pre-miRNA Information
pre-miRNA hsa-mir-412   
Genomic Coordinates chr14: 101065447 - 101065537
Synonyms MIRN412, hsa-mir-412, MIR412
Description Homo sapiens miR-412 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-412-3p
Sequence 54| ACUUCACCUGGUCCACUAGCCGU |76
Evidence Not_experimental
Experiments
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
rs61992671 18 GWAS
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs369997462 1 dbSNP
rs1439693090 7 dbSNP
rs1301668924 11 dbSNP
rs534204576 13 dbSNP
rs775386036 14 dbSNP
rs762832140 15 dbSNP
rs1203323285 16 dbSNP
rs61992671 18 dbSNP
rs1022012324 19 dbSNP
rs1207609936 20 dbSNP
rs139967426 21 dbSNP
rs539487075 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF551   
Synonyms -
Description zinc finger protein 551
Transcript NM_138347   
Expression
Putative miRNA Targets on ZNF551
3'UTR of ZNF551
(miRNA target sites are highlighted)
>ZNF551|NM_138347|3'UTR
   1 ATGTGAAGGGAATGTGCTATTTCTTTATTCAGTATAATAGCACTGGAGGAGACTGTGGTAGCCATCTTCGTAAATTTAAA
  81 CTTTGAGCACCCACAGTGGGGTATTCTTCATAAGTTTCAGGTATGTGGGAAGCTCTGAGGAGGTTCATTGTAATTTCTAA
 161 TCTGCCGAGGCCTATAGCCTGATTTATGTCACTGCCAATTTCTGAGGCTGAAGCCATTTCACATTTCACCCCTACCACCT
 241 GGCAGGTGCACACCATGTGCATGAGTCACTTCCCCACAGTGCTCAGAGAAGCAAACCTCTGTACTCTCCCATTTGCTTGG
 321 GGAAATTATTAATAGCCCAAGCATGTAGGGTCTTCATGTCTTTTCTCTGACTTTAGAGTATACACCTGACCCAGTTGTGG
 401 TCCAGAGAATCTGAGTTGTGCTGTCAGCTTTCTAAGGATTACTTTTTTAAGGAACATTGTCGGTCTCACATGATGCTTGT
 481 AATGAATTTTTCCACATTCTGATTCACCAGCCTGGAAACTGCTTGGTGCACATTGCTTTAATTTATAATGTTTTTATAAA
 561 GGTTTTAAAAAAATTTACGCACCTTTAATCTTGGGTGTTCTATTCATTGCATAGAATGACTTGTAAGCAGAATAGTGATG
 641 TCAGCATGAAGGGGTGAATAGATTTTGTGGAGATCTCAAACTTTCTGTACTCAGAAGGGACAATGTGATGGCAGAAGACA
 721 GCTCTTTGTTCTGTATTGCTCTAATTGGCCTGCTGCCCAAGGCCTCAAAGTAAAGACTGCCAGGCTTTGTGTTCCTGTAT
 801 TGTGGCCTGGTGCCATTTTTGTCAGGTCAGAGGTCACCATGAAAAGGAGGCAGTTGTGACAATCCCCAGTGCTTCTGTGA
 881 ACGTGAATTTTGTTCAGTTGTCCACAGGAGATCCACATAATTCCTAGCACTGGTGAGGGGAATCTGTTGCCCAGGTCCTG
 961 CAAAGGAGCCAGGTGCCATGGCATATAAGTCAGTGTAGACTGGTGCCATTTGTTGTCAGACTATAGGTGTGGAGGTGAAA
1041 TTACAGGTTCAACAGTAATTGGGACAGAAACTCCAGGTAAATGGGGAGTGGAGAAGACTGCAGTAAATTAGATGGAATGA
1121 CTCTTCTAAAAGTTCATCTACAAATTTTCCAGTGAATATGGTTGTGTAGGATCAGTGCATACAGAAATTCTCAGGATCTT
1201 CTGTTTACTATCGCTGAGATCATTATCAGAAAATAGTCTGGCCGGGCATGGTGTAATCCTAACACTTTGGGAGGCCAAGG
1281 CGGGCGGATTGCCTGAGCTCAGGAGTTCAAGACCAGCCTGGGCAACATGGTGAAATCCCATGTCTACTAAAATACAAAAA
1361 ATTAGCCAGGCGTGGCAGCATGCGCCTATAGTCCCAGCCACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGAAG
1441 GCGGAAGTTGCAGTGAGCTGAGATTGCACCACTGCACTCCAGCCCAGGCAACAGAGTGAGACTCCGTCTCCAAAAAAAAA
1521 AAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugCCGAUC--ACCUG--GU-CCACUUca 5'
            | | ||  |||:|  || ||||||  
Target 5' aaGACCAGCCTGGGCAACATGGTGAAat 3'
1309 - 1336 137.00 -11.70
2
miRNA  3' ugCCGAU-----CACCUGGUCCACUUca 5'
            | |||     ||||   |||||||  
Target 5' caGACTATAGGTGTGG---AGGTGAAat 3'
1017 - 1041 134.00 -13.20
3
miRNA  3' ugccGAUCACCUGGUCCACUUCa 5'
              |||  | ||: |||||:| 
Target 5' attcCTA--GCACT-GGTGAGGg 3'
920 - 939 134.00 -13.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30457798 22 COSMIC
COSN30110503 33 COSMIC
COSN30191895 50 COSMIC
COSN30463084 58 COSMIC
COSN20079391 60 COSMIC
COSN24976850 71 COSMIC
COSN30524662 92 COSMIC
COSN30168136 100 COSMIC
COSN30158751 130 COSMIC
COSN18841287 147 COSMIC
COSN23884281 244 COSMIC
COSN20093670 961 COSMIC
COSN25721196 1177 COSMIC
COSN16018317 1217 COSMIC
COSN24706877 1512 COSMIC
COSN24526842 1634 COSMIC
COSN32096332 1746 COSMIC
COSN7451065 2164 COSMIC
COSN8262691 2307 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs376368113 4 dbSNP
rs1364926252 9 dbSNP
rs915442401 11 dbSNP
rs1247243449 12 dbSNP
rs377605982 13 dbSNP
rs770372970 15 dbSNP
rs1014222162 17 dbSNP
rs776119073 19 dbSNP
rs771019235 20 dbSNP
rs1456099962 21 dbSNP
rs763506096 24 dbSNP
rs764303040 28 dbSNP
rs751624873 30 dbSNP
rs762111089 31 dbSNP
rs1343573411 33 dbSNP
rs1207673283 38 dbSNP
rs1272941310 41 dbSNP
rs767624515 45 dbSNP
rs1201268572 46 dbSNP
rs191126785 54 dbSNP
rs755515900 62 dbSNP
rs1257023059 67 dbSNP
rs1371954974 70 dbSNP
rs1039751678 71 dbSNP
rs951607613 86 dbSNP
rs982937119 89 dbSNP
rs538352676 97 dbSNP
rs910042086 102 dbSNP
rs1434910343 104 dbSNP
rs1276732939 105 dbSNP
rs781773684 110 dbSNP
rs1413750947 111 dbSNP
rs1425749511 123 dbSNP
rs1368420216 125 dbSNP
rs1437259320 140 dbSNP
rs539638082 145 dbSNP
rs1295681492 152 dbSNP
rs921664705 153 dbSNP
rs555884218 158 dbSNP
rs1209825802 160 dbSNP
rs1205677698 167 dbSNP
rs73575239 168 dbSNP
rs1449832992 175 dbSNP
rs183139800 185 dbSNP
rs1376818304 189 dbSNP
rs1310025131 193 dbSNP
rs911832434 199 dbSNP
rs565219065 206 dbSNP
rs574773969 207 dbSNP
rs34007555 212 dbSNP
rs1177978977 217 dbSNP
rs1359583032 217 dbSNP
rs1417709187 220 dbSNP
rs1003624642 223 dbSNP
rs187458300 224 dbSNP
rs1158670597 229 dbSNP
rs1441053966 232 dbSNP
rs554429613 233 dbSNP
rs1035030878 237 dbSNP
rs1449697448 240 dbSNP
rs904352224 247 dbSNP
rs1169673497 250 dbSNP
rs765401130 251 dbSNP
rs935807640 252 dbSNP
rs956874523 252 dbSNP
rs1353554686 254 dbSNP
rs1056290321 255 dbSNP
rs1350904909 260 dbSNP
rs577481401 264 dbSNP
rs1320069165 266 dbSNP
rs773423668 270 dbSNP
rs1312259176 272 dbSNP
rs1396760587 273 dbSNP
rs1014688102 274 dbSNP
rs1434480550 277 dbSNP
rs191895393 300 dbSNP
rs887390114 318 dbSNP
rs1397938857 330 dbSNP
rs1367701695 343 dbSNP
rs1298774439 348 dbSNP
rs1420981843 350 dbSNP
rs915512313 352 dbSNP
rs57289705 353 dbSNP
rs1423991419 357 dbSNP
rs1415539716 358 dbSNP
rs1017097171 375 dbSNP
rs201687894 375 dbSNP
rs963209236 378 dbSNP
rs986550169 379 dbSNP
rs1487797762 392 dbSNP
rs531265510 395 dbSNP
rs1245647908 408 dbSNP
rs1323675364 410 dbSNP
rs1276595626 411 dbSNP
rs939853871 421 dbSNP
rs3746208 444 dbSNP
rs898315954 456 dbSNP
rs150859966 462 dbSNP
rs138130243 463 dbSNP
rs527265435 464 dbSNP
rs1396187860 469 dbSNP
rs774437160 471 dbSNP
rs945983901 472 dbSNP
rs1168182621 480 dbSNP
rs977336406 484 dbSNP
rs1249315675 494 dbSNP
rs1465111567 497 dbSNP
rs1424709216 501 dbSNP
rs1196302011 502 dbSNP
rs925857913 506 dbSNP
rs905207889 508 dbSNP
rs867765987 513 dbSNP
rs1489529109 519 dbSNP
rs935846297 521 dbSNP
rs1366305426 527 dbSNP
rs183277552 533 dbSNP
rs1035078134 536 dbSNP
rs1278565054 538 dbSNP
rs1165303243 553 dbSNP
rs1415227037 557 dbSNP
rs892524823 574 dbSNP
rs1457171498 575 dbSNP
rs1157086495 577 dbSNP
rs578196384 579 dbSNP
rs564377681 580 dbSNP
rs1009586706 583 dbSNP
rs950125100 596 dbSNP
rs1200279284 604 dbSNP
rs1338867200 615 dbSNP
rs1450029025 621 dbSNP
rs1284569309 624 dbSNP
rs1328447782 632 dbSNP
rs1458348434 636 dbSNP
rs1260292380 638 dbSNP
rs1045744706 639 dbSNP
rs1226478129 640 dbSNP
rs968235950 650 dbSNP
rs1255332769 651 dbSNP
rs1329269699 653 dbSNP
rs1349966082 659 dbSNP
rs976108969 660 dbSNP
rs1445425193 662 dbSNP
rs1199319409 668 dbSNP
rs879751352 670 dbSNP
rs1394649192 671 dbSNP
rs955038588 672 dbSNP
rs1173539572 674 dbSNP
rs374587350 675 dbSNP
rs533268840 677 dbSNP
rs549963888 678 dbSNP
rs187726429 684 dbSNP
rs369362669 687 dbSNP
rs1379028336 688 dbSNP
rs1253655298 692 dbSNP
rs192808387 694 dbSNP
rs1190129819 702 dbSNP
rs1440443331 714 dbSNP
rs1004130405 715 dbSNP
rs1185766379 719 dbSNP
rs1442078473 722 dbSNP
rs986442147 749 dbSNP
rs1200852868 750 dbSNP
rs1349900755 759 dbSNP
rs759652259 767 dbSNP
rs1283854402 772 dbSNP
rs548681166 782 dbSNP
rs1353879230 790 dbSNP
rs898721164 801 dbSNP
rs997443182 804 dbSNP
rs1339511951 810 dbSNP
rs919795880 811 dbSNP
rs1414748814 819 dbSNP
rs1359152850 827 dbSNP
rs1457849718 837 dbSNP
rs771994723 838 dbSNP
rs12608564 842 dbSNP
rs1416354845 852 dbSNP
rs1334631866 858 dbSNP
rs1161542850 865 dbSNP
rs1472570692 867 dbSNP
rs1044715352 868 dbSNP
rs907098172 880 dbSNP
rs1349678743 883 dbSNP
rs1447527781 884 dbSNP
rs760463989 884 dbSNP
rs987214946 887 dbSNP
rs1407719276 888 dbSNP
rs892452273 891 dbSNP
rs1284468481 893 dbSNP
rs1290147267 897 dbSNP
rs1338988551 898 dbSNP
rs116723410 908 dbSNP
rs1231968138 909 dbSNP
rs1321614623 911 dbSNP
rs1253738317 919 dbSNP
rs1022375257 923 dbSNP
rs904021089 934 dbSNP
rs967041068 938 dbSNP
rs1167452867 941 dbSNP
rs1476056819 943 dbSNP
rs1421129752 961 dbSNP
rs1346734011 971 dbSNP
rs12608585 973 dbSNP
rs925880027 976 dbSNP
rs547409398 979 dbSNP
rs1482935954 983 dbSNP
rs991760045 986 dbSNP
rs915739558 990 dbSNP
rs950177111 996 dbSNP
rs761585078 1001 dbSNP
rs1273412370 1006 dbSNP
rs908602015 1008 dbSNP
rs987038297 1009 dbSNP
rs1420199294 1016 dbSNP
rs1198294793 1019 dbSNP
rs1375974284 1022 dbSNP
rs1315689945 1024 dbSNP
rs1015303370 1027 dbSNP
rs1479018968 1028 dbSNP
rs1173403957 1029 dbSNP
rs1364668818 1030 dbSNP
rs940040067 1040 dbSNP
rs1435837702 1044 dbSNP
rs1331809166 1048 dbSNP
rs1370120342 1050 dbSNP
rs1427598527 1073 dbSNP
rs184225573 1074 dbSNP
rs974234085 1082 dbSNP
rs1399877656 1083 dbSNP
rs898768130 1084 dbSNP
rs1386116027 1087 dbSNP
rs1410364619 1097 dbSNP
rs1298622747 1101 dbSNP
rs1421568766 1109 dbSNP
rs997098469 1113 dbSNP
rs1477666473 1116 dbSNP
rs1253011085 1125 dbSNP
rs749918897 1128 dbSNP
rs1050386060 1130 dbSNP
rs891295161 1133 dbSNP
rs1205620584 1141 dbSNP
rs1314539002 1144 dbSNP
rs928451253 1149 dbSNP
rs1296433594 1150 dbSNP
rs1219096321 1152 dbSNP
rs1349237120 1153 dbSNP
rs1339616927 1159 dbSNP
rs1008364070 1168 dbSNP
rs1018719051 1169 dbSNP
rs1052957124 1175 dbSNP
rs1277171367 1185 dbSNP
rs543053044 1189 dbSNP
rs967096365 1193 dbSNP
rs1209788426 1194 dbSNP
rs758046448 1207 dbSNP
rs1032665002 1210 dbSNP
rs189977923 1211 dbSNP
rs1044206914 1213 dbSNP
rs991420802 1214 dbSNP
rs915774522 1222 dbSNP
rs1437319075 1230 dbSNP
rs576225386 1234 dbSNP
rs971213300 1239 dbSNP
rs1049951321 1240 dbSNP
rs1389848675 1244 dbSNP
rs149574128 1245 dbSNP
rs1170300595 1248 dbSNP
rs981214684 1257 dbSNP
rs1353152655 1261 dbSNP
rs1307815085 1269 dbSNP
rs908654390 1278 dbSNP
rs940091842 1282 dbSNP
rs1015816981 1283 dbSNP
rs1291747246 1286 dbSNP
rs146269152 1287 dbSNP
rs1386903775 1293 dbSNP
rs1319297965 1301 dbSNP
rs572069020 1304 dbSNP
rs1159200665 1305 dbSNP
rs1230128775 1308 dbSNP
rs1411209547 1309 dbSNP
rs1297809036 1315 dbSNP
rs1475777905 1339 dbSNP
rs1308475553 1340 dbSNP
rs1244430120 1342 dbSNP
rs1027167351 1345 dbSNP
rs1264222138 1347 dbSNP
rs756432922 1348 dbSNP
rs1261346587 1363 dbSNP
rs969855863 1364 dbSNP
rs980244251 1371 dbSNP
rs932603251 1372 dbSNP
rs567567144 1373 dbSNP
rs1294914168 1380 dbSNP
rs1463752608 1384 dbSNP
rs1190779375 1385 dbSNP
rs891353327 1386 dbSNP
rs1423041257 1389 dbSNP
rs1163707623 1398 dbSNP
rs1008418004 1399 dbSNP
rs1042560010 1404 dbSNP
rs1191994420 1405 dbSNP
rs1477754649 1422 dbSNP
rs902964315 1426 dbSNP
rs563938033 1427 dbSNP
rs913117359 1429 dbSNP
rs945383316 1437 dbSNP
rs778029705 1443 dbSNP
rs749477637 1444 dbSNP
rs1337228627 1452 dbSNP
rs1274770349 1453 dbSNP
rs192732518 1460 dbSNP
rs1461864997 1469 dbSNP
rs1012963711 1474 dbSNP
rs925262862 1476 dbSNP
rs1296257027 1479 dbSNP
rs139366323 1489 dbSNP
rs1364809062 1493 dbSNP
rs1324640508 1503 dbSNP
rs971265957 1506 dbSNP
rs981267131 1507 dbSNP
rs1168958670 1512 dbSNP
rs1194371619 1512 dbSNP
rs1469950303 1512 dbSNP
rs547644438 1512 dbSNP
rs1436590418 1513 dbSNP
rs563605627 1518 dbSNP
rs1377923390 1522 dbSNP
rs1236631553 1523 dbSNP
rs1395872438 1530 dbSNP
rs1196493428 1533 dbSNP
rs1008367557 1536 dbSNP
rs1037302191 1545 dbSNP
rs1229435700 1548 dbSNP
rs117639138 1552 dbSNP
rs1302005873 1557 dbSNP
rs548918822 1559 dbSNP
rs1372689005 1563 dbSNP
rs1328959798 1567 dbSNP
rs568511004 1569 dbSNP
rs1300265847 1573 dbSNP
rs1464946699 1580 dbSNP
rs970118391 1587 dbSNP
rs534034509 1588 dbSNP
rs184772242 1589 dbSNP
rs1261593386 1594 dbSNP
rs959872445 1603 dbSNP
rs1178198731 1605 dbSNP
rs919970909 1633 dbSNP
rs988575185 1634 dbSNP
rs76023454 1635 dbSNP
rs1482224954 1636 dbSNP
rs985841235 1642 dbSNP
rs1279575593 1645 dbSNP
rs912840998 1648 dbSNP
rs562790745 1654 dbSNP
rs1475383413 1657 dbSNP
rs944258668 1660 dbSNP
rs535454859 1668 dbSNP
rs902681479 1669 dbSNP
rs1237792614 1671 dbSNP
rs1458368487 1673 dbSNP
rs1336011933 1675 dbSNP
rs1159185037 1676 dbSNP
rs556416623 1684 dbSNP
rs767782001 1692 dbSNP
rs775433434 1696 dbSNP
rs12981782 1705 dbSNP
rs1054220229 1710 dbSNP
rs562095202 1713 dbSNP
rs535626030 1722 dbSNP
rs1012605342 1724 dbSNP
rs1022569347 1734 dbSNP
rs1415740732 1735 dbSNP
rs944208006 1739 dbSNP
rs1183686429 1746 dbSNP
rs563951179 1746 dbSNP
rs1349160109 1749 dbSNP
rs1211431563 1752 dbSNP
rs1037223755 1756 dbSNP
rs751095535 1756 dbSNP
rs765094150 1756 dbSNP
rs931613455 1756 dbSNP
rs1491577046 1757 dbSNP
rs905529592 1761 dbSNP
rs907160317 1769 dbSNP
rs1002740250 1771 dbSNP
rs796512658 1780 dbSNP
rs1294294840 1781 dbSNP
rs1417118636 1794 dbSNP
rs1035415630 1799 dbSNP
rs1317697199 1799 dbSNP
rs1020150534 1801 dbSNP
rs34604879 1801 dbSNP
rs895545397 1801 dbSNP
rs961241572 1802 dbSNP
rs1476120592 1805 dbSNP
rs1240336731 1807 dbSNP
rs1208307777 1809 dbSNP
rs201741885 1810 dbSNP
rs201892173 1810 dbSNP
rs189077634 1811 dbSNP
rs1211364054 1816 dbSNP
rs572066475 1820 dbSNP
rs1204103266 1830 dbSNP
rs985505380 1843 dbSNP
rs1339045582 1844 dbSNP
rs1270193190 1850 dbSNP
rs1431550570 1871 dbSNP
rs527445384 1880 dbSNP
rs756964974 1884 dbSNP
rs1321679618 1885 dbSNP
rs1440400875 1895 dbSNP
rs540762264 1896 dbSNP
rs1462858405 1898 dbSNP
rs1417292182 1900 dbSNP
rs978342692 1917 dbSNP
rs1423832522 1925 dbSNP
rs931435336 1926 dbSNP
rs1048649903 1931 dbSNP
rs924155377 1932 dbSNP
rs1467734687 1933 dbSNP
rs1253281630 1935 dbSNP
rs936868245 1936 dbSNP
rs1430903752 1940 dbSNP
rs1306177145 1944 dbSNP
rs776272311 1953 dbSNP
rs937027467 1956 dbSNP
rs1054339617 1963 dbSNP
rs1273106094 1987 dbSNP
rs1233729460 1993 dbSNP
rs1056753796 1998 dbSNP
rs547913197 2007 dbSNP
rs1307803549 2010 dbSNP
rs895478090 2011 dbSNP
rs892912048 2015 dbSNP
rs1444961983 2019 dbSNP
rs1410415460 2035 dbSNP
rs1421626846 2041 dbSNP
rs564256705 2048 dbSNP
rs1020413402 2065 dbSNP
rs181578891 2066 dbSNP
rs1395292682 2069 dbSNP
rs1044076225 2079 dbSNP
rs1479454193 2084 dbSNP
rs1175003339 2085 dbSNP
rs1194089494 2085 dbSNP
rs1205692853 2085 dbSNP
rs1375446631 2085 dbSNP
rs141386835 2085 dbSNP
rs1416894001 2085 dbSNP
rs1434038647 2085 dbSNP
rs200639437 2085 dbSNP
rs201678439 2085 dbSNP
rs67512913 2085 dbSNP
rs757489210 2085 dbSNP
rs906878915 2085 dbSNP
rs1178113701 2087 dbSNP
rs1406861635 2087 dbSNP
rs1217477906 2092 dbSNP
rs1303691769 2093 dbSNP
rs1256012580 2095 dbSNP
rs1210725165 2097 dbSNP
rs1002457399 2104 dbSNP
rs1028927286 2105 dbSNP
rs1036921688 2105 dbSNP
rs1224114782 2105 dbSNP
rs543478854 2107 dbSNP
rs1414044212 2109 dbSNP
rs1008809074 2110 dbSNP
rs142983978 2112 dbSNP
rs1314158640 2114 dbSNP
rs200300223 2114 dbSNP
rs995374494 2115 dbSNP
rs1027219761 2116 dbSNP
rs1246017108 2117 dbSNP
rs1187718554 2118 dbSNP
rs954189208 2121 dbSNP
rs1184849720 2122 dbSNP
rs1260278844 2122 dbSNP
rs1192371055 2123 dbSNP
rs1006977121 2129 dbSNP
rs369807580 2130 dbSNP
rs1168402206 2133 dbSNP
rs1019671137 2135 dbSNP
rs373495526 2136 dbSNP
rs927448341 2136 dbSNP
rs984672222 2136 dbSNP
rs1335362977 2137 dbSNP
rs867484003 2138 dbSNP
rs563538506 2142 dbSNP
rs1330149169 2144 dbSNP
rs201386286 2145 dbSNP
rs1288947865 2149 dbSNP
rs1436777769 2150 dbSNP
rs1164620117 2156 dbSNP
rs67613804 2156 dbSNP
rs1462354089 2158 dbSNP
rs1168878826 2160 dbSNP
rs1420634794 2160 dbSNP
rs1057312575 2162 dbSNP
rs12973724 2162 dbSNP
rs916915190 2162 dbSNP
rs958515908 2166 dbSNP
rs139750392 2170 dbSNP
rs745901201 2170 dbSNP
rs1267009034 2172 dbSNP
rs12974400 2172 dbSNP
rs66493149 2172 dbSNP
rs754227019 2172 dbSNP
rs771221447 2172 dbSNP
rs780570236 2172 dbSNP
rs916729867 2174 dbSNP
rs948538692 2176 dbSNP
rs1295618017 2178 dbSNP
rs1230028796 2179 dbSNP
rs1368329919 2180 dbSNP
rs1324869363 2185 dbSNP
rs1441194085 2187 dbSNP
rs1372058007 2191 dbSNP
rs1050713189 2206 dbSNP
rs1434622341 2210 dbSNP
rs533576317 2213 dbSNP
rs1341250226 2219 dbSNP
rs759745280 2229 dbSNP
rs746932374 2232 dbSNP
rs1214876195 2236 dbSNP
rs1170534895 2239 dbSNP
rs768429953 2250 dbSNP
rs750155972 2252 dbSNP
rs1194444389 2253 dbSNP
rs1008859972 2256 dbSNP
rs1269156051 2257 dbSNP
rs144151619 2258 dbSNP
rs938367787 2259 dbSNP
rs1251885777 2261 dbSNP
rs1206664178 2266 dbSNP
rs80081984 2267 dbSNP
rs1302063769 2268 dbSNP
rs559289552 2273 dbSNP
rs1025746628 2280 dbSNP
rs186595142 2288 dbSNP
rs547570887 2289 dbSNP
rs1249428081 2307 dbSNP
rs1391223739 2308 dbSNP
rs1048263021 2309 dbSNP
rs1168835417 2310 dbSNP
rs1310454167 2320 dbSNP
rs762492602 2321 dbSNP
rs1006694439 2327 dbSNP
rs1413784673 2329 dbSNP
rs1374857219 2339 dbSNP
rs1174373703 2344 dbSNP
rs1404067891 2353 dbSNP
rs1479101487 2357 dbSNP
rs1167256157 2358 dbSNP
rs200431979 2360 dbSNP
rs1019723851 2361 dbSNP
rs149813887 2361 dbSNP
rs71188045 2361 dbSNP
rs779832553 2361 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000282296.5 | 3UTR | AUGAGGAGAGAGAGAGAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
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138 hsa-miR-412-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT005780 ACVR1C activin A receptor type 1C 1 1
MIRT062013 YOD1 YOD1 deubiquitinase 2 2
MIRT345112 ATXN7L3 ataxin 7 like 3 2 2
MIRT383735 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 2
MIRT396956 CELF1 CUGBP Elav-like family member 1 2 2
MIRT439280 XIAP X-linked inhibitor of apoptosis 1 1
MIRT439313 VAT1 vesicle amine transport 1 1 1
MIRT439375 TUBA1A tubulin alpha 1a 1 1
MIRT439418 TMOD1 tropomodulin 1 1 1
MIRT439503 SURF4 surfeit 4 1 1
MIRT439563 SON SON DNA binding protein 1 1
MIRT439598 SLC3A2 solute carrier family 3 member 2 1 1
MIRT439670 SETD1B SET domain containing 1B 1 1
MIRT439767 RMND5A required for meiotic nuclear division 5 homolog A 1 1
MIRT439922 PPL periplakin 1 1
MIRT439947 PLEKHA6 pleckstrin homology domain containing A6 1 1
MIRT439952 PLCB4 phospholipase C beta 4 1 1
MIRT439961 PKD1 polycystin 1, transient receptor potential channel interacting 1 1
MIRT440005 PEG3 paternally expressed 3 1 1
MIRT440061 OSBPL8 oxysterol binding protein like 8 1 1
MIRT440166 MYH14 myosin heavy chain 14 1 1
MIRT440276 MAPK8IP1 mitogen-activated protein kinase 8 interacting protein 1 1 1
MIRT440437 IPO13 importin 13 1 1
MIRT440441 INTS3 integrator complex subunit 3 1 1
MIRT440448 INS insulin 1 1
MIRT440461 IGF2R insulin like growth factor 2 receptor 1 1
MIRT440472 IARS isoleucyl-tRNA synthetase 1 1
MIRT440530 GUCY1A3 guanylate cyclase 1 soluble subunit alpha 1 1
MIRT440542 GOLGA2 golgin A2 1 1
MIRT440569 GIGYF1 GRB10 interacting GYF protein 1 1 1
MIRT440608 FTSJD2 cap methyltransferase 1 1 1
MIRT440750 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 1 1
MIRT440781 DOT1L DOT1 like histone lysine methyltransferase 1 1
MIRT440804 DNAJA4 DnaJ heat shock protein family (Hsp40) member A4 1 1
MIRT440867 CSDE1 cold shock domain containing E1 1 1
MIRT440890 CPEB4 cytoplasmic polyadenylation element binding protein 4 1 1
MIRT440917 COL1A1 collagen type I alpha 1 chain 1 1
MIRT440967 CDH22 cadherin 22 1 1
MIRT440968 CDH2 cadherin 2 1 1
MIRT441024 CALR calreticulin 1 1
MIRT441278 ACTB actin beta 1 1
MIRT448421 TNFAIP3 TNF alpha induced protein 3 2 2
MIRT462833 BCL3 B-cell CLL/lymphoma 3 2 2
MIRT465062 TSR1 TSR1, ribosome maturation factor 2 2
MIRT476050 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT485318 MZT1 mitotic spindle organizing protein 1 2 4
MIRT493584 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 6
MIRT494567 BAK1 BCL2 antagonist/killer 1 2 2
MIRT497393 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT503250 ZNF257 zinc finger protein 257 2 10
MIRT503656 ZNF138 zinc finger protein 138 2 10
MIRT505882 RNF219 ring finger protein 219 2 2
MIRT507525 DSTN destrin, actin depolymerizing factor 2 4
MIRT510663 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT514682 ZNF701 zinc finger protein 701 2 4
MIRT515370 ZNF208 zinc finger protein 208 2 6
MIRT525237 KCNJ12 potassium voltage-gated channel subfamily J member 12 2 2
MIRT527963 MTAP methylthioadenosine phosphorylase 2 2
MIRT528482 STAMBPL1 STAM binding protein like 1 2 2
MIRT529909 C1orf64 steroid receptor associated and regulated protein 2 4
MIRT531558 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT532234 KLF2 Kruppel like factor 2 2 4
MIRT532480 HOXA13 homeobox A13 2 2
MIRT535544 P2RY2 purinergic receptor P2Y2 2 2
MIRT547311 NR1D2 nuclear receptor subfamily 1 group D member 2 2 2
MIRT551795 ZNF117 zinc finger protein 117 2 4
MIRT554939 RAP1A RAP1A, member of RAS oncogene family 2 2
MIRT558171 EIF5A2 eukaryotic translation initiation factor 5A2 2 2
MIRT568771 LY6K lymphocyte antigen 6 family member K 2 2
MIRT570766 ZNF99 zinc finger protein 99 2 2
MIRT572405 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT573396 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT610403 RXRB retinoid X receptor beta 2 2
MIRT610886 SCN8A sodium voltage-gated channel alpha subunit 8 2 2
MIRT611197 TMEM105 transmembrane protein 105 2 2
MIRT611244 ZNF550 zinc finger protein 550 2 2
MIRT615669 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 4
MIRT617974 DOCK4 dedicator of cytokinesis 4 2 2
MIRT619150 ZNF326 zinc finger protein 326 2 2
MIRT619608 MKKS McKusick-Kaufman syndrome 2 2
MIRT621053 DGKD diacylglycerol kinase delta 2 2
MIRT623665 HRK harakiri, BCL2 interacting protein 2 2
MIRT624883 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT624939 MARCH2 membrane associated ring-CH-type finger 2 2 2
MIRT634198 TMOD2 tropomodulin 2 2 4
MIRT636727 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT637741 POLR3K RNA polymerase III subunit K 2 2
MIRT638002 ZC3H13 zinc finger CCCH-type containing 13 2 2
MIRT640395 ZNF785 zinc finger protein 785 2 2
MIRT640505 ANTXR1 anthrax toxin receptor 1 2 2
MIRT641293 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT641863 STOML1 stomatin like 1 2 2
MIRT642600 C14orf180 chromosome 14 open reading frame 180 2 2
MIRT642895 CASP1 caspase 1 2 2
MIRT643967 FHL2 four and a half LIM domains 2 2 4
MIRT645237 KCTD12 potassium channel tetramerization domain containing 12 2 2
MIRT646621 CENPL centromere protein L 2 2
MIRT648620 CYB561A3 cytochrome b561 family member A3 2 2
MIRT648908 ZNF551 zinc finger protein 551 2 2
MIRT649439 HIBADH 3-hydroxyisobutyrate dehydrogenase 2 2
MIRT650637 LTF lactotransferrin 2 2
MIRT650971 STARD3NL STARD3 N-terminal like 2 2
MIRT651067 ZNF518B zinc finger protein 518B 2 4
MIRT652384 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT653958 SEPN1 selenoprotein N 2 2
MIRT656885 KIF1C kinesin family member 1C 2 2
MIRT657965 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT658080 FOXR2 forkhead box R2 2 2
MIRT662570 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT663089 METTL10 EEF1A lysine methyltransferase 2 2 2
MIRT683705 ZNF195 zinc finger protein 195 2 2
MIRT683835 ZNF682 zinc finger protein 682 2 2
MIRT706811 APOL4 apolipoprotein L4 2 2
MIRT707575 DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 2 2
MIRT708606 ZNF260 zinc finger protein 260 2 2
MIRT708859 TMSB4X thymosin beta 4, X-linked 2 2
MIRT709861 PDIK1L PDLIM1 interacting kinase 1 like 2 2
MIRT709987 RBM41 RNA binding motif protein 41 2 2
MIRT710098 KPNA5 karyopherin subunit alpha 5 2 2
MIRT710211 ENAH ENAH, actin regulator 2 2
MIRT710868 B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 2 2
MIRT710986 SUSD5 sushi domain containing 5 2 2
MIRT711460 RNF145 ring finger protein 145 2 2
MIRT712302 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT713609 SYTL4 synaptotagmin like 4 2 2
MIRT713789 MAK16 MAK16 homolog 2 2
MIRT715480 MYO9B myosin IXB 2 2
MIRT716328 POU5F1 POU class 5 homeobox 1 2 2
MIRT717252 TMEM246 transmembrane protein 246 2 2
MIRT718077 CLIC5 chloride intracellular channel 5 2 2
MIRT718463 EED embryonic ectoderm development 2 2
MIRT718645 NKPD1 NTPase KAP family P-loop domain containing 1 2 2
MIRT718982 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT721078 RPS9 ribosomal protein S9 2 2
MIRT721419 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT721863 CENPJ centromere protein J 2 2
MIRT722492 PNKD paroxysmal nonkinesigenic dyskinesia 2 2
MIRT723391 CALN1 calneuron 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-412 Gemcitabine approved 60750 Northern blot Mz-ChA-1 human cholangiocarcinoma cell lines 16762633 2006 down-regulated
miR-412 Progesterone approved 5994 Microarray Breast cancer 22330642 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-412 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-412 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-412-3p Verapamil 2520 NSC272366 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (RKO)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (HCT-116)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved sensitive High Anaplastic Thyroid Cancer tissue
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM47)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM43)
hsa-miR-412-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-412-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-412-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (Panc1-GR1)
hsa-miR-412-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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