miRTarBase - #MIRT648596


—
pre-miRNA Information
pre-miRNA hsa-mir-4640   
Genomic Coordinates chr6: 30890883 - 30890972
Description Homo sapiens miR-4640 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4640-5p
Sequence 9| UGGGCCAGGGAGCAGCUGGUGGG |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1392105945 7 dbSNP
rs939712790 9 dbSNP
rs762825841 15 dbSNP
rs71552023 20 dbSNP
rs1305909531 21 dbSNP
rs750017220 21 dbSNP
rs1375436057 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
B32FZJ miR-4640 Safety Biomarker (SAF) Clinical/Experimental Data Expression lower Urine Quantitative polymerase chain reaction
Gene Information
Gene Symbol ZYG11B   
Synonyms ZYG11
Description zyg-11 family member B, cell cycle regulator
Transcript NM_024646   
Expression
Putative miRNA Targets on ZYG11B
3'UTR of ZYG11B
(miRNA target sites are highlighted)		 
>ZYG11B|NM_024646|3'UTR
   1 TAGCCATAAGTATTGGATAGTTGAATCACAGGAATCCTTTTTGTGATTGGTCCATTTGGAATATCTTACCCTCCCTGATG
  81 TTTTGGGGGTTTCTATGACAAGAGTCATAAAATCAGTTTGGGATTGATAATGTGTAGTACTGCCCATGTGAACAGTCTCT
 161 AATTTGTCTTGTGATTTTAAACTTATGAGTCAAGAAGGGTCTCTTCCTTTATCATTGCCTTTTAGGAAATTTTCCACATC
 241 TTTCAGTGTTTGAACTTACTTGTGCTTGAGATTCTACAGTTTTATGGTAAAGTTTGCACGAACCCTTAGGCCAGACTTTT
 321 CTGATCTCAGAGTCCCTTCCAATCAATTTGCAGCTTCACATAAGCTGTTGACCTGATTTCTGACACTGCTTCAGTTGTAA
 401 ATTTTATACTGCTTCTGTATAAAATGCCTTTCTTCTCTATCTGTGTATATTTTATAAGATGTCCTTCTTAGTGTGAAAGA
 481 AGGGAAATGTGGATCATCTTGTGGAAGCTAATCACTGGCAGGAGCCTGGATGGCTGGCGGAAAGATATATGAGAAAGAAA
 561 AATTATGAAGGTAGAACAGAGTGTAGGAACTGGGAATTGGTTTCATGGTATAGGTTTTAAAATGAGACAGGCTACCCTTC
 641 GGGAGTCCACCTCTCTTGAGGCGGTGAGCAGAAGCTTGTCCTCCATATTTATACCTAGAAGTGTGGACTGCTGGTTCCTG
 721 CACAGACTGCCGGTTATTCACTAGGAATATTTCCCCAAGCACCACAGTATAAAATACTACAGCACTCTGTGTTAAAGACT
 801 AACTGTCTACATCTCCATATGTTGTAGTGTTGTGAAAATGTGATTTTAAAAAATTATCGCCAGTTAAAACTGGCTATTCT
 881 TTTCCTCTATTTCAAAGTCATTTTTGTTCAGTGGAATAGAGACAGCAACATGGTGTTAACCTCTCAATTAAAATACAATT
 961 GACACCAGTAAATTTTGCCATAAAAAGTTAAAATCTCTTGTTCAAAATATGTGTATCTTCTTAATGTGTTCATGTTAGAG
1041 AAAGTGTCCCCATCTCACTGCCAAAAATGAAAGAAAATAATTAAACTCTTTAAATGATTAAATGTAATGATTCTACTCGC
1121 AGTGCATAACAGCACATATTTTTGACAGATTATTTTTTAGGCAATTACCTTTCCTTAAGGTATCTGATACAGTATAGTAA
1201 AGAATCACTTATATCAGTAATAGCACTTGAGAGATAGCAAGTCACCAAGAAACTTAATTTTCATTTAAAATTTTATTTTG
1281 TGAATAAGGTCAATCTACAATCCCAGATAACTACATTTTTTTTCATAGATGGCCAGTGTTTTCAACAGAGATTTAAAATG
1361 GAATATTAAAATTATAGTGATTATTCAGAAGCATTTTAATTTAGAAAGGAGCTGGTTTGTTAGTTCACTGATGACATTTT
1441 TTGACAAACATTTTATACCATTATCACAATAATCAGACTTGAATTTTTTTTGGAGTTCCTTCATGTGAATGAAAACTGAG
1521 TTAAAAGAAAGTAGGCATTTAGGTCTGGATGCAGTGGCTCATGCTTGTAATCCCAGCACTTTGGGAAGCTGAAGCAGGAG
1601 GATTGCTTGAGCCCAGAAGTTCAAGACTAGCCTGGGCAACATAGTGAGACTCGGTCTCTACCAAAAAAAAAAATTTTTTT
1681 TTTTTAAATTAGCTGGGTGTGGTGGCACCTGGGAAACAGAGCGAGACGCTGACTCAAATAAATATCTAAATAGATATTTA
1761 GAATCACTGAAAACCATATTAAATGCTGGGTTAATGCTGACTTAATTGGCTTAAGGAATTTTTATAGGCGTAAGATAAAT
1841 TTTCACAGACTAAGTTTATTTCAGACAAAATAGAGAATTCTTTTAAAAGTTTTTTTTTTTTTTTTCCTTTTTCGAATGTT
1921 AATGTCTAAGACAAAGTTCAGAAAACGAGATGGCCTGTGGTAGTTTGGAAATTGCTAGATATGTTGACCGTTTCCAGGTC
2001 TTTTATCTAGTGTAGTTAAGGGAAAGCCTATTTAAGAAGTTTGGCTTCAAGTTTCTGTTTTATAAGACAAAAGTGCATAT
2081 TTCTTTACAGGCTAATGCTAGGTTTTTGTCTTTACAAATTATTTTCAGAAATGGCTAAAAGTGTACAGAAAACAGTAAAT
2161 CCCTTCTTTACTCAGAATAACTTCTTAATAGTTGAAGCATCCAAAATATGTAAAAGCAAGGGTGGGCGTAGTGGCTCTTG
2241 CCTGTAATCCCAGCATTCTGGGAGGCCGAGGCGGGCAGATCACTTGAGATCAGGAGTTCGAGACCACCCTGGCCAACGTG
2321 GTGAAACCCCGTCTCTACTAAAAATACAAAAACTAGCTGGGCATGGTGGCTTTTTTGCACGCCTATAGTCCCAGCTACTC
2401 GGGAGGCTGAGGCACGAGAATCACTTGAACCCAGGAAGTGGAGGTTGCAGTGAGCTAAGATCGTGCCACTGCACTCCAGC
2481 CTGGACAACGGAGTGAGACTCTGGGGAAAAAAAAAATTAAACTTCCTACTTTTTTTCTTTTTGTAGAGACAGAGTTTCAC
2561 TCTGTCGCCCAAGCTGGAGTGCAGTGGCACAATCATACCTCACTGCAGCCTCTTGGGCTTATGTGATCTTACCCCCTCAG
2641 CCTCTGGAGTAGCTGGAACTACAGGCTAAATTTCCTACTTTGTAAACATCAGTAGTGGCCAGATACTTCTGAGTCTTAAA
2721 AGCATAATAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACAAGGTCA
2801 GGAGTTCAAGACCAGCCTGGCCCAAATGGTGAAACCCTGTCTCTACTAAATATACAAAAATTAGCTGGGTGTGGTGGCGG
2881 GCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGTGGTGAGCCAA
2961 TATCATGCCACTGCACTCCAGCCTGGGTGACAGAGTAAGACTCCGTCTCAAAAAAAAAAAAAGCATAATAATTTATTACA
3041 TCCCAAATATATAAAAATTTGAGTGCCTTTGCAGTTGGGATGGTTCCTAAAATTGCGTATAGAATTAAGGCACAGAATTG
3121 TGTGTAAGGTCCTGAATCTGGCTAAAATACAGTGGATGTATGTATTGGAATTATGAGGCATAAGTAGCCAGTATCTATAG
3201 TTAGAATCTACAAGGCCTCCTTTTTGCACCTGTAGACTAGAATATAACTGTTATTGGTGCCTTTGAGTGTTATCTCTCAG
3281 TGGCTAGAGGTGCTGTTTCAAGCACAATTTAGACTAGGGTTGAACCACTCATTGTTCAAATCATTGGTGGGCTCCAATGT
3361 AAAATATCACTACATCAGTCCACAAGCAACATTAAGGAAATCTAAAGGAAATGGAATTTGACTTTTTAGAGTATAATGAT
3441 GTTCTAGGGCATAATGAGGAAAATTTTTAAAAAATAGATTATAATGATACATATTGGTATCATTAAGACAACAGATTTGA
3521 GCAAATACAATTAAGGTGTCTTATTTTTTGCATCAAGTAATTATTGCTGTGGTCTTTCTACTCCACAAAATAATTTTTTC
3601 TTTTTGCAGTTGAAAATTAACTGCATTATTAACTAATTAATAAAATAAATCAAGTGGTATAAGGGATTAGTTTACCCTCA
3681 AGCCGATGACTCCATGGCTACTGATATTAGTTAGTTTAGGATTTTTAAAAAGCATATCAGACCCCCAGTTTCAGGAATTG
3761 AGTATAAATATTGCTTCTTGTCACCCTGGGACAGTAATGCCTTATAGTGGCACTAGTCACCTTAAGTAGATTACACATGG
3841 TTGAGGTGAATAAAGCTGCATGGGAATTTGCTTTCGTGATATATTTCATTTGCAAACTTCTACATAATCAAGTTTTATGT
3921 TTAAAACCATCGGTTCTATATATCTAGCTTTAGGAAGTTGCCCTTACAGGTGGGACCTTTTGTGTTAATCTGTTTTCTCC
4001 CCAGTCATCTTATTTGGCTATGTTAAAAAAAAAAAAAAAAAAAAAGCGAGAGAGAGAGATGGTGTCTCACTGTGTTGCCC
4081 AGGCTGGTCTCGAACTCCTGGCCTCAAGTGACTTTCCCACCTCAGCTTCCCAAAGTGCTGGAATCACAGGCATGAGCCAC
4161 AGTGCCTGGTCTTAGCTGTGTTTTTAATTATGCCATGCATCAACATAACACCGGGCCATCTTCCTATCCCTTCCTATCCC
4241 ATATGTTTAATGAAAACATATTTTATGTGCTAAATTAGGTTAATTTACCAGAGATTTAGCTTAGTGTTTTTAAACTATAG
4321 AACAATACCCCTATAGAACAATGTACAGCTGCACCCAAGGTTAAAAAGAGGTAGCAGGGAAAACAAACTTAAACTCTTTG
4401 TATATGGTGAAACCCATCCCTCTCCTGCCCTCTAATGGTATGTTTACATTATTTCGTTATTATACAATGTAGTGGTATAA
4481 ACAGTATTATTAAACTGAAGGCATAAGTTAAAGGAAGTATGTTACTTTGAGCTGATGTAGGCTCTTCCACTTTTATCTGT
4561 ATTTTACTTATTTGGGGACTTTGTATTGCTAGGGCTTCAGAATACTAACTTTGACACAGCTCCCAGAGAGGTTTGCAAAC
4641 TTTTGGTTTCCCTCTCAAATCCATGGTAGTAGTTTCAAATGAGTTTGTGGATAATGGATGTTTAGTCCTTATCATTTGCT
4721 GTGTTTTGACAGTTTTTAATTTGCAGTATTCACTCACGAACTGTTTTATTTTAGGAATAATGCAAAACCAACCTTCGTCC
4801 GGTGATGAGAATAGCCGTATGATAAGAGAATTTGCTCATCGTGCTTTAAATGATTAACTGTTTTACCTTATTTAGTATTT
4881 CATAGACTTTGCATGATATGGTACACTCCTAATTATGCATTCTTTGGTTTCCAAATCTTAATCTAAGATACTTTGTTAAC
4961 TGACTGGTAGCCTAAGAAAGAGACTTTTCTTCCTGTTTTTCTCTCTCCCCATTTTTTGGGGTAAGTTTTGCAAAGATCAG
5041 TGCTGCTTCTCATGACTCTAAAGTAAAGCTCTTTTGGATAGCACAGCCTAACTTTACAGCTAGACAGAATGGCCATTAAG
5121 AATATTTCCAAAATCCAAGTTTATCAAAATTATTTTGTGGGAAATCATCAATCTATTTTATTAATGTTATGTGTTTAATT
5201 TTGGACTTATTTTGGGAAAAACTGTTCAAATTGGGTCCTTTTAAGCTTATTTTAAGCAGCCTAGAAGGAAGAAGCTACTT
5281 AGCTAATGAAAGCTGAGACACTTTATTAAAAGCAGGATCTTAAGAGCATTGTTTTTCCTTAAAAACTTTATACTCTCAGA
5361 TAATCTGCAACAACAAAAATTAAGAAATCCCTGACTTTTGTAGAATTCCCACTGTCAAATTCTCACTGACTTATGAGTGT
5441 GAGAGAAGTTATCTTTTGTTTGAATTCTGATAGAACAGTTTAACTCCTTTCTAAGGATATAAAAAATTCATTGGAAAGTG
5521 TGTATATTTCAAAGACTCTCAATTATCTGGACTGAAGGCACTGTTCTCACTATGGCCAGATGAATGGGAGTATTCTGTAC
5601 ATGAATCATGCTGTATTTTAAATCAGGACATCACTTAAGTATTAATGTTGTGTGTACAGATTTTTGTTTTGGGATTTTTT
5681 TTGCCTAAATAAATGTTATAAATTTTATGTAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gggUGGUCGACGAGGGACCGGGu 5'
             |||||      |||||||| 
Target 5' aagACCAG------CCTGGCCCa 3'
 2808 - 2824 152.00 -23.30
2 
miRNA  3' ggguGGU-CGAC--GAG-----GGACCGGGu 5'
              ||| ||||  |||     |||||||: 
Target 5' ttgcCCAGGCTGGTCTCGAACTCCTGGCCTc 3'
 4075 - 4105 145.00 -26.71
3 
miRNA  3' ggGUGGUCGA---C--GAGGGACCGGgu 5'
            ||  ||:|   |  | ||||||||  
Target 5' atCAGGAGTTCGAGACCACCCTGGCCaa 3'
 2289 - 2316 135.00 -20.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30519762 4 COSMIC
COSN26506377 32 COSMIC
COSN1105674 55 COSMIC
COSN31491928 58 COSMIC
COSN31587189 60 COSMIC
COSN30188177 88 COSMIC
COSN29461043 116 COSMIC
COSN8473715 613 COSMIC
COSN15819497 710 COSMIC
COSN4750862 843 COSMIC
COSN1448867 863 COSMIC
COSN26294285 1195 COSMIC
COSN20094828 1674 COSMIC
COSN7223499 1675 COSMIC
COSN20094829 1906 COSMIC
COSN27434418 1906 COSMIC
COSN7223500 2078 COSMIC
COSN18884619 2203 COSMIC
COSN17183261 2332 COSMIC
COSN31960243 2371 COSMIC
COSN25913323 2491 COSMIC
COSN16361277 2617 COSMIC
COSN22183952 3568 COSMIC
COSN5373352 3716 COSMIC
COSN6459614 4250 COSMIC
COSN1448868 4285 COSMIC
COSN16696927 4444 COSMIC
COSN24936891 4664 COSMIC
COSN22825863 4740 COSMIC
COSN6038605 5199 COSMIC
COSN6459616 5307 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs183602283 5 dbSNP
rs773578959 7 dbSNP
rs1163160464 10 dbSNP
rs1460401903 13 dbSNP
rs761137031 14 dbSNP
rs1420661687 17 dbSNP
rs1187981926 24 dbSNP
rs763549743 31 dbSNP
rs34490646 33 dbSNP
rs766880027 33 dbSNP
rs766771140 46 dbSNP
rs745781411 47 dbSNP
rs775207094 47 dbSNP
rs762543804 50 dbSNP
rs1163120789 55 dbSNP
rs1391359428 57 dbSNP
rs943555999 62 dbSNP
rs1431965375 64 dbSNP
rs1336772839 78 dbSNP
rs756248424 80 dbSNP
rs1273752945 84 dbSNP
rs955706245 89 dbSNP
rs1167077685 92 dbSNP
rs1370374198 97 dbSNP
rs1009801357 107 dbSNP
rs1022560047 110 dbSNP
rs968234307 125 dbSNP
rs1268602329 133 dbSNP
rs902078034 135 dbSNP
rs780485784 137 dbSNP
rs1336463348 139 dbSNP
rs1338716452 140 dbSNP
rs926708423 141 dbSNP
rs961103655 143 dbSNP
rs1439179889 148 dbSNP
rs992215169 156 dbSNP
rs1344251950 157 dbSNP
rs531866169 163 dbSNP
rs188241809 164 dbSNP
rs114256017 165 dbSNP
rs535460854 174 dbSNP
rs1038217392 190 dbSNP
rs1348399701 202 dbSNP
rs1201761875 205 dbSNP
rs1299612624 208 dbSNP
rs1191450942 212 dbSNP
rs191880641 214 dbSNP
rs1441294401 224 dbSNP
rs142228334 225 dbSNP
rs539309244 227 dbSNP
rs1306967604 232 dbSNP
rs890867480 239 dbSNP
rs1216410670 245 dbSNP
rs765908333 245 dbSNP
rs1389928781 254 dbSNP
rs1274511486 255 dbSNP
rs961305670 259 dbSNP
rs1466887184 278 dbSNP
rs1373699643 280 dbSNP
rs1174466866 284 dbSNP
rs1446772249 286 dbSNP
rs1352258117 292 dbSNP
rs1330233525 293 dbSNP
rs562741228 300 dbSNP
rs1413927938 316 dbSNP
rs768381680 318 dbSNP
rs1321272145 327 dbSNP
rs1367488476 329 dbSNP
rs533263592 343 dbSNP
rs575796802 345 dbSNP
rs919569011 355 dbSNP
rs543538729 378 dbSNP
rs1395507257 379 dbSNP
rs1177914358 381 dbSNP
rs555147684 384 dbSNP
rs774144212 386 dbSNP
rs1234546695 391 dbSNP
rs891430389 396 dbSNP
rs1296804311 398 dbSNP
rs1206659466 403 dbSNP
rs1438499423 407 dbSNP
rs12080630 410 dbSNP
rs1209056683 412 dbSNP
rs1350487797 419 dbSNP
rs1304712667 420 dbSNP
rs1022548849 427 dbSNP
rs1272667674 435 dbSNP
rs1343827129 436 dbSNP
rs1371735837 436 dbSNP
rs985141030 440 dbSNP
rs1442247370 442 dbSNP
rs1358112919 447 dbSNP
rs910963658 448 dbSNP
rs1209011562 466 dbSNP
rs1436259914 476 dbSNP
rs1375831986 478 dbSNP
rs1157769885 479 dbSNP
rs1417108095 480 dbSNP
rs943822263 486 dbSNP
rs1177754334 489 dbSNP
rs540657060 491 dbSNP
rs1256975192 492 dbSNP
rs902024592 494 dbSNP
rs1002361922 498 dbSNP
rs1281322085 509 dbSNP
rs146401127 517 dbSNP
rs1286918546 523 dbSNP
rs866504006 525 dbSNP
rs1000861239 526 dbSNP
rs113169976 527 dbSNP
rs908641238 539 dbSNP
rs961351665 540 dbSNP
rs1330814131 541 dbSNP
rs760249010 546 dbSNP
rs765843659 552 dbSNP
rs974084298 559 dbSNP
rs1159729442 567 dbSNP
rs1404762368 570 dbSNP
rs182526652 571 dbSNP
rs564688945 594 dbSNP
rs1185825890 597 dbSNP
rs531927625 605 dbSNP
rs1258441169 610 dbSNP
rs932590088 615 dbSNP
rs1485084483 629 dbSNP
rs1244247324 631 dbSNP
rs550277045 637 dbSNP
rs961520372 638 dbSNP
rs972583638 641 dbSNP
rs1334966428 649 dbSNP
rs912362566 651 dbSNP
rs1455716683 654 dbSNP
rs943857789 656 dbSNP
rs1052822998 663 dbSNP
rs79245914 664 dbSNP
rs1289164776 675 dbSNP
rs947015105 687 dbSNP
rs116301767 695 dbSNP
rs985086550 696 dbSNP
rs139354429 698 dbSNP
rs910910410 700 dbSNP
rs1330374147 707 dbSNP
rs1169987823 712 dbSNP
rs1002844345 724 dbSNP
rs1421919262 730 dbSNP
rs12081849 732 dbSNP
rs896612363 733 dbSNP
rs539362477 734 dbSNP
rs375666272 743 dbSNP
rs1015629245 760 dbSNP
rs1216154633 766 dbSNP
rs45581033 767 dbSNP
rs1250338223 768 dbSNP
rs1224618792 770 dbSNP
rs1308837364 772 dbSNP
rs1295881263 775 dbSNP
rs1233239815 781 dbSNP
rs1368563140 783 dbSNP
rs1260598430 789 dbSNP
rs187318553 790 dbSNP
rs746481628 798 dbSNP
rs1220969415 806 dbSNP
rs1391540058 811 dbSNP
rs925523584 814 dbSNP
rs1212191324 820 dbSNP
rs1374952189 826 dbSNP
rs936931346 831 dbSNP
rs1454091032 833 dbSNP
rs1055119752 856 dbSNP
rs974032022 859 dbSNP
rs764400098 860 dbSNP
rs1250455333 877 dbSNP
rs1193524232 880 dbSNP
rs895150893 884 dbSNP
rs1013646166 889 dbSNP
rs954091513 892 dbSNP
rs1345449081 893 dbSNP
rs896951038 907 dbSNP
rs1414505919 909 dbSNP
rs1335036717 911 dbSNP
rs536848674 916 dbSNP
rs1389714460 923 dbSNP
rs1026812837 936 dbSNP
rs1158496498 938 dbSNP
rs1048058 939 dbSNP
rs1459379421 947 dbSNP
rs1373877645 954 dbSNP
rs144339712 959 dbSNP
rs1389671250 966 dbSNP
rs56392930 977 dbSNP
rs1309421694 996 dbSNP
rs1420327935 1006 dbSNP
rs1250682120 1007 dbSNP
rs1348265668 1009 dbSNP
rs1484447198 1013 dbSNP
rs1282038978 1016 dbSNP
rs769490236 1016 dbSNP
rs534664518 1018 dbSNP
rs1258873133 1037 dbSNP
rs1241170110 1038 dbSNP
rs768196339 1047 dbSNP
rs965420890 1048 dbSNP
rs1414264338 1049 dbSNP
rs912970623 1051 dbSNP
rs1353746432 1055 dbSNP
rs947090088 1057 dbSNP
rs912966055 1061 dbSNP
rs750961050 1063 dbSNP
rs1157321998 1066 dbSNP
rs905486315 1074 dbSNP
rs191413738 1086 dbSNP
rs1055776488 1089 dbSNP
rs573108055 1092 dbSNP
rs1163507478 1099 dbSNP
rs756299234 1119 dbSNP
rs896781976 1120 dbSNP
rs1055804049 1125 dbSNP
rs916545629 1127 dbSNP
rs1359123039 1135 dbSNP
rs1446202512 1138 dbSNP
rs949421004 1145 dbSNP
rs1206679076 1147 dbSNP
rs1351244737 1149 dbSNP
rs1046425615 1153 dbSNP
rs1013689041 1154 dbSNP
rs897240961 1166 dbSNP
rs1332823064 1168 dbSNP
rs577679005 1174 dbSNP
rs1176912508 1178 dbSNP
rs1295323812 1185 dbSNP
rs1256942703 1191 dbSNP
rs1326201528 1200 dbSNP
rs1316591278 1201 dbSNP
rs540129208 1203 dbSNP
rs1015743941 1209 dbSNP
rs1384288841 1213 dbSNP
rs1389954554 1220 dbSNP
rs1325861692 1236 dbSNP
rs994234017 1246 dbSNP
rs897343889 1248 dbSNP
rs1419466299 1264 dbSNP
rs1425646482 1269 dbSNP
rs1474838896 1274 dbSNP
rs1048189218 1281 dbSNP
rs1371001425 1283 dbSNP
rs780157334 1290 dbSNP
rs1195006339 1292 dbSNP
rs1465209363 1301 dbSNP
rs1252265130 1308 dbSNP
rs888300939 1312 dbSNP
rs1006770392 1315 dbSNP
rs1018618481 1316 dbSNP
rs1275194560 1316 dbSNP
rs1338917688 1319 dbSNP
rs546556525 1330 dbSNP
rs1268658470 1342 dbSNP
rs1162515818 1345 dbSNP
rs1366423857 1347 dbSNP
rs1027075499 1349 dbSNP
rs564750577 1361 dbSNP
rs965358639 1378 dbSNP
rs1439426418 1379 dbSNP
rs998258853 1385 dbSNP
rs1323579520 1389 dbSNP
rs1408890033 1407 dbSNP
rs1393824543 1408 dbSNP
rs1019972026 1411 dbSNP
rs1169330836 1413 dbSNP
rs954151268 1420 dbSNP
rs967106485 1426 dbSNP
rs183884128 1429 dbSNP
rs148627264 1437 dbSNP
rs1032488582 1444 dbSNP
rs1455477289 1446 dbSNP
rs1019928255 1468 dbSNP
rs1408833107 1469 dbSNP
rs1437348182 1471 dbSNP
rs965315968 1482 dbSNP
rs988737686 1483 dbSNP
rs1303125365 1484 dbSNP
rs1343315562 1484 dbSNP
rs1380625621 1506 dbSNP
rs1373771850 1516 dbSNP
rs1275998157 1529 dbSNP
rs913032633 1535 dbSNP
rs1311146117 1565 dbSNP
rs1382667660 1567 dbSNP
rs562269336 1568 dbSNP
rs1048112 1570 dbSNP
rs1171455809 1573 dbSNP
rs916808326 1574 dbSNP
rs947222852 1577 dbSNP
rs1340559927 1581 dbSNP
rs982500941 1583 dbSNP
rs978890173 1584 dbSNP
rs188981807 1587 dbSNP
rs1184446462 1596 dbSNP
rs1129807 1597 dbSNP
rs1279908179 1603 dbSNP
rs927093774 1607 dbSNP
rs1314353258 1617 dbSNP
rs3177646 1624 dbSNP
rs1279927508 1637 dbSNP
rs1223775809 1638 dbSNP
rs936984419 1642 dbSNP
rs77332181 1643 dbSNP
rs559354490 1653 dbSNP
rs942522778 1654 dbSNP
rs1354373107 1656 dbSNP
rs1310726407 1658 dbSNP
rs1039579726 1659 dbSNP
rs1398813208 1663 dbSNP
rs199878820 1663 dbSNP
rs901067561 1663 dbSNP
rs1257044150 1674 dbSNP
rs34249507 1674 dbSNP
rs918160530 1674 dbSNP
rs77742320 1675 dbSNP
rs1037247006 1680 dbSNP
rs897304712 1686 dbSNP
rs995701384 1687 dbSNP
rs1315587946 1693 dbSNP
rs1228429120 1704 dbSNP
rs1333570040 1708 dbSNP
rs567912665 1715 dbSNP
rs1388073935 1725 dbSNP
rs889899185 1726 dbSNP
rs1007297485 1728 dbSNP
rs1032769923 1729 dbSNP
rs1019594284 1733 dbSNP
rs1428411112 1736 dbSNP
rs538548796 1737 dbSNP
rs958515266 1740 dbSNP
rs1176286308 1747 dbSNP
rs1360562236 1748 dbSNP
rs965375816 1751 dbSNP
rs1417320577 1755 dbSNP
rs1464274839 1756 dbSNP
rs1163052075 1757 dbSNP
rs72895452 1763 dbSNP
rs1388822562 1767 dbSNP
rs1414812469 1775 dbSNP
rs193029286 1778 dbSNP
rs982405399 1784 dbSNP
rs17107414 1795 dbSNP
rs929988903 1805 dbSNP
rs550098268 1816 dbSNP
rs1214379055 1830 dbSNP
rs185766736 1831 dbSNP
rs1270798111 1837 dbSNP
rs909968535 1839 dbSNP
rs1314138185 1851 dbSNP
rs1321899288 1864 dbSNP
rs1208332394 1866 dbSNP
rs1262583795 1867 dbSNP
rs1465444789 1871 dbSNP
rs758410113 1876 dbSNP
rs1298229051 1884 dbSNP
rs1440168937 1885 dbSNP
rs1392204137 1886 dbSNP
rs1210448426 1889 dbSNP
rs1039931489 1890 dbSNP
rs1170057384 1890 dbSNP
rs1350641984 1890 dbSNP
rs546178877 1890 dbSNP
rs879095966 1890 dbSNP
rs79416985 1892 dbSNP
rs1189768792 1894 dbSNP
rs1454176712 1895 dbSNP
rs1474933007 1897 dbSNP
rs1191534914 1906 dbSNP
rs933877424 1906 dbSNP
rs1449178201 1907 dbSNP
rs200985165 1908 dbSNP
rs80047585 1914 dbSNP
rs539140922 1915 dbSNP
rs1411988202 1916 dbSNP
rs1458366219 1919 dbSNP
rs1323087578 1922 dbSNP
rs1343968470 1925 dbSNP
rs1233304321 1933 dbSNP
rs927033162 1947 dbSNP
rs958515360 1948 dbSNP
rs1303356127 1963 dbSNP
rs1388557676 1968 dbSNP
rs1368458357 1982 dbSNP
rs1430699406 1983 dbSNP
rs17107416 1984 dbSNP
rs999854560 1986 dbSNP
rs916874162 1990 dbSNP
rs1370261961 1991 dbSNP
rs1434521067 1994 dbSNP
rs534436518 1995 dbSNP
rs1037215663 2010 dbSNP
rs894195172 2017 dbSNP
rs553091305 2024 dbSNP
rs1252110889 2028 dbSNP
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rs951673139 2118 dbSNP
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rs11206028 2211 dbSNP
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rs768447507 2300 dbSNP
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rs937786363 5368 dbSNP
rs1489993622 5370 dbSNP
rs1055867331 5372 dbSNP
rs895991195 5375 dbSNP
rs78335417 5392 dbSNP
rs1037775557 5401 dbSNP
rs1469215570 5402 dbSNP
rs1229090438 5409 dbSNP
rs1159086685 5411 dbSNP
rs900628868 5431 dbSNP
rs556339259 5435 dbSNP
rs1051733884 5442 dbSNP
rs572563521 5449 dbSNP
rs890464525 5452 dbSNP
rs1347304656 5461 dbSNP
rs1317438453 5474 dbSNP
rs772730397 5478 dbSNP
rs574529245 5487 dbSNP
rs749061019 5487 dbSNP
rs1395785361 5509 dbSNP
rs776786651 5536 dbSNP
rs1031350062 5537 dbSNP
rs1467340621 5543 dbSNP
rs893628334 5544 dbSNP
rs1406464798 5547 dbSNP
rs541935370 5562 dbSNP
rs953458029 5570 dbSNP
rs1023337907 5600 dbSNP
rs1233083580 5601 dbSNP
rs1248961679 5602 dbSNP
rs187502200 5604 dbSNP
rs543191743 5612 dbSNP
rs1247749686 5629 dbSNP
rs986231414 5635 dbSNP
rs1034606870 5640 dbSNP
rs1285808787 5642 dbSNP
rs763280618 5649 dbSNP
rs1018748512 5654 dbSNP
rs951067676 5655 dbSNP
rs1490574446 5658 dbSNP
rs983691917 5662 dbSNP
rs1325332479 5663 dbSNP
rs111675772 5669 dbSNP
rs768014093 5674 dbSNP
rs1326901609 5675 dbSNP
rs200259722 5675 dbSNP
rs537206889 5675 dbSNP
rs1480153634 5686 dbSNP
rs1401284537 5690 dbSNP
rs1300319457 5691 dbSNP
rs1336400645 5696 dbSNP
rs942211558 5700 dbSNP
rs974015198 5702 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ggguggucgacgaGGGACCGGGu 5'
                       ||||| |:| 
Target 5' --aaauggugaaaCCCUGUCUCu 3'
 		1 - 21
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_024646 | 3UTR | AGGAGUUCAAGACCAGCCUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000294353.6 | 3UTR | CAAAUGGUGAAACCCUGUCUCUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000294353.6 | 3UTR | AAAUGGUGAAACCCUGUCUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
87 hsa-miR-4640-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT100106 ABT1 activator of basal transcription 1 2 8
MIRT248144 LMBR1L limb development membrane protein 1 like 2 2
MIRT327062 KLHL15 kelch like family member 15 2 2
MIRT347231 GATAD2A GATA zinc finger domain containing 2A 2 2
MIRT450221 CENPN centromere protein N 2 2
MIRT451264 NDUFA11 NADH:ubiquinone oxidoreductase subunit A11 2 2
MIRT452701 C1orf226 chromosome 1 open reading frame 226 2 2
MIRT453212 CERS1 ceramide synthase 1 2 2
MIRT454822 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT454883 RAD50 RAD50 double strand break repair protein 2 2
MIRT455783 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT455858 TMEM254 transmembrane protein 254 2 2
MIRT457615 UPK3BL uroplakin 3B like 1 2 2
MIRT457822 ITPRIP inositol 1,4,5-trisphosphate receptor interacting protein 2 4
MIRT458344 NOC2L NOC2 like nucleolar associated transcriptional repressor 2 2
MIRT458376 ITM2C integral membrane protein 2C 2 2
MIRT458928 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459066 WFIKKN2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 2 2
MIRT460138 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460818 FSTL4 follistatin like 4 2 2
MIRT461285 COX10 COX10, heme A:farnesyltransferase cytochrome c oxidase assembly factor 2 2
MIRT462738 EFNB1 ephrin B1 2 2
MIRT464556 UBTF upstream binding transcription factor, RNA polymerase I 2 2
MIRT477910 DUSP2 dual specificity phosphatase 2 2 2
MIRT479073 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 4
MIRT479534 CDC5L cell division cycle 5 like 2 4
MIRT485628 EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 2 2
MIRT489896 PPIC peptidylprolyl isomerase C 2 4
MIRT490737 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT491201 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT492681 PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein 2 2
MIRT494593 ATG7 autophagy related 7 2 2
MIRT495061 PADI3 peptidyl arginine deiminase 3 2 4
MIRT496623 TMEM67 transmembrane protein 67 2 2
MIRT497177 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT498217 TLN2 talin 2 2 2
MIRT498306 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT499668 NPHP3 nephrocystin 3 2 2
MIRT508080 ANKRD52 ankyrin repeat domain 52 2 2
MIRT509707 ANKRD23 ankyrin repeat domain 23 2 2
MIRT509841 FOS Fos proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT512814 ARRDC2 arrestin domain containing 2 2 2
MIRT513353 SLIT1 slit guidance ligand 1 2 2
MIRT514293 FXYD5 FXYD domain containing ion transport regulator 5 2 2
MIRT516598 FAM89A family with sequence similarity 89 member A 2 4
MIRT516616 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT518348 CCL5 C-C motif chemokine ligand 5 2 2
MIRT520130 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT522072 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT526461 OSBPL5 oxysterol binding protein like 5 2 2
MIRT528278 MBL2 mannose binding lectin 2 2 2
MIRT534844 RAB15 RAB15, member RAS oncogene family 2 4
MIRT542245 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT543299 ZNF585B zinc finger protein 585B 2 2
MIRT552456 ZNF410 zinc finger protein 410 2 2
MIRT553641 TJAP1 tight junction associated protein 1 2 2
MIRT557103 HOXA3 homeobox A3 2 2
MIRT570782 FANCA Fanconi anemia complementation group A 2 2
MIRT630912 ZMAT2 zinc finger matrin-type 2 2 2
MIRT631034 ZNF878 zinc finger protein 878 2 2
MIRT639017 AAK1 AP2 associated kinase 1 2 2
MIRT648596 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT648939 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 2 2
MIRT652834 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT659347 CSRP1 cysteine and glycine rich protein 1 2 2
MIRT664163 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT670511 ZSCAN22 zinc finger and SCAN domain containing 22 2 2
MIRT671246 TMEM41B transmembrane protein 41B 2 2
MIRT672120 ATP6V0A2 ATPase H+ transporting V0 subunit a2 2 2
MIRT672313 CD3D CD3d molecule 2 2
MIRT672543 BRMS1L breast cancer metastasis-suppressor 1 like 2 2
MIRT673036 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT673814 DARS aspartyl-tRNA synthetase 2 2
MIRT674858 GINM1 glycoprotein integral membrane 1 2 2
MIRT674970 SH3BP2 SH3 domain binding protein 2 2 2
MIRT675185 KIF1C kinesin family member 1C 2 2
MIRT675219 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT675558 MED16 mediator complex subunit 16 2 2
MIRT682566 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 2 2
MIRT684640 PDE4C phosphodiesterase 4C 2 2
MIRT689722 ATXN2 ataxin 2 2 2
MIRT693594 SLC39A1 solute carrier family 39 member 1 2 2
MIRT704745 CDKN2B cyclin dependent kinase inhibitor 2B 2 2
MIRT712779 ZNF154 zinc finger protein 154 2 2
MIRT718118 OTOF otoferlin 2 2
MIRT720115 SAMD4A sterile alpha motif domain containing 4A 2 2
MIRT720275 EIF1AD eukaryotic translation initiation factor 1A domain containing 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4640 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4640 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4640 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4640-5p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4640-5p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4640-5p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-4640-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4640-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4640-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4640-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4640-5p Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)

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