pre-miRNA Information
pre-miRNA hsa-mir-412   
Genomic Coordinates chr14: 101065447 - 101065537
Synonyms MIRN412, hsa-mir-412, MIR412
Description Homo sapiens miR-412 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-412-3p
Sequence 54| ACUUCACCUGGUCCACUAGCCGU |76
Evidence Not_experimental
Experiments
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
rs61992671 18 GWAS
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs369997462 1 dbSNP
rs1439693090 7 dbSNP
rs1301668924 11 dbSNP
rs534204576 13 dbSNP
rs775386036 14 dbSNP
rs762832140 15 dbSNP
rs1203323285 16 dbSNP
rs61992671 18 dbSNP
rs1022012324 19 dbSNP
rs1207609936 20 dbSNP
rs139967426 21 dbSNP
rs539487075 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CYB561A3   
Synonyms CYBASC3, LCYTB
Description cytochrome b561 family member A3
Transcript NM_001161452   
Other Transcripts NM_001161454 , NM_153611   
Expression
Putative miRNA Targets on CYB561A3
3'UTR of CYB561A3
(miRNA target sites are highlighted)
>CYB561A3|NM_001161452|3'UTR
   1 AGCAGCAGGAAGGGGCTCCCAAGAGCTCCTGGTGGTGCAGCCTGTGCTCCCCTCAGAAGCTCTGCTCTTCCCAGGGCTCC
  81 CGGCTGGTTTCAGCAGGCGACTTTCTTCCAATGCTGGGCCCAGACTTCTTGCCTGGGTGCTGGCCTGCCCTCTCCGGCCG
 161 CTTGCTGCCTGTCTGCTTTCCTTGGTGGCTTTGCCTGGGTGCTGGGCCTGCCCTCTCCGGCCGCTTGCTGCCTGTCTGCT
 241 TTCCTTGGTGGCTTTGCCTGGGTGCTGGGCCTGCCTTCTCTGGCTGCTTGCTGCCTGTCTGCTTTCCTTGGTGGCTTTGG
 321 CTTCTGCACTCCTTGGCGTCAGCCTCTCAGGTCCTCCATTCACACGAGGTCCTCCTCGCTCTGGCCGCTCTTGCTGCTCC
 401 TGTCTGAAGAAATCAGACTGATTTCCTCTTAAGACTCCTAGGGATGTGGTGAAGAGCTGGGACTCAAGTGCAGTCCACGG
 481 TGTGAAACATGAGGGAGGTGAGGTGTCCGTCCACTTCCCCCATAAAGGTGTGCATTTCAGTTAGGCTGCCCCGCCACAGA
 561 GCAGGCTTCATCTGCTCTGCCATCCAGCCCCATCTGGATGTGAGGTGGGGTGGAGACATCATGGGGTGATTGCAGAAAGG
 641 GGGAGTGGCGGCCCACGCAGCTTCTGCTGAGGAGCTGACCGCTCTGAGCTGTTCTGTTTCGTATTGCTGCTCTGTGTCTG
 721 CATGTATTGTGACCGTGCGGCTCCACCTCTTCCAGCTGCTGCTACAGCTGAGGCCTGGATCCCGGCCTTTCCCTGTGACT
 801 TACGTGTCTGTCACCGGCAGGCAGCCCTACAAATCCTGGTGACCTGCTCTCCCAAGAACAGAGCCTGTCCCCAGATGTCC
 881 CAGTAGCGATGAGTAACAGAGGTGGCTGTGGACTTCCTCTACTTCTCCTTGCTGGATCAGGGCCTTCCTGCCTCCCGCTG
 961 GGCAGGTCTGGCCTTGCTCTCTTGGCAGGGCCCCAGCCCCTCTGACCACTCTGCAGCTCACCATGCAGCTGATGCCAAAG
1041 TTGTGGTGTCCAGTGTGCAGCAGCCCTGGGAGCCACTGCCACCTTCAGAGGGGTTCCTTGCTGAGACCCACATTGCTTCA
1121 CCTGGCCCCACCATGGCTGCTTGCCTGGCCCAACCTAGCGTTCTGTGCCATGCTAGAGCTTGAGCTGTTGCTCTTCTTCA
1201 GGGGAGGAAATAGGGTGGAGAGCGGGAAGGGTCTTGCTCCTAAGTGTTGCTGCTGTGGCTTTTTTGCCTTCTCCAAAGAC
1281 GCACTGCCAGGTCCCAAGCTTCAGACTGCTGTGCTTAGTAAGCAAGTGAGAAGCCTGGGGTTTGGAGCCCACCTACTCTC
1361 TGGCAGCATCAGCATCCTACTCCTGGCAACATCAGGCCAACGTCCACCCCAGCCTCACATTGCCAGATGTTGGCAGAAGG
1441 GCTAATATTGACCGTCTTGACTGGCTGGAGCCTTCAAAGCCACTGGGATGTCCTCCAGGCACCTGGGTCCCATGACCAGC
1521 TCCCCATCTCCATAGGGGTAGGCATTTCACTGGTTTATGAAGCTCGAGTTTCATTAAATATGTTAAGAATCAAAGCTGTC
1601 TTTGTTCAGGCTGCTATAACAAAAATATAATAGCCTGGGTGGCTTAAACAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugccGAUCACCUGGUCCACUUCa 5'
              |||| |||:  ||||||| 
Target 5' actcCTAG-GGATGTGGTGAAGa 3'
434 - 455 162.00 -19.60
2
miRNA  3' ugCCGAUCAC-CUGGUCCACUUCa 5'
            || | ||| |:: :||||:|| 
Target 5' ctGGAT-GTGAGGTGGGGTGGAGa 3'
594 - 616 140.00 -20.40
3
miRNA  3' ugCCGAUCACCUGGUCCACUUCa 5'
            ||  ||   |: :||||:|| 
Target 5' caGGGGAGGAAATAGGGTGGAGa 3'
1199 - 1221 133.00 -14.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26972557 28 COSMIC
COSN30143730 88 COSMIC
COSN31561146 99 COSMIC
COSN1135546 122 COSMIC
COSN2531933 213 COSMIC
COSN2531932 218 COSMIC
COSN2531931 222 COSMIC
COSN29370945 569 COSMIC
COSN1135544 600 COSMIC
COSN31973887 783 COSMIC
COSN24294019 822 COSMIC
COSN31781505 829 COSMIC
COSN30541365 843 COSMIC
COSN28860243 938 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1294692896 3 dbSNP
rs905967913 8 dbSNP
rs1023456157 9 dbSNP
rs566500967 12 dbSNP
rs898655347 13 dbSNP
rs376788904 14 dbSNP
rs763673265 15 dbSNP
rs1389687872 16 dbSNP
rs1444498718 20 dbSNP
rs1163661147 21 dbSNP
rs760284615 24 dbSNP
rs752356292 26 dbSNP
rs1168026692 32 dbSNP
rs940284767 37 dbSNP
rs1031490842 38 dbSNP
rs767292537 39 dbSNP
rs1371425071 45 dbSNP
rs1218500488 59 dbSNP
rs1298728056 80 dbSNP
rs373552140 81 dbSNP
rs370802615 82 dbSNP
rs1012087347 99 dbSNP
rs79792967 109 dbSNP
rs1260910034 111 dbSNP
rs1489002186 112 dbSNP
rs746387728 115 dbSNP
rs974896577 127 dbSNP
rs1423239841 128 dbSNP
rs1430552517 136 dbSNP
rs140016863 139 dbSNP
rs897008193 144 dbSNP
rs372519055 147 dbSNP
rs756810006 148 dbSNP
rs1167005955 152 dbSNP
rs746571098 155 dbSNP
rs988635232 156 dbSNP
rs955961394 159 dbSNP
rs1363590413 160 dbSNP
rs1382461073 165 dbSNP
rs147478513 169 dbSNP
rs1386788278 171 dbSNP
rs981467823 181 dbSNP
rs1322852575 189 dbSNP
rs113572858 195 dbSNP
rs1487082213 199 dbSNP
rs932196961 203 dbSNP
rs113361441 213 dbSNP
rs111693851 218 dbSNP
rs531913173 219 dbSNP
rs113025505 222 dbSNP
rs1162377751 223 dbSNP
rs995997994 225 dbSNP
rs1346725006 238 dbSNP
rs1420123384 239 dbSNP
rs1403963153 243 dbSNP
rs11230671 258 dbSNP
rs376630188 273 dbSNP
rs1466703720 276 dbSNP
rs1016189842 280 dbSNP
rs1380465048 281 dbSNP
rs188092779 283 dbSNP
rs1004313945 285 dbSNP
rs957075385 288 dbSNP
rs1031208900 301 dbSNP
rs201730663 301 dbSNP
rs1177886128 302 dbSNP
rs1447429396 304 dbSNP
rs543346644 307 dbSNP
rs1217883414 309 dbSNP
rs1285508934 312 dbSNP
rs529558396 314 dbSNP
rs1389543185 316 dbSNP
rs982155769 329 dbSNP
rs891406272 337 dbSNP
rs970795594 338 dbSNP
rs1051278657 341 dbSNP
rs574334638 346 dbSNP
rs1012214889 349 dbSNP
rs1440011503 349 dbSNP
rs900169920 353 dbSNP
rs1334457559 354 dbSNP
rs540195847 365 dbSNP
rs1038665312 366 dbSNP
rs1282931231 373 dbSNP
rs1379782654 378 dbSNP
rs527560165 386 dbSNP
rs1257389317 387 dbSNP
rs866572313 393 dbSNP
rs1027296746 409 dbSNP
rs557804415 411 dbSNP
rs989076307 416 dbSNP
rs994135143 417 dbSNP
rs934465336 440 dbSNP
rs928568380 458 dbSNP
rs1208124894 462 dbSNP
rs1380708397 465 dbSNP
rs753846074 478 dbSNP
rs1458180803 486 dbSNP
rs1312027845 490 dbSNP
rs1396832947 491 dbSNP
rs879029045 493 dbSNP
rs969922892 494 dbSNP
rs1455451885 502 dbSNP
rs1040907015 508 dbSNP
rs1424098396 509 dbSNP
rs544280972 512 dbSNP
rs943728750 516 dbSNP
rs1330317258 517 dbSNP
rs1296657458 519 dbSNP
rs1448200255 520 dbSNP
rs974071579 527 dbSNP
rs891379815 534 dbSNP
rs764361580 540 dbSNP
rs12419865 542 dbSNP
rs932686486 548 dbSNP
rs1015660663 550 dbSNP
rs1169163388 552 dbSNP
rs1049396182 553 dbSNP
rs556842351 558 dbSNP
rs1004372563 563 dbSNP
rs955536857 576 dbSNP
rs1029747428 585 dbSNP
rs1458311205 607 dbSNP
rs1186304130 609 dbSNP
rs997064234 610 dbSNP
rs1469638200 624 dbSNP
rs1054444082 630 dbSNP
rs555260280 633 dbSNP
rs1257892238 639 dbSNP
rs1476855645 639 dbSNP
rs182782568 640 dbSNP
rs1039130122 641 dbSNP
rs1170590871 644 dbSNP
rs1045890 646 dbSNP
rs982250574 649 dbSNP
rs1275737856 650 dbSNP
rs2290387 656 dbSNP
rs916649903 657 dbSNP
rs1354783421 667 dbSNP
rs1011224528 672 dbSNP
rs892908105 673 dbSNP
rs1342321949 680 dbSNP
rs546689340 681 dbSNP
rs761849538 689 dbSNP
rs1027018427 694 dbSNP
rs1256009069 696 dbSNP
rs1358387393 700 dbSNP
rs1210173812 701 dbSNP
rs994455889 706 dbSNP
rs1197308445 707 dbSNP
rs1449708105 711 dbSNP
rs1451566810 714 dbSNP
rs1263541367 715 dbSNP
rs1477204006 718 dbSNP
rs1268412038 719 dbSNP
rs1212016870 720 dbSNP
rs774479891 723 dbSNP
rs1272122877 727 dbSNP
rs1226989963 730 dbSNP
rs1342318872 731 dbSNP
rs774014018 734 dbSNP
rs1008076337 735 dbSNP
rs535785719 738 dbSNP
rs764286283 739 dbSNP
rs1399411403 743 dbSNP
rs1433301134 744 dbSNP
rs1276423453 747 dbSNP
rs1342142461 753 dbSNP
rs1011364907 754 dbSNP
rs1388363192 755 dbSNP
rs892785769 761 dbSNP
rs1218596719 763 dbSNP
rs1052797121 765 dbSNP
rs1463930789 771 dbSNP
rs1213759554 773 dbSNP
rs1247801250 776 dbSNP
rs1368911566 777 dbSNP
rs773226751 781 dbSNP
rs769830027 783 dbSNP
rs371157549 784 dbSNP
rs768848652 786 dbSNP
rs1160827301 788 dbSNP
rs1477955059 790 dbSNP
rs1361369353 791 dbSNP
rs1378774614 792 dbSNP
rs1201456835 793 dbSNP
rs1471838681 801 dbSNP
rs548393372 803 dbSNP
rs190949677 804 dbSNP
rs539405227 808 dbSNP
rs1274421659 813 dbSNP
rs747320182 815 dbSNP
rs1344204518 816 dbSNP
rs908659080 822 dbSNP
rs1321009555 824 dbSNP
rs1235111405 830 dbSNP
rs1348340208 849 dbSNP
rs1287519248 850 dbSNP
rs780247040 851 dbSNP
rs982832180 861 dbSNP
rs972776949 862 dbSNP
rs570583486 867 dbSNP
rs1029796775 869 dbSNP
rs961560585 871 dbSNP
rs1414043407 875 dbSNP
rs1019530377 883 dbSNP
rs996944938 887 dbSNP
rs953856775 888 dbSNP
rs1456133487 890 dbSNP
rs1444170324 897 dbSNP
rs1381289340 901 dbSNP
rs1439515198 903 dbSNP
rs1329103119 910 dbSNP
rs1379651911 926 dbSNP
rs964666399 929 dbSNP
rs1322844707 933 dbSNP
rs1302344188 953 dbSNP
rs1399914985 955 dbSNP
rs1022530228 956 dbSNP
rs1011695426 957 dbSNP
rs531580893 959 dbSNP
rs1456249177 963 dbSNP
rs1302879366 964 dbSNP
rs550723512 970 dbSNP
rs1231837818 979 dbSNP
rs892892248 983 dbSNP
rs1319448462 1003 dbSNP
rs1201040732 1006 dbSNP
rs1239390667 1012 dbSNP
rs1457592124 1018 dbSNP
rs770223455 1042 dbSNP
rs1175865936 1049 dbSNP
rs367724244 1053 dbSNP
rs1434002461 1054 dbSNP
rs1160897710 1071 dbSNP
rs1175679116 1073 dbSNP
rs187383096 1078 dbSNP
rs1246451603 1079 dbSNP
rs746308761 1082 dbSNP
rs1171282343 1084 dbSNP
rs7949479 1091 dbSNP
rs1444221362 1106 dbSNP
rs1295099204 1108 dbSNP
rs1367810749 1112 dbSNP
rs1246721878 1113 dbSNP
rs1045610157 1117 dbSNP
rs948563178 1121 dbSNP
rs1341832271 1126 dbSNP
rs1465382192 1128 dbSNP
rs1259205614 1160 dbSNP
rs915843146 1166 dbSNP
rs1317850857 1182 dbSNP
rs1038287837 1183 dbSNP
rs1205882243 1190 dbSNP
rs1046627082 1191 dbSNP
rs1489032295 1191 dbSNP
rs1190822723 1193 dbSNP
rs183080147 1195 dbSNP
rs949669730 1201 dbSNP
rs941235085 1204 dbSNP
rs895281928 1205 dbSNP
rs560590989 1211 dbSNP
rs1055300531 1217 dbSNP
rs931365070 1220 dbSNP
rs982716690 1223 dbSNP
rs955472814 1229 dbSNP
rs1457280176 1234 dbSNP
rs1300891304 1239 dbSNP
rs920034479 1240 dbSNP
rs1400011395 1241 dbSNP
rs973257078 1244 dbSNP
rs939986569 1245 dbSNP
rs79346879 1254 dbSNP
rs3167 1264 dbSNP
rs201632812 1266 dbSNP
rs1213288518 1267 dbSNP
rs975579206 1268 dbSNP
rs1373193297 1278 dbSNP
rs117001515 1280 dbSNP
rs953951783 1281 dbSNP
rs118134551 1290 dbSNP
rs1489411700 1291 dbSNP
rs1023011319 1297 dbSNP
rs560825943 1303 dbSNP
rs1388691322 1304 dbSNP
rs1028123304 1314 dbSNP
rs3166 1327 dbSNP
rs990020417 1330 dbSNP
rs1322174620 1335 dbSNP
rs1183524258 1337 dbSNP
rs989753692 1346 dbSNP
rs1422971524 1372 dbSNP
rs373561047 1401 dbSNP
rs878906046 1402 dbSNP
rs999049171 1407 dbSNP
rs575643554 1408 dbSNP
rs906867631 1412 dbSNP
rs1342916652 1420 dbSNP
rs546276567 1423 dbSNP
rs1479201703 1431 dbSNP
rs1305046409 1440 dbSNP
rs998499280 1440 dbSNP
rs746516056 1444 dbSNP
rs1024048784 1446 dbSNP
rs1188447001 1452 dbSNP
rs1013199476 1454 dbSNP
rs894311052 1480 dbSNP
rs1285662580 1483 dbSNP
rs1038576817 1512 dbSNP
rs1445343101 1517 dbSNP
rs1450199388 1523 dbSNP
rs1249922741 1525 dbSNP
rs4939516 1526 dbSNP
rs1237920885 1531 dbSNP
rs116020035 1533 dbSNP
rs1381898398 1535 dbSNP
rs1047074198 1537 dbSNP
rs933977792 1538 dbSNP
rs573106089 1553 dbSNP
rs1157660203 1563 dbSNP
rs1279599823 1565 dbSNP
rs922721253 1566 dbSNP
rs759650756 1581 dbSNP
rs1452520307 1584 dbSNP
rs1037117082 1590 dbSNP
rs942742159 1606 dbSNP
rs190919075 1613 dbSNP
rs1448060009 1626 dbSNP
rs940121038 1631 dbSNP
rs990026850 1638 dbSNP
rs1220980431 1641 dbSNP
rs912533782 1648 dbSNP
rs986803448 1649 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugccgaucaCCUGGUCCACUUCa 5'
                   |||:  ||||||| 
Target 5' ---------GGAUGUGGUGAAGa 3'
1 - 14
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000294072.4 | 3UTR | UAGGGAUGUGGUGAAGAGCUGGGACUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000294072.4 | 3UTR | GGAUGUGGUGAAGAGCUGGGACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
138 hsa-miR-412-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT005780 ACVR1C activin A receptor type 1C 1 1
MIRT062013 YOD1 YOD1 deubiquitinase 2 2
MIRT345112 ATXN7L3 ataxin 7 like 3 2 2
MIRT383735 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 2
MIRT396956 CELF1 CUGBP Elav-like family member 1 2 2
MIRT439280 XIAP X-linked inhibitor of apoptosis 1 1
MIRT439313 VAT1 vesicle amine transport 1 1 1
MIRT439375 TUBA1A tubulin alpha 1a 1 1
MIRT439418 TMOD1 tropomodulin 1 1 1
MIRT439503 SURF4 surfeit 4 1 1
MIRT439563 SON SON DNA binding protein 1 1
MIRT439598 SLC3A2 solute carrier family 3 member 2 1 1
MIRT439670 SETD1B SET domain containing 1B 1 1
MIRT439767 RMND5A required for meiotic nuclear division 5 homolog A 1 1
MIRT439922 PPL periplakin 1 1
MIRT439947 PLEKHA6 pleckstrin homology domain containing A6 1 1
MIRT439952 PLCB4 phospholipase C beta 4 1 1
MIRT439961 PKD1 polycystin 1, transient receptor potential channel interacting 1 1
MIRT440005 PEG3 paternally expressed 3 1 1
MIRT440061 OSBPL8 oxysterol binding protein like 8 1 1
MIRT440166 MYH14 myosin heavy chain 14 1 1
MIRT440276 MAPK8IP1 mitogen-activated protein kinase 8 interacting protein 1 1 1
MIRT440437 IPO13 importin 13 1 1
MIRT440441 INTS3 integrator complex subunit 3 1 1
MIRT440448 INS insulin 1 1
MIRT440461 IGF2R insulin like growth factor 2 receptor 1 1
MIRT440472 IARS isoleucyl-tRNA synthetase 1 1
MIRT440530 GUCY1A3 guanylate cyclase 1 soluble subunit alpha 1 1
MIRT440542 GOLGA2 golgin A2 1 1
MIRT440569 GIGYF1 GRB10 interacting GYF protein 1 1 1
MIRT440608 FTSJD2 cap methyltransferase 1 1 1
MIRT440750 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 1 1
MIRT440781 DOT1L DOT1 like histone lysine methyltransferase 1 1
MIRT440804 DNAJA4 DnaJ heat shock protein family (Hsp40) member A4 1 1
MIRT440867 CSDE1 cold shock domain containing E1 1 1
MIRT440890 CPEB4 cytoplasmic polyadenylation element binding protein 4 1 1
MIRT440917 COL1A1 collagen type I alpha 1 chain 1 1
MIRT440967 CDH22 cadherin 22 1 1
MIRT440968 CDH2 cadherin 2 1 1
MIRT441024 CALR calreticulin 1 1
MIRT441278 ACTB actin beta 1 1
MIRT448421 TNFAIP3 TNF alpha induced protein 3 2 2
MIRT462833 BCL3 B-cell CLL/lymphoma 3 2 2
MIRT465062 TSR1 TSR1, ribosome maturation factor 2 2
MIRT476050 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT485318 MZT1 mitotic spindle organizing protein 1 2 4
MIRT493584 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 6
MIRT494567 BAK1 BCL2 antagonist/killer 1 2 2
MIRT497393 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT503250 ZNF257 zinc finger protein 257 2 10
MIRT503656 ZNF138 zinc finger protein 138 2 10
MIRT505882 RNF219 ring finger protein 219 2 2
MIRT507525 DSTN destrin, actin depolymerizing factor 2 4
MIRT510663 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT514682 ZNF701 zinc finger protein 701 2 4
MIRT515370 ZNF208 zinc finger protein 208 2 6
MIRT525237 KCNJ12 potassium voltage-gated channel subfamily J member 12 2 2
MIRT527963 MTAP methylthioadenosine phosphorylase 2 2
MIRT528482 STAMBPL1 STAM binding protein like 1 2 2
MIRT529909 C1orf64 steroid receptor associated and regulated protein 2 4
MIRT531558 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT532234 KLF2 Kruppel like factor 2 2 4
MIRT532480 HOXA13 homeobox A13 2 2
MIRT535544 P2RY2 purinergic receptor P2Y2 2 2
MIRT547311 NR1D2 nuclear receptor subfamily 1 group D member 2 2 2
MIRT551795 ZNF117 zinc finger protein 117 2 4
MIRT554939 RAP1A RAP1A, member of RAS oncogene family 2 2
MIRT558171 EIF5A2 eukaryotic translation initiation factor 5A2 2 2
MIRT568771 LY6K lymphocyte antigen 6 family member K 2 2
MIRT570766 ZNF99 zinc finger protein 99 2 2
MIRT572405 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT573396 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT610403 RXRB retinoid X receptor beta 2 2
MIRT610886 SCN8A sodium voltage-gated channel alpha subunit 8 2 2
MIRT611197 TMEM105 transmembrane protein 105 2 2
MIRT611244 ZNF550 zinc finger protein 550 2 2
MIRT615669 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 4
MIRT617974 DOCK4 dedicator of cytokinesis 4 2 2
MIRT619150 ZNF326 zinc finger protein 326 2 2
MIRT619608 MKKS McKusick-Kaufman syndrome 2 2
MIRT621053 DGKD diacylglycerol kinase delta 2 2
MIRT623665 HRK harakiri, BCL2 interacting protein 2 2
MIRT624883 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT624939 MARCH2 membrane associated ring-CH-type finger 2 2 2
MIRT634198 TMOD2 tropomodulin 2 2 4
MIRT636727 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT637741 POLR3K RNA polymerase III subunit K 2 2
MIRT638002 ZC3H13 zinc finger CCCH-type containing 13 2 2
MIRT640395 ZNF785 zinc finger protein 785 2 2
MIRT640505 ANTXR1 anthrax toxin receptor 1 2 2
MIRT641293 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT641863 STOML1 stomatin like 1 2 2
MIRT642600 C14orf180 chromosome 14 open reading frame 180 2 2
MIRT642895 CASP1 caspase 1 2 2
MIRT643967 FHL2 four and a half LIM domains 2 2 4
MIRT645237 KCTD12 potassium channel tetramerization domain containing 12 2 2
MIRT646621 CENPL centromere protein L 2 2
MIRT648620 CYB561A3 cytochrome b561 family member A3 2 2
MIRT648908 ZNF551 zinc finger protein 551 2 2
MIRT649439 HIBADH 3-hydroxyisobutyrate dehydrogenase 2 2
MIRT650637 LTF lactotransferrin 2 2
MIRT650971 STARD3NL STARD3 N-terminal like 2 2
MIRT651067 ZNF518B zinc finger protein 518B 2 4
MIRT652384 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT653958 SEPN1 selenoprotein N 2 2
MIRT656885 KIF1C kinesin family member 1C 2 2
MIRT657965 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT658080 FOXR2 forkhead box R2 2 2
MIRT662570 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT663089 METTL10 EEF1A lysine methyltransferase 2 2 2
MIRT683705 ZNF195 zinc finger protein 195 2 2
MIRT683835 ZNF682 zinc finger protein 682 2 2
MIRT706811 APOL4 apolipoprotein L4 2 2
MIRT707575 DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 2 2
MIRT708606 ZNF260 zinc finger protein 260 2 2
MIRT708859 TMSB4X thymosin beta 4, X-linked 2 2
MIRT709861 PDIK1L PDLIM1 interacting kinase 1 like 2 2
MIRT709987 RBM41 RNA binding motif protein 41 2 2
MIRT710098 KPNA5 karyopherin subunit alpha 5 2 2
MIRT710211 ENAH ENAH, actin regulator 2 2
MIRT710868 B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 2 2
MIRT710986 SUSD5 sushi domain containing 5 2 2
MIRT711460 RNF145 ring finger protein 145 2 2
MIRT712302 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT713609 SYTL4 synaptotagmin like 4 2 2
MIRT713789 MAK16 MAK16 homolog 2 2
MIRT715480 MYO9B myosin IXB 2 2
MIRT716328 POU5F1 POU class 5 homeobox 1 2 2
MIRT717252 TMEM246 transmembrane protein 246 2 2
MIRT718077 CLIC5 chloride intracellular channel 5 2 2
MIRT718463 EED embryonic ectoderm development 2 2
MIRT718645 NKPD1 NTPase KAP family P-loop domain containing 1 2 2
MIRT718982 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT721078 RPS9 ribosomal protein S9 2 2
MIRT721419 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT721863 CENPJ centromere protein J 2 2
MIRT722492 PNKD paroxysmal nonkinesigenic dyskinesia 2 2
MIRT723391 CALN1 calneuron 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-412 Gemcitabine approved 60750 Northern blot Mz-ChA-1 human cholangiocarcinoma cell lines 16762633 2006 down-regulated
miR-412 Progesterone approved 5994 Microarray Breast cancer 22330642 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-412 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-412 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-412-3p Verapamil 2520 NSC272366 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (RKO)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (HCT-116)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved sensitive High Anaplastic Thyroid Cancer tissue
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM47)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM43)
hsa-miR-412-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-412-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-412-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (Panc1-GR1)
hsa-miR-412-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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