pre-miRNA Information
pre-miRNA hsa-mir-3152   
Genomic Coordinates chr9: 18573306 - 18573379
Description Homo sapiens miR-3152 stem-loop
Comment Berezikov et al. proposed this sequence as a miRNA candidate based on the RAKE method .
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3152-5p
Sequence 11| AUUGCCUCUGUUCUAACACAAG |32
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1019691326 2 dbSNP
rs1282676806 8 dbSNP
rs762305650 11 dbSNP
rs1364318615 12 dbSNP
rs556364307 18 dbSNP
rs1002755159 19 dbSNP
rs1238555909 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol KIAA1143   
Synonyms -
Description KIAA1143
Transcript NM_020696   
Expression
Putative miRNA Targets on KIAA1143
3'UTR of KIAA1143
(miRNA target sites are highlighted)
>KIAA1143|NM_020696|3'UTR
   1 GTGTAAATATTTTGAATTTAGTCTACTTTGAAAGTATATGGAGTGTTCATTAAAATCACATTTTTTCCTATTATAAAGAT
  81 ACTACAAGTTCTTTATAGAAAGTTTAGGAAATAGAGAAAAAAATTTAATAAACTACATCTATTCATCAATACCCCTCTGA
 161 CTTAAAATGCCAACTCTATAGAAATTAGCTAGTATTAACATTTTGTTATTTCCCTTGTGTGGTTGTATATATATGTAAAT
 241 TATATTTTTAAGCAAAATACATTTTTTGTGTGTAAACAAAATTTTATAAATACAACTGTATTGCAAATGTTCTTTGTCCT
 321 GCTTCTCACTTGACATTGCATTACGAGTATTCTTCCAGGTCAGTAAATTTCAAAAACCTGACATTAATAGCTACAGATAA
 401 TTTCATAAACATCTCATTGTATCTTTTTCATTAGCAATAGCTCCACTTTGGGTGGGGGAGATGATAATGTGCCTTGTTAA
 481 AAATACCTCCCCAACTCCTGCTAAGGGTGGCCATGAGACTCAGCTCTGGCAAGTTAAGAAATACAGGTGGAATTCTGCTT
 561 GATAAAGCTGCTGGGTTTTTTGTTACAAAAGGACAGACTTGGCAAACATGAGCCTTTGCTCTTATCTTTTCATCCTACTT
 641 GGAGTGCAGAGATAAAACCTGAGTACCAGAGCCACTTTTAGGCATAAGGAAGGCAGCCATGTGCTTTGGGTCATGTTAGT
 721 AAAAAGACTCAGAGCTTGGCTCCTTGCTGACATGCCTGGAGGAGCTGCTACACCAGCTTGGATTGCTGACCTCTGACTTC
 801 TTGGTAGTGAGAAGAATAAACACTGTGCTTAATTAGGCCTTGGTCAGGTTTCTTTTATATGCAGCCAAATGCAGTCCTAA
 881 GTAATACAATAAATAACTGGTCAAACTGTTACTGGTGGAGGGTGTCCAGGTTCTTGGCATTTTGGACAAATAATTGAACA
 961 AAACGCACAAAGCAATGAATATCCTCTAGAGGTTTGCCATTGGTTACTTGGCGTACACCCTGTGTAAATGAAGTAGTGGC
1041 CCGTGACCTGTCTGATTGGTGCAGAAAGTGACCAATCAGAGGCTGAAGTGAAGTTACAAAGTTATACTCCTGTGTAAATG
1121 AGGACTTGGCCTATGACCAGTCTGATTGGTTGCAGGAGGGGACCAATCAGAGGCACTTTCATTTTTCATCTGCAATGCAG
1201 AAAAGGCAAGGGGATTGCAAAGGGAGTAGCCTCTGATCCTTTTGTTACTTAGGTATGGAGAGGTGGGGTTTTCCTTTTGA
1281 TTCAGTTCTAGGAAGTCAATGTGAATCAGCCTTAGGTTCCCTGTCTCCAGACCCTATTCTCCTGCCTCATTTTCCCCCTG
1361 AGAGACGTGATCCTCGTAAATCTTTATGGGAGGCTGAGAGACTGAGGGTCTTTCTTCTGTAACTGCTTCATGCTAACTTG
1441 GGACACAGTCCCTACCTATTGGAGATCACGTAACTCTCACCCTGCTTTGTCTAGGGGAGACAGGGTAGCTTCTTGATGGC
1521 CGGTGGTGTCTTCTCCTGAAACTGGCTAGAAATCTTGTCACATGATCATCTAACTTGGTGGTCTCTAGGCAAAAGGAAAT
1601 GGATTTGGTTAAAAGATTTAACAGATATGGTCCAAAAACCAAGGCAAATATAATCATTAATAATGGGCTGGCCAAGGGAG
1681 GGAGCCATGAAACCCAACTTAGTGCCCTTTAGGTGCCCCAGCTGTTGTCATATTTTAGAGGCCCAGTCAGCTAGTTTTCA
1761 GGTGGTGTCCCTTACTAATCCTGATTGGTTGACATCAAAACAGCATTCTTCTTCTAGGAAAATACATAAGCCACCTGTTT
1841 CAGCAGTTAGGAGATCTAGTCCCCTTCGATTTTGCAAAGCGACCACTGCCAAGGAGCCTATCCGAATTTGTAAGGTGACA
1921 ATACTTTGAGCAATGTTATCCAGGCTTTCCATAAAATCCTTGGACAAGCGTTGGTAATAGGATAGGGAAGTTGCAATCCC
2001 GCTAACTCCCATTCCTACCTCTGCTGTTATTCCTAGCCGTTGTGTCTGGTGGTTGCAGTTAAAGGTATAATGAGGGATTG
2081 GTTGTTGGGAGCTATATTAATTTAGGGACATACAATATTTCTGTCTCCAGTCTACCACTTCCACCAAAGACAAATCACAG
2161 CAGAACCGACCTAACTTCAAAATAAACTGCAGTCCCATATACTGGGCCTGATTACCCACACAAAGTGCAACAAGAATCAT
2241 TGTCCATATAGACTCTCCTAGATTGGCTTTGCTAGAACATTTCACAAGGCCATTTCAGTCAAAGTCCTGAGAAAGTAACC
2321 GGTTTCAATTGTGCCCTATTACAAAAGAAAACGTGGTTATTAACTTTATACAGACAAATGCCATGAATTAAGAATATTCA
2401 TAAATAGTTTACAAATTCTGGAGAAATTAGAATACTCAATACACTTAAAGTGTATTTCAAGGCTATAAATAGCTCAAAAT
2481 AAAAAGATTATTCAGACTCTGAAAAAACAAAAAGAAGTAGCAATATTTCAAACAACAAAAGCCATACAAATTATTTCAGT
2561 CTTCCATTAGTTCATTTCAGTCCATGTAATCAACTCCTGCTCTACTTCATATTCATCTTTATGAACACATCAGCCTTTCA
2641 ATTAGTGCCTTGGAAGTTTTCTGTCTAATCCAATGGCACACTCTCCAAAGTTACCAGAAACCTGCATTCAAGAGTTCTTT
2721 TCATGAACTCCAAAGAAGTAAGCCTTGGACTGTAGCTGATTATAAGTCACTTTTTTTTTTTGAGAAGGATCAGAGCAAAA
2801 CATCAATTATGGATGACAAAAGTCTTAAGACAGCCATAAAGACACAGTTGACAAATGTGGCTATTTCTGTGGCTTACAAC
2881 AATTTAACATAATCATTACAACATATATTAAGACATATCAGAATTTTAGAACTCTCATACAATCCTGGAACACATATTAA
2961 CAACAAATCTCTATCAGTATAACCCAAAGGAAGCTAAACACCACCTCACACTTGACAATGTTTCCTGTATAATTCAAACA
3041 TTACAAATAAGCCTAATATAAGCCTAATATGTCACTCTTGAACTTCAGGAAGCCTAATATCCAAAAAGTTAGTTTAAGGT
3121 CAAAAGTTTTTGAATTAACTTTTTTCCATTAGTATGGTCATATCTTTCTTACTAATTTGTAAGTTATGTAATTTATCAAT
3201 TTTTTTTTGTTGTTCTGTTTCCCAACCTCTATGTCAGATAAAGAATCACCCAGGCCAGACACAATGGCTCATGCTTGTAA
3281 TCCCAACACTTTGGGAAGCCAAGGTGGGAGAATTGCTTGAAGCCAGGAATCTGAGCCCAGCCTGGGCGACAAAGCAATAC
3361 CCCTATCTCTACAAAAAATAAAAAATAGCCAGGTGTAGCGACACACACCTGTAGTCCCAGCTGCTCAGGAGGCTAAGCAG
3441 GAGGATGGCTTGGGCCCAGGAGTTCAACGCTGCAGTGAGCTATGATTGCACCACTGCACTCCAGCCTGGGCAACAGAGTA
3521 AGAACTGTCTCAAAAAAAATAAAAAATAGAAATAAATTTTAAAAAAAGAATTACCCATATTCTCTTTGTTTTTGTTTATT
3601 CACATTAACCTTTATTCTATCTGGAATTTATTAGAGTATACTTTTTTCTCAAATAATCAATTGTCCTAGAACCATGTGTT
3681 TCTCATTTATTTGAAAGGCCATCTAGTGAGAGATTTCTCCAAATGTTGGGGTAGGGAAGGGAGGGGAAGCACTTTAAAGT
3761 CTGAGCCTTTAGAGGTGATTCCTCAAGACCCTGCTTAATCCTAACAATTTTCCTCATTAGTAAAAGTCAGCCCAAACTGG
3841 GGGCTTGTTAAGATCCTTACCAGCCACATCCATCTGAAATTATGAATTTCAAAGTATCTTACAAATTTGGTGCCACATTA
3921 TCTTTTTTAAGTTTGTTTTGTTTTGTTTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGAT
4001 CTCAGCTCACTGCAAGCTCCGCCTCCTGGGTTCACACCATTCTCTTGCCTCAGCCTCCCAAGTATCTGGGACTACAGTCG
4081 CCCGCCACCACGCCCGGCTAATTTTTTTGTATTTTTAATAGAGACGGGGTTTCACTTTGTTAGCCAGGATGGTCTCAATC
4161 TCCTGACCTCATGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCAGGAGCCACCGCGCCTGGGCCTTTTT
4241 TTAAGTTTTAAGTACCTATAAAGAACACTGAAAGGTGATGTGTGTGGATGAGCTAGGAAGACCTGAAATAGGCTCTCTCT
4321 AAATTAATCAAATTAATCCTGAAGCCATTCTGCAATACTGTCTTTAATGTATACTCACTTGTTATAGAAGCCAGGGTTTT
4401 TTCCCCTAATTTGTATCATTGCTATATGTGTTATTGTACCAAACTACACTGTTTTAATTGCTGTAAATTTTAATATGTCT
4481 TAGTATCTGGGTGTGGGAATCTTGAAAGCATGGAGTTTGTGTTATTCACCACTGTATTCTCAAATATCAGAAGAGTATCT
4561 GGCCTACTAAGTGCACAATAAACATAGTTAAAATGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaacacaaucUUGUCUCCGUua 5'
                    | ||||||||  
Target 5' gaggggaccaATCAGAGGCAct 3'
1156 - 1177 132.00 -11.70
2
miRNA  3' gaACACAA-----UCUUGUCU---CCGUUa 5'
            | ||||     ||:|||||   ||||| 
Target 5' ttTTTGTTACAAAAGGACAGACTTGGCAAa 3'
577 - 606 124.00 -13.90
3
miRNA  3' gaACACAA---UCUUGUCUCCGUUa 5'
            | || |   | |||  |||||| 
Target 5' gaTATGGTCCAAAAACCAAGGCAAa 3'
1624 - 1648 124.00 -8.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31548586 11 COSMIC
COSN30100747 21 COSMIC
COSN23597352 23 COSMIC
COSN26302958 42 COSMIC
COSN30600840 80 COSMIC
COSN31580377 91 COSMIC
COSN30190684 92 COSMIC
COSN19706197 116 COSMIC
COSN7698913 188 COSMIC
COSN1277373 1375 COSMIC
COSN28532394 3005 COSMIC
COSN16518207 3117 COSMIC
COSN28587921 3206 COSMIC
COSN32063891 3252 COSMIC
COSN6768666 3279 COSMIC
COSN24244744 3689 COSMIC
COSN1950607 4383 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs762865421 1 dbSNP
rs749023809 5 dbSNP
rs1243407905 7 dbSNP
rs1340499184 12 dbSNP
rs1314212596 14 dbSNP
rs773268883 17 dbSNP
rs764910650 19 dbSNP
rs1308398104 23 dbSNP
rs1164546184 25 dbSNP
rs761717205 30 dbSNP
rs1421874215 33 dbSNP
rs57029395 58 dbSNP
rs1459870130 60 dbSNP
rs1339417228 62 dbSNP
rs986486025 67 dbSNP
rs1444676700 68 dbSNP
rs772900993 70 dbSNP
rs955180443 80 dbSNP
rs1377963027 82 dbSNP
rs1240539957 84 dbSNP
rs1309062418 86 dbSNP
rs1165653540 96 dbSNP
rs1223668091 99 dbSNP
rs1319741570 99 dbSNP
rs1266021398 102 dbSNP
rs1456886786 120 dbSNP
rs577718822 124 dbSNP
rs879746467 124 dbSNP
rs921542197 124 dbSNP
rs1180965229 127 dbSNP
rs1310232916 134 dbSNP
rs1407498346 149 dbSNP
rs573295574 152 dbSNP
rs1032773322 177 dbSNP
rs1464097176 178 dbSNP
rs1333466847 179 dbSNP
rs998652941 186 dbSNP
rs188271065 205 dbSNP
rs1024596045 209 dbSNP
rs1376682341 211 dbSNP
rs1014161681 214 dbSNP
rs1313253563 221 dbSNP
rs894407958 228 dbSNP
rs551739344 233 dbSNP
rs146877674 234 dbSNP
rs1463932466 235 dbSNP
rs1208972136 247 dbSNP
rs1367088419 258 dbSNP
rs768739086 261 dbSNP
rs1473942386 272 dbSNP
rs536578633 280 dbSNP
rs1182840038 285 dbSNP
rs1038420440 299 dbSNP
rs1477113924 303 dbSNP
rs1418181670 318 dbSNP
rs940147978 320 dbSNP
rs566383673 321 dbSNP
rs1414034436 334 dbSNP
rs3866724 344 dbSNP
rs1051729750 345 dbSNP
rs1449904331 358 dbSNP
rs934241499 380 dbSNP
rs376540710 382 dbSNP
rs1481614891 390 dbSNP
rs1280083647 404 dbSNP
rs1317930785 410 dbSNP
rs1218138818 417 dbSNP
rs1263597557 423 dbSNP
rs1443811948 437 dbSNP
rs1210442214 438 dbSNP
rs957032911 454 dbSNP
rs1487549696 461 dbSNP
rs1196450243 464 dbSNP
rs539230322 479 dbSNP
rs1424985108 492 dbSNP
rs925651355 505 dbSNP
rs1335204883 509 dbSNP
rs1295384717 522 dbSNP
rs1170924951 529 dbSNP
rs1427467675 547 dbSNP
rs1226750109 568 dbSNP
rs977163996 582 dbSNP
rs554731015 583 dbSNP
rs1397931060 584 dbSNP
rs1024126126 585 dbSNP
rs1326991649 598 dbSNP
rs571859550 608 dbSNP
rs550342323 610 dbSNP
rs1346552890 617 dbSNP
rs1234563933 621 dbSNP
rs531814706 647 dbSNP
rs536667805 658 dbSNP
rs958621985 674 dbSNP
rs1219251609 678 dbSNP
rs1034689741 680 dbSNP
rs1451557219 684 dbSNP
rs561299594 689 dbSNP
rs1248523199 692 dbSNP
rs1478431387 699 dbSNP
rs1178199877 703 dbSNP
rs113239437 704 dbSNP
rs1417591502 710 dbSNP
rs1397086721 727 dbSNP
rs1385467088 730 dbSNP
rs1166671655 732 dbSNP
rs1404662023 735 dbSNP
rs1321580023 751 dbSNP
rs549372298 752 dbSNP
rs1332303615 769 dbSNP
rs1016924563 772 dbSNP
rs1362857574 775 dbSNP
rs1181979139 776 dbSNP
rs1307990553 778 dbSNP
rs1374234819 780 dbSNP
rs1242706843 791 dbSNP
rs183607682 803 dbSNP
rs1265233746 809 dbSNP
rs1208564266 811 dbSNP
rs1292662635 816 dbSNP
rs887214127 828 dbSNP
rs139697217 837 dbSNP
rs1212950255 844 dbSNP
rs1468770778 848 dbSNP
rs900046669 859 dbSNP
rs1039980502 862 dbSNP
rs1472375732 868 dbSNP
rs1161330755 885 dbSNP
rs1461470528 898 dbSNP
rs1330120094 906 dbSNP
rs936274696 908 dbSNP
rs1207067770 910 dbSNP
rs925598972 915 dbSNP
rs977111573 919 dbSNP
rs544936224 923 dbSNP
rs1336143389 924 dbSNP
rs1198628745 929 dbSNP
rs917000255 930 dbSNP
rs1459196299 937 dbSNP
rs1241333703 945 dbSNP
rs1255750926 946 dbSNP
rs1329382882 962 dbSNP
rs992642646 964 dbSNP
rs1442217582 971 dbSNP
rs1370067043 976 dbSNP
rs1475482141 994 dbSNP
rs958789787 996 dbSNP
rs1034226573 998 dbSNP
rs1298330989 999 dbSNP
rs577812125 1012 dbSNP
rs1394604732 1030 dbSNP
rs963292894 1035 dbSNP
rs1356552852 1039 dbSNP
rs1383853715 1040 dbSNP
rs867214582 1042 dbSNP
rs1320017328 1043 dbSNP
rs1004187332 1049 dbSNP
rs879304629 1055 dbSNP
rs1030166452 1059 dbSNP
rs1202449768 1067 dbSNP
rs1259315597 1069 dbSNP
rs562340944 1072 dbSNP
rs866518522 1074 dbSNP
rs1039926392 1075 dbSNP
rs1170565077 1095 dbSNP
rs1376626880 1097 dbSNP
rs1464207649 1102 dbSNP
rs1174039887 1105 dbSNP
rs1376426070 1107 dbSNP
rs936222196 1111 dbSNP
rs1296814834 1120 dbSNP
rs904796463 1123 dbSNP
rs1382798443 1133 dbSNP
rs1300650310 1149 dbSNP
rs1310558018 1166 dbSNP
rs1235691923 1170 dbSNP
rs1285264730 1180 dbSNP
rs1207076631 1187 dbSNP
rs1283740003 1190 dbSNP
rs1486795442 1208 dbSNP
rs543931765 1212 dbSNP
rs1187081528 1231 dbSNP
rs1266054140 1237 dbSNP
rs1342988020 1247 dbSNP
rs1041377405 1253 dbSNP
rs1195045683 1284 dbSNP
rs1395310984 1285 dbSNP
rs945711982 1295 dbSNP
rs1279624279 1299 dbSNP
rs916966783 1325 dbSNP
rs1350754888 1330 dbSNP
rs1454734184 1342 dbSNP
rs992985066 1343 dbSNP
rs937140298 1345 dbSNP
rs927116333 1346 dbSNP
rs1285999256 1354 dbSNP
rs573386616 1360 dbSNP
rs973233190 1360 dbSNP
rs1376469487 1366 dbSNP
rs1238311658 1367 dbSNP
rs963240842 1375 dbSNP
rs1318577778 1376 dbSNP
rs191835720 1381 dbSNP
rs1430515370 1383 dbSNP
rs1264804428 1387 dbSNP
rs907809313 1392 dbSNP
rs1215051749 1396 dbSNP
rs187064573 1401 dbSNP
rs1318593537 1419 dbSNP
rs1438668342 1422 dbSNP
rs951461135 1423 dbSNP
rs1029700884 1426 dbSNP
rs775267334 1427 dbSNP
rs1246965014 1430 dbSNP
rs1420114087 1430 dbSNP
rs1373104375 1439 dbSNP
rs1164611682 1446 dbSNP
rs998666499 1454 dbSNP
rs964187666 1458 dbSNP
rs1018433156 1465 dbSNP
rs1434781572 1469 dbSNP
rs1444838905 1470 dbSNP
rs1000380300 1478 dbSNP
rs1375186873 1482 dbSNP
rs1224130546 1488 dbSNP
rs1396861200 1491 dbSNP
rs1235110177 1497 dbSNP
rs1273234566 1504 dbSNP
rs1456983054 1509 dbSNP
rs1196349139 1515 dbSNP
rs150606207 1521 dbSNP
rs185285444 1522 dbSNP
rs538961127 1523 dbSNP
rs1041995921 1525 dbSNP
rs1412144599 1526 dbSNP
rs1476456861 1530 dbSNP
rs1010527887 1538 dbSNP
rs1422997606 1538 dbSNP
rs1464148041 1546 dbSNP
rs1331055948 1561 dbSNP
rs569254263 1573 dbSNP
rs895464626 1574 dbSNP
rs1056828668 1577 dbSNP
rs1195615791 1579 dbSNP
rs1440842258 1582 dbSNP
rs1353371282 1598 dbSNP
rs571894028 1608 dbSNP
rs1257072175 1615 dbSNP
rs937067839 1619 dbSNP
rs1274617505 1623 dbSNP
rs927063258 1628 dbSNP
rs1209038259 1639 dbSNP
rs1236085881 1647 dbSNP
rs1037467884 1650 dbSNP
rs1189200394 1661 dbSNP
rs1263113221 1665 dbSNP
rs941875337 1678 dbSNP
rs1169742154 1695 dbSNP
rs907756025 1698 dbSNP
rs1486677179 1706 dbSNP
rs1414088780 1711 dbSNP
rs1174302347 1727 dbSNP
rs1373378479 1730 dbSNP
rs1416404112 1733 dbSNP
rs556777261 1738 dbSNP
rs1273145425 1739 dbSNP
rs142885433 1761 dbSNP
rs1271401554 1769 dbSNP
rs745826342 1770 dbSNP
rs954680618 1771 dbSNP
rs922579127 1785 dbSNP
rs1272227253 1796 dbSNP
rs1350415112 1798 dbSNP
rs1212090490 1803 dbSNP
rs1285876599 1805 dbSNP
rs1243068405 1812 dbSNP
rs1487583352 1815 dbSNP
rs1196010519 1816 dbSNP
rs1242775254 1825 dbSNP
rs371836995 1826 dbSNP
rs1477774121 1836 dbSNP
rs1353245164 1843 dbSNP
rs1311871253 1846 dbSNP
rs764978554 1858 dbSNP
rs1397124344 1859 dbSNP
rs1436301352 1861 dbSNP
rs193080597 1863 dbSNP
rs1359707975 1867 dbSNP
rs549163507 1868 dbSNP
rs1000327665 1880 dbSNP
rs968872049 1881 dbSNP
rs367713347 1884 dbSNP
rs1409243829 1900 dbSNP
rs1020485797 1901 dbSNP
rs1010892204 1903 dbSNP
rs566745128 1904 dbSNP
rs1285592459 1910 dbSNP
rs1451041830 1914 dbSNP
rs551704434 1924 dbSNP
rs1454848221 1933 dbSNP
rs1417461844 1939 dbSNP
rs1188871738 1941 dbSNP
rs1379435858 1942 dbSNP
rs1468419018 1951 dbSNP
rs533036610 1960 dbSNP
rs905585674 1970 dbSNP
rs1323288321 1974 dbSNP
rs200944059 1975 dbSNP
rs1441179980 1976 dbSNP
rs1330333180 1981 dbSNP
rs1204443340 1982 dbSNP
rs562378454 1987 dbSNP
rs1334292183 2000 dbSNP
rs1241632275 2001 dbSNP
rs1326508246 2002 dbSNP
rs1356233824 2005 dbSNP
rs1232042357 2006 dbSNP
rs148530013 2011 dbSNP
rs1469008264 2016 dbSNP
rs1198181255 2017 dbSNP
rs188943622 2024 dbSNP
rs1334583391 2030 dbSNP
rs1292333100 2031 dbSNP
rs1364221699 2038 dbSNP
rs907703566 2039 dbSNP
rs1356833320 2041 dbSNP
rs1277197506 2050 dbSNP
rs1440833663 2058 dbSNP
rs1461522309 2068 dbSNP
rs760443615 2081 dbSNP
rs1330774494 2083 dbSNP
rs1329926023 2085 dbSNP
rs1340314408 2089 dbSNP
rs1413457588 2094 dbSNP
rs1459707126 2107 dbSNP
rs933212048 2110 dbSNP
rs923228446 2112 dbSNP
rs977125584 2114 dbSNP
rs561830490 2115 dbSNP
rs1196647026 2119 dbSNP
rs1393393406 2122 dbSNP
rs1485256999 2124 dbSNP
rs942682023 2129 dbSNP
rs1476270366 2140 dbSNP
rs539941653 2146 dbSNP
rs1406052506 2153 dbSNP
rs911266202 2166 dbSNP
rs1370883390 2167 dbSNP
rs978833755 2168 dbSNP
rs1168195682 2178 dbSNP
rs571797461 2196 dbSNP
rs1401868504 2201 dbSNP
rs184048019 2208 dbSNP
rs193012740 2215 dbSNP
rs1356679660 2217 dbSNP
rs1470538575 2225 dbSNP
rs1399978643 2242 dbSNP
rs374445805 2246 dbSNP
rs578253492 2247 dbSNP
rs989011951 2248 dbSNP
rs1468339537 2251 dbSNP
rs1346801003 2263 dbSNP
rs960539495 2273 dbSNP
rs1213936627 2278 dbSNP
rs1282319604 2291 dbSNP
rs1485940053 2296 dbSNP
rs1185926364 2314 dbSNP
rs1336581900 2320 dbSNP
rs1035952912 2321 dbSNP
rs1001116114 2326 dbSNP
rs905531912 2328 dbSNP
rs1452904546 2329 dbSNP
rs1015914831 2333 dbSNP
rs1222757990 2335 dbSNP
rs1005911797 2340 dbSNP
rs1373376593 2340 dbSNP
rs1419626585 2352 dbSNP
rs886209865 2353 dbSNP
rs1387162895 2370 dbSNP
rs1382853714 2373 dbSNP
rs1300803790 2386 dbSNP
rs1047993902 2389 dbSNP
rs1438548246 2405 dbSNP
rs1305352705 2423 dbSNP
rs1348395878 2426 dbSNP
rs1369980678 2427 dbSNP
rs1326405135 2438 dbSNP
rs1462804216 2439 dbSNP
rs1205225643 2441 dbSNP
rs1251884391 2444 dbSNP
rs1343700498 2450 dbSNP
rs1195188220 2463 dbSNP
rs1158622820 2467 dbSNP
rs1401395301 2473 dbSNP
rs1418878553 2490 dbSNP
rs1410194215 2497 dbSNP
rs1157477980 2501 dbSNP
rs1192325403 2502 dbSNP
rs1454171001 2508 dbSNP
rs1366090684 2522 dbSNP
rs1454333175 2523 dbSNP
rs1292994386 2539 dbSNP
rs933178078 2560 dbSNP
rs1326841733 2562 dbSNP
rs556865495 2575 dbSNP
rs1195958420 2593 dbSNP
rs1223029939 2599 dbSNP
rs1485084554 2622 dbSNP
rs1318627705 2636 dbSNP
rs901720362 2649 dbSNP
rs1271987730 2662 dbSNP
rs1466800088 2665 dbSNP
rs1215116510 2681 dbSNP
rs1253247899 2689 dbSNP
rs1240033817 2691 dbSNP
rs1175874175 2704 dbSNP
rs1253166873 2705 dbSNP
rs1420173121 2711 dbSNP
rs1164900388 2723 dbSNP
rs1415694773 2724 dbSNP
rs1463082496 2741 dbSNP
rs538446690 2750 dbSNP
rs1214570788 2773 dbSNP
rs1038948925 2782 dbSNP
rs1296203867 2782 dbSNP
rs879928033 2782 dbSNP
rs1317000082 2784 dbSNP
rs1375339218 2788 dbSNP
rs1287454936 2789 dbSNP
rs1391888542 2792 dbSNP
rs6780236 2793 dbSNP
rs1347130290 2798 dbSNP
rs1304035096 2801 dbSNP
rs911212539 2805 dbSNP
rs978782661 2806 dbSNP
rs947428622 2808 dbSNP
rs913329633 2811 dbSNP
rs368289319 2817 dbSNP
rs555872541 2819 dbSNP
rs989350438 2837 dbSNP
rs1481172098 2840 dbSNP
rs1187771829 2841 dbSNP
rs1256059292 2846 dbSNP
rs1476198296 2904 dbSNP
rs1188716726 2912 dbSNP
rs1418941087 2913 dbSNP
rs1408420294 2915 dbSNP
rs1347047220 2916 dbSNP
rs960236510 2918 dbSNP
rs1312159898 2937 dbSNP
rs1036306534 2941 dbSNP
rs1416597974 2971 dbSNP
rs980312708 2975 dbSNP
rs1360747031 2984 dbSNP
rs367935915 2998 dbSNP
rs1274681941 2999 dbSNP
rs374371674 3005 dbSNP
rs1308405315 3011 dbSNP
rs1434170770 3018 dbSNP
rs970310042 3020 dbSNP
rs1396263202 3026 dbSNP
rs1176043883 3029 dbSNP
rs1427131254 3056 dbSNP
rs1474477577 3058 dbSNP
rs1188441111 3070 dbSNP
rs1419182373 3083 dbSNP
rs1185575212 3096 dbSNP
rs1449800465 3101 dbSNP
rs1486027290 3115 dbSNP
rs1264860075 3116 dbSNP
rs370412563 3117 dbSNP
rs1015861718 3125 dbSNP
rs1485038278 3127 dbSNP
rs1428073965 3133 dbSNP
rs1280998071 3135 dbSNP
rs1271522140 3140 dbSNP
rs1441998159 3156 dbSNP
rs1235265404 3157 dbSNP
rs1005857795 3164 dbSNP
rs1233158651 3171 dbSNP
rs1294504631 3171 dbSNP
rs886156928 3171 dbSNP
rs1350572529 3179 dbSNP
rs1026067476 3189 dbSNP
rs997715833 3194 dbSNP
rs1214938266 3198 dbSNP
rs73829680 3206 dbSNP
rs901669323 3209 dbSNP
rs1311267140 3212 dbSNP
rs1192062410 3214 dbSNP
rs1414288635 3215 dbSNP
rs1376094060 3217 dbSNP
rs1393025178 3218 dbSNP
rs1038915757 3219 dbSNP
rs868022482 3223 dbSNP
rs1460857157 3224 dbSNP
rs6803405 3226 dbSNP
rs903791388 3231 dbSNP
rs1388812206 3232 dbSNP
rs1430638187 3253 dbSNP
rs1043048802 3254 dbSNP
rs1425373992 3257 dbSNP
rs1185290238 3263 dbSNP
rs1373565273 3275 dbSNP
rs372844577 3279 dbSNP
rs3205460 3280 dbSNP
rs947377716 3282 dbSNP
rs1257540447 3297 dbSNP
rs913267055 3306 dbSNP
rs1268845981 3307 dbSNP
rs1479657133 3313 dbSNP
rs1211996757 3318 dbSNP
rs1250679322 3321 dbSNP
rs373867335 3323 dbSNP
rs1199276556 3327 dbSNP
rs1232126510 3332 dbSNP
rs1468528375 3335 dbSNP
rs938798046 3336 dbSNP
rs1319700085 3341 dbSNP
rs551470097 3347 dbSNP
rs970257532 3348 dbSNP
rs1291699678 3363 dbSNP
rs1328567196 3364 dbSNP
rs1334427121 3365 dbSNP
rs909478675 3379 dbSNP
rs1289540486 3381 dbSNP
rs984383260 3386 dbSNP
rs1232839643 3387 dbSNP
rs528639275 3390 dbSNP
rs1026434322 3399 dbSNP
rs1357280615 3400 dbSNP
rs1195509374 3404 dbSNP
rs1272003264 3409 dbSNP
rs1435878396 3409 dbSNP
rs1184167437 3410 dbSNP
rs533123546 3410 dbSNP
rs1252495995 3414 dbSNP
rs997264149 3424 dbSNP
rs1141633 3427 dbSNP
rs1389725861 3429 dbSNP
rs761502652 3430 dbSNP
rs34296624 3434 dbSNP
rs3205463 3435 dbSNP
rs568835810 3443 dbSNP
rs1394715234 3449 dbSNP
rs34787237 3450 dbSNP
rs1412005313 3458 dbSNP
rs1309114765 3460 dbSNP
rs138064610 3461 dbSNP
rs1007412268 3468 dbSNP
rs903737528 3469 dbSNP
rs574479060 3473 dbSNP
rs1162372614 3477 dbSNP
rs1460536074 3478 dbSNP
rs1418121809 3482 dbSNP
rs377016950 3490 dbSNP
rs373344137 3493 dbSNP
rs1275153501 3498 dbSNP
rs1485288756 3499 dbSNP
rs529092513 3501 dbSNP
rs548642942 3515 dbSNP
rs1458935985 3521 dbSNP
rs1191944771 3527 dbSNP
rs1371004846 3532 dbSNP
rs891784874 3540 dbSNP
rs1212831304 3542 dbSNP
rs1169588177 3544 dbSNP
rs1335799234 3560 dbSNP
rs1433382116 3561 dbSNP
rs1053556007 3569 dbSNP
rs1402915824 3571 dbSNP
rs1267429308 3574 dbSNP
rs1381750267 3575 dbSNP
rs1237021248 3582 dbSNP
rs71325038 3587 dbSNP
rs1316436934 3598 dbSNP
rs1328406261 3600 dbSNP
rs1335201127 3603 dbSNP
rs1308362490 3605 dbSNP
rs1298061478 3619 dbSNP
rs1346956320 3620 dbSNP
rs540350820 3630 dbSNP
rs868598178 3632 dbSNP
rs6792299 3633 dbSNP
rs1369252402 3635 dbSNP
rs1204013061 3637 dbSNP
rs1259102988 3645 dbSNP
rs1465972652 3648 dbSNP
rs1325733920 3657 dbSNP
rs142853212 3660 dbSNP
rs948894765 3672 dbSNP
rs1452964362 3676 dbSNP
rs1164609723 3679 dbSNP
rs909426237 3686 dbSNP
rs1362663078 3689 dbSNP
rs985002527 3700 dbSNP
rs951063867 3703 dbSNP
rs918912942 3704 dbSNP
rs1357196751 3705 dbSNP
rs976172250 3709 dbSNP
rs747739749 3726 dbSNP
rs1369887844 3731 dbSNP
rs1438483243 3739 dbSNP
rs1303198226 3740 dbSNP
rs965795523 3741 dbSNP
rs1238325393 3746 dbSNP
rs1017373597 3755 dbSNP
rs1007360215 3756 dbSNP
rs545833901 3766 dbSNP
rs1252021090 3767 dbSNP
rs1192825912 3769 dbSNP
rs1022171429 3771 dbSNP
rs377045267 3775 dbSNP
rs538950658 3783 dbSNP
rs1031645464 3786 dbSNP
rs1157635749 3790 dbSNP
rs1414202290 3805 dbSNP
rs1203561804 3806 dbSNP
rs1164431614 3807 dbSNP
rs1003295155 3810 dbSNP
rs374260936 3816 dbSNP
rs867662541 3843 dbSNP
rs1261322255 3855 dbSNP
rs1202107654 3859 dbSNP
rs1368109778 3865 dbSNP
rs1390691340 3872 dbSNP
rs907260156 3873 dbSNP
rs1346418479 3875 dbSNP
rs556907947 3877 dbSNP
rs1044459173 3883 dbSNP
rs1303286050 3887 dbSNP
rs1228493467 3899 dbSNP
rs866953548 3917 dbSNP
rs1332181830 3920 dbSNP
rs1442153613 3924 dbSNP
rs1223405593 3935 dbSNP
rs186696201 3939 dbSNP
rs1480518915 3945 dbSNP
rs1175925520 3950 dbSNP
rs1325143311 3950 dbSNP
rs1380102729 3953 dbSNP
rs1141637 3954 dbSNP
rs1187270358 3959 dbSNP
rs1415856032 3965 dbSNP
rs1383786556 3966 dbSNP
rs1298338149 3973 dbSNP
rs1165766029 3974 dbSNP
rs1350181998 3980 dbSNP
rs1461319302 3981 dbSNP
rs1306052719 3986 dbSNP
rs948842235 3987 dbSNP
rs887934225 3988 dbSNP
rs1420961064 3991 dbSNP
rs574333818 3995 dbSNP
rs866248323 3996 dbSNP
rs1172889829 3997 dbSNP
rs1478244042 3998 dbSNP
rs555662499 4006 dbSNP
rs1379092023 4008 dbSNP
rs1049720160 4011 dbSNP
rs929550876 4017 dbSNP
rs919516576 4027 dbSNP
rs975739854 4040 dbSNP
rs1262683025 4046 dbSNP
rs1473820386 4052 dbSNP
rs1218956340 4054 dbSNP
rs1182622866 4060 dbSNP
rs1419097939 4065 dbSNP
rs1427008338 4076 dbSNP
rs944374299 4080 dbSNP
rs1166453608 4081 dbSNP
rs1391861059 4083 dbSNP
rs534336423 4084 dbSNP
rs1235596923 4088 dbSNP
rs573272132 4092 dbSNP
rs182081658 4093 dbSNP
rs1449625821 4095 dbSNP
rs1227136402 4096 dbSNP
rs539456381 4102 dbSNP
rs1225806032 4104 dbSNP
rs1300251346 4121 dbSNP
rs369190403 4125 dbSNP
rs1278401049 4126 dbSNP
rs544947196 4136 dbSNP
rs11546549 4142 dbSNP
rs1373041886 4145 dbSNP
rs1241634187 4151 dbSNP
rs187886874 4152 dbSNP
rs190179702 4155 dbSNP
rs541236716 4158 dbSNP
rs1449856990 4159 dbSNP
rs573683142 4160 dbSNP
rs376722253 4161 dbSNP
rs1166002650 4162 dbSNP
rs1172893497 4168 dbSNP
rs1474949246 4179 dbSNP
rs1176121079 4188 dbSNP
rs11546548 4197 dbSNP
rs956619441 4205 dbSNP
rs1424657100 4209 dbSNP
rs1196067587 4216 dbSNP
rs1035353612 4224 dbSNP
rs1422156237 4225 dbSNP
rs1256826568 4226 dbSNP
rs1211680346 4227 dbSNP
rs1220381625 4230 dbSNP
rs112289209 4231 dbSNP
rs907207778 4237 dbSNP
rs1271473887 4245 dbSNP
rs1195626260 4253 dbSNP
rs1465145480 4254 dbSNP
rs1022953013 4261 dbSNP
rs757407344 4267 dbSNP
rs1278465414 4297 dbSNP
rs1191713638 4304 dbSNP
rs1159856359 4315 dbSNP
rs1455213931 4317 dbSNP
rs370493969 4324 dbSNP
rs887881637 4325 dbSNP
rs1460632610 4340 dbSNP
rs1049201368 4345 dbSNP
rs1333251512 4356 dbSNP
rs929472739 4358 dbSNP
rs1279493806 4366 dbSNP
rs1348666025 4376 dbSNP
rs1230335344 4380 dbSNP
rs3762 4385 dbSNP
rs112888446 4394 dbSNP
rs1041023883 4402 dbSNP
rs1287394948 4412 dbSNP
rs1292212564 4416 dbSNP
rs944974492 4419 dbSNP
rs1342248429 4424 dbSNP
rs1232253120 4428 dbSNP
rs1471597330 4453 dbSNP
rs1326736773 4470 dbSNP
rs1183673239 4474 dbSNP
rs1422027788 4477 dbSNP
rs564027899 4499 dbSNP
rs985815538 4509 dbSNP
rs946423521 4510 dbSNP
rs1460012230 4511 dbSNP
rs1406350068 4515 dbSNP
rs1328718291 4527 dbSNP
rs1058705 4531 dbSNP
rs1417397552 4532 dbSNP
rs1182566274 4553 dbSNP
rs1412273864 4557 dbSNP
rs555115844 4570 dbSNP
rs1231704060 4578 dbSNP
rs1242793275 4584 dbSNP
rs183571690 4586 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_020696 | 3UTR | AAAACCAAGGCAAAUAUAAUCAUUAAUAAUGGGCUGGCCAAGGGAGGGAGCCAUGAAACCCAACUUAGUGCCCUUUAGGUGCCCCAGCUGUUGUCAUAUUUUAGAGGCCCAGUCAGCUAGUUUUCAGGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_020696 | 3UTR | AAUAUAAUCAUUAAUAAUGGGCUGGCCAAGGGAGGGAGCCAUGAAACCCAACUUAGUGCCCUUUAGGUGCCCCAGCUGUUGUCAUAUUUUAGAGGCCCAGUCAGCUAGUUUUCAGGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_020696 | 3UTR | CAAAAACCAAGGCAAAUAUAAUCAUUAAUAAUGGGCUGGCCAAGGGAGGGAGCCAUGAAACCCAACUUAGUGCCCUUUAGGUGCCCCAGCUGUUGUCAUAUUUUAGAGGCCCAGUCAGCUAGUUUUCAGGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000296121.4 | 3UTR | CAAAAGGAAAUGGAUUUGGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
75 hsa-miR-3152-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092535 KBTBD8 kelch repeat and BTB domain containing 8 2 6
MIRT461731 NDUFA2 NADH:ubiquinone oxidoreductase subunit A2 2 2
MIRT468456 SET SET nuclear proto-oncogene 2 2
MIRT482192 AHR aryl hydrocarbon receptor 2 2
MIRT507923 BZW1 basic leucine zipper and W2 domains 1 2 4
MIRT512208 C18orf25 chromosome 18 open reading frame 25 2 6
MIRT526238 STARD4 StAR related lipid transfer domain containing 4 2 2
MIRT536131 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT536280 LIMA1 LIM domain and actin binding 1 2 2
MIRT544251 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT548054 GOLGA7 golgin A7 2 2
MIRT563443 ISCA1 iron-sulfur cluster assembly 1 2 2
MIRT565643 SIX4 SIX homeobox 4 2 2
MIRT614870 PDE12 phosphodiesterase 12 2 2
MIRT614923 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT615793 FAM124A family with sequence similarity 124 member A 2 2
MIRT618557 VLDLR very low density lipoprotein receptor 2 2
MIRT622147 SORBS2 sorbin and SH3 domain containing 2 2 2
MIRT622390 RSBN1 round spermatid basic protein 1 2 2
MIRT624185 DDX19B DEAD-box helicase 19B 2 2
MIRT624448 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT625340 TAPBP TAP binding protein 2 2
MIRT625370 IRGQ immunity related GTPase Q 2 2
MIRT627276 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT627746 RAD54L2 RAD54 like 2 2 2
MIRT629578 RFC2 replication factor C subunit 2 2 4
MIRT630537 LGALS8 galectin 8 2 4
MIRT630559 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT630568 SOWAHA sosondowah ankyrin repeat domain family member A 2 4
MIRT630763 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT635424 LRP10 LDL receptor related protein 10 2 2
MIRT636011 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 2 2
MIRT636337 PHAX phosphorylated adaptor for RNA export 2 2
MIRT638413 POU3F2 POU class 3 homeobox 2 2 2
MIRT639358 INIP INTS3 and NABP interacting protein 2 2
MIRT642124 DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A 2 4
MIRT642828 KIAA0319 KIAA0319 2 2
MIRT644017 NUCB1 nucleobindin 1 2 2
MIRT644038 WWC2 WW and C2 domain containing 2 2 2
MIRT644153 GIN1 gypsy retrotransposon integrase 1 2 2
MIRT644649 SNX9 sorting nexin 9 2 2
MIRT645798 OMA1 OMA1 zinc metallopeptidase 2 2
MIRT647633 FAIM2 Fas apoptotic inhibitory molecule 2 2 2
MIRT648528 KIAA1143 KIAA1143 2 2
MIRT648851 PDLIM3 PDZ and LIM domain 3 2 2
MIRT648880 TUBGCP5 tubulin gamma complex associated protein 5 2 2
MIRT650777 TNFRSF10A TNF receptor superfamily member 10a 2 2
MIRT654200 RNF19B ring finger protein 19B 2 2
MIRT654508 RAB5B RAB5B, member RAS oncogene family 2 2
MIRT655249 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT656089 MTA3 metastasis associated 1 family member 3 2 2
MIRT656599 LRRC55 leucine rich repeat containing 55 2 2
MIRT659194 CYBB cytochrome b-245 beta chain 2 2
MIRT660000 C1orf115 chromosome 1 open reading frame 115 2 4
MIRT661715 KLF8 Kruppel like factor 8 2 2
MIRT661813 PRPSAP1 phosphoribosyl pyrophosphate synthetase associated protein 1 2 2
MIRT668360 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT679734 CABP4 calcium binding protein 4 2 2
MIRT708616 NUDT18 nudix hydrolase 18 2 2
MIRT709034 TROVE2 TROVE domain family member 2 2 2
MIRT709573 DMGDH dimethylglycine dehydrogenase 2 2
MIRT709665 AJAP1 adherens junctions associated protein 1 2 2
MIRT709874 TRAF1 TNF receptor associated factor 1 2 2
MIRT710821 NLRP12 NLR family pyrin domain containing 12 2 2
MIRT710883 PARL presenilin associated rhomboid like 2 2
MIRT711547 LCAT lecithin-cholesterol acyltransferase 2 2
MIRT712017 STX1B syntaxin 1B 2 2
MIRT713058 BLVRA biliverdin reductase A 2 2
MIRT713129 THRB thyroid hormone receptor beta 2 2
MIRT713878 MOB3A MOB kinase activator 3A 2 2
MIRT714154 NXPH3 neurexophilin 3 2 2
MIRT719755 FLYWCH1 FLYWCH-type zinc finger 1 2 2
MIRT720213 KCNK1 potassium two pore domain channel subfamily K member 1 2 2
MIRT722728 BRMS1 breast cancer metastasis suppressor 1 2 2
MIRT725652 ABI2 abl interactor 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3152-5p Palbociclib 5330286 NSC758247 approved resistant cell line (T47D)
hsa-miR-3152-5p Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)

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