP-H, OATP-M1, OATP4C1, OATPX, PRO2176, SLC21A20
Description solute carrier organic anion transporter family member 4C1
Transcript NM_180991   
Expression
Putative miRNA Targets on SLCO4C1
3'UTR of SLCO4C1
(miRNA target sites are highlighted)
>SLCO4C1|NM_180991|3'UTR
   1 AATGGGAAAAGAGAAGACTGTTTTACACCTGGAAAATTTACCTCGATTTTTAAGAACACACATTGCCATGGCAGGATTAT
  81 CTATCCAATATGGACAATCATATTTACAAAATTGATGTTTTTATAATCAAATGTATTTTTTTACTTATGTAGTTTTTGTT
 161 TTATGCAAGAAACAGACCTGTGCCTTCAAAGCCCACGTAAAGCCTCAAAACACAGCACACACACACACGAGCACACACAC
 241 ACACACACACACGAACACACACACACACACACACACGCACACATACACACTTATTTCCTATTCCCATTGTCTAGGTATGA
 321 AATCCTCAAGCAATAACAAGAAAAAAGGCCCACAATTAGAAAAATTTACATTTAAAAAAAATGTTGTTTCTATCCCCATT
 401 ACAACTTGTTTAATTTTAATTTTCATTGTCAATATTTTGAGCTTAGAACATTTATGGTATAAAAATTTAAACTAATCAAA
 481 GTTGTGTGATGATTTCCGGGAATTATTATTGAAAGCCTATGAATTTAAAACCAGGTTTACCATGTAATTTGTTTTTAAAT
 561 TTATGTATACTAGCCTGGCCTTTCTCCAAGCAAATTATTGAACTATTAGAATATGTTAGTTATCATCCTTGTGTCTTAGT
 641 ATATAGTGAATACAGAAACATCAGCATTGTATACACATATTTTCACTTTAACTCAAGAATTCCAGGAGGTAATTTGTTGA
 721 TATTACAATTTTTAACACATTTATGATTCTGTGATAATATTATTCAATTGCATATATTTCAGAGGAAAGTACCAGTCAGT
 801 AAAGAAAAATGCCAACTAAACATGAAACTATTGATCAATACTTATATACCTTTAATTTTTCCTATTTGAAAAGCCAACCA
 881 CTTAACACATTACTCATAGCACCTAAGACAGTGCCTTGCATAGTGTAGTCATCTATTATTATTGTTTAATTAGAATATTA
 961 AACCCTACCCTTTAACTCAGCAGTCCCCAACCTTTTTTGCATCAGGGACCATTTTTGTGGAAGACAATTTTTCCATGGGG
1041 GAAGAAGGTATGGTTTTGAGATGAAACTGCTCCACCTCAGACCATCAGGCATTAGTTAGATTCTCATAAGGAGAGTGCAA
1121 CCTAGATCCCTTGCATGTGCAGTTCCCAATGGAGTGTGCACTCCTATGAGAATCTAATGCCACTACTGATCTAACAAGAG
1201 GTGGAGCTCAGGCAGTAATGCTCACTCACCTGCCTCTCAGCTCACCAACTGTGTGGCCCGATTCCTAACAGGCCACACAC
1281 AGCCCAGGGCTGGGGACCCCTGCTTTAACTGATGCATTGATTTGATAAAGTATTTTACAAGCCTGATAATGTTATAACCC
1361 TGTTTATTCAGGTCAGATTTATGCCAACTTTGCTGAGAATATGGAGGGTATAGATGAGTGAACATCAACAAACATAACTT
1441 CTACCATGGTTAAGAATTTTACTTAGGAAAAGTATTGAAGTTCAAATCCAGATAGTATTACATTTGAAATTGTTATAAGG
1521 GTTATTAATTTAATAAAATTCATCATCAGGTTTCCCCTATAAGCTTTCTCCTAGGTTAATTTTCCACAAGCATTGTTTTA
1601 TATACACTGTAATCAGGATAACACAAGCTTAGTGTTAGATCTTGTAGGAAACCAAGATTAGAAACATTAGAAATTTGCAG
1681 AATTTAAGAAATTATGTTTTGTGGTAATCTATGGCCAACGATGTTAGAACCTAGCGCAATTGTAAAGTGAAATTCAAGGA
1761 GAAGGAATGAGGAGTTAGGGAAGCAGCATACTTGAATATTAGAGAAGGAGAGGAGCTGTGGGTCAGGAATCAGAGAGACC
1841 TGCTAAAACCAGACAGATATAAACACCAAAGACGGAAGCCAAATAGGTAGCCAAAAATCCAGATATTTGAGAAGCAGGAA
1921 ATTTATAGCAACCAAAGAAATAGGGCAAGAGAGGCAGGTGAACACACATGATACCTCAATTGACAATCTTCCTCCCACCA
2001 AGCCAGACACGTTGTAAATGCTGCTTCCTATTGGAGCCCAGAAAAAAGGAAAAGGAAAGTTTAGGCTTTCTTTGTCCTTT
2081 GTGTGGAAGCAGGGAATTGGATTGAAGACTTTCATAGTTGTAACATAAAGGCAAATCCTGAGGAACTCACTGATGGAGAT
2161 GTGAAATGGCAGTAAGGAAGAAAACAGAATAACTGAACAAATATATTAGTCTAGGGCCACTTAATTTAGAGGAAGAAAAA
2241 AAATCAACCCATCCATAGAAATAGTTTGATAAACAGGTCACTAAATCATTGGCGTTTATAAAGATTCTTAGCTATCAAGG
2321 GCTGCATTGTATTTTATATACTCAGTTTTATAAGGTGATACTTTTTAAATAAGCGCTTTAATGAAAATGGTTAGACTGAA
2401 AATAATTTTGGTCCTTAAAAGGAGTCAGGAGCTTTTATATATAAGGTACATATTTTAAAAGAATACCTCCTTTATAACAG
2481 GGTTTTACAGACACTACCATAATTTATAATCATTATTTTTTACTTTTGGGTTCACCTAGATCATATGAGTTGATGTGATA
2561 CTTCTAGAACAAAATTATTCATAGTGCGTTTTTTGTAATTTATGATTGTTAAGTAAGCTTGACTTATAAATTGACATTGT
2641 AATTGTGTACATAATTGGATATATGTGTTAAAATTTAACATTTAGATTTACTTAATTGTAGAAAATACAAATGTAAAACT
2721 TACACATGGAAAGAACTGTATGCAGTTGACTTTACTATGTAAATTGGAGGGAAACAAAGTTTTAGATCCATTTTCTTTCA
2801 AAATTTTCTTTATTGTAAAGTATGCAAAATATATATTCATACCATTTATTAAATCAGAATGTTTATACAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gacccuCAUACCCCCGUCCCu 5'
                ||:|||  |||||| 
Target 5' tcctttGTGTGGAAGCAGGGa 3'
2075 - 2095 131.00 -20.20
2
miRNA  3' gaccCUCAUAC-CCCCGUCCcu 5'
              |:| | | | ||||||  
Target 5' aataGGGCAAGAGAGGCAGGtg 3'
1939 - 1960 129.00 -14.10
3
miRNA  3' gacccucauacccCCGUCCcu 5'
                       ||||||  
Target 5' cacacattgccatGGCAGGat 3'
57 - 77 120.00 -8.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30160807 3 COSMIC
COSN30448848 6 COSMIC
COSN31499053 9 COSMIC
COSN30520777 24 COSMIC
COSN30496056 32 COSMIC
COSN30656986 36 COSMIC
COSN30121234 44 COSMIC
COSN30155774 44 COSMIC
COSN510776 45 COSMIC
COSN30103843 46 COSMIC
COSN30522872 52 COSMIC
COSN31507649 67 COSMIC
COSN30457884 75 COSMIC
COSN29545746 93 COSMIC
COSN31499196 93 COSMIC
COSN30123432 104 COSMIC
COSN19706789 113 COSMIC
COSN31520682 139 COSMIC
COSN30508838 148 COSMIC
COSN30116392 169 COSMIC
COSN31580573 175 COSMIC
COSN20075201 180 COSMIC
COSN28201570 249 COSMIC
COSN27743615 317 COSMIC
COSN19390395 395 COSMIC
COSN9248200 448 COSMIC
COSN27417301 487 COSMIC
COSN17759917 496 COSMIC
COSN31962440 530 COSMIC
COSN24777163 679 COSMIC
COSN8379642 733 COSMIC
COSN14463428 935 COSMIC
COSN2055054 1029 COSMIC
COSN28441593 1122 COSMIC
COSN31962439 1161 COSMIC
COSN7852029 1188 COSMIC
COSN28095816 1303 COSMIC
COSN216853 1418 COSMIC
COSN29141509 1659 COSMIC
COSM4407058 1873 COSMIC
COSM9441392 1888 COSMIC
COSM9375516 1899 COSMIC
COSM4159336 1959 COSMIC
COSM9441329 1960 COSMIC
COSM9401007 1974 COSMIC
COSM9283988 1994 COSMIC
COSM7307790 1997 COSMIC
COSM5445726 2044 COSMIC
COSM9384979 2064 COSMIC
COSM4407225 2071 COSMIC
COSN31966123 2187 COSMIC
COSN26812468 2221 COSMIC
COSN30173139 2229 COSMIC
COSN27186029 2235 COSMIC
COSN32062249 2235 COSMIC
COSN25087649 2275 COSMIC
COSN19655673 2307 COSMIC
COSN9010228 2352 COSMIC
COSN32064169 2424 COSMIC
COSN7852028 2594 COSMIC
COSN30163126 2706 COSMIC
COSN25079889 2796 COSMIC
COSN22666875 2855 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1190460164 3 dbSNP
rs1463910921 11 dbSNP
rs10073955 13 dbSNP
rs1209693421 17 dbSNP
rs769040304 20 dbSNP
rs749305462 21 dbSNP
rs775660339 23 dbSNP
rs1346054823 26 dbSNP
rs536845696 28 dbSNP
rs201552336 44 dbSNP
rs1364322826 46 dbSNP
rs1321165173 50 dbSNP
rs1484232330 54 dbSNP
rs1003482136 59 dbSNP
rs906584288 61 dbSNP
rs975382284 65 dbSNP
rs551349417 68 dbSNP
rs1465143281 75 dbSNP
rs1190144921 93 dbSNP
rs533380608 102 dbSNP
rs962710864 107 dbSNP
rs1176233458 109 dbSNP
rs1016821626 112 dbSNP
rs1378859972 129 dbSNP
rs1344269746 132 dbSNP
rs915016659 134 dbSNP
rs1288743526 136 dbSNP
rs1275346122 142 dbSNP
rs1437773054 144 dbSNP
rs562315652 148 dbSNP
rs547753015 153 dbSNP
rs923672586 158 dbSNP
rs767348748 164 dbSNP
rs954357822 173 dbSNP
rs1332840547 183 dbSNP
rs1035288396 184 dbSNP
rs529446362 196 dbSNP
rs763347780 197 dbSNP
rs1023351139 206 dbSNP
rs1250897807 223 dbSNP
rs193137265 228 dbSNP
rs527768491 229 dbSNP
rs757203139 229 dbSNP
rs759079162 229 dbSNP
rs921606953 229 dbSNP
rs1416745797 231 dbSNP
rs540437331 233 dbSNP
rs893514206 234 dbSNP
rs1054625768 235 dbSNP
rs964344480 239 dbSNP
rs1413101597 245 dbSNP
rs1459270215 245 dbSNP
rs1163308272 246 dbSNP
rs1394119758 247 dbSNP
rs1017491101 248 dbSNP
rs1371316924 249 dbSNP
rs1402194996 249 dbSNP
rs1390936046 250 dbSNP
rs1289044444 251 dbSNP
rs934934602 252 dbSNP
rs113673296 253 dbSNP
rs1221886428 253 dbSNP
rs142190401 253 dbSNP
rs1473859405 253 dbSNP
rs200802255 253 dbSNP
rs3995237 253 dbSNP
rs766110190 253 dbSNP
rs1025682238 254 dbSNP
rs148402077 254 dbSNP
rs1645561 255 dbSNP
rs758010508 255 dbSNP
rs773625978 255 dbSNP
rs367577553 256 dbSNP
rs1308787454 257 dbSNP
rs1372414995 257 dbSNP
rs1429336744 257 dbSNP
rs1291311022 258 dbSNP
rs1467134076 258 dbSNP
rs1378303462 259 dbSNP
rs906507439 259 dbSNP
rs1192507242 261 dbSNP
rs544032240 264 dbSNP
rs1264840419 269 dbSNP
rs1274749413 269 dbSNP
rs1185201783 271 dbSNP
rs1209395446 271 dbSNP
rs1051674128 273 dbSNP
rs1237453053 273 dbSNP
rs1441616722 274 dbSNP
rs893734600 275 dbSNP
rs373638294 276 dbSNP
rs112792066 277 dbSNP
rs1169406804 277 dbSNP
rs1333561815 277 dbSNP
rs1432979319 277 dbSNP
rs1491183456 277 dbSNP
rs199955198 277 dbSNP
rs35918245 277 dbSNP
rs375932197 277 dbSNP
rs762382919 277 dbSNP
rs796558599 277 dbSNP
rs796951834 277 dbSNP
rs796970089 277 dbSNP
rs1277282642 278 dbSNP
rs1443566770 279 dbSNP
rs921314522 279 dbSNP
rs1202054279 280 dbSNP
rs1464693674 293 dbSNP
rs1189494444 301 dbSNP
rs564816242 304 dbSNP
rs902386392 309 dbSNP
rs1256194327 312 dbSNP
rs369364837 315 dbSNP
rs941339239 317 dbSNP
rs921574852 318 dbSNP
rs909912749 323 dbSNP
rs1446370912 337 dbSNP
rs1434145022 346 dbSNP
rs982701625 363 dbSNP
rs951351403 364 dbSNP
rs1335463067 373 dbSNP
rs1433849203 374 dbSNP
rs941722259 374 dbSNP
rs1397535867 375 dbSNP
rs910119544 376 dbSNP
rs1209811505 382 dbSNP
rs984820793 382 dbSNP
rs75686230 386 dbSNP
rs1425397215 387 dbSNP
rs1467312166 393 dbSNP
rs1161029765 395 dbSNP
rs1247386936 397 dbSNP
rs1472351990 402 dbSNP
rs552729397 405 dbSNP
rs75088245 406 dbSNP
rs1456627719 408 dbSNP
rs969197323 411 dbSNP
rs1159717996 412 dbSNP
rs970802058 432 dbSNP
rs1023341279 435 dbSNP
rs1322414347 436 dbSNP
rs369476106 450 dbSNP
rs1024025757 455 dbSNP
rs1285890804 476 dbSNP
rs1237474801 477 dbSNP
rs1012236463 490 dbSNP
rs1198157541 492 dbSNP
rs188979454 497 dbSNP
rs555000423 498 dbSNP
rs1354626744 501 dbSNP
rs1209500534 504 dbSNP
rs76171439 509 dbSNP
rs776934318 512 dbSNP
rs1051358006 515 dbSNP
rs1453522025 519 dbSNP
rs771260730 523 dbSNP
rs1251166231 525 dbSNP
rs1472228025 533 dbSNP
rs1182746010 539 dbSNP
rs569480902 542 dbSNP
rs900041212 547 dbSNP
rs575698237 556 dbSNP
rs941450109 567 dbSNP
rs1162405271 574 dbSNP
rs1248584031 580 dbSNP
rs909986327 587 dbSNP
rs761020136 588 dbSNP
rs1305642833 590 dbSNP
rs558057234 605 dbSNP
rs1369335365 613 dbSNP
rs1375392194 618 dbSNP
rs1410993539 627 dbSNP
rs1290712195 629 dbSNP
rs1339195075 632 dbSNP
rs1331244117 633 dbSNP
rs539384299 635 dbSNP
rs1001999389 642 dbSNP
rs1358820370 648 dbSNP
rs1446967329 653 dbSNP
rs541290440 669 dbSNP
rs930002595 677 dbSNP
rs1404354009 681 dbSNP
rs1253944697 696 dbSNP
rs927833043 702 dbSNP
rs908907457 704 dbSNP
rs982091848 708 dbSNP
rs1414032635 714 dbSNP
rs1368755942 716 dbSNP
rs1473580979 721 dbSNP
rs1166272479 734 dbSNP
rs969188826 749 dbSNP
rs565953462 751 dbSNP
rs1023451026 765 dbSNP
rs547517726 767 dbSNP
rs1164837467 770 dbSNP
rs989170161 773 dbSNP
rs1379693082 776 dbSNP
rs957758937 786 dbSNP
rs1016881336 792 dbSNP
rs1395953326 798 dbSNP
rs140619400 804 dbSNP
rs1342578347 811 dbSNP
rs1458279469 811 dbSNP
rs954405129 830 dbSNP
rs1226496369 834 dbSNP
rs1030324842 842 dbSNP
rs1343103708 845 dbSNP
rs998480864 846 dbSNP
rs1254323869 847 dbSNP
rs1023701939 849 dbSNP
rs1199745706 855 dbSNP
rs899983990 859 dbSNP
rs568577275 869 dbSNP
rs7719298 872 dbSNP
rs182380406 877 dbSNP
rs1290831812 881 dbSNP
rs1047146527 887 dbSNP
rs929966323 896 dbSNP
rs1170014186 899 dbSNP
rs1375363910 904 dbSNP
rs535958271 906 dbSNP
rs1173624068 907 dbSNP
rs1351955100 909 dbSNP
rs546363397 923 dbSNP
rs1030283536 929 dbSNP
rs1320285703 941 dbSNP
rs1366276579 950 dbSNP
rs528017326 963 dbSNP
rs1241449055 974 dbSNP
rs1299296254 976 dbSNP
rs1311626248 990 dbSNP
rs1046732643 991 dbSNP
rs1272613550 994 dbSNP
rs1325562386 999 dbSNP
rs1206651328 1003 dbSNP
rs568422706 1005 dbSNP
rs1465071655 1006 dbSNP
rs1187849902 1008 dbSNP
rs916514087 1010 dbSNP
rs1432053663 1015 dbSNP
rs1198919104 1017 dbSNP
rs62370435 1021 dbSNP
rs1456054355 1025 dbSNP
rs1158984143 1027 dbSNP
rs1006393561 1028 dbSNP
rs1389829487 1038 dbSNP
rs887410457 1042 dbSNP
rs1047867267 1043 dbSNP
rs957872042 1044 dbSNP
rs930198241 1046 dbSNP
rs540628775 1048 dbSNP
rs1347326501 1052 dbSNP
rs1046653438 1057 dbSNP
rs977906377 1058 dbSNP
rs1287553122 1070 dbSNP
rs1159201494 1071 dbSNP
rs747029240 1072 dbSNP
rs1217546025 1082 dbSNP
rs1263341479 1094 dbSNP
rs7718818 1106 dbSNP
rs1189594537 1107 dbSNP
rs773840319 1108 dbSNP
rs995861029 1115 dbSNP
rs191278699 1118 dbSNP
rs1247576459 1122 dbSNP
rs1224917554 1123 dbSNP
rs543089063 1124 dbSNP
rs1413215259 1128 dbSNP
rs1487526137 1130 dbSNP
rs1421283259 1132 dbSNP
rs925278862 1136 dbSNP
rs111493807 1144 dbSNP
rs1458544557 1146 dbSNP
rs1295431311 1148 dbSNP
rs1217767792 1149 dbSNP
rs557706648 1150 dbSNP
rs1368772571 1158 dbSNP
rs966725138 1159 dbSNP
rs73778230 1166 dbSNP
rs1319305135 1167 dbSNP
rs1310238861 1179 dbSNP
rs371679562 1180 dbSNP
rs748787556 1183 dbSNP
rs1017860313 1186 dbSNP
rs1005943499 1190 dbSNP
rs1367616778 1198 dbSNP
rs187195921 1209 dbSNP
rs115276030 1220 dbSNP
rs1013543424 1228 dbSNP
rs535814597 1230 dbSNP
rs1397692839 1249 dbSNP
rs1165682063 1254 dbSNP
rs1388441637 1258 dbSNP
rs1339626701 1259 dbSNP
rs1298620133 1260 dbSNP
rs1455129331 1273 dbSNP
rs1047496881 1280 dbSNP
rs1444209088 1293 dbSNP
rs1300928974 1294 dbSNP
rs568435969 1297 dbSNP
rs1175265458 1299 dbSNP
rs1413980784 1321 dbSNP
rs1482981954 1322 dbSNP
rs1227048197 1323 dbSNP
rs1430017408 1331 dbSNP
rs550177183 1338 dbSNP
rs1309854605 1341 dbSNP
rs182498657 1346 dbSNP
rs1208624294 1350 dbSNP
rs1237316115 1351 dbSNP
rs1476987718 1355 dbSNP
rs1262717538 1358 dbSNP
rs570915582 1360 dbSNP
rs3857354 1362 dbSNP
rs1254773681 1367 dbSNP
rs906916489 1383 dbSNP
rs1169302604 1384 dbSNP
rs1312285915 1385 dbSNP
rs1411643271 1388 dbSNP
rs527840116 1396 dbSNP
rs1264416032 1397 dbSNP
rs191400794 1400 dbSNP
rs1453136688 1415 dbSNP
rs552173101 1420 dbSNP
rs548441862 1427 dbSNP
rs1338393288 1437 dbSNP
rs1046622607 1440 dbSNP
rs1433900295 1441 dbSNP
rs1297767854 1445 dbSNP
rs949645320 1450 dbSNP
rs916714577 1458 dbSNP
rs1278574148 1464 dbSNP
rs1316970330 1466 dbSNP
rs1055715968 1471 dbSNP
rs755732391 1489 dbSNP
rs1266552448 1495 dbSNP
rs528882432 1497 dbSNP
rs936882968 1499 dbSNP
rs1189436461 1512 dbSNP
rs925342771 1519 dbSNP
rs978213340 1520 dbSNP
rs113229194 1521 dbSNP
rs966694198 1541 dbSNP
rs923278133 1544 dbSNP
rs1386167528 1548 dbSNP
rs975959666 1549 dbSNP
rs1408172055 1556 dbSNP
rs1346555930 1565 dbSNP
rs1178737849 1570 dbSNP
rs965003529 1576 dbSNP
rs1273668989 1579 dbSNP
rs1423271054 1586 dbSNP
rs1346699632 1588 dbSNP
rs1017406640 1600 dbSNP
rs985015364 1602 dbSNP
rs139864211 1617 dbSNP
rs1026016344 1628 dbSNP
rs1328877066 1632 dbSNP
rs993241218 1633 dbSNP
rs1213965206 1634 dbSNP
rs1450029797 1642 dbSNP
rs1220935992 1644 dbSNP
rs865812001 1648 dbSNP
rs576099912 1653 dbSNP
rs906844458 1658 dbSNP
rs1480756492 1667 dbSNP
rs146465938 1670 dbSNP
rs1462184453 1685 dbSNP
rs1245482172 1691 dbSNP
rs1013808892 1699 dbSNP
rs1386699880 1704 dbSNP
rs895374029 1707 dbSNP
rs545686313 1711 dbSNP
rs1258309915 1718 dbSNP
rs183594205 1719 dbSNP
rs1407348627 1720 dbSNP
rs1306756405 1722 dbSNP
rs192051556 1730 dbSNP
rs1281572430 1733 dbSNP
rs535775915 1735 dbSNP
rs945447921 1736 dbSNP
rs556464983 1740 dbSNP
rs1228651584 1746 dbSNP
rs1203058385 1753 dbSNP
rs923245600 1755 dbSNP
rs1182261865 1757 dbSNP
rs1365316492 1772 dbSNP
rs1471637015 1774 dbSNP
rs1384978692 1776 dbSNP
rs1385431524 1777 dbSNP
rs1426034187 1785 dbSNP
rs1166114146 1789 dbSNP
rs1370495089 1797 dbSNP
rs1392477350 1798 dbSNP
rs976092120 1827 dbSNP
rs1436939344 1839 dbSNP
rs1196890049 1843 dbSNP
rs574768173 1854 dbSNP
rs1339055501 1855 dbSNP
rs1456371241 1858 dbSNP
rs943410372 1859 dbSNP
rs556636235 1860 dbSNP
rs530465480 1863 dbSNP
rs777953353 1866 dbSNP
rs11949650 1873 dbSNP
rs1252460725 1874 dbSNP
rs570861889 1879 dbSNP
rs971748540 1886 dbSNP
rs1186524268 1887 dbSNP
rs1243394538 1891 dbSNP
rs1247723055 1901 dbSNP
rs1446013801 1902 dbSNP
rs1186200669 1916 dbSNP
rs187259873 1923 dbSNP
rs971138323 1932 dbSNP
rs534146836 1934 dbSNP
rs1307882817 1938 dbSNP
rs1012978682 1940 dbSNP
rs1414280519 1947 dbSNP
rs1356745500 1956 dbSNP
rs1448368189 1957 dbSNP
rs1030952882 1959 dbSNP
rs1337737154 1965 dbSNP
rs114166100 1968 dbSNP
rs201921835 1969 dbSNP
rs1433161195 1971 dbSNP
rs1034340243 1972 dbSNP
rs1389026868 1979 dbSNP
rs1228110418 1980 dbSNP
rs1253033452 1986 dbSNP
rs1165932859 1990 dbSNP
rs755343169 1996 dbSNP
rs1425518927 1997 dbSNP
rs1379967997 2006 dbSNP
rs1186258150 2008 dbSNP
rs1260482554 2010 dbSNP
rs1001134541 2011 dbSNP
rs1194634217 2017 dbSNP
rs1477948744 2019 dbSNP
rs548355441 2026 dbSNP
rs903986161 2034 dbSNP
rs1408738013 2048 dbSNP
rs866474562 2049 dbSNP
rs200362620 2050 dbSNP
rs79718014 2054 dbSNP
rs758738487 2058 dbSNP
rs1320099484 2059 dbSNP
rs149085489 2059 dbSNP
rs945411891 2062 dbSNP
rs1384013203 2070 dbSNP
rs4703217 2071 dbSNP
rs1182460467 2078 dbSNP
rs1450757401 2085 dbSNP
rs1222813345 2094 dbSNP
rs1283744554 2098 dbSNP
rs1325380825 2106 dbSNP
rs1040483424 2108 dbSNP
rs180877323 2109 dbSNP
rs549367439 2112 dbSNP
rs985078796 2114 dbSNP
rs1264645974 2120 dbSNP
rs1490346130 2133 dbSNP
rs1200748788 2143 dbSNP
rs1281033470 2153 dbSNP
rs533787168 2158 dbSNP
rs1471831812 2161 dbSNP
rs1158766002 2169 dbSNP
rs766602697 2171 dbSNP
rs930580090 2177 dbSNP
rs919068649 2179 dbSNP
rs1439578825 2193 dbSNP
rs1364857407 2194 dbSNP
rs760782924 2197 dbSNP
rs531294707 2210 dbSNP
rs1183433844 2213 dbSNP
rs1404299106 2213 dbSNP
rs971859518 2214 dbSNP
rs916995001 2215 dbSNP
rs1305941799 2217 dbSNP
rs111248159 2218 dbSNP
rs1240727945 2238 dbSNP
rs958583483 2244 dbSNP
rs1490033600 2255 dbSNP
rs766847841 2255 dbSNP
rs187965859 2256 dbSNP
rs1271707013 2262 dbSNP
rs1283574548 2278 dbSNP
rs1215581336 2288 dbSNP
rs1001504037 2289 dbSNP
rs1351367167 2291 dbSNP
rs1262405670 2293 dbSNP
rs572024181 2294 dbSNP
rs1425409410 2298 dbSNP
rs560423215 2303 dbSNP
rs1165487744 2304 dbSNP
rs1380293480 2315 dbSNP
rs1367373066 2320 dbSNP
rs1407914440 2322 dbSNP
rs3811976 2326 dbSNP
rs1373759449 2327 dbSNP
rs867519714 2332 dbSNP
rs1310171811 2336 dbSNP
rs1392810409 2336 dbSNP
rs1405726149 2338 dbSNP
rs1021244003 2355 dbSNP
rs1009717943 2357 dbSNP
rs1293318735 2361 dbSNP
rs1347815548 2370 dbSNP
rs574832565 2374 dbSNP
rs1040849150 2375 dbSNP
rs1007650751 2390 dbSNP
rs774194141 2396 dbSNP
rs1242776340 2402 dbSNP
rs1445393569 2403 dbSNP
rs556452656 2415 dbSNP
rs111864611 2427 dbSNP
rs1160730212 2432 dbSNP
rs185071411 2438 dbSNP
rs919157356 2441 dbSNP
rs1354993281 2443 dbSNP
rs942522549 2450 dbSNP
rs1334379704 2459 dbSNP
rs558807064 2463 dbSNP
rs1381681466 2468 dbSNP
rs1036276411 2469 dbSNP
rs1316603315 2482 dbSNP
rs1362366234 2488 dbSNP
rs534332446 2489 dbSNP
rs1213437000 2492 dbSNP
rs949880569 2496 dbSNP
rs1309722529 2497 dbSNP
rs1208468851 2506 dbSNP
rs1262904102 2507 dbSNP
rs917098599 2512 dbSNP
rs370977624 2522 dbSNP
rs774960235 2537 dbSNP
rs1475142089 2539 dbSNP
rs1187130046 2541 dbSNP
rs958502248 2542 dbSNP
rs867375647 2544 dbSNP
rs1260557199 2546 dbSNP
rs1192738377 2547 dbSNP
rs925583261 2569 dbSNP
rs1174076554 2570 dbSNP
rs1405058970 2581 dbSNP
rs1470035787 2585 dbSNP
rs1338330858 2587 dbSNP
rs111467765 2588 dbSNP
rs1429431586 2595 dbSNP
rs1270206658 2596 dbSNP
rs1364781301 2601 dbSNP
rs1263764610 2602 dbSNP
rs149314459 2605 dbSNP
rs769370438 2608 dbSNP
rs1283098361 2617 dbSNP
rs1198602938 2619 dbSNP
rs1342986724 2620 dbSNP
rs562800351 2631 dbSNP
rs569215359 2632 dbSNP
rs1446579321 2643 dbSNP
rs1216591831 2651 dbSNP
rs1224165239 2657 dbSNP
rs1486837229 2660 dbSNP
rs967057298 2664 dbSNP
rs1276539540 2667 dbSNP
rs1293924862 2674 dbSNP
rs551219305 2687 dbSNP
rs531228565 2696 dbSNP
rs1320881726 2712 dbSNP
rs1462173640 2718 dbSNP
rs1394764408 2730 dbSNP
rs1402085742 2738 dbSNP
rs1176580944 2739 dbSNP
rs1303113646 2755 dbSNP
rs1470660304 2764 dbSNP
rs1009855729 2774 dbSNP
rs966165682 2779 dbSNP
rs1350313904 2786 dbSNP
rs56184537 2814 dbSNP
rs1019114222 2820 dbSNP
rs1169429622 2822 dbSNP
rs1286481185 2830 dbSNP
rs1475625755 2830 dbSNP
rs1320035653 2833 dbSNP
rs1221781103 2835 dbSNP
rs1008033159 2839 dbSNP
rs1374532235 2840 dbSNP
rs1396695065 2844 dbSNP
rs570454316 2845 dbSNP
rs1230947711 2852 dbSNP
rs1469352307 2854 dbSNP
rs1158755724 2865 dbSNP
rs889560335 2866 dbSNP
rs1409654280 2868 dbSNP
rs139650162 2870 dbSNP
rs745468434 2871 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gacccucauaccccCGUCCCu 5'
                        |||||| 
Target 5' -------------aGCAGGGa 3'
1 - 8
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000310954.6 | 3UTR | agcagggaauuggauugaagacuuu
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
110 hsa-miR-6752-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT152341 TNFSF9 TNF superfamily member 9 2 2
MIRT273594 SP1 Sp1 transcription factor 2 2
MIRT291927 TPM4 tropomyosin 4 2 4
MIRT311186 ANKRD33B ankyrin repeat domain 33B 2 4
MIRT378521 CDKN1A cyclin dependent kinase inhibitor 1A 2 4
MIRT452467 SORCS2 sortilin related VPS10 domain containing receptor 2 2 2
MIRT478636 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT496343 TMEM81 transmembrane protein 81 2 2
MIRT496646 MFAP3 microfibril associated protein 3 2 2
MIRT496711 DNAJC30 DnaJ heat shock protein family (Hsp40) member C30 2 2
MIRT499242 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT519777 ZNF354B zinc finger protein 354B 2 6
MIRT520883 STX17 syntaxin 17 2 2
MIRT522476 ZAK mitogen-activated protein kinase kinase kinase 20 2 2
MIRT523587 G3BP2 G3BP stress granule assembly factor 2 2 6
MIRT525240 KCNJ12 potassium voltage-gated channel subfamily J member 12 2 2
MIRT527025 PABPN1L poly(A) binding protein nuclear 1 like, cytoplasmic 2 2
MIRT527709 IL17REL interleukin 17 receptor E like 2 2
MIRT530778 GPD1 glycerol-3-phosphate dehydrogenase 1 2 2
MIRT531883 SCN1B sodium voltage-gated channel beta subunit 1 2 2
MIRT533043 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT535062 PPP2R5D protein phosphatase 2 regulatory subunit B'delta 2 4
MIRT536512 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT543793 RALGAPB Ral GTPase activating protein non-catalytic beta subunit 2 2
MIRT563977 HCFC1 host cell factor C1 2 2
MIRT569472 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT570600 NFIX nuclear factor I X 2 2
MIRT571402 MED4 mediator complex subunit 4 2 2
MIRT608418 PPIC peptidylprolyl isomerase C 2 6
MIRT608928 REXO2 RNA exonuclease 2 2 4
MIRT609357 ZNF664 zinc finger protein 664 2 2
MIRT611189 WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 2 4
MIRT615266 DPF2 double PHD fingers 2 2 2
MIRT615408 VDAC2 voltage dependent anion channel 2 2 2
MIRT616323 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT616566 ZNF512B zinc finger protein 512B 2 2
MIRT616745 TAZ tafazzin 2 2
MIRT617316 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT620030 NFAM1 NFAT activating protein with ITAM motif 1 2 2
MIRT621166 RTTN rotatin 2 2
MIRT623501 KCNQ3 potassium voltage-gated channel subfamily Q member 3 2 2
MIRT623524 KCNK10 potassium two pore domain channel subfamily K member 10 2 2
MIRT629683 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 2
MIRT630795 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT634638 HIP1 huntingtin interacting protein 1 2 4
MIRT636788 RAB40B RAB40B, member RAS oncogene family 2 2
MIRT640332 DAAM2 dishevelled associated activator of morphogenesis 2 2 2
MIRT640557 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT643319 TMEM151B transmembrane protein 151B 2 2
MIRT643991 DUSP28 dual specificity phosphatase 28 2 2
MIRT644618 CD300E CD300e molecule 2 2
MIRT646445 XRCC2 X-ray repair cross complementing 2 2 2
MIRT648020 SLCO4C1 solute carrier organic anion transporter family member 4C1 2 2
MIRT648077 ZMIZ2 zinc finger MIZ-type containing 2 2 2
MIRT649618 ITPKC inositol-trisphosphate 3-kinase C 2 2
MIRT650414 ZNF442 zinc finger protein 442 2 2
MIRT650850 SEMA4G semaphorin 4G 2 2
MIRT654694 PSMB5 proteasome subunit beta 5 2 2
MIRT655512 PAIP2B poly(A) binding protein interacting protein 2B 2 2
MIRT657620 GRAP2 GRB2-related adaptor protein 2 2 2
MIRT658009 GALNT10 polypeptide N-acetylgalactosaminyltransferase 10 2 2
MIRT658329 FAM83F family with sequence similarity 83 member F 2 2
MIRT658832 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT658920 DPY19L4 dpy-19 like 4 2 2
MIRT661058 RPL18A ribosomal protein L18a 2 2
MIRT662342 MYLK3 myosin light chain kinase 3 2 2
MIRT663451 FBXO2 F-box protein 2 2 2
MIRT676752 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 4
MIRT684705 LRRD1 leucine rich repeats and death domain containing 1 2 2
MIRT687247 PDHB pyruvate dehydrogenase E1 beta subunit 2 2
MIRT693881 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT693922 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT695921 ZNF174 zinc finger protein 174 2 2
MIRT702867 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT708863 TMSB4X thymosin beta 4, X-linked 2 2
MIRT708936 CRY2 cryptochrome circadian clock 2 2 2
MIRT709476 FAXC failed axon connections homolog 2 2
MIRT709752 UBD ubiquitin D 2 2
MIRT710128 VANGL2 VANGL planar cell polarity protein 2 2 2
MIRT710274 FAM107A family with sequence similarity 107 member A 2 2
MIRT711146 TMEM174 transmembrane protein 174 2 2
MIRT712582 ATP2B4 ATPase plasma membrane Ca2+ transporting 4 2 2
MIRT712648 TXNL4A thioredoxin like 4A 2 2
MIRT713325 TMEM44 transmembrane protein 44 2 2
MIRT713413 PEX16 peroxisomal biogenesis factor 16 2 2
MIRT713891 RNF19B ring finger protein 19B 2 2
MIRT714549 COL14A1 collagen type XIV alpha 1 chain 2 2
MIRT714809 ARHGEF19 Rho guanine nucleotide exchange factor 19 2 2
MIRT714840 SCAMP2 secretory carrier membrane protein 2 2 2
MIRT715779 DDX42 DEAD-box helicase 42 2 2
MIRT715795 TBL3 transducin beta like 3 2 2
MIRT716088 RNF150 ring finger protein 150 2 2
MIRT716712 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT716737 APOL6 apolipoprotein L6 2 2
MIRT717069 MTMR6 myotubularin related protein 6 2 2
MIRT718185 HLCS holocarboxylase synthetase 2 2
MIRT719386 SECTM1 secreted and transmembrane 1 2 2
MIRT720679 SLC39A13 solute carrier family 39 member 13 2 2
MIRT721315 FAM58A cyclin Q 2 2
MIRT721396 LDLRAD4 low density lipoprotein receptor class A domain containing 4 2 2
MIRT721896 ITPR2 inositol 1,4,5-trisphosphate receptor type 2 2 2
MIRT722442 ZBTB7B zinc finger and BTB domain containing 7B 2 2
MIRT723009 FADS1 fatty acid desaturase 1 2 2
MIRT723675 CTC1 CST telomere replication complex component 1 2 2
MIRT723774 ROBO4 roundabout guidance receptor 4 2 2
MIRT723814 OR1L8 olfactory receptor family 1 subfamily L member 8 2 2
MIRT723959 TMEM184A transmembrane protein 184A 2 2
MIRT724449 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT724798 C1D C1D nuclear receptor corepressor 2 2
MIRT725626 CAMKV CaM kinase like vesicle associated 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6752-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-6752-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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