pre-miRNA Information
pre-miRNA hsa-mir-2115   
Genomic Coordinates chr3: 48316360 - 48316459
Description Homo sapiens miR-2115 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-2115-5p
Sequence 21| AGCUUCCAUGACUCCUGAUGGA |42
Evidence Experimental
Experiments 454
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs372327506 9 dbSNP
rs1259362191 10 dbSNP
rs1215292065 12 dbSNP
rs1197671843 16 dbSNP
rs1468768022 20 dbSNP
rs1273755407 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol LILRA2   
Synonyms CD85H, ILT1, LIR-7, LIR7
Description leukocyte immunoglobulin like receptor A2
Transcript NM_001130917   
Other Transcripts NM_006866   
Expression
Putative miRNA Targets on LILRA2
3'UTR of LILRA2
(miRNA target sites are highlighted)
>LILRA2|NM_001130917|3'UTR
   1 ACAGCAGAGAGGACAATGCATCCTTCAGCGTGGTGGAGCCTCAGGGACAGATCTGATGATCCCAGGAGGCTCTGGAGGAC
  81 AATCTAGGACCTACATTATCTGGACTGTATGCTGGTCATTTCTAGAGACAGCAATCAATATTTGAGTGTAAGGAAACTGT
 161 CTGGGGTGATTCCTAGAAGATCATTAAACTGTGGTACATTTTTTTGTCTATGAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agguaGUCCUC--AGUACCUUCga 5'
               ||||||  || ||||:|  
Target 5' gatccCAGGAGGCTC-TGGAGGac 3'
58 - 80 126.00 -18.90
2
miRNA  3' agGUAGUCCUCAGUACCUUCGa 5'
            | ||| | || :||||: | 
Target 5' tcCTTCA-GCGTGGTGGAGCCt 3'
21 - 41 111.00 -16.30
3
miRNA  3' agGUAGUCCUC----AGUACCUUCga 5'
            ::|| ||:|    || | ||||  
Target 5' acTGTCTGGGGTGATTCCTAGAAGat 3'
156 - 181 106.00 -13.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM4081345 1 COSMIC
COSN32059494 8 COSMIC
COSN30156749 10 COSMIC
COSN30449439 12 COSMIC
COSN28189450 14 COSMIC
COSN8606444 19 COSMIC
COSN30179843 20 COSMIC
COSN31512403 23 COSMIC
COSN30487015 27 COSMIC
COSN30466440 46 COSMIC
COSN24315302 59 COSMIC
COSN13830485 66 COSMIC
COSN31596468 83 COSMIC
COSN6147397 93 COSMIC
COSN8606445 101 COSMIC
COSN28703846 104 COSMIC
COSN31557619 145 COSMIC
COSN30130046 167 COSMIC
COSN5762069 255 COSMIC
COSN25986518 439 COSMIC
COSN20920519 904 COSMIC
COSN26890508 1013 COSMIC
COSN1771944 1029 COSMIC
COSN17193371 1085 COSMIC
COSN1218638 1093 COSMIC
COSN5439484 1111 COSMIC
COSN15715199 1370 COSMIC
COSN1771946 1390 COSMIC
COSN21325738 1727 COSMIC
COSN21326057 1728 COSMIC
COSN22400111 1794 COSMIC
COSN7449791 1837 COSMIC
COSN26071814 1925 COSMIC
COSN9852365 1932 COSMIC
COSN30408763 2027 COSMIC
COSN17187453 2074 COSMIC
COSN8976115 2091 COSMIC
COSN22546348 2126 COSMIC
COSN1771949 2260 COSMIC
COSN21451638 2353 COSMIC
COSN29657905 2418 COSMIC
COSN9226912 2485 COSMIC
COSN26227281 2504 COSMIC
COSN8976116 2642 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs532604914 3 dbSNP
rs1177852650 7 dbSNP
rs200724105 8 dbSNP
rs1473763155 11 dbSNP
rs1275809343 15 dbSNP
rs201511003 16 dbSNP
rs922128976 20 dbSNP
rs141722714 22 dbSNP
rs1052122 23 dbSNP
rs754283670 30 dbSNP
rs755343223 31 dbSNP
rs1446471194 33 dbSNP
rs1337860554 34 dbSNP
rs753108981 35 dbSNP
rs1446501586 40 dbSNP
rs756854982 41 dbSNP
rs146045183 42 dbSNP
rs1214709114 46 dbSNP
rs1007637726 49 dbSNP
rs745329392 51 dbSNP
rs1309654956 70 dbSNP
rs532939298 75 dbSNP
rs1016719533 79 dbSNP
rs550082834 89 dbSNP
rs1363989198 90 dbSNP
rs1162735997 92 dbSNP
rs1458528528 93 dbSNP
rs189682852 96 dbSNP
rs1157476620 101 dbSNP
rs973971276 103 dbSNP
rs1252934873 105 dbSNP
rs1305041482 106 dbSNP
rs1184851807 108 dbSNP
rs56789693 110 dbSNP
rs1042060291 115 dbSNP
rs906159666 117 dbSNP
rs1003451068 118 dbSNP
rs1258435681 119 dbSNP
rs981707458 123 dbSNP
rs775071239 125 dbSNP
rs1054965399 130 dbSNP
rs139968405 133 dbSNP
rs1282745623 136 dbSNP
rs1323073364 137 dbSNP
rs1387567156 139 dbSNP
rs895004056 140 dbSNP
rs1392916657 149 dbSNP
rs73939009 150 dbSNP
rs549059140 152 dbSNP
rs947000205 153 dbSNP
rs1042002469 154 dbSNP
rs573664905 157 dbSNP
rs777645717 162 dbSNP
rs933539030 164 dbSNP
rs1197024177 166 dbSNP
rs566172495 169 dbSNP
rs1453006248 171 dbSNP
rs1052399317 174 dbSNP
rs1207612407 175 dbSNP
rs535084338 183 dbSNP
rs552021758 185 dbSNP
rs1343945820 188 dbSNP
rs1193839724 190 dbSNP
rs1234172010 191 dbSNP
rs181242773 195 dbSNP
rs1293480220 199 dbSNP
rs1434556310 200 dbSNP
rs141542769 207 dbSNP
rs1008062552 208 dbSNP
rs1175842452 211 dbSNP
rs1016318321 215 dbSNP
rs1018953286 216 dbSNP
rs966432859 218 dbSNP
rs750275726 225 dbSNP
rs975031433 227 dbSNP
rs1329924030 236 dbSNP
rs892195638 239 dbSNP
rs1441766023 240 dbSNP
rs1007994398 241 dbSNP
rs34448127 241 dbSNP
rs1019257225 244 dbSNP
rs146169708 248 dbSNP
rs957579561 259 dbSNP
rs1201644724 268 dbSNP
rs1441790531 271 dbSNP
rs1026255924 275 dbSNP
rs990334864 278 dbSNP
rs537635209 280 dbSNP
rs139105406 281 dbSNP
rs1206460927 286 dbSNP
rs116788087 287 dbSNP
rs1456891303 292 dbSNP
rs1365940276 293 dbSNP
rs386810930 302 dbSNP
rs73939010 303 dbSNP
rs73939011 304 dbSNP
rs938999767 309 dbSNP
rs149895927 313 dbSNP
rs1416574092 316 dbSNP
rs144939109 318 dbSNP
rs1394798987 319 dbSNP
rs148782921 325 dbSNP
rs577455492 327 dbSNP
rs1048890022 328 dbSNP
rs144811667 333 dbSNP
rs530067929 333 dbSNP
rs1189349776 335 dbSNP
rs1435809890 338 dbSNP
rs563602054 339 dbSNP
rs1273660096 341 dbSNP
rs1204655172 346 dbSNP
rs1462001843 347 dbSNP
rs368844517 348 dbSNP
rs147959175 353 dbSNP
rs1348347591 356 dbSNP
rs1005002400 357 dbSNP
rs889292956 365 dbSNP
rs1019444158 366 dbSNP
rs1307831909 368 dbSNP
rs773769435 370 dbSNP
rs112780593 378 dbSNP
rs185750760 389 dbSNP
rs1161124378 391 dbSNP
rs551947952 392 dbSNP
rs77945897 393 dbSNP
rs1164861377 406 dbSNP
rs993530934 409 dbSNP
rs1026308231 411 dbSNP
rs1182697962 414 dbSNP
rs531139063 425 dbSNP
rs906539961 428 dbSNP
rs1233355064 430 dbSNP
rs759133979 431 dbSNP
rs550856761 433 dbSNP
rs1035578155 438 dbSNP
rs145366319 439 dbSNP
rs1242369722 440 dbSNP
rs374277801 442 dbSNP
rs1351930674 458 dbSNP
rs958799549 461 dbSNP
rs190405956 465 dbSNP
rs1349917251 468 dbSNP
rs369096376 469 dbSNP
rs1455558818 473 dbSNP
rs1411204778 476 dbSNP
rs1159623731 477 dbSNP
rs371696952 479 dbSNP
rs1167757959 481 dbSNP
rs536517793 494 dbSNP
rs181649025 495 dbSNP
rs187345912 497 dbSNP
rs534307932 504 dbSNP
rs1347221678 505 dbSNP
rs73939012 508 dbSNP
rs191977125 510 dbSNP
rs1339738245 514 dbSNP
rs1331594521 515 dbSNP
rs566469819 519 dbSNP
rs73939013 520 dbSNP
rs182647299 521 dbSNP
rs1276077300 522 dbSNP
rs977168742 524 dbSNP
rs924277980 538 dbSNP
rs1321065139 554 dbSNP
rs1227265342 561 dbSNP
rs753865620 565 dbSNP
rs1175153583 567 dbSNP
rs930571037 572 dbSNP
rs1049444447 579 dbSNP
rs886313458 582 dbSNP
rs187653783 615 dbSNP
rs73939014 619 dbSNP
rs1189735699 621 dbSNP
rs765145587 622 dbSNP
rs751760870 623 dbSNP
rs1486207568 624 dbSNP
rs901946699 627 dbSNP
rs150225791 629 dbSNP
rs1029004787 631 dbSNP
rs528545440 633 dbSNP
rs771484804 635 dbSNP
rs190137361 640 dbSNP
rs182603384 642 dbSNP
rs187308010 651 dbSNP
rs1302037955 652 dbSNP
rs1466407963 653 dbSNP
rs1175684580 655 dbSNP
rs1428101465 671 dbSNP
rs967598607 672 dbSNP
rs1389585060 675 dbSNP
rs1003468154 680 dbSNP
rs541173451 685 dbSNP
rs530876347 689 dbSNP
rs755156772 691 dbSNP
rs551177873 697 dbSNP
rs375455069 702 dbSNP
rs117457688 710 dbSNP
rs192131216 713 dbSNP
rs1341079388 714 dbSNP
rs1274688880 720 dbSNP
rs117041916 727 dbSNP
rs117511157 732 dbSNP
rs960447579 741 dbSNP
rs138803777 746 dbSNP
rs1381023809 747 dbSNP
rs1021501082 748 dbSNP
rs1277079540 749 dbSNP
rs968501198 766 dbSNP
rs8102050 777 dbSNP
rs6509887 783 dbSNP
rs1164611820 791 dbSNP
rs113966302 798 dbSNP
rs1420445178 806 dbSNP
rs1180518688 808 dbSNP
rs1482521145 810 dbSNP
rs1252161480 811 dbSNP
rs1197194323 813 dbSNP
rs907797031 814 dbSNP
rs1264380266 817 dbSNP
rs940595142 835 dbSNP
rs1286197166 838 dbSNP
rs149096967 846 dbSNP
rs1350091114 847 dbSNP
rs185364877 852 dbSNP
rs188859436 853 dbSNP
rs987178316 854 dbSNP
rs79063917 865 dbSNP
rs868447994 868 dbSNP
rs1413779280 878 dbSNP
rs1458836862 881 dbSNP
rs1329458607 886 dbSNP
rs1397404276 895 dbSNP
rs73612442 897 dbSNP
rs1443960828 923 dbSNP
rs1413162313 924 dbSNP
rs193104068 930 dbSNP
rs117591008 932 dbSNP
rs1266032850 936 dbSNP
rs184302436 942 dbSNP
rs745459176 943 dbSNP
rs1469763845 948 dbSNP
rs973624457 952 dbSNP
rs570320117 953 dbSNP
rs1344770653 955 dbSNP
rs893163636 966 dbSNP
rs1451738660 969 dbSNP
rs920765262 972 dbSNP
rs929442167 973 dbSNP
rs1011976709 975 dbSNP
rs111578730 980 dbSNP
rs867542890 981 dbSNP
rs272405 984 dbSNP
rs1470038854 985 dbSNP
rs760070754 986 dbSNP
rs574354803 987 dbSNP
rs1464205489 989 dbSNP
rs1376784472 996 dbSNP
rs1477591233 997 dbSNP
rs1011990971 1002 dbSNP
rs1245671026 1005 dbSNP
rs1187808452 1008 dbSNP
rs553308418 1010 dbSNP
rs1286048679 1013 dbSNP
rs1198586031 1019 dbSNP
rs1343120236 1020 dbSNP
rs1255567647 1030 dbSNP
rs951774632 1033 dbSNP
rs1042963033 1035 dbSNP
rs1434987184 1036 dbSNP
rs1463574394 1038 dbSNP
rs1320695420 1040 dbSNP
rs573136405 1041 dbSNP
rs113216762 1043 dbSNP
rs138761841 1044 dbSNP
rs1031903459 1049 dbSNP
rs1167459513 1053 dbSNP
rs1388095444 1054 dbSNP
rs113167553 1055 dbSNP
rs59979031 1056 dbSNP
rs1441562757 1057 dbSNP
rs1431961347 1061 dbSNP
rs1256627437 1062 dbSNP
rs1211802444 1063 dbSNP
rs561424420 1064 dbSNP
rs1272538277 1065 dbSNP
rs1419008165 1067 dbSNP
rs1280626310 1071 dbSNP
rs1017311014 1074 dbSNP
rs1340667813 1084 dbSNP
rs964689850 1085 dbSNP
rs973632681 1086 dbSNP
rs923137572 1088 dbSNP
rs1313897551 1095 dbSNP
rs1416221650 1099 dbSNP
rs1368387190 1100 dbSNP
rs950903686 1101 dbSNP
rs1161346963 1102 dbSNP
rs1429762761 1102 dbSNP
rs180943055 1102 dbSNP
rs1472437828 1105 dbSNP
rs1368803180 1108 dbSNP
rs1189854209 1110 dbSNP
rs1273825958 1111 dbSNP
rs1249968474 1112 dbSNP
rs546742199 1117 dbSNP
rs560421011 1118 dbSNP
rs947473244 1120 dbSNP
rs1042116364 1121 dbSNP
rs903152189 1122 dbSNP
rs746422799 1125 dbSNP
rs938966450 1133 dbSNP
rs939483328 1134 dbSNP
rs1349030525 1136 dbSNP
rs532631429 1139 dbSNP
rs550982117 1147 dbSNP
rs1321064493 1148 dbSNP
rs916594891 1152 dbSNP
rs1391448249 1153 dbSNP
rs894670556 1156 dbSNP
rs1476835871 1157 dbSNP
rs1471457277 1159 dbSNP
rs112416574 1164 dbSNP
rs1027086542 1176 dbSNP
rs1043015857 1178 dbSNP
rs444632 1180 dbSNP
rs904466104 1182 dbSNP
rs934551895 1191 dbSNP
rs1365624699 1192 dbSNP
rs112927674 1193 dbSNP
rs444250 1197 dbSNP
rs420685 1203 dbSNP
rs1274288540 1205 dbSNP
rs1401619720 1206 dbSNP
rs1005934970 1207 dbSNP
rs373207 1209 dbSNP
rs1008652365 1213 dbSNP
rs370518429 1215 dbSNP
rs976018452 1217 dbSNP
rs183916439 1218 dbSNP
rs1027258115 1220 dbSNP
rs950994549 1224 dbSNP
rs433810 1226 dbSNP
rs1327763186 1230 dbSNP
rs983658509 1231 dbSNP
rs1265048709 1239 dbSNP
rs1159628843 1246 dbSNP
rs1401474500 1251 dbSNP
rs112643467 1252 dbSNP
rs555294016 1256 dbSNP
rs866969111 1258 dbSNP
rs1477700973 1259 dbSNP
rs1491268294 1259 dbSNP
rs1195989613 1260 dbSNP
rs1347925873 1260 dbSNP
rs1432781698 1260 dbSNP
rs200173819 1260 dbSNP
rs576332421 1260 dbSNP
rs770565167 1260 dbSNP
rs953245532 1269 dbSNP
rs1364424972 1275 dbSNP
rs1287825154 1276 dbSNP
rs1487190609 1277 dbSNP
rs1039249100 1278 dbSNP
rs1432564229 1282 dbSNP
rs1357216967 1286 dbSNP
rs1174170128 1287 dbSNP
rs899564385 1288 dbSNP
rs1192804660 1289 dbSNP
rs1256807966 1298 dbSNP
rs914374081 1300 dbSNP
rs947468875 1304 dbSNP
rs1448197859 1308 dbSNP
rs996629930 1317 dbSNP
rs977527197 1321 dbSNP
rs1048508829 1325 dbSNP
rs1236123448 1326 dbSNP
rs924646433 1328 dbSNP
rs1281805669 1330 dbSNP
rs1485823197 1330 dbSNP
rs1225634000 1333 dbSNP
rs1340857463 1337 dbSNP
rs553171298 1338 dbSNP
rs990935024 1341 dbSNP
rs1376636515 1343 dbSNP
rs373075206 1344 dbSNP
rs374654337 1345 dbSNP
rs979457177 1347 dbSNP
rs1314815519 1353 dbSNP
rs1313996287 1357 dbSNP
rs538963921 1360 dbSNP
rs1427839694 1362 dbSNP
rs1372586515 1372 dbSNP
rs1171690000 1377 dbSNP
rs1430836124 1380 dbSNP
rs1405029807 1382 dbSNP
rs188707164 1386 dbSNP
rs948933891 1389 dbSNP
rs1396358441 1390 dbSNP
rs111825921 1391 dbSNP
rs573629432 1394 dbSNP
rs1312099034 1400 dbSNP
rs544590889 1403 dbSNP
rs1206510854 1406 dbSNP
rs1411545812 1407 dbSNP
rs944508276 1411 dbSNP
rs1288919154 1414 dbSNP
rs1311735963 1415 dbSNP
rs1215691992 1416 dbSNP
rs1038800346 1418 dbSNP
rs900281592 1423 dbSNP
rs1327806333 1424 dbSNP
rs117855300 1435 dbSNP
rs574834086 1445 dbSNP
rs181547100 1446 dbSNP
rs78355464 1450 dbSNP
rs1348715531 1453 dbSNP
rs1027310262 1457 dbSNP
rs1475700112 1462 dbSNP
rs1420514075 1471 dbSNP
rs1180071546 1477 dbSNP
rs115220149 1480 dbSNP
rs577528736 1481 dbSNP
rs1177329311 1486 dbSNP
rs1379861242 1487 dbSNP
rs186795929 1492 dbSNP
rs1302783633 1493 dbSNP
rs1266038856 1494 dbSNP
rs1397256493 1501 dbSNP
rs1335440736 1503 dbSNP
rs753005093 1504 dbSNP
rs1329538080 1506 dbSNP
rs1012854408 1508 dbSNP
rs1462446988 1508 dbSNP
rs960924903 1508 dbSNP
rs1023795848 1509 dbSNP
rs552483123 1511 dbSNP
rs1364071737 1512 dbSNP
rs1021913094 1513 dbSNP
rs8105598 1515 dbSNP
rs1301791709 1517 dbSNP
rs1313743966 1518 dbSNP
rs1230925016 1519 dbSNP
rs1255361020 1524 dbSNP
rs756165919 1525 dbSNP
rs114350991 1527 dbSNP
rs1200024948 1528 dbSNP
rs1235972375 1529 dbSNP
rs938740129 1532 dbSNP
rs1457084112 1545 dbSNP
rs192153830 1547 dbSNP
rs144825533 1551 dbSNP
rs1427623464 1556 dbSNP
rs992790767 1559 dbSNP
rs536325747 1560 dbSNP
rs1425036730 1561 dbSNP
rs1302827265 1564 dbSNP
rs1442237479 1565 dbSNP
rs911772385 1568 dbSNP
rs1467222104 1572 dbSNP
rs944619018 1573 dbSNP
rs147501729 1575 dbSNP
rs35328325 1580 dbSNP
rs1015455864 1582 dbSNP
rs1295535255 1583 dbSNP
rs921760458 1586 dbSNP
rs1048636870 1591 dbSNP
rs749759184 1593 dbSNP
rs940188555 1597 dbSNP
rs1037576407 1601 dbSNP
rs959975637 1602 dbSNP
rs12983953 1606 dbSNP
rs1022815247 1612 dbSNP
rs1447298405 1614 dbSNP
rs997229742 1616 dbSNP
rs1051439536 1617 dbSNP
rs1332308322 1622 dbSNP
rs76828736 1626 dbSNP
rs1007523584 1628 dbSNP
rs1279693279 1638 dbSNP
rs1235193228 1640 dbSNP
rs558625642 1644 dbSNP
rs779282229 1645 dbSNP
rs8106636 1647 dbSNP
rs1320748868 1649 dbSNP
rs978877164 1651 dbSNP
rs772524625 1654 dbSNP
rs1033387859 1659 dbSNP
rs956063290 1660 dbSNP
rs960121756 1665 dbSNP
rs988845918 1666 dbSNP
rs992864460 1668 dbSNP
rs1406049199 1669 dbSNP
rs1475727278 1670 dbSNP
rs767638124 1684 dbSNP
rs970011998 1687 dbSNP
rs984806198 1688 dbSNP
rs272406 1691 dbSNP
rs944964750 1692 dbSNP
rs940241034 1693 dbSNP
rs974885963 1694 dbSNP
rs1000960384 1697 dbSNP
rs922138446 1698 dbSNP
rs1276266553 1704 dbSNP
rs879291262 1708 dbSNP
rs1031061743 1710 dbSNP
rs922733914 1721 dbSNP
rs79717751 1722 dbSNP
rs1293459548 1726 dbSNP
rs932361054 1727 dbSNP
rs574613160 1728 dbSNP
rs1319623032 1736 dbSNP
rs540353905 1737 dbSNP
rs60289078 1752 dbSNP
rs768237313 1765 dbSNP
rs117433298 1775 dbSNP
rs1263163592 1777 dbSNP
rs761783553 1778 dbSNP
rs769839139 1781 dbSNP
rs773264826 1790 dbSNP
rs373623589 1793 dbSNP
rs577060623 1794 dbSNP
rs545947747 1795 dbSNP
rs930443611 1803 dbSNP
rs1411878088 1811 dbSNP
rs1274249412 1815 dbSNP
rs113130030 1821 dbSNP
rs1159475367 1822 dbSNP
rs1278428051 1823 dbSNP
rs907654382 1826 dbSNP
rs1337020584 1828 dbSNP
rs940439800 1831 dbSNP
rs1056566950 1835 dbSNP
rs999144032 1840 dbSNP
rs754045838 1841 dbSNP
rs762626612 1848 dbSNP
rs896153683 1852 dbSNP
rs1012917968 1863 dbSNP
rs1470517467 1865 dbSNP
rs1031537334 1866 dbSNP
rs1296248324 1868 dbSNP
rs1303013400 1871 dbSNP
rs35031040 1871 dbSNP
rs67467929 1874 dbSNP
rs201163994 1876 dbSNP
rs1468456601 1885 dbSNP
rs959862336 1893 dbSNP
rs1045309570 1894 dbSNP
rs367753288 1894 dbSNP
rs1014315155 1895 dbSNP
rs904036858 1896 dbSNP
rs182212262 1898 dbSNP
rs34634665 1910 dbSNP
rs560967679 1913 dbSNP
rs1023186186 1916 dbSNP
rs905698390 1921 dbSNP
rs117980180 1925 dbSNP
rs746333120 1930 dbSNP
rs1327656763 1933 dbSNP
rs1214958405 1934 dbSNP
rs909833033 1939 dbSNP
rs1344396832 1942 dbSNP
rs1317857600 1943 dbSNP
rs1285922139 1954 dbSNP
rs1443553906 1958 dbSNP
rs1401529403 1959 dbSNP
rs1382212744 1960 dbSNP
rs1212874890 1961 dbSNP
rs1235736647 1963 dbSNP
rs1482983011 1965 dbSNP
rs1396148012 1966 dbSNP
rs1179443062 1972 dbSNP
rs1196058975 1973 dbSNP
rs546758220 1974 dbSNP
rs566570479 1976 dbSNP
rs1441284760 1979 dbSNP
rs570281848 1980 dbSNP
rs1241915392 1983 dbSNP
rs1216035831 1984 dbSNP
rs1156688977 1990 dbSNP
rs1407148674 1991 dbSNP
rs758907969 1992 dbSNP
rs892572463 1996 dbSNP
rs866367597 2002 dbSNP
rs1347993447 2007 dbSNP
rs922805975 2008 dbSNP
rs1212771300 2016 dbSNP
rs1336097064 2018 dbSNP
rs1270604187 2022 dbSNP
rs1356893721 2026 dbSNP
rs8108938 2027 dbSNP
rs987249045 2030 dbSNP
rs374495232 2031 dbSNP
rs552307817 2042 dbSNP
rs1028837114 2045 dbSNP
rs1279274697 2051 dbSNP
rs951946062 2053 dbSNP
rs984618752 2067 dbSNP
rs59401092 2070 dbSNP
rs145394402 2072 dbSNP
rs554543376 2073 dbSNP
rs1485692384 2074 dbSNP
rs934634358 2075 dbSNP
rs1052947184 2081 dbSNP
rs1306911290 2082 dbSNP
rs568148639 2088 dbSNP
rs1216043383 2099 dbSNP
rs1240263152 2106 dbSNP
rs1291623623 2118 dbSNP
rs1414420258 2127 dbSNP
rs991886668 2130 dbSNP
rs1014053563 2139 dbSNP
rs1456656316 2148 dbSNP
rs1178272798 2149 dbSNP
rs1354531349 2151 dbSNP
rs1171748435 2152 dbSNP
rs764097890 2153 dbSNP
rs1467450474 2162 dbSNP
rs1232029336 2165 dbSNP
rs1416190208 2165 dbSNP
rs1186724962 2170 dbSNP
rs1478252812 2171 dbSNP
rs549834499 2174 dbSNP
rs956137936 2176 dbSNP
rs1175029522 2183 dbSNP
rs1480032068 2184 dbSNP
rs533920450 2186 dbSNP
rs1006014026 2187 dbSNP
rs1016972048 2195 dbSNP
rs553855249 2196 dbSNP
rs568105911 2197 dbSNP
rs904126542 2200 dbSNP
rs988793739 2204 dbSNP
rs576888930 2208 dbSNP
rs1314926611 2212 dbSNP
rs546097669 2217 dbSNP
rs142269687 2223 dbSNP
rs1299206581 2228 dbSNP
rs1449685515 2239 dbSNP
rs936891613 2242 dbSNP
rs1273553935 2243 dbSNP
rs1461623620 2246 dbSNP
rs1323533963 2250 dbSNP
rs1369777308 2260 dbSNP
rs1156494511 2261 dbSNP
rs151277467 2264 dbSNP
rs1250641635 2272 dbSNP
rs892632080 2275 dbSNP
rs372302972 2282 dbSNP
rs550623983 2286 dbSNP
rs1214159649 2287 dbSNP
rs1358220836 2288 dbSNP
rs1267386535 2290 dbSNP
rs117710270 2291 dbSNP
rs187594656 2292 dbSNP
rs140568872 2300 dbSNP
rs540188594 2302 dbSNP
rs1442012226 2303 dbSNP
rs1393363346 2309 dbSNP
rs560298684 2312 dbSNP
rs189790775 2316 dbSNP
rs779254630 2317 dbSNP
rs1160002269 2318 dbSNP
rs552107880 2319 dbSNP
rs978916055 2321 dbSNP
rs925663960 2322 dbSNP
rs1166932993 2326 dbSNP
rs984669789 2328 dbSNP
rs1407436653 2334 dbSNP
rs934307611 2335 dbSNP
rs569060072 2336 dbSNP
rs1286825483 2337 dbSNP
rs1449958423 2337 dbSNP
rs9304761 2338 dbSNP
rs1401072087 2339 dbSNP
rs115602566 2341 dbSNP
rs1235695840 2342 dbSNP
rs1415666416 2342 dbSNP
rs1333167854 2346 dbSNP
rs568009010 2349 dbSNP
rs895753966 2350 dbSNP
rs1299670177 2353 dbSNP
rs949929129 2357 dbSNP
rs1044214433 2359 dbSNP
rs9676790 2363 dbSNP
rs547356361 2364 dbSNP
rs924931479 2366 dbSNP
rs936944403 2368 dbSNP
rs1289238597 2369 dbSNP
rs272407 2373 dbSNP
rs1017417023 2376 dbSNP
rs1201494806 2386 dbSNP
rs897184691 2392 dbSNP
rs1249961270 2394 dbSNP
rs892635574 2397 dbSNP
rs1265304068 2398 dbSNP
rs1426192122 2399 dbSNP
rs1191936525 2400 dbSNP
rs944191082 2408 dbSNP
rs1041542756 2410 dbSNP
rs1473544212 2416 dbSNP
rs1161100723 2417 dbSNP
rs1394324660 2417 dbSNP
rs1167263096 2418 dbSNP
rs1365298776 2419 dbSNP
rs1425532627 2421 dbSNP
rs1420719928 2422 dbSNP
rs1256891203 2423 dbSNP
rs1300563630 2423 dbSNP
rs899944159 2424 dbSNP
rs746593470 2428 dbSNP
rs1248952722 2430 dbSNP
rs1313455261 2431 dbSNP
rs1342347642 2432 dbSNP
rs1192834177 2444 dbSNP
rs768435777 2444 dbSNP
rs1242826577 2445 dbSNP
rs1314654676 2447 dbSNP
rs1231044603 2448 dbSNP
rs1358431787 2448 dbSNP
rs1333789040 2449 dbSNP
rs1333507404 2453 dbSNP
rs182465170 2453 dbSNP
rs1328038092 2455 dbSNP
rs1240648190 2464 dbSNP
rs567624317 2465 dbSNP
rs1162609276 2467 dbSNP
rs895493066 2475 dbSNP
rs1417347434 2476 dbSNP
rs985676581 2476 dbSNP
rs556368452 2479 dbSNP
rs968602536 2483 dbSNP
rs949932208 2485 dbSNP
rs1458638857 2486 dbSNP
rs1044317046 2490 dbSNP
rs962205408 2496 dbSNP
rs1181321180 2509 dbSNP
rs1384278838 2515 dbSNP
rs576619054 2516 dbSNP
rs1160881134 2517 dbSNP
rs747654541 2518 dbSNP
rs1278480657 2519 dbSNP
rs1453590860 2521 dbSNP
rs570439022 2523 dbSNP
rs1025214391 2524 dbSNP
rs1303959802 2524 dbSNP
rs955789869 2528 dbSNP
rs1379096110 2529 dbSNP
rs1404379233 2533 dbSNP
rs1394411311 2534 dbSNP
rs1323821506 2536 dbSNP
rs535668893 2538 dbSNP
rs772123275 2539 dbSNP
rs950002841 2540 dbSNP
rs1158139017 2543 dbSNP
rs1440834667 2545 dbSNP
rs1447231391 2551 dbSNP
rs556100120 2553 dbSNP
rs1311113480 2555 dbSNP
rs1314917774 2561 dbSNP
rs1238193610 2563 dbSNP
rs1256540555 2565 dbSNP
rs769388685 2566 dbSNP
rs1282924863 2567 dbSNP
rs773001683 2573 dbSNP
rs187173990 2574 dbSNP
rs1457887232 2575 dbSNP
rs1233503141 2580 dbSNP
rs1368014278 2590 dbSNP
rs980512780 2595 dbSNP
rs565218066 2598 dbSNP
rs1248811414 2614 dbSNP
rs1418881486 2617 dbSNP
rs1177390813 2618 dbSNP
rs1379919005 2627 dbSNP
rs1172287180 2639 dbSNP
rs1468292157 2643 dbSNP
rs1175869832 2645 dbSNP
rs1193341821 2647 dbSNP
rs1401145484 2649 dbSNP
rs1449195925 2660 dbSNP
rs1241090751 2662 dbSNP
rs1329598997 2662 dbSNP
rs1370847026 2663 dbSNP
rs1390654830 2666 dbSNP
rs1301860042 2668 dbSNP
rs1488956932 2672 dbSNP
rs924942958 2673 dbSNP
rs1221624762 2677 dbSNP
rs1261895175 2680 dbSNP
rs1318039042 2685 dbSNP
rs957657755 2691 dbSNP
rs988811073 2701 dbSNP
rs1249304800 2703 dbSNP
rs1480491589 2718 dbSNP
rs1361022098 2720 dbSNP
rs1277766391 2725 dbSNP
rs536226825 2726 dbSNP
rs1192202247 2732 dbSNP
rs1342413759 2741 dbSNP
rs1311207668 2753 dbSNP
rs1465965652 2757 dbSNP
rs1270082763 2761 dbSNP
rs914134480 2762 dbSNP
rs1199339500 2764 dbSNP
rs1408531855 2765 dbSNP
rs1423382168 2767 dbSNP
rs1170920415 2772 dbSNP
rs1424378844 2773 dbSNP
rs1478622179 2773 dbSNP
rs944275459 2780 dbSNP
rs1483300285 2783 dbSNP
rs1168575263 2784 dbSNP
rs1239065896 2785 dbSNP
rs1306659484 2786 dbSNP
rs1354207945 2787 dbSNP
rs1219471264 2794 dbSNP
rs1320343741 2796 dbSNP
rs1291680677 2803 dbSNP
rs1395458026 2810 dbSNP
rs1380020592 2817 dbSNP
rs1305058862 2823 dbSNP
rs1461292962 2837 dbSNP
rs747834936 2841 dbSNP
rs1041251115 2844 dbSNP
rs1415139061 2848 dbSNP
rs11320412 2850 dbSNP
rs372053541 2850 dbSNP
rs762970283 2854 dbSNP
rs932742046 2856 dbSNP
rs1282585965 2858 dbSNP
rs1340568251 2862 dbSNP
rs1219974266 2863 dbSNP
rs1200230389 2870 dbSNP
rs1292987628 2872 dbSNP
rs1271462534 2877 dbSNP
rs201153209 2879 dbSNP
rs888462979 2890 dbSNP
rs1004195134 2893 dbSNP
rs540248285 2895 dbSNP
rs190247307 2901 dbSNP
rs114217110 2903 dbSNP
rs775638569 2904 dbSNP
rs1222336328 2905 dbSNP
rs1024845681 2911 dbSNP
rs1161772912 2925 dbSNP
rs1351107825 2926 dbSNP
rs1264591589 2932 dbSNP
rs1438552390 2935 dbSNP
rs1478826684 2937 dbSNP
rs1184926933 2940 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' agguaGUCCUCAGUACCUUCGa 5'
               ||||: |   |||||| 
Target 5' ---uaCAGGGUUG--GGAAGC- 3'
1 - 16
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000251377.3 | 3UTR | UACAGGGUUGGGAAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BRCA 0.349 0.13 0.105 0.37 12 Click to see details
HNSC -0.481 0.17 -0.429 0.2 6 Click to see details
LUSC 0.363 0.19 0.214 0.31 8 Click to see details
BLCA 0.376 0.38 0.500 0.33 3 Click to see details
BLCA 0.376 0.38 0.500 0.33 3 Click to see details
BLCA 0.376 0.38 0.500 0.33 3 Click to see details
BLCA 0.376 0.38 0.500 0.33 3 Click to see details
84 hsa-miR-2115-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT155281 IFNAR2 interferon alpha and beta receptor subunit 2 2 6
MIRT257301 MYLIP myosin regulatory light chain interacting protein 2 8
MIRT441907 SEPN1 selenoprotein N 2 2
MIRT442300 ZNF496 zinc finger protein 496 2 2
MIRT468235 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT469331 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT470203 PSAT1 phosphoserine aminotransferase 1 2 6
MIRT475945 GXYLT1 glucoside xylosyltransferase 1 2 4
MIRT481449 ARRB2 arrestin beta 2 2 2
MIRT497440 SLC16A10 solute carrier family 16 member 10 2 2
MIRT498270 KIAA1644 KIAA1644 2 2
MIRT499225 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT501742 NSD1 nuclear receptor binding SET domain protein 1 2 2
MIRT501762 NRF1 nuclear respiratory factor 1 2 6
MIRT527902 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT528559 DNAAF3 dynein axonemal assembly factor 3 2 2
MIRT531252 PDF peptide deformylase, mitochondrial 2 2
MIRT539490 ACTN4 actinin alpha 4 2 2
MIRT550683 YARS tyrosyl-tRNA synthetase 2 2
MIRT573441 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT616740 DCTN5 dynactin subunit 5 2 2
MIRT617626 RAB3IP RAB3A interacting protein 2 2
MIRT620780 MT1A metallothionein 1A 2 2
MIRT623174 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT624880 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT625799 MDC1 mediator of DNA damage checkpoint 1 2 2
MIRT629790 CHRFAM7A CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion 2 2
MIRT630535 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT630762 ZNF445 zinc finger protein 445 2 2
MIRT630921 UNC93A unc-93 homolog A 2 2
MIRT630949 PANK1 pantothenate kinase 1 2 2
MIRT631688 NQO2 N-ribosyldihydronicotinamide:quinone reductase 2 2 2
MIRT633898 FGF10 fibroblast growth factor 10 2 2
MIRT635935 PLA2G12A phospholipase A2 group XIIA 2 2
MIRT636177 THBD thrombomodulin 2 2
MIRT636730 AFAP1 actin filament associated protein 1 2 2
MIRT638038 SHPK sedoheptulokinase 2 2
MIRT639164 LAMTOR3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 2 2
MIRT639260 MANEAL mannosidase endo-alpha like 2 2
MIRT639327 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT639849 YY1 YY1 transcription factor 2 2
MIRT641474 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
MIRT642783 CHCHD3 coiled-coil-helix-coiled-coil-helix domain containing 3 2 2
MIRT643653 MYOCD myocardin 2 2
MIRT645717 PTPRF protein tyrosine phosphatase, receptor type F 2 2
MIRT648018 SLCO4C1 solute carrier organic anion transporter family member 4C1 2 2
MIRT648236 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT648563 MEMO1 mediator of cell motility 1 2 2
MIRT648731 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT650179 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT650721 TNFSF8 TNF superfamily member 8 2 2
MIRT652179 TRIM44 tripartite motif containing 44 2 2
MIRT654272 RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase 2 2
MIRT654493 RAD51L3-RFFL RAD51L3-RFFL readthrough 2 2
MIRT654861 PPM1F protein phosphatase, Mg2+/Mn2+ dependent 1F 2 2
MIRT656392 MCU mitochondrial calcium uniporter 2 2
MIRT656623 LRRC15 leucine rich repeat containing 15 2 2
MIRT657085 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT659793 CBLB Cbl proto-oncogene B 2 2
MIRT660155 BRCC3 BRCA1/BRCA2-containing complex subunit 3 2 2
MIRT662444 SERPINB5 serpin family B member 5 2 2
MIRT663116 SPTA1 spectrin alpha, erythrocytic 1 2 2
MIRT665759 TMEM43 transmembrane protein 43 2 2
MIRT666357 SIKE1 suppressor of IKBKE 1 2 2
MIRT668521 ESRRG estrogen related receptor gamma 2 2
MIRT677776 FKTN fukutin 2 2
MIRT678900 TTLL12 tubulin tyrosine ligase like 12 2 2
MIRT702825 HOOK3 hook microtubule tethering protein 3 2 2
MIRT704424 CTNNBIP1 catenin beta interacting protein 1 2 2
MIRT709470 KRTAP19-1 keratin associated protein 19-1 2 2
MIRT710939 MRPL45 mitochondrial ribosomal protein L45 2 2
MIRT713306 TYRP1 tyrosinase related protein 1 2 2
MIRT716932 FAM13A family with sequence similarity 13 member A 2 2
MIRT717539 PYGO2 pygopus family PHD finger 2 2 2
MIRT718060 CYP3A5 cytochrome P450 family 3 subfamily A member 5 2 2
MIRT718934 TRIM66 tripartite motif containing 66 2 2
MIRT719770 ZNF236 zinc finger protein 236 2 2
MIRT720164 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT721280 RAD54L2 RAD54 like 2 2 2
MIRT721359 ENTHD1 ENTH domain containing 1 2 2
MIRT721506 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT721920 LINGO2 leucine rich repeat and Ig domain containing 2 2 2
MIRT722791 FUT4 fucosyltransferase 4 2 2
MIRT723933 SVOP SV2 related protein 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-2115 Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-mir-2115 Decitabine 451668 approved sensitive tissue (esopheageal cancer)
hsa-miR-2115-5p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-2115-5p Tamoxifen 2733525 NSC180973 approved sensitive cell line (LCC2)
hsa-miR-2115-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-2115-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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