pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol MYOZ3   
Synonyms CS-3, CS3, FRP3
Description myozenin 3
Transcript NM_001122853   
Other Transcripts NM_133371   
Expression
Putative miRNA Targets on MYOZ3
3'UTR of MYOZ3
(miRNA target sites are highlighted)
>MYOZ3|NM_001122853|3'UTR
   1 CCCTAGCCTGAATCTTCAGTTCCCCAGTCTCGGGGGCCTGGTAACATCCGGAGCCAAGACTTGTGGACAGCACTTCACAG
  81 TTGAAGAAGGGCCTTCACACACAAAACCTGATTGCAAATGGCTTCAGAGGTCACCAAGTTCAGTCGTCCCAAAACATGGG
 161 TGTGTTTCAAAATTACCTGGGGATGTTGTTCCAAATCCAGACAACTGGACTGTCCCAGACTTGCAGCATCAGAGTCTCCT
 241 GAGTCGAGGAATCTGTATTATTAATAGCAACCAGGGCCGGGTGTCGTGGCTCACGCCTGTCATCCCAGCACTTTGGGAGG
 321 CCGAGGCAGGAGGATCACCTGAGGTCAGGAGTTTGAGACCAGTCTGGCCAAAATAGTGGAACCCCGTCGCTACTAAAAAT
 401 ACAAAAATGAGTCGGACATGGTGGTGCATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGACAGGAGAATCACTTGAACT
 481 AGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCGCCACTGCACCCCAGCCTGGACAACAGAGTGAGACTCCTTCTCAAAAG
 561 TAAATAAATAAATAGCAACCAGTACTCCAGGTGATTCCAGCATAACTTATCCATGGTTTGTGTCATTAGGAGTCCACATC
 641 CACACCTCTGCTCTTTCCTGTTCCTGTAGTGTACACTCCCCCGGTGACAGGGTGCTCACTGGCACCCCATCTTCCTGTGA
 721 ATAACTCAAATAATTAGAAAATGTTCCTTTTACTGAGATGCAGTTGGTCTTCATCTATTCATGCTCTAAACAGTTCCTAA
 801 GCGCTGACTGTGCGCTAGACACTGCCAGGCCCGGGCCTCGAGGAGGAAAAGACAGTAGGGAAGACATTATAGAGCATGAA
 881 GTCACCATAATTTTCCCTAAAGCATGCTTATTGACAATTGAGGAACAAAGTGTTGTGGAGCAGAAGAAGGAGTCCCTCAC
 961 CCTAGGTGTGAGATGGGATTCTGGAAGCTTCCTGAAGGATTTGAGTGGGACCTTGTGGGAGGCGTGAGAGTCCATGAAGG
1041 GGGTGTGAGGGGGAGGGTATTTCTGGAAAGTGGACCAGCATGTGCAAAAATATGGAACTGAGCACGGGTGCAGGGTGTTC
1121 TGCAGAAGGGAGAAGGCTGTGCTAGAGGAGCCAGTGAGGGCCAGCATGGGGTGGGCTTCACTAAGGAAATGGGGAAGGTT
1201 TTAGTGATGGGTCTTGCTGGGTGCTGTGTGGGGCGCATATTGGAGAAGGGTAATGCCAGAAGCCAGGAAGCCTGCAAGGG
1281 ATGAGGCCATGGGAATGGAGAGAAGGGGCCACCCACTGGGCACCTAACAGGACAGGTGCAAAGTGGGGTGCTTATTAAGA
1361 TTCCTTCTTTCCACTCCATTTTGAGCAGGCTGCTTAAAGTGGTGGTGATGATGATGATGATGATGGCAGCTTTATATCGA
1441 GTGCCTCAGTGCTTGGGCTGGTAGTAGTTTCTCTACATATCTTATTTCTAATTCTCAGAACAACCCTGAGAGAAAGATAT
1521 TGTTGTCCCCACTTTACAGATGTGGATATTTAGGCCAAAAGGAGGAAGTGACTTGTCCAGGGGCAGACACCAAATGGGAA
1601 TCTGATTCCAGTGGATGTCTCTTTTCAGTGCACTGGGTGGTCAATGCCCACTCGCTCTGAAATCATCTGACTGTGATGCC
1681 CTGCCTTGGAGTTTAGAAGTTGAGTGCAGGCTTGGGAGTCAGACTGGATGGGGTAGGTTCTAACTCTGCCACTGCTAGCC
1761 GGATGAACTTGAGCAAGTCATTTCACATCTCCGAGCCTCTGTTTCTCCAAGTGTAAGATGAGGACAAGTATAAAACCTCC
1841 TTTATGGGTTTGTTGTGAACACAGTGCAGGGCACATTTATAATAAGAGCTCAGTCAATGGTAGGTTTCATGCAACTGCTG
1921 CTCTAGGCTGGAAAAGTTGTTCTTGCACTGGATGCAGCATGAGAAGCTGGCTGCTAAGATGTCACTGGGGGTCACTAAAG
2001 CTGAAGCCTGAAGGAAAGCCTCTCATTGCTGTAGAGCTCTCCCTGCCTCTCTCTCTGGGGGCGATGGGGAAGGTCAGGAG
2081 TCCAGCCCATTCCCAGGGTGTGTGGGATAGCGATTGCATTTTCCTTTTGCTCTGGAGTTTCACTCCCCTTCTGGGTCCCA
2161 AGGGCCCAATGGCCTGACTTTTAGAATTGCTTGCAATTGGTGTTTTCTCTTGAATTTGGGGGCTGCCATTTAAAGCCAGG
2241 TTTCCATGAGCTGAAGACCAGCCATTCAAGAATCTGAAAAGTAGACAAGAGGACTCCAGTTGCCTCAGGTTGGTTCTGCT
2321 GTGCTCTGGAAAGTAACTGCAGCCACCAGGTATGAAAAGGAGCCTGGTGGGGAGACCACTGCACCCAAAACAAATCCTTT
2401 CTTCTTCTGAGAATGTGACTTTTTCTGGTGTTGTAAAAAAGAAAAAAAAAAGAATGCTCATTGTAAAAATAAAAAAATAA
2481 TAATAAGCAAGGAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accacGUUUUCAUUAAC---ACCAAAAa 5'
               | ||:| ||| |    |||||| 
Target 5' cttcaCTAAGGAAATGGGGAAGGTTTTa 3'
1176 - 1203 128.00 -6.40
2
miRNA  3' accACGUUUUCAUUAAC----ACCAAAAa 5'
             | :|:|| |: |||    |||| || 
Target 5' actTTTAGAATTGCTTGCAATTGGTGTTt 3'
2177 - 2205 128.00 -5.29
3
miRNA  3' accacGUUUUC---A--UUAAC--------ACCAAAAa 5'
               |||:||   |  |:|||        ||||| | 
Target 5' gtagaCAAGAGGACTCCAGTTGCCTCAGGTTGGTTCTg 3'
2281 - 2318 116.00 -9.22
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30688742 7 COSMIC
COSN31593076 20 COSMIC
COSN30105392 29 COSMIC
COSN30114773 34 COSMIC
COSN5852916 37 COSMIC
COSN31504076 50 COSMIC
COSN26985743 51 COSMIC
COSN30500165 55 COSMIC
COSN30514959 59 COSMIC
COSN7880412 74 COSMIC
COSN30127498 97 COSMIC
COSN30577959 138 COSMIC
COSN30165862 147 COSMIC
COSN19709681 166 COSMIC
COSN29841266 1002 COSMIC
COSN29374833 1273 COSMIC
COSN20161377 1317 COSMIC
COSN24786400 1826 COSMIC
COSN16989518 2154 COSMIC
COSN29528604 2452 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs773158786 2 dbSNP
rs146746572 3 dbSNP
rs1174362353 4 dbSNP
rs1411207341 5 dbSNP
rs767297912 8 dbSNP
rs752702318 11 dbSNP
rs1234262203 13 dbSNP
rs1268618336 20 dbSNP
rs1315490560 21 dbSNP
rs1320405738 24 dbSNP
rs374178828 25 dbSNP
rs755863416 27 dbSNP
rs763846274 29 dbSNP
rs112408743 32 dbSNP
rs778605607 33 dbSNP
rs745310342 36 dbSNP
rs757943119 37 dbSNP
rs1188352915 38 dbSNP
rs377663921 46 dbSNP
rs1421933892 47 dbSNP
rs747515819 50 dbSNP
rs769332536 51 dbSNP
rs777120044 52 dbSNP
rs571469572 54 dbSNP
rs538511702 56 dbSNP
rs777068489 81 dbSNP
rs1051572178 82 dbSNP
rs1401027095 83 dbSNP
rs1300747737 96 dbSNP
rs189200570 100 dbSNP
rs1424559328 103 dbSNP
rs1170479633 109 dbSNP
rs1477123631 113 dbSNP
rs902439119 141 dbSNP
rs1194447948 143 dbSNP
rs1024312547 146 dbSNP
rs1202405321 147 dbSNP
rs897889313 149 dbSNP
rs999434710 160 dbSNP
rs573539965 164 dbSNP
rs111890776 166 dbSNP
rs79703932 170 dbSNP
rs113787782 173 dbSNP
rs1280075433 175 dbSNP
rs1218666543 183 dbSNP
rs1339367973 184 dbSNP
rs1310060793 185 dbSNP
rs1397400583 186 dbSNP
rs73276196 187 dbSNP
rs76245815 198 dbSNP
rs1464434941 209 dbSNP
rs1403020082 216 dbSNP
rs375816009 229 dbSNP
rs1298192702 232 dbSNP
rs952212555 239 dbSNP
rs1472471225 241 dbSNP
rs1003710549 246 dbSNP
rs1025850949 247 dbSNP
rs1424615032 251 dbSNP
rs1305130724 254 dbSNP
rs1237848760 255 dbSNP
rs75800382 266 dbSNP
rs1197758876 272 dbSNP
rs1018241788 274 dbSNP
rs1348208831 278 dbSNP
rs1259835085 279 dbSNP
rs544765010 280 dbSNP
rs1263161648 282 dbSNP
rs1270710209 284 dbSNP
rs909858779 286 dbSNP
rs750168793 287 dbSNP
rs975465606 293 dbSNP
rs760454800 295 dbSNP
rs1379580349 296 dbSNP
rs1246154316 300 dbSNP
rs1332562890 305 dbSNP
rs1405278163 307 dbSNP
rs1389297769 309 dbSNP
rs558224474 323 dbSNP
rs1458522950 324 dbSNP
rs766328216 325 dbSNP
rs1467222864 333 dbSNP
rs556852241 336 dbSNP
rs1437525328 340 dbSNP
rs1239755152 344 dbSNP
rs1253844123 347 dbSNP
rs1182334346 348 dbSNP
rs577466492 359 dbSNP
rs1265241601 383 dbSNP
rs866594968 386 dbSNP
rs977147803 387 dbSNP
rs572892350 389 dbSNP
rs935211543 390 dbSNP
rs1237527808 403 dbSNP
rs111415534 410 dbSNP
rs1410968631 414 dbSNP
rs935811298 415 dbSNP
rs563111321 420 dbSNP
rs1326141359 425 dbSNP
rs1387388170 429 dbSNP
rs763898351 430 dbSNP
rs1459390173 435 dbSNP
rs530298640 437 dbSNP
rs866407495 439 dbSNP
rs542417575 448 dbSNP
rs192102282 456 dbSNP
rs1044775148 461 dbSNP
rs906273826 468 dbSNP
rs1375818397 473 dbSNP
rs950016117 476 dbSNP
rs527744496 480 dbSNP
rs1261820502 483 dbSNP
rs1025777425 497 dbSNP
rs897812626 500 dbSNP
rs993499820 505 dbSNP
rs113580160 506 dbSNP
rs1218961094 513 dbSNP
rs146728320 514 dbSNP
rs1363845771 519 dbSNP
rs1277059690 523 dbSNP
rs112084120 524 dbSNP
rs777293250 527 dbSNP
rs1296381530 536 dbSNP
rs112197156 540 dbSNP
rs1215621328 541 dbSNP
rs55723763 556 dbSNP
rs1273893809 558 dbSNP
rs1413629798 561 dbSNP
rs76816714 561 dbSNP
rs997763947 565 dbSNP
rs975819153 578 dbSNP
rs368664919 582 dbSNP
rs536063222 588 dbSNP
rs1021646102 594 dbSNP
rs1174165601 603 dbSNP
rs1422880550 607 dbSNP
rs967031182 607 dbSNP
rs781648089 621 dbSNP
rs746414508 624 dbSNP
rs1190856430 626 dbSNP
rs1478531556 628 dbSNP
rs1475926663 631 dbSNP
rs1029700696 636 dbSNP
rs955424570 638 dbSNP
rs1281160767 644 dbSNP
rs1204752921 649 dbSNP
rs1317820562 657 dbSNP
rs1276878810 658 dbSNP
rs1220501363 667 dbSNP
rs1181685825 669 dbSNP
rs977118097 670 dbSNP
rs1416308522 671 dbSNP
rs1283761544 673 dbSNP
rs925657907 677 dbSNP
rs78813230 683 dbSNP
rs770314761 684 dbSNP
rs1335904714 690 dbSNP
rs143023536 694 dbSNP
rs548204031 700 dbSNP
rs1168487655 707 dbSNP
rs117407806 709 dbSNP
rs1399710668 711 dbSNP
rs1315824965 718 dbSNP
rs1471585466 732 dbSNP
rs184315576 738 dbSNP
rs1238890346 740 dbSNP
rs1184540312 744 dbSNP
rs1457624281 745 dbSNP
rs1256642444 755 dbSNP
rs1201086961 756 dbSNP
rs1045092013 765 dbSNP
rs1289237603 767 dbSNP
rs1045648555 768 dbSNP
rs1346641685 785 dbSNP
rs906200224 788 dbSNP
rs1453053511 790 dbSNP
rs1375887198 794 dbSNP
rs1329157078 798 dbSNP
rs1463455363 803 dbSNP
rs80342032 804 dbSNP
rs1353481937 806 dbSNP
rs929275503 814 dbSNP
rs561371286 815 dbSNP
rs576748956 833 dbSNP
rs1007658997 834 dbSNP
rs768920629 840 dbSNP
rs1481228425 843 dbSNP
rs1246689076 846 dbSNP
rs1219406223 847 dbSNP
rs1286579920 850 dbSNP
rs1323617307 857 dbSNP
rs544951756 861 dbSNP
rs1017144250 865 dbSNP
rs1210606116 869 dbSNP
rs59423491 874 dbSNP
rs1392966588 876 dbSNP
rs575151861 878 dbSNP
rs998129867 889 dbSNP
rs1021208037 891 dbSNP
rs146530101 912 dbSNP
rs1303291492 914 dbSNP
rs977448954 918 dbSNP
rs1378143245 919 dbSNP
rs1031704467 933 dbSNP
rs1469155778 935 dbSNP
rs1420075802 940 dbSNP
rs1425038089 942 dbSNP
rs760496942 953 dbSNP
rs998481292 964 dbSNP
rs1269683473 974 dbSNP
rs140436936 977 dbSNP
rs150409584 992 dbSNP
rs189743047 993 dbSNP
rs1288450030 1002 dbSNP
rs1240865499 1007 dbSNP
rs1317300063 1011 dbSNP
rs564537913 1013 dbSNP
rs947925263 1016 dbSNP
rs1217392263 1023 dbSNP
rs181230855 1024 dbSNP
rs186064341 1025 dbSNP
rs201920786 1035 dbSNP
rs149822616 1036 dbSNP
rs59888631 1036 dbSNP
rs199796716 1038 dbSNP
rs1335146943 1041 dbSNP
rs1236953251 1048 dbSNP
rs1358180959 1048 dbSNP
rs1290301902 1056 dbSNP
rs1281408649 1057 dbSNP
rs971248194 1060 dbSNP
rs1174474372 1066 dbSNP
rs1351585938 1072 dbSNP
rs981691277 1073 dbSNP
rs919137653 1076 dbSNP
rs60178757 1094 dbSNP
rs1233866624 1096 dbSNP
rs929245862 1099 dbSNP
rs1192975650 1100 dbSNP
rs1476898548 1101 dbSNP
rs1278576837 1103 dbSNP
rs1486877175 1105 dbSNP
rs1212100047 1106 dbSNP
rs1483079620 1107 dbSNP
rs1255189114 1109 dbSNP
rs1207805961 1124 dbSNP
rs938984756 1129 dbSNP
rs1283876051 1133 dbSNP
rs1217443264 1143 dbSNP
rs1337786997 1148 dbSNP
rs58379139 1154 dbSNP
rs886853068 1165 dbSNP
rs1179039687 1168 dbSNP
rs1471172318 1172 dbSNP
rs941155327 1174 dbSNP
rs1464076232 1177 dbSNP
rs909206000 1187 dbSNP
rs1374851735 1191 dbSNP
rs1439871879 1202 dbSNP
rs1038913093 1209 dbSNP
rs943386279 1215 dbSNP
rs529895191 1235 dbSNP
rs74732480 1236 dbSNP
rs1395673552 1243 dbSNP
rs1263613691 1250 dbSNP
rs1197952170 1252 dbSNP
rs901956018 1254 dbSNP
rs997659142 1256 dbSNP
rs1227577211 1277 dbSNP
rs189542653 1279 dbSNP
rs1042580024 1281 dbSNP
rs902743419 1287 dbSNP
rs1330914870 1288 dbSNP
rs759501153 1291 dbSNP
rs1001130189 1294 dbSNP
rs1032624244 1296 dbSNP
rs532767068 1298 dbSNP
rs566544126 1302 dbSNP
rs1022679614 1312 dbSNP
rs971558006 1315 dbSNP
rs11956786 1316 dbSNP
rs1399308170 1324 dbSNP
rs1168547282 1325 dbSNP
rs1350387354 1344 dbSNP
rs1457489587 1349 dbSNP
rs558349403 1352 dbSNP
rs957651386 1356 dbSNP
rs1251172022 1364 dbSNP
rs1165707993 1378 dbSNP
rs1026119297 1380 dbSNP
rs1198102295 1383 dbSNP
rs1251997831 1384 dbSNP
rs1243517503 1394 dbSNP
rs1022524393 1406 dbSNP
rs372048883 1406 dbSNP
rs554780841 1406 dbSNP
rs570501476 1409 dbSNP
rs969260231 1417 dbSNP
rs950583976 1419 dbSNP
rs1263251788 1424 dbSNP
rs1247697888 1428 dbSNP
rs11950324 1439 dbSNP
rs180730968 1440 dbSNP
rs11950325 1445 dbSNP
rs575215522 1448 dbSNP
rs866983557 1456 dbSNP
rs1330187110 1459 dbSNP
rs908217943 1463 dbSNP
rs751219071 1464 dbSNP
rs138193286 1465 dbSNP
rs1425534520 1477 dbSNP
rs1157773176 1478 dbSNP
rs923339781 1478 dbSNP
rs1468434117 1481 dbSNP
rs768249764 1517 dbSNP
rs554387010 1525 dbSNP
rs1397177996 1528 dbSNP
rs1042551524 1530 dbSNP
rs902670034 1555 dbSNP
rs1266144668 1557 dbSNP
rs1224123790 1563 dbSNP
rs1490405031 1568 dbSNP
rs936863161 1570 dbSNP
rs1284895208 1579 dbSNP
rs1324037119 1584 dbSNP
rs1373465202 1594 dbSNP
rs1222385226 1600 dbSNP
rs921404981 1626 dbSNP
rs1280591532 1630 dbSNP
rs1054034992 1635 dbSNP
rs757610232 1641 dbSNP
rs1051227929 1642 dbSNP
rs891376563 1654 dbSNP
rs867362187 1655 dbSNP
rs1296583528 1656 dbSNP
rs1012546213 1657 dbSNP
rs999070748 1665 dbSNP
rs1023073460 1671 dbSNP
rs111919001 1672 dbSNP
rs1230126042 1674 dbSNP
rs1252381479 1715 dbSNP
rs906924092 1723 dbSNP
rs1053010110 1725 dbSNP
rs1158997732 1731 dbSNP
rs893154313 1736 dbSNP
rs1427175055 1759 dbSNP
rs149169007 1761 dbSNP
rs1023034570 1762 dbSNP
rs1261936696 1769 dbSNP
rs1213232493 1770 dbSNP
rs1026047108 1789 dbSNP
rs950548460 1793 dbSNP
rs186461586 1794 dbSNP
rs78067770 1796 dbSNP
rs1002034315 1798 dbSNP
rs964988344 1801 dbSNP
rs6880198 1802 dbSNP
rs923277899 1810 dbSNP
rs1195126946 1832 dbSNP
rs1339955733 1836 dbSNP
rs960580912 1836 dbSNP
rs1474879394 1841 dbSNP
rs1433146309 1842 dbSNP
rs1327286610 1847 dbSNP
rs982699590 1848 dbSNP
rs6880352 1853 dbSNP
rs1178506036 1854 dbSNP
rs978152905 1867 dbSNP
rs924056879 1868 dbSNP
rs1184330406 1875 dbSNP
rs1476173617 1876 dbSNP
rs1242393874 1879 dbSNP
rs6861019 1881 dbSNP
rs1460261709 1882 dbSNP
rs369589040 1889 dbSNP
rs1288479828 1898 dbSNP
rs921004525 1902 dbSNP
rs780607581 1910 dbSNP
rs1296823577 1918 dbSNP
rs932443589 1919 dbSNP
rs1051198983 1928 dbSNP
rs912731547 1933 dbSNP
rs895377685 1938 dbSNP
rs1380328303 1943 dbSNP
rs948319740 1948 dbSNP
rs1338528816 1954 dbSNP
rs77706761 1955 dbSNP
rs1290846967 1956 dbSNP
rs1167682191 1960 dbSNP
rs1336353653 1964 dbSNP
rs1411179484 1970 dbSNP
rs116090320 1977 dbSNP
rs1002535907 1978 dbSNP
rs761093484 1986 dbSNP
rs1206670489 1990 dbSNP
rs146679846 1996 dbSNP
rs1184633794 1998 dbSNP
rs1485272378 2000 dbSNP
rs886195050 2007 dbSNP
rs1419985708 2019 dbSNP
rs1044829682 2033 dbSNP
rs534276638 2035 dbSNP
rs879744573 2039 dbSNP
rs879800784 2040 dbSNP
rs1362272953 2041 dbSNP
rs964629206 2042 dbSNP
rs774605093 2062 dbSNP
rs1034814432 2063 dbSNP
rs190851255 2064 dbSNP
rs1004106435 2066 dbSNP
rs1015498697 2067 dbSNP
rs1030271463 2069 dbSNP
rs1443663728 2090 dbSNP
rs1413436223 2095 dbSNP
rs954686461 2096 dbSNP
rs962973904 2100 dbSNP
rs527516561 2101 dbSNP
rs923983410 2102 dbSNP
rs958128079 2108 dbSNP
rs1305755838 2109 dbSNP
rs748283247 2112 dbSNP
rs916724671 2113 dbSNP
rs948272654 2114 dbSNP
rs912701808 2115 dbSNP
rs934817205 2123 dbSNP
rs1220407258 2125 dbSNP
rs1047085518 2128 dbSNP
rs1292813630 2130 dbSNP
rs1346840890 2133 dbSNP
rs1304671303 2144 dbSNP
rs1225388346 2147 dbSNP
rs377557945 2151 dbSNP
rs1374017445 2153 dbSNP
rs1282063389 2158 dbSNP
rs1208522131 2166 dbSNP
rs1367007988 2168 dbSNP
rs1303383685 2176 dbSNP
rs552315664 2177 dbSNP
rs1453422374 2181 dbSNP
rs1343792002 2184 dbSNP
rs1161821040 2185 dbSNP
rs1413509687 2194 dbSNP
rs914824879 2197 dbSNP
rs766849870 2198 dbSNP
rs772448977 2201 dbSNP
rs947658963 2205 dbSNP
rs1176621662 2213 dbSNP
rs570465736 2242 dbSNP
rs938313964 2246 dbSNP
rs1481479939 2247 dbSNP
rs537896424 2248 dbSNP
rs183197415 2258 dbSNP
rs1421053547 2260 dbSNP
rs1193195338 2270 dbSNP
rs905866529 2280 dbSNP
rs1159504484 2284 dbSNP
rs938726633 2288 dbSNP
rs1317392811 2298 dbSNP
rs886164063 2299 dbSNP
rs1394752525 2317 dbSNP
rs1005939059 2322 dbSNP
rs1221082464 2331 dbSNP
rs1346865049 2339 dbSNP
rs1057253466 2347 dbSNP
rs12657983 2349 dbSNP
rs765259337 2350 dbSNP
rs536187132 2351 dbSNP
rs900314227 2354 dbSNP
rs1004031200 2360 dbSNP
rs1405947793 2367 dbSNP
rs1015882623 2368 dbSNP
rs1297052417 2371 dbSNP
rs898405787 2372 dbSNP
rs1430063805 2387 dbSNP
rs145829606 2392 dbSNP
rs765938667 2392 dbSNP
rs996063480 2397 dbSNP
rs1426935133 2401 dbSNP
rs1264149998 2405 dbSNP
rs1188003777 2415 dbSNP
rs1486074464 2417 dbSNP
rs1027965332 2427 dbSNP
rs1201674284 2429 dbSNP
rs375378902 2432 dbSNP
rs1309499584 2434 dbSNP
rs953726167 2435 dbSNP
rs1263185809 2442 dbSNP
rs1321598650 2442 dbSNP
rs986457856 2442 dbSNP
rs1030629340 2444 dbSNP
rs1231800089 2445 dbSNP
rs1019304339 2447 dbSNP
rs572668638 2450 dbSNP
rs1491026584 2451 dbSNP
rs59229320 2452 dbSNP
rs955826570 2453 dbSNP
rs954613904 2458 dbSNP
rs988985642 2459 dbSNP
rs1167355340 2460 dbSNP
rs1203755078 2462 dbSNP
rs999504657 2464 dbSNP
rs1249646673 2471 dbSNP
rs914732022 2476 dbSNP
rs1171423409 2485 dbSNP
rs1481642676 2485 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' accacguuuucauuaacaCCAAAAa 5'
                            |||||| 
Target 5' --------aaauggggaaGGUUUU- 3'
1 - 16
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000297130.4 | 3UTR | AAAUGGGGAAGGUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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