pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol ZNF518B   
Synonyms -
Description zinc finger protein 518B
Transcript NM_053042   
Expression
Putative miRNA Targets on ZNF518B
3'UTR of ZNF518B
(miRNA target sites are highlighted)
>ZNF518B|NM_053042|3'UTR
   1 GTAAACAGTTACTCTTTAAAGCAAGTTATCTTTTAGTTTATTCTGGTTTGGAGTCCCTCCACCAAGATTCAGTAGAAGAA
  81 ATACAGACTGTAGAAATGAGAGGACTGCTAATTCTTCAGAACTGTAGGAATATTGGGAGCTAGGAGTCTGAACCTGAAGT
 161 ATGTGATTGGACCCCAGAATGTATTTGAAGGCTCTGAAATTGTACATGCAAATTGGTACATATGCATTTTTCTGGAGAGA
 241 GCCTGTGAAACTGAACAGATTTTCAGTGGGATCTGAGACTTTTCTTTGTTTAGCACCCCGTTTTCTGAGTACATACTGAT
 321 CTTTCATAATCCATTCAGAGGGGCAGATTGAGAATGTTTTACACATGCTCTTCATATAAATGCTACAGAAAAACCTTTGT
 401 TTTGGTGTGCACATCCATTTTGTTTTTGCTTTAATTTGTGTTCTGAGTATTTGGTGCACAATGGAAATTATATTTTCTAC
 481 TTTACTGTCTTCAATTTGGTTATAGAGAAATGGCCATTCTTTTACTCCCTCCCTGGTTTTGTAATACTCCCGAGTGTTCC
 561 GTATAGCACAAAGAGTTTTGCTTTTACTGGCCATTTTAAAGAATGTTTTCAACTGCTTGCCTGAATTTACTCCTTTCACA
 641 GCAAGTGTTAGAAGAAAGATAACATTTTCAAATACTTAGCTTTTGCTTTCTTTAAAATACATTGGTTTATGACATATGGG
 721 AAGGGAACGTACCTTTTTGCAAAGACAAAAAGAGATTACAAAAGGAAAATATCTAAAACTATTTTCTCTTTGCCCTTACC
 801 ACTCCCAGAAACATAAGTGACCAATTTAAAATGCTAGGGAACAGGCTTACAACATAGGTAAAACTCGCAAACACAGTTCA
 881 AGGTAGGCTCATAAAGTTGTGAAAAGGGTTTCATATGCCCTTTAGTTTTCATTTGGGATTCATCCAAAGACCATGGGTGG
 961 ATGCTGTCTTCTCTCTTCTTGATCCCTTTGATTCATGGACACTAGACTCCCTTTGCCATTTCTTCTGAACCGGCCCTCCT
1041 GTGGACTAGCACAACTTCCTTGCCCACTGTTTCTTCCTTTCTGTGCCTTTGAGACCCCTTAAGGTTTTCCCTCATGCGAT
1121 TACTAGAAAATGGCAGGAATCAACAAAATGGAGACCTCCCACTGTTTTTGCTAAAGTTACAGGAACACGATCCCTAGTTT
1201 TCATTGATAGTAACGCTGTTTCTAATTTGTCTTAACCACATTCATGCTTACCCTGCTGCTCAGCTTTCTCAGGGAAGCAA
1281 CTCCAGGAACACTCCTTCCACTCCCCTCTCTACCAACAGATGTCAGGACTGTCATTTATCTACACATTTGTGTTCTTTAG
1361 AAAAAGGCCCACCCCCTGCACAAGCACAGCCTCTTGGGCAGATAGGTGGCTGGGTCAGTGCTTAAGACAGGATTCTAGTC
1441 TTCACTTGCCTGTGCAGCTGGGCGCTGACCTTCCAGGTAGAGCACAGATGGCACAACCCCGAGGCAGCCCCAACTTGCAT
1521 TTCCCTCCCTCCAGGGGCTATTCCTGTCTTAGGCGATTTGTGGGGTGCAGTGAATGAAACTAAAGAGTTGTTGCACCTGA
1601 AAAAGACACCAGTGATTGTTTATTGGGTAGTCGATTGGAGACTTTGATTTTTTTTTTTTTTTTTCACATGGGAAAGTCTT
1681 AGATTCCAGTAGATGGAATTGCAATCCTTTGCAGTTTGTTCTCATTACAGATAATCAACATTTCTTTTGTATAATTCAAT
1761 ACATGATCATCAAGTTAATTGGTAAATTTTTATTGAAATTTAAAACTTGCATTTTTATATATGTGTATGTGTACACATAA
1841 AAATATTTTTTACCATATGAAAATTGCAGTAGCTAATTTTCTGATTTCCTATTTTATAATGATACATGGGCTGGAAAAAT
1921 GTAGAACGTTTTTATATTCTAGAAATTTATTTTGGAAGTACATTTTTATAAGGGTCTAATCTCACTTTTGGAAAATGAAA
2001 GCACAGGAATGATGGGGTCTGGTTTATGTGAACAAGTGAGTAGAAACCCCTTTGGATCATTTTATTACTGCATTTTTATT
2081 TGGTGCTTTTTAGGAAGTAGATCTTTGGTACCACTTCACTACGTAGAGCATTCGAAGTTTTATCCATGTTATATATTGTA
2161 CTCCTGTGGCATGAAAAATAGCTCCCAAGATATAGAGAGGAGAGGAGTGAAGAAAAGGCTGTGGTTTTTTTTTGTTTTGT
2241 TTTGTTTGCCACTTTTTTATCTCCTATTCCTCACCACATAGTGCTTTTTCCTGAAAAGCTGGACTGAGAATTGGCCTTGA
2321 ATCAGGTCAGAGTGTTAACTGTCAACATGAAGTATTTTCACTTCGCAGCATCAACTTTCAAGCATAAGTAAAAACACAAC
2401 TTGCATACTTTGATGGAGCTTAATTGTGTGAGTAGAATATGTAGCAAAGCTTTTTAGGATTTTCAGAACTAGAATACTTT
2481 TTAAGGAATTAAAAGTGTTTCTGGAAGTCAAAAATGGGAAAGCAAAAAGTAGCTGTCCTCCCTAAAGAGCTTTAGAAGAT
2561 AGCTTAACCTGTAGGTACATGTTATGAAATAAACACATTTCTAACAATACAAGGGAGTAGGGGCAGACCTGTGTTGAGTA
2641 TTTGTGTGGGTTCTTAATTTTGAAGGACCTCCAATCACTACATTTTGTTAATACTGCCAATAAAATCATTTTCAACTTAT
2721 TTTTTAAAGTAGGTTTTCTTACTTTGGTGGACCAGAAGTGAGAGATTGTTATATTTAGGATATAGGCAAATACAGTAAAA
2801 GTTAAAAAAAAAAAACCTGACCCAAAGTATACTCTGATAGACTATATTATATTCAATTTTGTATCCCCAGTCGAGAACAT
2881 CTTGTAAGCCTTCATTAAGGGCCACCTGCTGTCTGTTGAACTAGACTGAACAAAATATATTTTCTCACAAGCTCCATCCC
2961 TTTTTCTTTAGGACATGTTATATATAATCCATCTCAGAAGTTGAAGATGTGATGTTGCTCGGCCTTTGGAATAATTTTTA
3041 AATCTGTAAATGTCTATATGAGCAGAAACAAAACATTGTGTAACATGTTTTAAGCATTATTGTAATTCCTGTGTTAACAG
3121 TTTGTGTGTCTGCTGCTCTGGTTTTGAAACATGTTTGTATATAGATACAGGAGTTGGCATAAATTTTGTTAAATAAAGCA
3201 ACAAAAATTTTCTTTGCCCTTTGA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acCACGUUUUCAUUAACACCAAAAa 5'
            ||| |:||  :: ||||||||| 
Target 5' gaGTGAAGAAAAGGCTGTGGTTTTt 3'
2205 - 2229 171.00 -15.70
2
miRNA  3' acCACGUUUUCAUUAACACCAAAAa 5'
            |||::   |  : | ||||||| 
Target 5' ttGTGTGTCTGCTGCTCTGGTTTTg 3'
3122 - 3146 147.00 -6.05
3
miRNA  3' accacGUUUUCAUUA----ACACCAAAaa 5'
               ||::| |:||    | ||||||  
Target 5' aagcaCAGGAATGATGGGGTCTGGTTTat 3'
1999 - 2027 138.00 -6.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30021804 36 COSMIC
COSN512275 36 COSMIC
COSN30486218 47 COSMIC
COSN30521967 51 COSMIC
COSN30178880 56 COSMIC
COSN20504085 78 COSMIC
COSN31599764 80 COSMIC
COSN31564393 103 COSMIC
COSN30171365 107 COSMIC
COSN5547757 406 COSMIC
COSN32063664 552 COSMIC
COSN32057657 709 COSMIC
COSN20926274 729 COSMIC
COSN28316291 796 COSMIC
COSN27563661 816 COSMIC
COSN31962238 923 COSMIC
COSN16587282 1117 COSMIC
COSN9897882 1262 COSMIC
COSN5006968 1323 COSMIC
COSN17630008 1360 COSMIC
COSN31532534 1457 COSMIC
COSN6788365 1462 COSMIC
COSN28775359 1500 COSMIC
COSN7721704 1546 COSMIC
COSN31535230 1617 COSMIC
COSN20099816 1647 COSMIC
COSN31530761 1652 COSMIC
COSN20316711 1672 COSMIC
COSN20099813 1766 COSMIC
COSN5050189 1980 COSMIC
COSN31593481 2005 COSMIC
COSN28802103 2028 COSMIC
COSN26634453 2052 COSMIC
COSN28201191 2100 COSMIC
COSN20099810 2122 COSMIC
COSN31515628 2134 COSMIC
COSN30163765 2229 COSMIC
COSN1284534 2361 COSMIC
COSN31542971 2547 COSMIC
COSN32056426 2617 COSMIC
COSN31548187 2703 COSMIC
COSN32061561 2717 COSMIC
COSN20099806 2803 COSMIC
COSN20099808 2804 COSMIC
COSN20099805 2816 COSMIC
COSN31601088 3025 COSMIC
rs34208161 622 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1156475314 3 dbSNP
rs1195049134 4 dbSNP
rs765174567 5 dbSNP
rs757233982 8 dbSNP
rs1411009148 12 dbSNP
rs369989405 17 dbSNP
rs1160284342 18 dbSNP
rs776598481 29 dbSNP
rs746514512 30 dbSNP
rs1274347581 32 dbSNP
rs1386076717 33 dbSNP
rs1334478608 34 dbSNP
rs773064584 36 dbSNP
rs1052543893 39 dbSNP
rs375833715 39 dbSNP
rs749679905 40 dbSNP
rs1446578943 41 dbSNP
rs1274082132 42 dbSNP
rs1286680852 46 dbSNP
rs935138704 53 dbSNP
rs1296799344 55 dbSNP
rs1262796830 58 dbSNP
rs1354903079 59 dbSNP
rs1209715444 62 dbSNP
rs1439050925 65 dbSNP
rs901034848 69 dbSNP
rs1351301358 75 dbSNP
rs3217 78 dbSNP
rs1250593057 80 dbSNP
rs550555941 84 dbSNP
rs1183725114 86 dbSNP
rs535765503 102 dbSNP
rs910860694 103 dbSNP
rs1161917281 109 dbSNP
rs983769842 111 dbSNP
rs747103034 114 dbSNP
rs146729373 117 dbSNP
rs1366348735 125 dbSNP
rs546850889 126 dbSNP
rs1478138167 132 dbSNP
rs886419860 133 dbSNP
rs1306199943 139 dbSNP
rs1372880980 140 dbSNP
rs1444297573 141 dbSNP
rs1339054404 146 dbSNP
rs931005430 147 dbSNP
rs918323978 148 dbSNP
rs1049087506 149 dbSNP
rs930859543 150 dbSNP
rs922225230 154 dbSNP
rs1253871865 159 dbSNP
rs1221059626 165 dbSNP
rs1467200473 168 dbSNP
rs1260012764 170 dbSNP
rs528311807 176 dbSNP
rs1184200830 182 dbSNP
rs777644601 187 dbSNP
rs112070873 190 dbSNP
rs982354493 192 dbSNP
rs1276828276 199 dbSNP
rs1166829164 200 dbSNP
rs1353963137 201 dbSNP
rs1221345134 206 dbSNP
rs944883319 207 dbSNP
rs1300083232 209 dbSNP
rs1400598982 211 dbSNP
rs113484865 213 dbSNP
rs1337735680 215 dbSNP
rs1385620388 216 dbSNP
rs772185769 223 dbSNP
rs1275075503 226 dbSNP
rs970054555 227 dbSNP
rs1307537341 232 dbSNP
rs1435232064 232 dbSNP
rs191546540 234 dbSNP
rs552439192 235 dbSNP
rs1482692774 238 dbSNP
rs1332866386 250 dbSNP
rs1010891597 254 dbSNP
rs530867860 255 dbSNP
rs893839525 259 dbSNP
rs143327023 266 dbSNP
rs1168169412 273 dbSNP
rs1000056824 282 dbSNP
rs900964574 283 dbSNP
rs1469420712 284 dbSNP
rs375966003 284 dbSNP
rs1041284018 288 dbSNP
rs942609411 288 dbSNP
rs955813452 296 dbSNP
rs1033079536 298 dbSNP
rs539859115 299 dbSNP
rs1048329462 300 dbSNP
rs1383432789 305 dbSNP
rs1298478166 314 dbSNP
rs1322438184 325 dbSNP
rs1223697154 326 dbSNP
rs930972909 330 dbSNP
rs918293097 334 dbSNP
rs1215063729 336 dbSNP
rs1242617118 336 dbSNP
rs750872147 341 dbSNP
rs1486773160 342 dbSNP
rs1199398413 348 dbSNP
rs1265306856 350 dbSNP
rs1036703331 365 dbSNP
rs541785498 367 dbSNP
rs1177386200 370 dbSNP
rs1431992874 371 dbSNP
rs978464814 393 dbSNP
rs1158764148 397 dbSNP
rs1346315411 405 dbSNP
rs938440316 405 dbSNP
rs1291312492 407 dbSNP
rs970357120 411 dbSNP
rs139826204 412 dbSNP
rs1405223011 413 dbSNP
rs1284800407 417 dbSNP
rs982703906 436 dbSNP
rs969605485 437 dbSNP
rs111308629 438 dbSNP
rs186751360 447 dbSNP
rs1219219892 449 dbSNP
rs1289740743 454 dbSNP
rs1490197165 475 dbSNP
rs1200495441 477 dbSNP
rs183184820 485 dbSNP
rs1313163070 486 dbSNP
rs1278425834 488 dbSNP
rs533793526 493 dbSNP
rs895636515 494 dbSNP
rs1177022078 499 dbSNP
rs559102444 503 dbSNP
rs1004965128 505 dbSNP
rs1403003745 512 dbSNP
rs886535655 513 dbSNP
rs1163254695 514 dbSNP
rs1049494806 521 dbSNP
rs781596322 523 dbSNP
rs572753854 527 dbSNP
rs930681416 529 dbSNP
rs1364488369 531 dbSNP
rs1424726025 533 dbSNP
rs900724228 536 dbSNP
rs999582801 538 dbSNP
rs1440970750 549 dbSNP
rs539169548 551 dbSNP
rs754864199 552 dbSNP
rs778672616 555 dbSNP
rs537040997 557 dbSNP
rs1223330701 559 dbSNP
rs749054681 560 dbSNP
rs780164895 561 dbSNP
rs575377668 565 dbSNP
rs1233858072 567 dbSNP
rs1182352232 573 dbSNP
rs889651203 573 dbSNP
rs1048298595 576 dbSNP
rs1445694619 586 dbSNP
rs1164964901 587 dbSNP
rs1387730792 589 dbSNP
rs1175180163 593 dbSNP
rs557018205 620 dbSNP
rs1382455705 621 dbSNP
rs34208161 622 dbSNP
rs1037120483 634 dbSNP
rs1445565234 635 dbSNP
rs1335766656 641 dbSNP
rs934376505 645 dbSNP
rs938419381 647 dbSNP
rs928353509 648 dbSNP
rs925726699 654 dbSNP
rs1317313611 658 dbSNP
rs978808403 659 dbSNP
rs948210497 670 dbSNP
rs1273961879 674 dbSNP
rs568050090 678 dbSNP
rs749954539 679 dbSNP
rs1202175966 685 dbSNP
rs1242876066 685 dbSNP
rs1462170064 685 dbSNP
rs1185940654 694 dbSNP
rs1370880600 695 dbSNP
rs546620438 696 dbSNP
rs916788455 698 dbSNP
rs1421217965 699 dbSNP
rs1467868829 700 dbSNP
rs534915964 700 dbSNP
rs1175473354 702 dbSNP
rs1406515853 703 dbSNP
rs1237378461 704 dbSNP
rs151061001 709 dbSNP
rs1318456630 711 dbSNP
rs751220970 717 dbSNP
rs958284527 718 dbSNP
rs1270778017 720 dbSNP
rs959982003 723 dbSNP
rs1015404565 728 dbSNP
rs1004052713 729 dbSNP
rs1324674975 731 dbSNP
rs112969061 732 dbSNP
rs886500696 733 dbSNP
rs763695258 735 dbSNP
rs1207815493 747 dbSNP
rs1446866009 750 dbSNP
rs1193325514 751 dbSNP
rs749607474 752 dbSNP
rs1243298743 754 dbSNP
rs1479281733 756 dbSNP
rs34507778 766 dbSNP
rs1240335724 767 dbSNP
rs1315829725 771 dbSNP
rs1027753623 772 dbSNP
rs1470826198 776 dbSNP
rs142822465 781 dbSNP
rs978479897 785 dbSNP
rs1401176000 788 dbSNP
rs374318610 790 dbSNP
rs900482001 791 dbSNP
rs1020110386 792 dbSNP
rs1403376209 794 dbSNP
rs1282876683 800 dbSNP
rs539776169 806 dbSNP
rs1009096101 807 dbSNP
rs1412730735 813 dbSNP
rs1350622638 816 dbSNP
rs890715220 823 dbSNP
rs1285795650 835 dbSNP
rs1053176495 842 dbSNP
rs1489635943 847 dbSNP
rs934862169 852 dbSNP
rs995356817 853 dbSNP
rs925663595 860 dbSNP
rs1036971475 865 dbSNP
rs530925396 866 dbSNP
rs867920098 867 dbSNP
rs563411446 869 dbSNP
rs1362269138 872 dbSNP
rs776920947 873 dbSNP
rs569149504 874 dbSNP
rs530069185 875 dbSNP
rs948497439 879 dbSNP
rs190839123 883 dbSNP
rs1424449309 893 dbSNP
rs895282855 900 dbSNP
rs541407395 903 dbSNP
rs1281768032 906 dbSNP
rs1186372882 913 dbSNP
rs915574355 915 dbSNP
rs1221100890 917 dbSNP
rs1489477180 919 dbSNP
rs577420035 920 dbSNP
rs1193694874 924 dbSNP
rs1249604112 925 dbSNP
rs1438177128 930 dbSNP
rs1216331109 931 dbSNP
rs1443889948 934 dbSNP
rs1163035384 936 dbSNP
rs1385922925 951 dbSNP
rs992503776 952 dbSNP
rs978402422 953 dbSNP
rs1392349266 956 dbSNP
rs959907793 961 dbSNP
rs908479447 966 dbSNP
rs1485378629 967 dbSNP
rs766875046 975 dbSNP
rs1315200098 976 dbSNP
rs761234235 977 dbSNP
rs952563980 996 dbSNP
rs1027257529 998 dbSNP
rs1339590157 999 dbSNP
rs565353719 1001 dbSNP
rs1460855520 1003 dbSNP
rs1184101579 1007 dbSNP
rs1243900055 1009 dbSNP
rs1026753754 1025 dbSNP
rs965190939 1031 dbSNP
rs1372727349 1038 dbSNP
rs973856954 1039 dbSNP
rs569706927 1044 dbSNP
rs1292635312 1047 dbSNP
rs1452601485 1048 dbSNP
rs557236998 1051 dbSNP
rs1380779135 1054 dbSNP
rs148513455 1055 dbSNP
rs1294151777 1057 dbSNP
rs147448271 1058 dbSNP
rs1298647415 1060 dbSNP
rs1220066007 1062 dbSNP
rs557128337 1064 dbSNP
rs1002830339 1066 dbSNP
rs748224985 1066 dbSNP
rs1204292199 1069 dbSNP
rs1053311414 1070 dbSNP
rs1484815330 1073 dbSNP
rs906822237 1078 dbSNP
rs999540097 1085 dbSNP
rs1295456196 1098 dbSNP
rs1458501106 1104 dbSNP
rs1022636904 1111 dbSNP
rs1469596929 1114 dbSNP
rs904669494 1117 dbSNP
rs1012642626 1119 dbSNP
rs143325696 1126 dbSNP
rs1287836584 1137 dbSNP
rs371512892 1138 dbSNP
rs1163417623 1146 dbSNP
rs574534300 1153 dbSNP
rs1054235976 1155 dbSNP
rs1479122311 1156 dbSNP
rs1344414392 1160 dbSNP
rs948466901 1161 dbSNP
rs1303087388 1162 dbSNP
rs1315082752 1163 dbSNP
rs1214955527 1165 dbSNP
rs902721761 1173 dbSNP
rs765927283 1188 dbSNP
rs774472047 1189 dbSNP
rs944313371 1193 dbSNP
rs1056796701 1194 dbSNP
rs1259263854 1195 dbSNP
rs938342872 1199 dbSNP
rs1480192070 1205 dbSNP
rs908238356 1206 dbSNP
rs982703013 1207 dbSNP
rs1488526748 1208 dbSNP
rs952778079 1209 dbSNP
rs768954521 1214 dbSNP
rs1421001387 1215 dbSNP
rs1319963325 1222 dbSNP
rs1364607113 1231 dbSNP
rs552887847 1234 dbSNP
rs528113566 1236 dbSNP
rs1276446093 1237 dbSNP
rs975659095 1239 dbSNP
rs1223215308 1246 dbSNP
rs1355689235 1251 dbSNP
rs1242409188 1252 dbSNP
rs1289629675 1254 dbSNP
rs1490253551 1256 dbSNP
rs964785254 1268 dbSNP
rs1324427691 1270 dbSNP
rs530501231 1273 dbSNP
rs1248889433 1276 dbSNP
rs1017661025 1279 dbSNP
rs974160631 1280 dbSNP
rs1176931174 1283 dbSNP
rs749110838 1284 dbSNP
rs1442045682 1289 dbSNP
rs1008823097 1292 dbSNP
rs368808046 1295 dbSNP
rs10938799 1303 dbSNP
rs999112098 1304 dbSNP
rs1467222327 1312 dbSNP
rs547023991 1324 dbSNP
rs186501304 1330 dbSNP
rs1379060194 1331 dbSNP
rs1210891089 1332 dbSNP
rs1450291530 1333 dbSNP
rs904782966 1342 dbSNP
rs1167798043 1343 dbSNP
rs4422413 1344 dbSNP
rs1229165924 1345 dbSNP
rs569495282 1347 dbSNP
rs1200571410 1361 dbSNP
rs894202236 1370 dbSNP
rs1204306306 1375 dbSNP
rs548315900 1381 dbSNP
rs1012575380 1389 dbSNP
rs1182250250 1389 dbSNP
rs1458676025 1390 dbSNP
rs772037137 1399 dbSNP
rs1164429120 1406 dbSNP
rs1416948347 1411 dbSNP
rs140972700 1413 dbSNP
rs1337218258 1414 dbSNP
rs572723512 1418 dbSNP
rs1170903870 1421 dbSNP
rs998608818 1422 dbSNP
rs1450447714 1425 dbSNP
rs1257602592 1437 dbSNP
rs566237426 1439 dbSNP
rs902648237 1451 dbSNP
rs1042575875 1456 dbSNP
rs1008874283 1457 dbSNP
rs565942267 1463 dbSNP
rs1377693360 1464 dbSNP
rs547736704 1467 dbSNP
rs1328780715 1470 dbSNP
rs1408658207 1473 dbSNP
rs773970859 1478 dbSNP
rs768957271 1479 dbSNP
rs1434463066 1498 dbSNP
rs532717908 1500 dbSNP
rs919840065 1501 dbSNP
rs1193891774 1504 dbSNP
rs975249724 1514 dbSNP
rs919965270 1518 dbSNP
rs942549411 1523 dbSNP
rs1180448672 1524 dbSNP
rs1038377371 1529 dbSNP
rs1436077446 1532 dbSNP
rs912423358 1533 dbSNP
rs987496652 1537 dbSNP
rs940126235 1548 dbSNP
rs954830041 1554 dbSNP
rs1430358432 1558 dbSNP
rs370317192 1563 dbSNP
rs1346820603 1565 dbSNP
rs565600342 1567 dbSNP
rs1282990666 1582 dbSNP
rs1242503859 1588 dbSNP
rs544112876 1590 dbSNP
rs531985293 1595 dbSNP
rs971660851 1596 dbSNP
rs968975600 1606 dbSNP
rs1440067797 1607 dbSNP
rs991444246 1608 dbSNP
rs1264892948 1609 dbSNP
rs1022310191 1615 dbSNP
rs1377970357 1618 dbSNP
rs1478992660 1621 dbSNP
rs1156741901 1622 dbSNP
rs1342829651 1624 dbSNP
rs545827786 1625 dbSNP
rs1382954022 1626 dbSNP
rs1419183252 1627 dbSNP
rs1298810629 1628 dbSNP
rs1013198537 1629 dbSNP
rs1335385990 1630 dbSNP
rs1414583114 1633 dbSNP
rs561467095 1637 dbSNP
rs1332008495 1638 dbSNP
rs1236155033 1640 dbSNP
rs1373954820 1641 dbSNP
rs866540370 1643 dbSNP
rs894630658 1645 dbSNP
rs1290116938 1646 dbSNP
rs749404711 1646 dbSNP
rs80158718 1647 dbSNP
rs1408259506 1648 dbSNP
rs76382787 1648 dbSNP
rs1157526747 1649 dbSNP
rs76570166 1649 dbSNP
rs1287485163 1658 dbSNP
rs1489750403 1659 dbSNP
rs1187552861 1660 dbSNP
rs1491272579 1664 dbSNP
rs757370818 1664 dbSNP
rs1159351556 1665 dbSNP
rs1179323968 1665 dbSNP
rs1358340558 1665 dbSNP
rs1425499840 1665 dbSNP
rs1453099663 1665 dbSNP
rs1491574144 1665 dbSNP
rs35322882 1665 dbSNP
rs71649567 1665 dbSNP
rs1279752556 1666 dbSNP
rs879161064 1666 dbSNP
rs1244868902 1671 dbSNP
rs1032688150 1672 dbSNP
rs1357941529 1676 dbSNP
rs886864692 1686 dbSNP
rs112374580 1695 dbSNP
rs1046687676 1704 dbSNP
rs1485226461 1721 dbSNP
rs1442840089 1729 dbSNP
rs998577709 1730 dbSNP
rs1218508052 1736 dbSNP
rs1488780838 1738 dbSNP
rs1459595483 1739 dbSNP
rs1166571010 1740 dbSNP
rs1399990293 1741 dbSNP
rs1466666579 1744 dbSNP
rs1333941746 1749 dbSNP
rs967174447 1759 dbSNP
rs1283796071 1762 dbSNP
rs930991045 1763 dbSNP
rs1394948339 1767 dbSNP
rs199938307 1768 dbSNP
rs35697212 1773 dbSNP
rs35914280 1773 dbSNP
rs1257232555 1775 dbSNP
rs574435995 1779 dbSNP
rs1040012212 1781 dbSNP
rs1200512503 1786 dbSNP
rs1008385698 1789 dbSNP
rs180712189 1790 dbSNP
rs1465157852 1791 dbSNP
rs891320309 1792 dbSNP
rs1181377108 1809 dbSNP
rs756749443 1810 dbSNP
rs1256927292 1811 dbSNP
rs1425825926 1819 dbSNP
rs1300505133 1823 dbSNP
rs942643120 1828 dbSNP
rs1423429754 1829 dbSNP
rs1478362292 1833 dbSNP
rs912390690 1836 dbSNP
rs1345469366 1837 dbSNP
rs1404572158 1840 dbSNP
rs1465934419 1840 dbSNP
rs1049962091 1842 dbSNP
rs997056213 1844 dbSNP
rs1317139408 1846 dbSNP
rs1277164729 1848 dbSNP
rs1398484903 1852 dbSNP
rs540992497 1855 dbSNP
rs1281087821 1856 dbSNP
rs933369957 1857 dbSNP
rs924710340 1858 dbSNP
rs1038346009 1861 dbSNP
rs940076380 1866 dbSNP
rs547688896 1873 dbSNP
rs576739143 1876 dbSNP
rs908605939 1877 dbSNP
rs1203409103 1878 dbSNP
rs1046268398 1880 dbSNP
rs189100621 1881 dbSNP
rs915750422 1886 dbSNP
rs1415581300 1888 dbSNP
rs1196320578 1898 dbSNP
rs1195634838 1901 dbSNP
rs1177420457 1905 dbSNP
rs1378915296 1909 dbSNP
rs969112107 1912 dbSNP
rs763748177 1927 dbSNP
rs368020818 1928 dbSNP
rs1296999644 1932 dbSNP
rs1360794940 1937 dbSNP
rs1401439321 1939 dbSNP
rs1301106546 1943 dbSNP
rs957288698 1974 dbSNP
rs925587603 1976 dbSNP
rs977098320 1986 dbSNP
rs536938673 2003 dbSNP
rs1021651890 2004 dbSNP
rs1488765573 2005 dbSNP
rs967479720 2010 dbSNP
rs1245409973 2014 dbSNP
rs991739064 2015 dbSNP
rs958977119 2016 dbSNP
rs1035827280 2020 dbSNP
rs57723486 2028 dbSNP
rs563636733 2034 dbSNP
rs1028454325 2047 dbSNP
rs28553891 2052 dbSNP
rs995295633 2055 dbSNP
rs898135294 2058 dbSNP
rs1017164110 2062 dbSNP
rs1280624042 2064 dbSNP
rs1004203578 2077 dbSNP
rs887147142 2078 dbSNP
rs1295027017 2082 dbSNP
rs1361652350 2105 dbSNP
rs1039409245 2108 dbSNP
rs1006751980 2113 dbSNP
rs1445923134 2114 dbSNP
rs1308667913 2115 dbSNP
rs1354496747 2121 dbSNP
rs1045777728 2122 dbSNP
rs58720271 2123 dbSNP
rs35830763 2125 dbSNP
rs112023205 2126 dbSNP
rs76923646 2126 dbSNP
rs140427420 2127 dbSNP
rs894285583 2128 dbSNP
rs202015785 2129 dbSNP
rs561634836 2133 dbSNP
rs566137920 2134 dbSNP
rs1238323002 2135 dbSNP
rs1441021476 2137 dbSNP
rs1181143534 2138 dbSNP
rs1412664047 2144 dbSNP
rs1050863122 2146 dbSNP
rs1405538136 2148 dbSNP
rs147310858 2152 dbSNP
rs1352508936 2158 dbSNP
rs1465097038 2161 dbSNP
rs923827535 2166 dbSNP
rs1378946126 2172 dbSNP
rs925849303 2173 dbSNP
rs1378784717 2179 dbSNP
rs1042178471 2181 dbSNP
rs947535625 2183 dbSNP
rs1292555587 2186 dbSNP
rs1316434030 2189 dbSNP
rs1410324661 2190 dbSNP
rs1259276998 2192 dbSNP
rs28519672 2193 dbSNP
rs1184544640 2199 dbSNP
rs149611810 2207 dbSNP
rs751983520 2208 dbSNP
rs1183230460 2210 dbSNP
rs1421283627 2215 dbSNP
rs1477380474 2223 dbSNP
rs550543876 2224 dbSNP
rs928890172 2225 dbSNP
rs987202851 2228 dbSNP
rs531998103 2229 dbSNP
rs1358649440 2230 dbSNP
rs1205758067 2233 dbSNP
rs1028423226 2234 dbSNP
rs1279187845 2234 dbSNP
rs199639225 2234 dbSNP
rs975533467 2234 dbSNP
rs962879565 2235 dbSNP
rs1307301353 2237 dbSNP
rs1017183429 2239 dbSNP
rs1277378151 2242 dbSNP
rs1442480615 2243 dbSNP
rs1211543534 2244 dbSNP
rs1004874706 2248 dbSNP
rs1425469943 2248 dbSNP
rs887082253 2248 dbSNP
rs1171913751 2249 dbSNP
rs561477596 2252 dbSNP
rs1014319121 2253 dbSNP
rs1314790232 2255 dbSNP
rs1369339930 2259 dbSNP
rs540297803 2259 dbSNP
rs1025833492 2262 dbSNP
rs995659989 2264 dbSNP
rs374535224 2265 dbSNP
rs529771168 2266 dbSNP
rs1055919152 2269 dbSNP
rs1017859609 2270 dbSNP
rs935814590 2272 dbSNP
rs904394229 2274 dbSNP
rs1368060358 2275 dbSNP
rs1216882404 2278 dbSNP
rs1333295466 2289 dbSNP
rs1265136248 2290 dbSNP
rs115417172 2299 dbSNP
rs945960306 2301 dbSNP
rs911532021 2303 dbSNP
rs987559774 2305 dbSNP
rs571722783 2313 dbSNP
rs60441438 2321 dbSNP
rs73810866 2323 dbSNP
rs116284607 2329 dbSNP
rs1419395962 2333 dbSNP
rs999423616 2338 dbSNP
rs902342181 2341 dbSNP
rs558126035 2342 dbSNP
rs1043602011 2345 dbSNP
rs1387338742 2346 dbSNP
rs1173206794 2348 dbSNP
rs947425869 2361 dbSNP
rs914664924 2364 dbSNP
rs1055780661 2365 dbSNP
rs937337398 2366 dbSNP
rs1017528644 2369 dbSNP
rs543313750 2374 dbSNP
rs866354389 2376 dbSNP
rs200256771 2377 dbSNP
rs34372770 2377 dbSNP
rs72600651 2377 dbSNP
rs1177841305 2379 dbSNP
rs575891241 2381 dbSNP
rs755650223 2384 dbSNP
rs531590145 2389 dbSNP
rs1453299576 2391 dbSNP
rs769007515 2400 dbSNP
rs34844363 2403 dbSNP
rs78946091 2405 dbSNP
rs536476018 2408 dbSNP
rs1439176713 2411 dbSNP
rs1179260523 2416 dbSNP
rs1365792015 2417 dbSNP
rs767589105 2419 dbSNP
rs1280600166 2424 dbSNP
rs958726787 2434 dbSNP
rs761619337 2437 dbSNP
rs1034429606 2443 dbSNP
rs1463530040 2445 dbSNP
rs1000286419 2459 dbSNP
rs974274281 2463 dbSNP
rs1345273788 2464 dbSNP
rs1446929582 2468 dbSNP
rs575649110 2471 dbSNP
rs572131937 2472 dbSNP
rs1372584628 2478 dbSNP
rs554282691 2484 dbSNP
rs1296330653 2486 dbSNP
rs1449993152 2492 dbSNP
rs1375766111 2495 dbSNP
rs1312514277 2496 dbSNP
rs371016453 2505 dbSNP
rs1458126281 2506 dbSNP
rs1433160035 2514 dbSNP
rs554715943 2515 dbSNP
rs1159979234 2517 dbSNP
rs1252728837 2518 dbSNP
rs1422324929 2532 dbSNP
rs1418560175 2535 dbSNP
rs550160779 2536 dbSNP
rs890351113 2538 dbSNP
rs1476394842 2539 dbSNP
rs745645560 2539 dbSNP
rs1168933103 2544 dbSNP
rs955024914 2553 dbSNP
rs1400246244 2554 dbSNP
rs1184035182 2559 dbSNP
rs1466583958 2569 dbSNP
rs1299428813 2575 dbSNP
rs1029324812 2579 dbSNP
rs931641923 2581 dbSNP
rs536044224 2584 dbSNP
rs1356896502 2597 dbSNP
rs567930282 2601 dbSNP
rs1277277312 2611 dbSNP
rs1318581327 2613 dbSNP
rs999842631 2622 dbSNP
rs770843127 2623 dbSNP
rs1253205158 2631 dbSNP
rs1482325638 2649 dbSNP
rs1209169807 2650 dbSNP
rs1484508357 2652 dbSNP
rs1486750007 2653 dbSNP
rs1022509691 2656 dbSNP
rs549674523 2657 dbSNP
rs1192017071 2666 dbSNP
rs150109128 2669 dbSNP
rs1478475116 2673 dbSNP
rs76978600 2680 dbSNP
rs893181255 2682 dbSNP
rs777329740 2690 dbSNP
rs1304790207 2694 dbSNP
rs1465110071 2701 dbSNP
rs867508104 2705 dbSNP
rs1235001846 2706 dbSNP
rs547515970 2708 dbSNP
rs1355998920 2710 dbSNP
rs1292522371 2720 dbSNP
rs1340890201 2721 dbSNP
rs144807639 2722 dbSNP
rs34982871 2722 dbSNP
rs1299110973 2733 dbSNP
rs937430680 2738 dbSNP
rs367828426 2741 dbSNP
rs1281106387 2745 dbSNP
rs1045794565 2766 dbSNP
rs1214724194 2771 dbSNP
rs757886881 2773 dbSNP
rs1289621864 2775 dbSNP
rs918846049 2777 dbSNP
rs1453147035 2778 dbSNP
rs1488827565 2779 dbSNP
rs974621130 2784 dbSNP
rs866930817 2792 dbSNP
rs373645551 2793 dbSNP
rs752394199 2797 dbSNP
rs1475857408 2802 dbSNP
rs532064161 2803 dbSNP
rs1186311512 2804 dbSNP
rs376378989 2804 dbSNP
rs773173684 2804 dbSNP
rs1478979082 2811 dbSNP
rs1263447132 2814 dbSNP
rs11552369 2816 dbSNP
rs1157690037 2816 dbSNP
rs1360696058 2816 dbSNP
rs1417550758 2816 dbSNP
rs1491077809 2816 dbSNP
rs34932543 2816 dbSNP
rs369662610 2816 dbSNP
rs370155124 2816 dbSNP
rs386399229 2816 dbSNP
rs878892014 2816 dbSNP
rs200204334 2817 dbSNP
rs1205286382 2818 dbSNP
rs1317698927 2824 dbSNP
rs1485271428 2825 dbSNP
rs535293113 2828 dbSNP
rs28427256 2832 dbSNP
rs1335461282 2839 dbSNP
rs1488462591 2844 dbSNP
rs1194800132 2854 dbSNP
rs1254398286 2854 dbSNP
rs560884330 2856 dbSNP
rs1029251087 2860 dbSNP
rs977788808 2861 dbSNP
rs1231238593 2867 dbSNP
rs1380552857 2871 dbSNP
rs1327942912 2872 dbSNP
rs1162482291 2873 dbSNP
rs763294820 2875 dbSNP
rs1381917440 2878 dbSNP
rs574546810 2881 dbSNP
rs1328087485 2888 dbSNP
rs756462159 2894 dbSNP
rs1022224818 2901 dbSNP
rs1397936052 2906 dbSNP
rs1444689024 2917 dbSNP
rs1011268948 2918 dbSNP
rs894960945 2921 dbSNP
rs1311110904 2922 dbSNP
rs1321481308 2927 dbSNP
rs1394414280 2927 dbSNP
rs780342937 2928 dbSNP
rs1456788451 2930 dbSNP
rs542548658 2936 dbSNP
rs1232923972 2937 dbSNP
rs1001610693 2945 dbSNP
rs907292615 2948 dbSNP
rs1046103063 2951 dbSNP
rs572252873 2954 dbSNP
rs1373944893 2960 dbSNP
rs9565 2966 dbSNP
rs996057599 2969 dbSNP
rs553642311 2970 dbSNP
rs1166772693 2978 dbSNP
rs1038601263 2980 dbSNP
rs1037346794 2981 dbSNP
rs941721511 2983 dbSNP
rs941648967 2984 dbSNP
rs907602782 2987 dbSNP
rs1047506285 2988 dbSNP
rs1444708360 2995 dbSNP
rs1259226065 3002 dbSNP
rs911384850 3006 dbSNP
rs111599809 3012 dbSNP
rs79739826 3020 dbSNP
rs922374783 3021 dbSNP
rs1295478824 3029 dbSNP
rs556619751 3036 dbSNP
rs145201410 3041 dbSNP
rs958959346 3051 dbSNP
rs1207339828 3052 dbSNP
rs770162387 3052 dbSNP
rs1236561685 3055 dbSNP
rs1485764822 3056 dbSNP
rs140409073 3062 dbSNP
rs1260722913 3063 dbSNP
rs186195624 3072 dbSNP
rs1226417446 3074 dbSNP
rs368103279 3077 dbSNP
rs914915025 3079 dbSNP
rs1305830041 3080 dbSNP
rs534219873 3082 dbSNP
rs764329693 3084 dbSNP
rs1173983628 3087 dbSNP
rs978740498 3100 dbSNP
rs1415596656 3102 dbSNP
rs1315267915 3106 dbSNP
rs112775145 3108 dbSNP
rs144059616 3115 dbSNP
rs567056389 3122 dbSNP
rs988951268 3123 dbSNP
rs1167762909 3124 dbSNP
rs1460773254 3130 dbSNP
rs745968812 3133 dbSNP
rs551641959 3134 dbSNP
rs1277263916 3141 dbSNP
rs954665955 3150 dbSNP
rs1387947943 3153 dbSNP
rs1030134337 3154 dbSNP
rs1487847098 3160 dbSNP
rs1193550937 3168 dbSNP
rs959307689 3168 dbSNP
rs900408597 3171 dbSNP
rs138757270 3177 dbSNP
rs1394554911 3182 dbSNP
rs61413590 3183 dbSNP
rs1003379542 3198 dbSNP
rs34045021 3198 dbSNP
rs35369596 3198 dbSNP
rs199736062 3199 dbSNP
rs1047892511 3203 dbSNP
rs763103371 3216 dbSNP
rs568962427 3219 dbSNP
rs564668134 3223 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acCACGUUUUCAUUAACACcaaaaa 5'
            ||| |:||  :: ||||      
Target 5' gaGUGAAGAAAAGGCUGUG------ 3'
5 - 23
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acCACGUUUUCAUUAACACCAAAAa 5'
            ||| |:||  :: ||||||||| 
Target 5' gaGUGAAGAAAAGGCUGUGGUUUUu 3'
6 - 30
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000326756.3 | 3UTR | AGAGGAGUGAAGAAAAGGCUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000326756.3 | 3UTR | GAGAGGAGUGAAGAAAAGGCUGUGGUUUUUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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