pre-miRNA Information
pre-miRNA hsa-mir-6787   
Genomic Coordinates chr17: 82236668 - 82236728
Description Homo sapiens miR-6787 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6787-5p
Sequence 6| UGGCGGGGGUAGAGCUGGCUGC |27
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs778888046 4 dbSNP
rs772018061 5 dbSNP
rs760886644 6 dbSNP
rs776925052 7 dbSNP
rs760060985 8 dbSNP
rs1432528063 9 dbSNP
rs778772390 10 dbSNP
rs924024166 11 dbSNP
rs201523090 13 dbSNP
rs1451075810 17 dbSNP
rs1378844609 18 dbSNP
Putative Targets

Gene Information
Gene Symbol HEXA   
Synonyms TSD
Description hexosaminidase subunit alpha
Transcript NM_000520   
Expression
Putative miRNA Targets on HEXA
3'UTR of HEXA
(miRNA target sites are highlighted)
>HEXA|NM_000520|3'UTR
   1 GCCCCAGGCACCGAGGAGGGTGCTGGCTGTAGGTGAATGGTAGTGGAGCCAGGCTTCCACTGCATCCTGGCCAGGGGACG
  81 GAGCCCCTTGCCTTCGTGCCCCTTGCCTGCGTGCCCCTGTGCTTGGAGAGAAAGGGGCCGGTGCTGGCGCTCGCATTCAA
 161 TAAAGAGTAATGTGGCATTTTTCTATAATAAACATGGATTACCTGTGTTTAAAAAAAAAAGTGTGAATGGCGTTAGGGTA
 241 AGGGCACAGCCAGGCTGGAGTCAGTGTCTGCCCCTGAGGTCTTTTAAGTTGAGGGCTGGGAATGAAACCTATAGCCTTTG
 321 TGCTGTTCTGCCTTGCCTGTGAGCTATGTCACTCCCCTCCCACTCCTGACCATATTCCAGACACCTGCCCTAATCCTCAG
 401 CCTGCTCACTTCACTTCTGCATTATATCTCCAAGGCGTTGGTATATGGAAAAAGATGTAGGGGCTTGGAGGTGTTCTGGA
 481 CAGTGGGGAGGGCTCCAGACCCAACCTGGTCACAGAAGAGCCTCTCCCCCATGCATACTCATCCACCTCCCTCCCCTAGA
 561 GCTATTCTCCTTTGGGTTTCTTGCTGCTTCAATTTTATACAACCATTATTTAAATATTATTAAACACATATTGTTCTCTA
 641 GGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cgUCGGUCGAGAUGGGGGCGGu 5'
            |||:|  ||  :|||| || 
Target 5' tgAGCTATGTCACTCCCCTCCc 3'
340 - 361 128.00 -17.50
2
miRNA  3' cguCGGUCGAGAUGGGGGCGGu 5'
             ||: |:|||: ||::||| 
Target 5' tgtGCT-GTTCTG-CCTTGCCt 3'
319 - 338 125.00 -18.10
3
miRNA  3' cgUCGGUCG-AGAUGGGGGCggu 5'
            ||:|||: |||:||||:|   
Target 5' ggAGTCAGTGTCTGCCCCTGagg 3'
257 - 279 124.00 -27.02
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
317040 12 ClinVar
317039 76 ClinVar
317038 200 ClinVar
317037 355 ClinVar
317036 436 ClinVar
317035 515 ClinVar
317034 575 ClinVar
317033 589 ClinVar
317032 630 ClinVar
COSN30457542 2 COSMIC
COSN30513324 6 COSMIC
COSN30760582 35 COSMIC
COSN26537937 43 COSMIC
COSN18738866 75 COSMIC
COSN30503192 80 COSMIC
COSN31614385 80 COSMIC
COSN31614380 81 COSMIC
COSN30486731 102 COSMIC
COSN30492718 110 COSMIC
COSN17010943 140 COSMIC
COSN30540477 147 COSMIC
COSN31600832 148 COSMIC
COSN30156893 153 COSMIC
COSN28865592 211 COSMIC
COSN30118985 231 COSMIC
COSN5174591 258 COSMIC
COSN6279475 274 COSMIC
COSN8477517 457 COSMIC
COSN28020125 685 COSMIC
COSN22148803 749 COSMIC
COSN8389997 846 COSMIC
COSN25797302 848 COSMIC
COSN15928433 933 COSMIC
COSN16943424 996 COSMIC
COSN22047495 1103 COSMIC
COSN26430679 1136 COSMIC
COSN23511508 1223 COSMIC
COSN26151789 2008 COSMIC
COSN7248020 2076 COSMIC
COSN32149338 2157 COSMIC
COSN32149337 2749 COSMIC
COSN7248019 2815 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs780359821 1 dbSNP
rs532797279 12 dbSNP
rs750636737 13 dbSNP
rs1417136814 14 dbSNP
rs781430079 17 dbSNP
rs757357289 18 dbSNP
rs751574516 19 dbSNP
rs999012777 21 dbSNP
rs763935887 29 dbSNP
rs1171320931 31 dbSNP
rs1402204865 32 dbSNP
rs1382236507 37 dbSNP
rs762847297 40 dbSNP
rs752413673 42 dbSNP
rs764962743 45 dbSNP
rs759216964 49 dbSNP
rs1230870560 54 dbSNP
rs1030326678 59 dbSNP
rs1351324583 64 dbSNP
rs1217368922 66 dbSNP
rs997194852 70 dbSNP
rs1487370082 71 dbSNP
rs1193184855 72 dbSNP
rs558918292 76 dbSNP
rs1435276042 77 dbSNP
rs181233715 79 dbSNP
rs751432099 80 dbSNP
rs866985944 80 dbSNP
rs531838039 81 dbSNP
rs1251937417 84 dbSNP
rs759741558 94 dbSNP
rs887509818 95 dbSNP
rs1054496232 96 dbSNP
rs1305973780 99 dbSNP
rs934899848 107 dbSNP
rs1418617610 110 dbSNP
rs561029456 111 dbSNP
rs1233675715 115 dbSNP
rs929133285 122 dbSNP
rs1300357105 123 dbSNP
rs1336236966 128 dbSNP
rs1242183388 131 dbSNP
rs1357081520 132 dbSNP
rs775801706 133 dbSNP
rs1291384485 137 dbSNP
rs1283854604 138 dbSNP
rs375308096 139 dbSNP
rs950232590 140 dbSNP
rs916097934 149 dbSNP
rs868362186 153 dbSNP
rs527803610 156 dbSNP
rs1189798195 159 dbSNP
rs1267148624 166 dbSNP
rs1440741757 167 dbSNP
rs751716928 174 dbSNP
rs1054432 183 dbSNP
rs34300017 183 dbSNP
rs1379067336 193 dbSNP
rs886051461 200 dbSNP
rs1438538509 211 dbSNP
rs1164877541 218 dbSNP
rs1260428644 221 dbSNP
rs1456090078 221 dbSNP
rs563352066 221 dbSNP
rs920253133 231 dbSNP
rs1400730840 232 dbSNP
rs1448792812 236 dbSNP
rs1306983486 237 dbSNP
rs1376071872 247 dbSNP
rs766460302 248 dbSNP
rs1313560925 250 dbSNP
rs1323690171 252 dbSNP
rs1219614501 254 dbSNP
rs763246017 268 dbSNP
rs560068788 269 dbSNP
rs1458487136 281 dbSNP
rs1019249372 286 dbSNP
rs1200993086 286 dbSNP
rs1423743046 288 dbSNP
rs545085202 293 dbSNP
rs1251412105 307 dbSNP
rs1415288026 309 dbSNP
rs987425297 311 dbSNP
rs139968433 318 dbSNP
rs957471664 323 dbSNP
rs1033088636 327 dbSNP
rs1028855564 332 dbSNP
rs1399396660 338 dbSNP
rs1448710428 347 dbSNP
rs967502009 348 dbSNP
rs188399769 355 dbSNP
rs998816698 357 dbSNP
rs965759418 359 dbSNP
rs184059814 367 dbSNP
rs1336734955 369 dbSNP
rs1271004196 372 dbSNP
rs1256592162 373 dbSNP
rs768562754 375 dbSNP
rs1211408464 377 dbSNP
rs760592453 380 dbSNP
rs1481986329 391 dbSNP
rs1033099973 396 dbSNP
rs573845046 400 dbSNP
rs775453371 403 dbSNP
rs1046379119 406 dbSNP
rs1221609766 412 dbSNP
rs1371924445 419 dbSNP
rs555620598 424 dbSNP
rs112626309 436 dbSNP
rs560253606 437 dbSNP
rs930392742 440 dbSNP
rs920305614 441 dbSNP
rs1324292056 445 dbSNP
rs1312372245 450 dbSNP
rs1036084404 455 dbSNP
rs1364882211 456 dbSNP
rs940337374 465 dbSNP
rs1045661428 488 dbSNP
rs1220242345 507 dbSNP
rs911586170 514 dbSNP
rs3087652 515 dbSNP
rs1469989127 520 dbSNP
rs1209470931 524 dbSNP
rs1286149410 528 dbSNP
rs1191032470 531 dbSNP
rs1262100648 531 dbSNP
rs1489008514 531 dbSNP
rs778510381 538 dbSNP
rs1192713806 539 dbSNP
rs1422908057 540 dbSNP
rs60288568 549 dbSNP
rs1486050685 557 dbSNP
rs1361216264 558 dbSNP
rs1421653980 561 dbSNP
rs935987029 564 dbSNP
rs770433545 569 dbSNP
rs989275703 572 dbSNP
rs926032419 574 dbSNP
rs76075374 575 dbSNP
rs1234162868 584 dbSNP
rs11629508 589 dbSNP
rs1355216078 594 dbSNP
rs1213913466 605 dbSNP
rs550241078 610 dbSNP
rs1283042155 614 dbSNP
rs1368354107 615 dbSNP
rs1223441758 621 dbSNP
rs922739871 625 dbSNP
rs1477600918 628 dbSNP
rs35949555 630 dbSNP
rs747982224 631 dbSNP
rs1441549748 632 dbSNP
rs1156944579 638 dbSNP
rs1386064197 639 dbSNP
rs1406207183 655 dbSNP
rs868084037 660 dbSNP
rs1325824802 662 dbSNP
rs1014911890 665 dbSNP
rs1291191906 673 dbSNP
rs1018519280 691 dbSNP
rs1310631782 698 dbSNP
rs1379774735 700 dbSNP
rs894765619 702 dbSNP
rs1007219629 703 dbSNP
rs1056452998 718 dbSNP
rs567493498 721 dbSNP
rs1287365020 722 dbSNP
rs1467861160 724 dbSNP
rs1027365460 729 dbSNP
rs1174324794 737 dbSNP
rs899358769 740 dbSNP
rs1455598345 745 dbSNP
rs1456402872 747 dbSNP
rs551474655 755 dbSNP
rs1363274137 760 dbSNP
rs527740652 767 dbSNP
rs940473993 768 dbSNP
rs368462545 772 dbSNP
rs1461195086 774 dbSNP
rs2959905 775 dbSNP
rs1051480964 777 dbSNP
rs931644882 782 dbSNP
rs921839562 784 dbSNP
rs1445169951 787 dbSNP
rs1487916725 793 dbSNP
rs989413081 813 dbSNP
rs957831850 820 dbSNP
rs894424143 823 dbSNP
rs551752169 832 dbSNP
rs1294870593 838 dbSNP
rs1281997370 840 dbSNP
rs923791836 841 dbSNP
rs533200974 846 dbSNP
rs1227667476 847 dbSNP
rs11072359 848 dbSNP
rs946146877 848 dbSNP
rs1255604120 850 dbSNP
rs1327426274 850 dbSNP
rs1443071386 850 dbSNP
rs558207962 857 dbSNP
rs977357972 857 dbSNP
rs543331645 863 dbSNP
rs1024724415 864 dbSNP
rs1014215828 869 dbSNP
rs751531812 871 dbSNP
rs1403539649 880 dbSNP
rs1398758364 884 dbSNP
rs1397207396 888 dbSNP
rs958966627 894 dbSNP
rs1034540176 897 dbSNP
rs995073822 899 dbSNP
rs1313949564 901 dbSNP
rs899327616 902 dbSNP
rs1338131108 907 dbSNP
rs1226510509 908 dbSNP
rs1256450764 909 dbSNP
rs1373687658 910 dbSNP
rs1027251493 912 dbSNP
rs1454836277 917 dbSNP
rs1278327509 921 dbSNP
rs1172254618 924 dbSNP
rs1015081324 933 dbSNP
rs971684766 934 dbSNP
rs1194637031 939 dbSNP
rs1462684926 940 dbSNP
rs1005038911 955 dbSNP
rs1265694532 960 dbSNP
rs1374644092 963 dbSNP
rs13380343 964 dbSNP
rs1051960380 970 dbSNP
rs931640942 975 dbSNP
rs1258171730 979 dbSNP
rs1189915440 983 dbSNP
rs561185299 984 dbSNP
rs1254827633 988 dbSNP
rs541002105 994 dbSNP
rs776409914 995 dbSNP
rs1053682899 996 dbSNP
rs936600187 999 dbSNP
rs923759469 1000 dbSNP
rs1332720156 1001 dbSNP
rs977958179 1006 dbSNP
rs1302649691 1010 dbSNP
rs894278029 1014 dbSNP
rs1217436525 1019 dbSNP
rs1034280924 1020 dbSNP
rs1288351967 1020 dbSNP
rs1204877568 1023 dbSNP
rs1268456777 1024 dbSNP
rs949243374 1028 dbSNP
rs1294493885 1029 dbSNP
rs1417129333 1033 dbSNP
rs917305687 1037 dbSNP
rs572073702 1039 dbSNP
rs958715648 1040 dbSNP
rs1343027432 1042 dbSNP
rs1293796252 1045 dbSNP
rs1398917620 1047 dbSNP
rs1168746855 1049 dbSNP
rs1392597735 1051 dbSNP
rs540470521 1052 dbSNP
rs1034342083 1053 dbSNP
rs1464925268 1056 dbSNP
rs572970683 1059 dbSNP
rs963636317 1060 dbSNP
rs942869956 1063 dbSNP
rs1266321130 1065 dbSNP
rs1236446095 1068 dbSNP
rs1045001984 1069 dbSNP
rs1181921010 1071 dbSNP
rs1015131741 1073 dbSNP
rs7180191 1074 dbSNP
rs911358899 1074 dbSNP
rs890630646 1080 dbSNP
rs1030055599 1081 dbSNP
rs931587909 1083 dbSNP
rs1197599728 1084 dbSNP
rs918825082 1085 dbSNP
rs996355365 1086 dbSNP
rs1235739119 1089 dbSNP
rs1448861146 1090 dbSNP
rs1296431631 1092 dbSNP
rs1371258369 1096 dbSNP
rs768642015 1097 dbSNP
rs1390962036 1098 dbSNP
rs961698479 1110 dbSNP
rs1284058565 1112 dbSNP
rs1323746905 1115 dbSNP
rs1231793954 1118 dbSNP
rs1272982673 1120 dbSNP
rs1319091672 1124 dbSNP
rs1239903378 1127 dbSNP
rs900157600 1128 dbSNP
rs1479985490 1129 dbSNP
rs539402366 1130 dbSNP
rs1257771844 1131 dbSNP
rs936571817 1133 dbSNP
rs902393234 1134 dbSNP
rs1467042226 1137 dbSNP
rs1042336687 1138 dbSNP
rs949219103 1139 dbSNP
rs200495098 1141 dbSNP
rs1461496721 1143 dbSNP
rs376825996 1148 dbSNP
rs992913657 1149 dbSNP
rs1357567464 1154 dbSNP
rs1413133514 1160 dbSNP
rs937455882 1171 dbSNP
rs144343769 1174 dbSNP
rs904475754 1175 dbSNP
rs973337228 1176 dbSNP
rs963354505 1180 dbSNP
rs1015099173 1186 dbSNP
rs1020209899 1188 dbSNP
rs375440439 1211 dbSNP
rs538103580 1212 dbSNP
rs1186764950 1215 dbSNP
rs984125212 1220 dbSNP
rs954884997 1227 dbSNP
rs1263537108 1236 dbSNP
rs1478642650 1241 dbSNP
rs1412981096 1248 dbSNP
rs1418645423 1250 dbSNP
rs1159033602 1253 dbSNP
rs1178196330 1262 dbSNP
rs1030948204 1263 dbSNP
rs942774106 1265 dbSNP
rs532912537 1267 dbSNP
rs1177697010 1268 dbSNP
rs964497403 1269 dbSNP
rs1048571492 1275 dbSNP
rs1032098384 1276 dbSNP
rs1000500998 1279 dbSNP
rs902195385 1295 dbSNP
rs567629396 1302 dbSNP
rs931480116 1324 dbSNP
rs1042284814 1329 dbSNP
rs918843285 1330 dbSNP
rs1209534371 1331 dbSNP
rs972978236 1332 dbSNP
rs1013949802 1335 dbSNP
rs896312352 1338 dbSNP
rs1241275243 1340 dbSNP
rs1055406293 1341 dbSNP
rs937847374 1343 dbSNP
rs1450197703 1345 dbSNP
rs1289824297 1349 dbSNP
rs1192841117 1351 dbSNP
rs1393270276 1354 dbSNP
rs1206212571 1356 dbSNP
rs1452591363 1359 dbSNP
rs992885360 1373 dbSNP
rs958473911 1382 dbSNP
rs549156889 1383 dbSNP
rs1037761185 1394 dbSNP
rs1307168274 1397 dbSNP
rs978629229 1401 dbSNP
rs1239764864 1402 dbSNP
rs968499439 1403 dbSNP
rs1305815156 1404 dbSNP
rs1369448815 1405 dbSNP
rs1434067337 1413 dbSNP
rs1232864949 1414 dbSNP
rs1309395297 1416 dbSNP
rs942009781 1434 dbSNP
rs1352268963 1435 dbSNP
rs1221697953 1437 dbSNP
rs1283196722 1438 dbSNP
rs1020626162 1439 dbSNP
rs13379855 1445 dbSNP
rs1468000600 1455 dbSNP
rs1402372578 1459 dbSNP
rs1261229360 1463 dbSNP
rs1358141089 1468 dbSNP
rs149628906 1469 dbSNP
rs955166994 1471 dbSNP
rs75605880 1472 dbSNP
rs1019634730 1474 dbSNP
rs1392871321 1475 dbSNP
rs1007289196 1476 dbSNP
rs1454283829 1479 dbSNP
rs545129869 1480 dbSNP
rs1048426289 1482 dbSNP
rs564319838 1489 dbSNP
rs1278527011 1490 dbSNP
rs1356636789 1503 dbSNP
rs1189054063 1512 dbSNP
rs750715248 1517 dbSNP
rs1333951361 1519 dbSNP
rs1199176593 1525 dbSNP
rs1246455337 1526 dbSNP
rs1439567702 1528 dbSNP
rs897301414 1529 dbSNP
rs1232467148 1531 dbSNP
rs964883170 1531 dbSNP
rs2912216 1532 dbSNP
rs1416117332 1535 dbSNP
rs1461305199 1536 dbSNP
rs1172010110 1540 dbSNP
rs1399270004 1543 dbSNP
rs138503361 1544 dbSNP
rs1327636232 1545 dbSNP
rs1215991197 1546 dbSNP
rs569107992 1548 dbSNP
rs1021074075 1549 dbSNP
rs1263736463 1551 dbSNP
rs1354575752 1552 dbSNP
rs1013500402 1555 dbSNP
rs551001001 1556 dbSNP
rs757945425 1559 dbSNP
rs556750180 1578 dbSNP
rs1055056873 1579 dbSNP
rs1001961889 1584 dbSNP
rs1272338943 1588 dbSNP
rs1486069141 1595 dbSNP
rs1213278112 1612 dbSNP
rs1255761092 1616 dbSNP
rs760502215 1618 dbSNP
rs1270540655 1624 dbSNP
rs936988974 1629 dbSNP
rs1474693297 1634 dbSNP
rs1037729842 1639 dbSNP
rs147498731 1649 dbSNP
rs1436114461 1650 dbSNP
rs745345005 1651 dbSNP
rs1374486946 1663 dbSNP
rs1400330392 1666 dbSNP
rs1297463578 1667 dbSNP
rs968550261 1669 dbSNP
rs1376722681 1695 dbSNP
rs1297496531 1698 dbSNP
rs913041332 1719 dbSNP
rs74350368 1720 dbSNP
rs965352075 1729 dbSNP
rs1278394850 1738 dbSNP
rs907863640 1740 dbSNP
rs1485482950 1745 dbSNP
rs1205983435 1748 dbSNP
rs1048232784 1749 dbSNP
rs191131608 1758 dbSNP
rs923485222 1767 dbSNP
rs1193094423 1776 dbSNP
rs1396215341 1778 dbSNP
rs528327551 1789 dbSNP
rs374110065 1799 dbSNP
rs77054779 1805 dbSNP
rs925466229 1806 dbSNP
rs545553247 1808 dbSNP
rs1290317410 1812 dbSNP
rs897216005 1821 dbSNP
rs1381508238 1832 dbSNP
rs1261692182 1837 dbSNP
rs1037232714 1839 dbSNP
rs1014165358 1861 dbSNP
rs1236529587 1864 dbSNP
rs1301295368 1867 dbSNP
rs896775203 1871 dbSNP
rs1240008087 1882 dbSNP
rs116249924 1886 dbSNP
rs936996945 1893 dbSNP
rs1204929739 1898 dbSNP
rs1254120164 1900 dbSNP
rs926915761 1907 dbSNP
rs1208354834 1918 dbSNP
rs556643110 1924 dbSNP
rs1192351591 1930 dbSNP
rs1251810989 1933 dbSNP
rs1419215837 1937 dbSNP
rs1160837294 1938 dbSNP
rs1020704841 1941 dbSNP
rs992199300 1942 dbSNP
rs1165413112 1946 dbSNP
rs947144047 1947 dbSNP
rs541465744 1951 dbSNP
rs960415524 1954 dbSNP
rs1033988638 1957 dbSNP
rs912958176 1962 dbSNP
rs80350945 1963 dbSNP
rs1002098951 1980 dbSNP
rs898317981 1981 dbSNP
rs1016760853 1986 dbSNP
rs1315375205 1988 dbSNP
rs1238732710 1996 dbSNP
rs1274165635 1999 dbSNP
rs1006261593 2002 dbSNP
rs1212300458 2005 dbSNP
rs778744203 2006 dbSNP
rs886485881 2008 dbSNP
rs912490327 2009 dbSNP
rs1480669717 2010 dbSNP
rs1277548504 2016 dbSNP
rs985316110 2026 dbSNP
rs1047817924 2027 dbSNP
rs1418185764 2035 dbSNP
rs541415708 2037 dbSNP
rs1188250007 2041 dbSNP
rs375846878 2043 dbSNP
rs901862381 2048 dbSNP
rs1164126491 2054 dbSNP
rs1355102867 2066 dbSNP
rs138571274 2075 dbSNP
rs1354755287 2084 dbSNP
rs1026967008 2086 dbSNP
rs974033669 2089 dbSNP
rs1172033085 2091 dbSNP
rs1371316891 2095 dbSNP
rs943630661 2103 dbSNP
rs961520885 2116 dbSNP
rs1294148811 2130 dbSNP
rs1467531006 2135 dbSNP
rs1421907421 2139 dbSNP
rs1231914704 2141 dbSNP
rs1016093723 2157 dbSNP
rs534112984 2168 dbSNP
rs1013758407 2176 dbSNP
rs979555574 2178 dbSNP
rs896612134 2179 dbSNP
rs566920132 2190 dbSNP
rs1033943371 2198 dbSNP
rs1002431860 2204 dbSNP
rs1474096649 2210 dbSNP
rs558331874 2211 dbSNP
rs904087083 2211 dbSNP
rs373169648 2212 dbSNP
rs1168263445 2215 dbSNP
rs960630380 2216 dbSNP
rs573967284 2217 dbSNP
rs943900037 2218 dbSNP
rs1456310102 2224 dbSNP
rs912361041 2240 dbSNP
rs985242522 2241 dbSNP
rs1363124583 2246 dbSNP
rs1216780785 2249 dbSNP
rs539507018 2254 dbSNP
rs980650647 2260 dbSNP
rs962644430 2263 dbSNP
rs1336871165 2264 dbSNP
rs186807731 2265 dbSNP
rs1016811128 2281 dbSNP
rs1281996384 2283 dbSNP
rs1003969835 2288 dbSNP
rs1209749868 2294 dbSNP
rs1227273303 2296 dbSNP
rs1242436452 2310 dbSNP
rs1373362145 2311 dbSNP
rs1015685253 2320 dbSNP
rs992621758 2321 dbSNP
rs1448924537 2346 dbSNP
rs773668527 2360 dbSNP
rs1335389767 2361 dbSNP
rs886960096 2364 dbSNP
rs1295118754 2368 dbSNP
rs1174389926 2372 dbSNP
rs1397082091 2375 dbSNP
rs1026794269 2385 dbSNP
rs1333775248 2388 dbSNP
rs997634645 2389 dbSNP
rs1033868338 2392 dbSNP
rs1287621076 2398 dbSNP
rs770544711 2401 dbSNP
rs901828321 2402 dbSNP
rs1039093151 2404 dbSNP
rs71397235 2414 dbSNP
rs1304939717 2436 dbSNP
rs1331116529 2438 dbSNP
rs904139475 2441 dbSNP
rs1462235829 2445 dbSNP
rs1218217090 2446 dbSNP
rs943353939 2447 dbSNP
rs1318498598 2454 dbSNP
rs904070634 2464 dbSNP
rs1022550554 2473 dbSNP
rs1011242502 2474 dbSNP
rs201071536 2475 dbSNP
rs891428292 2478 dbSNP
rs550988795 2480 dbSNP
rs1352153116 2486 dbSNP
rs12441854 2487 dbSNP
rs777532736 2489 dbSNP
rs943809221 2492 dbSNP
rs1409065450 2498 dbSNP
rs1402785842 2501 dbSNP
rs1157429131 2512 dbSNP
rs1388408442 2514 dbSNP
rs914095612 2519 dbSNP
rs1442221632 2523 dbSNP
rs890863365 2534 dbSNP
rs1368063973 2535 dbSNP
rs1056601295 2541 dbSNP
rs1435214390 2544 dbSNP
rs770255028 2545 dbSNP
rs748471958 2547 dbSNP
rs980367789 2548 dbSNP
rs781699006 2552 dbSNP
rs1335258002 2553 dbSNP
rs1383579712 2555 dbSNP
rs1365105006 2561 dbSNP
rs909776301 2564 dbSNP
rs1324596925 2566 dbSNP
rs1461567094 2566 dbSNP
rs951182313 2571 dbSNP
rs1263632889 2572 dbSNP
rs1411618200 2574 dbSNP
rs1220710718 2576 dbSNP
rs1317029886 2577 dbSNP
rs1167732801 2578 dbSNP
rs1395837721 2583 dbSNP
rs1392987959 2598 dbSNP
rs1404217921 2601 dbSNP
rs568346051 2608 dbSNP
rs546880823 2609 dbSNP
rs1439502512 2613 dbSNP
rs1029527285 2619 dbSNP
rs919848648 2621 dbSNP
rs1375702325 2625 dbSNP
rs1234975307 2626 dbSNP
rs1291340424 2638 dbSNP
rs998001993 2642 dbSNP
rs1038219038 2643 dbSNP
rs1303639403 2645 dbSNP
rs1442132900 2659 dbSNP
rs1273744803 2660 dbSNP
rs940048505 2662 dbSNP
rs528407396 2668 dbSNP
rs1393302759 2669 dbSNP
rs1251448145 2671 dbSNP
rs1292336923 2677 dbSNP
rs908514408 2678 dbSNP
rs992151559 2690 dbSNP
rs1017709491 2700 dbSNP
rs150106375 2705 dbSNP
rs1169019451 2706 dbSNP
rs1420950390 2715 dbSNP
rs185682516 2719 dbSNP
rs1407716435 2722 dbSNP
rs530512225 2735 dbSNP
rs1307015548 2739 dbSNP
rs563091109 2743 dbSNP
rs1416362348 2752 dbSNP
rs1310809405 2753 dbSNP
rs980974671 2756 dbSNP
rs7172504 2760 dbSNP
rs1043981753 2762 dbSNP
rs140784562 2763 dbSNP
rs1010211503 2773 dbSNP
rs1226351129 2778 dbSNP
rs956959732 2781 dbSNP
rs1434736749 2782 dbSNP
rs1264964360 2791 dbSNP
rs1213326893 2793 dbSNP
rs574131438 2794 dbSNP
rs892617671 2800 dbSNP
rs1442216245 2801 dbSNP
rs1194430514 2815 dbSNP
rs1190610400 2822 dbSNP
rs78040140 2843 dbSNP
rs1007888504 2845 dbSNP
rs939520058 2849 dbSNP
rs79281411 2854 dbSNP
rs1372892203 2857 dbSNP
rs1171379256 2859 dbSNP
rs1401151606 2873 dbSNP
rs1382639406 2878 dbSNP
rs1320190226 2881 dbSNP
rs1324666716 2886 dbSNP
rs1432949230 2889 dbSNP
rs80298732 2890 dbSNP
rs941007405 2892 dbSNP
rs1280663658 2900 dbSNP
rs1234925472 2904 dbSNP
rs898304542 2920 dbSNP
rs193130456 2923 dbSNP
rs1206146355 2936 dbSNP
rs1299633663 2938 dbSNP
rs1463906043 2939 dbSNP
rs1188514866 2940 dbSNP
rs909576848 2949 dbSNP
rs983092728 2953 dbSNP
rs758554832 2956 dbSNP
rs1454101166 2968 dbSNP
rs11635534 2970 dbSNP
rs1386221860 2972 dbSNP
rs1300540337 2979 dbSNP
rs976578994 2980 dbSNP
rs963885280 2984 dbSNP
rs1017676834 2988 dbSNP
rs35486349 3006 dbSNP
rs1467770623 3025 dbSNP
rs968026479 3037 dbSNP
rs373866660 3044 dbSNP
rs1299443159 3047 dbSNP
rs1330787795 3049 dbSNP
rs1376077057 3052 dbSNP
rs939364006 3053 dbSNP
rs1175098470 3059 dbSNP
rs577141007 3060 dbSNP
rs1265277878 3063 dbSNP
rs1208578891 3071 dbSNP
rs1191393120 3073 dbSNP
rs1469409429 3084 dbSNP
rs1189000911 3087 dbSNP
rs1487700861 3097 dbSNP
rs1266191706 3107 dbSNP
rs1419260426 3111 dbSNP
rs1183563239 3122 dbSNP
rs1409412258 3126 dbSNP
rs926695271 3127 dbSNP
rs1010229484 3151 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cgucggucgagauggggGCGgu 5'
                           |||  
Target 5' guagcugggacuacaggCGC-- 3'
4 - 23
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000268097.5 | 3UTR | CCAGUAGCUGGGACUACAGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
90 hsa-miR-6787-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT449091 XPO6 exportin 6 2 2
MIRT449991 PSMG1 proteasome assembly chaperone 1 2 2
MIRT454608 MYADM myeloid associated differentiation marker 2 2
MIRT456116 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT457064 TOR4A torsin family 4 member A 2 2
MIRT461023 SDF4 stromal cell derived factor 4 2 2
MIRT467197 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT471711 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2 2
MIRT472566 NACC1 nucleus accumbens associated 1 2 2
MIRT476079 GRB2 growth factor receptor bound protein 2 2 2
MIRT480150 CALR calreticulin 2 2
MIRT483027 KHSRP KH-type splicing regulatory protein 2 4
MIRT483498 STMN3 stathmin 3 2 4
MIRT483728 THSD4 thrombospondin type 1 domain containing 4 2 2
MIRT484550 BARHL1 BarH like homeobox 1 2 6
MIRT484684 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT486059 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT486116 INO80E INO80 complex subunit E 2 2
MIRT486313 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486525 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486857 DPF1 double PHD fingers 1 2 2
MIRT487352 PHF15 jade family PHD finger 2 1 1
MIRT487582 FAM83H family with sequence similarity 83 member H 2 4
MIRT487792 GPR20 G protein-coupled receptor 20 2 4
MIRT488104 POU3F1 POU class 3 homeobox 1 2 2
MIRT488786 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT489361 SYNGR1 synaptogyrin 1 2 4
MIRT489387 RAB11B RAB11B, member RAS oncogene family 2 2
MIRT489680 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT489731 GNAI2 G protein subunit alpha i2 2 4
MIRT489750 TACC3 transforming acidic coiled-coil containing protein 3 2 2
MIRT490029 PCSK4 proprotein convertase subtilisin/kexin type 4 2 2
MIRT490379 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT490580 SLC47A1 solute carrier family 47 member 1 2 2
MIRT490753 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT491187 JUND JunD proto-oncogene, AP-1 transcription factor subunit 2 4
MIRT491301 VGF VGF nerve growth factor inducible 2 2
MIRT491462 HOXB8 homeobox B8 2 2
MIRT491702 PDZD4 PDZ domain containing 4 2 2
MIRT491724 RTN4R reticulon 4 receptor 2 2
MIRT491737 SEMA3F semaphorin 3F 2 2
MIRT491984 UNK unkempt family zinc finger 2 2
MIRT492844 NRGN neurogranin 2 2
MIRT492936 NEUROD2 neuronal differentiation 2 2 4
MIRT493713 H2AFX H2A histone family member X 2 2
MIRT494623 ASB6 ankyrin repeat and SOCS box containing 6 2 4
MIRT494703 ARHGAP31 Rho GTPase activating protein 31 2 2
MIRT495602 NKX2-5 NK2 homeobox 5 2 2
MIRT495750 PDE4C phosphodiesterase 4C 2 4
MIRT500367 ZNF385A zinc finger protein 385A 2 2
MIRT501161 SLC10A7 solute carrier family 10 member 7 2 6
MIRT501702 PCGF3 polycomb group ring finger 3 2 6
MIRT504922 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT517945 TRIM59 tripartite motif containing 59 2 2
MIRT524212 DDI2 DNA damage inducible 1 homolog 2 2 6
MIRT531186 SIGLEC12 sialic acid binding Ig like lectin 12 (gene/pseudogene) 2 2
MIRT531972 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT558055 EVI5L ecotropic viral integration site 5 like 2 2
MIRT560482 LACE1 AFG1 like ATPase 2 2
MIRT563217 FXN frataxin 2 2
MIRT569095 FSCN1 fascin actin-bundling protein 1 2 2
MIRT569522 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT569531 CTTN cortactin 2 2
MIRT569848 RGS5 regulator of G protein signaling 5 2 2
MIRT570738 ANKRD52 ankyrin repeat domain 52 2 2
MIRT574140 MARVELD1 MARVEL domain containing 1 2 2
MIRT615994 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT628493 ZNF556 zinc finger protein 556 2 2
MIRT633451 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT649054 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649340 HEXA hexosaminidase subunit alpha 2 2
MIRT670226 PTCHD1 patched domain containing 1 2 2
MIRT670666 KIAA1551 KIAA1551 2 2
MIRT671452 CDH7 cadherin 7 2 2
MIRT671729 ZNF451 zinc finger protein 451 2 2
MIRT690285 ZNF154 zinc finger protein 154 2 2
MIRT700575 PRSS22 protease, serine 22 2 2
MIRT701411 NKRF NFKB repressing factor 2 2
MIRT711877 VASP vasodilator stimulated phosphoprotein 2 2
MIRT712082 UNC13A unc-13 homolog A 2 2
MIRT712523 CYTH2 cytohesin 2 2 2
MIRT712751 GMDS GDP-mannose 4,6-dehydratase 2 2
MIRT714681 PRX periaxin 2 2
MIRT714718 VPS8 VPS8, CORVET complex subunit 2 2
MIRT717508 HRNR hornerin 2 2
MIRT717650 THBS2 thrombospondin 2 2 2
MIRT719592 PIAS4 protein inhibitor of activated STAT 4 2 2
MIRT720521 PTGR2 prostaglandin reductase 2 2 2
MIRT721295 C3orf36 chromosome 3 open reading frame 36 2 2
MIRT724922 VPS18 VPS18, CORVET/HOPS core subunit 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6787 Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6787-5p Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-6787-5p Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-6787-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-6787-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6787-5p Tamoxifen 2733525 NSC180973 approved sensitive cell line (LCC2)
hsa-miR-6787-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-6787-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-6787-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-6787-5p Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)

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