pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF582   
Synonyms -
Description zinc finger protein 582
Transcript NM_144690   
Expression
Putative miRNA Targets on ZNF582
3'UTR of ZNF582
(miRNA target sites are highlighted)
>ZNF582|NM_144690|3'UTR
   1 GCTAATTGTGACTGTGACTTACTTCTCCCTCTTGGAGAAAGACTTGAAGAATGTAATGCCAGTGACAATGCCTTCATTCA
  81 GAGGTAAGCCTTTATCCTAAGTCTGAAAATTCATATCAAAGAAAATTTTATGGATGTAAATTGTTCAGATCATAATTGTC
 161 AAAAATGCTGGGAAAGGTTGGGAGAAATTTTATTTCTAACACATTCCAGAACCACATTTTCTAACCACAGTGTAGTAATT
 241 TTATCAAGAGCAAAAGTTATAGTTTTCTTACAAGTTAAAAAAACAGCCAGATTATCATTTGCTTAACAAAGAAATCATGC
 321 AATTACCATAAATGGTAATGAAAAGAATGAATTGAGAGTTTAACATGCCAAGAGATGTGAAATGTGGCCAAAGAGATGTG
 401 AGGGTAAGGGGAAAGCCAAAGCTACACTGGAGGAATTTTTATAGCCTTTGAATGCATGCATATACATGAAAATCTGAAAG
 481 ATAAACTCATATGCACTAAACATGCTATTCAAGTCTACCAAACATCCAGGCAGTGAAAGAAGAAAGTAACAGAAAATGAT
 561 GAAATAAAGAGACCATCTTACAATAATCTCAGTTTTTGTTTCTTTCTGATCCAGAAATAATCTAAATTTAGGAGAATATT
 641 TCTTAATTTCCACATTGTTACATTGTTTTATGTGACTGGCACAGACAACCATTGGTTGTCATCCCAGCAGCCATACCCAA
 721 TTCCCCTTGTTATTGGCAGCATCTGTGTCTTGCCTTGGACTCTGAGAATATCAGATGCTAATTTTCCAGTCTCCTGTGCA
 801 GCACAGTATGGCCAGTATCTCCCAGTGTTGCTCAGTGGAATCTGCCGGGGCTTCTGGGAAAGATTTTCCTCATTCAGAAG
 881 AGACAGGTTTATCATGAAGACTTCCTCCTCTCTCACTTCCTGCTTTTAAACATTTTTATATAAGAACATGATGCCTGAAG
 961 CTGCTGCAGCTGTCTTGGAACCAAGAAGAGAAAAAAGTGGACCTCAGAGAAGCTGACCCAGAGCCTGAGAAGACTCAGCT
1041 ACTAGGCCAATTCTGGAACTGCCTTTTTGATGCCTTGTTATCTGAGAAAAATAAAACTTGATTGCTCAGTTAAAAAAAAA
1121 AAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agGACCUACGUUUAAAAu 5'
            :|||: | ||||||| 
Target 5' ggTTGGGAG-AAATTTTa 3'
176 - 192 151.00 -8.40
2
miRNA  3' agGACCUACGUUUAAAAu 5'
            ||||| | :|||||| 
Target 5' caCTGGA-G-GAATTTTt 3'
425 - 440 138.00 -8.90
3
miRNA  3' aggacCUACGUUUAAAAu 5'
               ||||| |||||| 
Target 5' tatcaGATGCTAATTTTc 3'
769 - 786 133.00 -7.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN15627132 1 COSMIC
COSN31573308 9 COSMIC
COSN30535779 12 COSMIC
COSN27006277 23 COSMIC
COSN30533130 30 COSMIC
COSN30471508 41 COSMIC
COSN30148035 49 COSMIC
COSN512295 64 COSMIC
COSN31514503 80 COSMIC
COSN30451830 90 COSMIC
COSN28759050 105 COSMIC
COSN30454705 112 COSMIC
COSN30493191 127 COSMIC
COSN31577164 155 COSMIC
COSN18841265 240 COSMIC
COSN1772436 284 COSMIC
COSN24168320 638 COSMIC
COSN17784398 996 COSMIC
COSN6147768 1100 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1401240132 1 dbSNP
rs774242972 3 dbSNP
rs934462183 14 dbSNP
rs552644394 17 dbSNP
rs768629752 17 dbSNP
rs1436352825 18 dbSNP
rs778985641 20 dbSNP
rs1207483306 21 dbSNP
rs546969537 25 dbSNP
rs749854961 27 dbSNP
rs780687994 29 dbSNP
rs756605918 30 dbSNP
rs775214433 30 dbSNP
rs1195351744 31 dbSNP
rs1483394070 34 dbSNP
rs746214752 36 dbSNP
rs780903675 38 dbSNP
rs370076182 40 dbSNP
rs201852676 44 dbSNP
rs375979929 48 dbSNP
rs547250806 55 dbSNP
rs978638346 56 dbSNP
rs1051576149 67 dbSNP
rs933845725 79 dbSNP
rs139696388 86 dbSNP
rs1359932192 93 dbSNP
rs1461635677 99 dbSNP
rs910647856 135 dbSNP
rs1379488146 136 dbSNP
rs1448068679 139 dbSNP
rs757285622 146 dbSNP
rs561592046 158 dbSNP
rs550961184 159 dbSNP
rs1280074273 177 dbSNP
rs574902105 185 dbSNP
rs1181611882 191 dbSNP
rs987845019 195 dbSNP
rs1255766528 196 dbSNP
rs993740755 201 dbSNP
rs1458924948 207 dbSNP
rs1179087897 209 dbSNP
rs1239240587 222 dbSNP
rs1208639910 226 dbSNP
rs150611967 229 dbSNP
rs1312059753 230 dbSNP
rs962749983 237 dbSNP
rs1192883520 238 dbSNP
rs1285479294 246 dbSNP
rs956535735 250 dbSNP
rs1230594495 254 dbSNP
rs57436916 260 dbSNP
rs1402800366 266 dbSNP
rs1466448822 284 dbSNP
rs528205086 284 dbSNP
rs1002378318 285 dbSNP
rs1348529702 288 dbSNP
rs1439159147 290 dbSNP
rs905574851 290 dbSNP
rs971576846 291 dbSNP
rs191132589 293 dbSNP
rs1380718302 301 dbSNP
rs141915541 306 dbSNP
rs895505153 309 dbSNP
rs1319624451 311 dbSNP
rs1199007373 316 dbSNP
rs1288833195 319 dbSNP
rs1223601667 321 dbSNP
rs1447277939 322 dbSNP
rs1053009890 335 dbSNP
rs934534071 343 dbSNP
rs1487995305 345 dbSNP
rs1191656752 346 dbSNP
rs1426012690 349 dbSNP
rs1478245905 351 dbSNP
rs1162910679 353 dbSNP
rs1411998440 355 dbSNP
rs925864070 359 dbSNP
rs1043249488 368 dbSNP
rs1324779275 376 dbSNP
rs1360515023 380 dbSNP
rs1320092631 387 dbSNP
rs573466342 398 dbSNP
rs1017116690 401 dbSNP
rs1004218120 403 dbSNP
rs1410888550 407 dbSNP
rs1218810846 410 dbSNP
rs887072360 415 dbSNP
rs910624306 422 dbSNP
rs186339964 424 dbSNP
rs554977130 446 dbSNP
rs1290476329 455 dbSNP
rs954697365 460 dbSNP
rs919232299 474 dbSNP
rs775077596 481 dbSNP
rs899698365 486 dbSNP
rs761240834 487 dbSNP
rs1416063978 493 dbSNP
rs963556762 510 dbSNP
rs1187020592 511 dbSNP
rs577865542 515 dbSNP
rs1016524147 526 dbSNP
rs181287430 531 dbSNP
rs1211076254 538 dbSNP
rs771932341 552 dbSNP
rs1380197766 554 dbSNP
rs1418366749 556 dbSNP
rs1463848421 571 dbSNP
rs1361833674 575 dbSNP
rs1382305401 581 dbSNP
rs1333077637 583 dbSNP
rs1338385608 588 dbSNP
rs539020935 595 dbSNP
rs1267827036 596 dbSNP
rs753008647 602 dbSNP
rs767867801 603 dbSNP
rs762537135 607 dbSNP
rs1354495177 608 dbSNP
rs1200003825 623 dbSNP
rs567001452 623 dbSNP
rs9304775 624 dbSNP
rs1237906803 650 dbSNP
rs927618457 651 dbSNP
rs1180983875 654 dbSNP
rs769543007 657 dbSNP
rs1381550605 661 dbSNP
rs1453823821 662 dbSNP
rs1171524049 664 dbSNP
rs534996240 668 dbSNP
rs981908375 678 dbSNP
rs947793754 682 dbSNP
rs916302043 687 dbSNP
rs761462902 700 dbSNP
rs1362633155 703 dbSNP
rs1444384925 705 dbSNP
rs1336132161 707 dbSNP
rs1311356766 719 dbSNP
rs1336330375 720 dbSNP
rs1232583570 722 dbSNP
rs776270988 725 dbSNP
rs962811706 727 dbSNP
rs1347251385 731 dbSNP
rs1201195834 732 dbSNP
rs983429200 736 dbSNP
rs951449979 737 dbSNP
rs1239285390 743 dbSNP
rs1433069154 749 dbSNP
rs1197394754 750 dbSNP
rs1375372735 757 dbSNP
rs998531832 758 dbSNP
rs1176699149 761 dbSNP
rs1399164848 763 dbSNP
rs1030056618 764 dbSNP
rs998170007 765 dbSNP
rs189339436 768 dbSNP
rs1387638837 771 dbSNP
rs1299126817 773 dbSNP
rs1332843152 774 dbSNP
rs1224280273 785 dbSNP
rs1277794819 786 dbSNP
rs1316335441 788 dbSNP
rs369239215 793 dbSNP
rs1326264802 794 dbSNP
rs567821329 796 dbSNP
rs1043021011 800 dbSNP
rs1270179509 808 dbSNP
rs778513547 809 dbSNP
rs1199578847 815 dbSNP
rs1422434127 821 dbSNP
rs888984404 824 dbSNP
rs1172402853 834 dbSNP
rs551148729 840 dbSNP
rs1010753916 844 dbSNP
rs148106998 846 dbSNP
rs768539021 847 dbSNP
rs1297610270 863 dbSNP
rs1338543585 871 dbSNP
rs1448143373 873 dbSNP
rs1220629361 875 dbSNP
rs919343446 884 dbSNP
rs143780952 890 dbSNP
rs1243142824 893 dbSNP
rs1267731384 894 dbSNP
rs1489281072 896 dbSNP
rs942070500 899 dbSNP
rs1220309387 901 dbSNP
rs777325359 901 dbSNP
rs1261777375 912 dbSNP
rs1487030436 913 dbSNP
rs981068223 924 dbSNP
rs113330226 931 dbSNP
rs1025110428 933 dbSNP
rs551116359 936 dbSNP
rs1370007974 938 dbSNP
rs1425167150 939 dbSNP
rs959746182 940 dbSNP
rs1401997891 945 dbSNP
rs183857028 948 dbSNP
rs143231094 952 dbSNP
rs1303935947 958 dbSNP
rs73621239 966 dbSNP
rs904214504 967 dbSNP
rs139218868 970 dbSNP
rs1007449098 972 dbSNP
rs889050453 975 dbSNP
rs1350860730 984 dbSNP
rs1217388724 997 dbSNP
rs951733616 997 dbSNP
rs146905730 1001 dbSNP
rs1179776013 1006 dbSNP
rs1244680501 1019 dbSNP
rs1445020010 1025 dbSNP
rs1029892481 1026 dbSNP
rs1421566726 1032 dbSNP
rs1457537445 1032 dbSNP
rs1358688037 1035 dbSNP
rs1464691943 1050 dbSNP
rs563383325 1052 dbSNP
rs1383901053 1071 dbSNP
rs1446603771 1080 dbSNP
rs1170551335 1082 dbSNP
rs746118451 1084 dbSNP
rs1224939414 1087 dbSNP
rs1307022233 1092 dbSNP
rs377101982 1096 dbSNP
rs964007660 1103 dbSNP
rs752136868 1109 dbSNP
rs1036444719 1111 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000301310.4 | 3UTR | AAAUGCUGGGAAAGGUUGGGAGAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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