pre-miRNA Information
pre-miRNA hsa-mir-1303   
Genomic Coordinates chr5: 154685776 - 154685861
Synonyms MIRN1303, hsa-mir-1303, MIR1303
Description Homo sapiens miR-1303 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1303
Sequence 52| UUUAGAGACGGGGUCUUGCUCU |73
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 5 + 154685830 23291724, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs370437195 6 dbSNP
rs1195001383 7 dbSNP
rs546614687 8 dbSNP
rs762579883 9 dbSNP
rs766041486 10 dbSNP
rs751079975 12 dbSNP
rs888516744 13 dbSNP
rs566454487 14 dbSNP
rs766973220 15 dbSNP
rs1474274822 17 dbSNP
rs753222192 18 dbSNP
rs1230907999 19 dbSNP
rs756552638 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF384   
Synonyms CAGH1, CAGH1A, CIZ, ERDA2, NMP4, NP, TNRC1
Description zinc finger protein 384
Transcript NM_001039920   
Other Transcripts NM_001135734 , NM_133476   
Expression
Putative miRNA Targets on ZNF384
3'UTR of ZNF384
(miRNA target sites are highlighted)
>ZNF384|NM_001039920|3'UTR
   1 AGATCCGTGCTGCCACCCACTGGGAAGAGGAAGAAGTAGTCCTGGTGTCTTCTTTCTCCAACTCTTGGTGGGAAAAGTCC
  81 TTTTCTTCCTTGACAGGCCTTGGCTCCATCTCCTTGGGCCTCTGTCACGGCTTTCCTTCACAGGATACCATCCTTTTTCT
 161 GAACTCTTCTTCAAAAGGAACATCAGCCCTCCTGATTGCAAAGGAATACTGAGCTGATGGTGTCATCCAGCAGCCTCCCC
 241 TCCCAAGCAAAGCTTCTAAAACTGGGGGTCGGTGCTCAAGGGAAGGATTTGCTATGACCTCATAGAACCTTGTCCAGTGT
 321 GGCCACTTACCCTATCCTTACCCTCCTTATCCTCAAAGTTTGGGCTGATGTAAGACTAGAGGCTGGCCCTCCCAGATAAC
 401 AGAGAAAAGGGAGCCCCAAATGCAACCAGCCTCTTGTTCTATTCTTGCCTGCAAAAGAACAGAGGTTTCTCAAATGCCTC
 481 AGTCCCTGAGAGCCATTTCTTCCCCTACATCGTCTCACTTTGCTTCCTATTGACTGCTGGTAGAAGGAGATTTGGGGTAG
 561 GGGCTAGACCTCCTTTTATTTGAAGGGGGCAAGGGCTGAGATGTGGTCCCCAAGGGGCCAGAAATTCCCAAGTTGGTCAC
 641 AGGTGGCTTAGAAGTGTGTGTTATGGTTTTACGGATTTCCTTGAAGCCTCTCTCCTTCTCTGCCTACAAAGACCCTATAC
 721 TCTCAGTCTCCCCAACCCACCCCCAAGGAGCTGTGGGAGGCTTTGTGTTATCTGTGAAACTCCAAAACAGGGGTGTTGCG
 801 GAGAAGGGAGAGTTCAAGGCAAACGCAAGGACTGGACTTAGCTCCCTAGGTGCCACAGTCAGATGCCGGACACGGATTTA
 881 TATATAAATATATATATATAAATATATTATACTCACTCATCACGGCCATCTTTGTTGTAACCATTTCTGTGTTTATAAAT
 961 GCATTATCTCTGAGAATTTTCATATTTGATGTTTTGTTTATTTTTGTCCTTTTTTTCCCTCTCTCCACCCCTGTCCTCTA
1041 GCCACAGCATTTTTCTTTTTGTCTTTTTTTTTTTTTTTTAAATCATGGCAGATTTCAGAGGAAAGGAAATTAAAAAAAAA
1121 ATCAGGAAACCAGTTGTTATAAAGTAATTTAAAAATGAAGAAAAAAAGAAAAAAACTTATGTACAAACCAAGGGGTGTTT
1201 TTAGAACATTGTATAGAAATAAATTCATGTAAAAGGAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucucgUUCUGGGGCAGAGAUUu 5'
               || :| :: |||||:| 
Target 5' ttataAATGCATTATCTCTGAg 3'
953 - 974 133.00 -7.70
2
miRNA  3' ucucguucUGGGGCAGAGAUUu 5'
                  |:||: |:|||:| 
Target 5' aggataccATCCTTTTTCTGAa 3'
142 - 163 122.00 -11.90
3
miRNA  3' ucUCGUUCUGGGGCAGAGAUuu 5'
            |||    |:|| |||||:  
Target 5' gaAGCCTCTCTCCTTCTCTGcc 3'
683 - 704 120.00 -13.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM4150319 17 COSMIC
COSM7720509 34 COSMIC
COSM8847814 46 COSMIC
COSM7667186 78 COSMIC
COSM8199915 93 COSMIC
COSM8104895 120 COSMIC
COSM7299096 128 COSMIC
COSM7692868 142 COSMIC
COSM9534429 144 COSMIC
COSM8531097 152 COSMIC
COSM6334926 164 COSMIC
COSN31556068 211 COSMIC
COSN22394474 374 COSMIC
COSN24304467 974 COSMIC
COSN31607123 974 COSMIC
COSN26584326 1000 COSMIC
COSN19348249 1064 COSMIC
COSN26575296 1167 COSMIC
COSN26506368 1168 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1390032409 3 dbSNP
rs1306725404 4 dbSNP
rs754239625 4 dbSNP
rs367576053 6 dbSNP
rs756751181 7 dbSNP
rs1189251120 9 dbSNP
rs1485696962 11 dbSNP
rs1000314823 16 dbSNP
rs1214337871 18 dbSNP
rs1256148820 19 dbSNP
rs753222876 23 dbSNP
rs766034385 27 dbSNP
rs1284948994 30 dbSNP
rs762548623 31 dbSNP
rs142697690 34 dbSNP
rs769206581 37 dbSNP
rs1017642173 38 dbSNP
rs1176464545 41 dbSNP
rs764948095 42 dbSNP
rs761314786 44 dbSNP
rs1008793031 47 dbSNP
rs375317183 50 dbSNP
rs768439179 52 dbSNP
rs1047523660 54 dbSNP
rs1346304030 55 dbSNP
rs1461518720 56 dbSNP
rs747480158 58 dbSNP
rs775385985 61 dbSNP
rs899045690 65 dbSNP
rs989714156 75 dbSNP
rs771954100 84 dbSNP
rs568681316 85 dbSNP
rs1298009329 86 dbSNP
rs1416737821 92 dbSNP
rs771237731 94 dbSNP
rs749466052 97 dbSNP
rs1397700788 98 dbSNP
rs778321232 99 dbSNP
rs756524219 105 dbSNP
rs937783477 106 dbSNP
rs753061109 109 dbSNP
rs555244830 110 dbSNP
rs781772898 113 dbSNP
rs766834485 119 dbSNP
rs749964493 122 dbSNP
rs1362812711 124 dbSNP
rs1270097695 126 dbSNP
rs148231637 128 dbSNP
rs761598315 129 dbSNP
rs1309189800 130 dbSNP
rs753461877 131 dbSNP
rs1252068550 137 dbSNP
rs1046499196 139 dbSNP
rs1393257806 140 dbSNP
rs763929999 141 dbSNP
rs1429739204 149 dbSNP
rs780514108 150 dbSNP
rs760488131 159 dbSNP
rs191149538 161 dbSNP
rs1256719907 163 dbSNP
rs775197260 164 dbSNP
rs1804951 172 dbSNP
rs772057203 173 dbSNP
rs759375554 181 dbSNP
rs1026449102 182 dbSNP
rs774553734 191 dbSNP
rs1200803566 201 dbSNP
rs1308336410 210 dbSNP
rs1272320006 216 dbSNP
rs1212898053 230 dbSNP
rs1391572215 234 dbSNP
rs950295136 235 dbSNP
rs1016163006 248 dbSNP
rs1311438799 249 dbSNP
rs1012777374 263 dbSNP
rs376690232 265 dbSNP
rs917491654 265 dbSNP
rs552271215 270 dbSNP
rs934806912 271 dbSNP
rs1296572036 272 dbSNP
rs532551458 276 dbSNP
rs569787218 277 dbSNP
rs773429197 283 dbSNP
rs1279317879 285 dbSNP
rs1804952 286 dbSNP
rs1485983412 288 dbSNP
rs1212196682 292 dbSNP
rs978822314 294 dbSNP
rs1485267385 306 dbSNP
rs1186525632 311 dbSNP
rs1391705604 316 dbSNP
rs549865914 321 dbSNP
rs1452174302 322 dbSNP
rs1172216990 323 dbSNP
rs530578174 325 dbSNP
rs964809382 328 dbSNP
rs1343885004 330 dbSNP
rs893800390 334 dbSNP
rs1379911321 335 dbSNP
rs1321290995 336 dbSNP
rs1367689102 340 dbSNP
rs1157290726 345 dbSNP
rs1302907214 345 dbSNP
rs1017576516 356 dbSNP
rs1220686596 372 dbSNP
rs1282071155 373 dbSNP
rs1316265970 376 dbSNP
rs1215960959 377 dbSNP
rs987885953 389 dbSNP
rs1192650658 396 dbSNP
rs954612669 399 dbSNP
rs1412969520 406 dbSNP
rs1478568540 412 dbSNP
rs943633177 419 dbSNP
rs1406506546 421 dbSNP
rs1026649974 425 dbSNP
rs910758337 431 dbSNP
rs561534897 441 dbSNP
rs1325499207 446 dbSNP
rs541651936 447 dbSNP
rs993464469 473 dbSNP
rs775293466 478 dbSNP
rs1277544395 480 dbSNP
rs898993464 486 dbSNP
rs987665201 487 dbSNP
rs1228896907 488 dbSNP
rs933455969 489 dbSNP
rs1332059225 503 dbSNP
rs771693677 507 dbSNP
rs1212459152 508 dbSNP
rs185988242 512 dbSNP
rs1201534295 518 dbSNP
rs77651612 529 dbSNP
rs1469914119 539 dbSNP
rs1183568751 547 dbSNP
rs1414762966 554 dbSNP
rs963048508 560 dbSNP
rs181655460 565 dbSNP
rs576779013 571 dbSNP
rs1407274416 572 dbSNP
rs1326655084 573 dbSNP
rs1484158061 575 dbSNP
rs949068622 578 dbSNP
rs1258907345 580 dbSNP
rs1290151850 584 dbSNP
rs1207862224 590 dbSNP
rs1353413901 590 dbSNP
rs1232217779 594 dbSNP
rs1284258587 595 dbSNP
rs892164143 601 dbSNP
rs991075483 605 dbSNP
rs1289796125 607 dbSNP
rs769455609 608 dbSNP
rs958654882 612 dbSNP
rs1053766188 616 dbSNP
rs1437631001 617 dbSNP
rs1206236293 625 dbSNP
rs188525242 626 dbSNP
rs1339529350 629 dbSNP
rs1312758345 637 dbSNP
rs7800 638 dbSNP
rs1484970154 641 dbSNP
rs543536393 651 dbSNP
rs1397272332 655 dbSNP
rs1187374436 662 dbSNP
rs778308400 662 dbSNP
rs926086652 664 dbSNP
rs1469764035 668 dbSNP
rs978938777 672 dbSNP
rs943401394 673 dbSNP
rs1419000490 679 dbSNP
rs910630966 680 dbSNP
rs1309612264 686 dbSNP
rs1373617674 695 dbSNP
rs1161854428 697 dbSNP
rs1053791894 698 dbSNP
rs943330793 700 dbSNP
rs987614335 708 dbSNP
rs954868320 712 dbSNP
rs574630198 714 dbSNP
rs1224540841 717 dbSNP
rs1269235071 721 dbSNP
rs1368124481 725 dbSNP
rs1229686588 728 dbSNP
rs1277190273 734 dbSNP
rs770249642 735 dbSNP
rs1006757066 736 dbSNP
rs971929919 740 dbSNP
rs149047015 741 dbSNP
rs889388315 742 dbSNP
rs1444209568 743 dbSNP
rs1191027410 745 dbSNP
rs1241808169 746 dbSNP
rs1450309810 755 dbSNP
rs867965275 757 dbSNP
rs1170307163 760 dbSNP
rs1052423864 761 dbSNP
rs1016015622 765 dbSNP
rs748707496 769 dbSNP
rs535252600 771 dbSNP
rs745564699 771 dbSNP
rs919417259 773 dbSNP
rs971826879 777 dbSNP
rs566204903 789 dbSNP
rs8096 790 dbSNP
rs376756738 791 dbSNP
rs991181984 791 dbSNP
rs958590156 794 dbSNP
rs1035635066 798 dbSNP
rs186575528 799 dbSNP
rs967272723 800 dbSNP
rs1013365102 806 dbSNP
rs1190785291 808 dbSNP
rs1011376082 810 dbSNP
rs892107555 815 dbSNP
rs1052119914 816 dbSNP
rs1052950 820 dbSNP
rs999084688 824 dbSNP
rs74057057 825 dbSNP
rs1388775939 828 dbSNP
rs1458315517 829 dbSNP
rs1323492466 832 dbSNP
rs755344382 840 dbSNP
rs1296017896 841 dbSNP
rs1386626566 845 dbSNP
rs1302393323 847 dbSNP
rs943507923 851 dbSNP
rs910759085 867 dbSNP
rs1052261343 868 dbSNP
rs71445122 872 dbSNP
rs1329955143 873 dbSNP
rs1210598730 880 dbSNP
rs1271579549 883 dbSNP
rs1460393254 891 dbSNP
rs933446465 892 dbSNP
rs919230405 893 dbSNP
rs1269170480 897 dbSNP
rs1417045618 899 dbSNP
rs1412544409 901 dbSNP
rs761924154 901 dbSNP
rs963232705 902 dbSNP
rs569723863 903 dbSNP
rs1393343931 906 dbSNP
rs1390276553 907 dbSNP
rs1458075397 908 dbSNP
rs1036494116 912 dbSNP
rs6786 913 dbSNP
rs1288277529 914 dbSNP
rs181465986 914 dbSNP
rs1230374313 915 dbSNP
rs969609752 916 dbSNP
rs1024838919 918 dbSNP
rs1449960217 920 dbSNP
rs189431465 923 dbSNP
rs928283165 924 dbSNP
rs1204093180 926 dbSNP
rs1252529853 934 dbSNP
rs1483985774 937 dbSNP
rs956500195 941 dbSNP
rs548046935 943 dbSNP
rs1450877115 955 dbSNP
rs1412406362 960 dbSNP
rs1267577397 963 dbSNP
rs1166499694 972 dbSNP
rs1204761351 973 dbSNP
rs1370924662 973 dbSNP
rs1000540475 977 dbSNP
rs1307795979 982 dbSNP
rs903554247 987 dbSNP
rs1412190701 988 dbSNP
rs1378565945 1000 dbSNP
rs967291222 1000 dbSNP
rs1396623434 1004 dbSNP
rs1043324408 1014 dbSNP
rs1315112840 1016 dbSNP
rs1305977186 1017 dbSNP
rs913119600 1017 dbSNP
rs989998434 1018 dbSNP
rs1344278299 1019 dbSNP
rs1208677008 1020 dbSNP
rs1273232433 1020 dbSNP
rs528310799 1021 dbSNP
rs879161351 1027 dbSNP
rs889268226 1030 dbSNP
rs758742005 1033 dbSNP
rs1448481038 1035 dbSNP
rs1444488144 1039 dbSNP
rs1300523120 1044 dbSNP
rs903164894 1055 dbSNP
rs1174594764 1059 dbSNP
rs1431968627 1059 dbSNP
rs1041741699 1061 dbSNP
rs947421306 1063 dbSNP
rs1388687411 1064 dbSNP
rs559340630 1065 dbSNP
rs1360189292 1071 dbSNP
rs957170855 1079 dbSNP
rs1330532139 1080 dbSNP
rs1367122641 1080 dbSNP
rs748392729 1080 dbSNP
rs1312688940 1081 dbSNP
rs61919664 1082 dbSNP
rs1430498613 1083 dbSNP
rs1391931350 1084 dbSNP
rs1464021314 1085 dbSNP
rs1188833701 1086 dbSNP
rs1249442555 1088 dbSNP
rs1451728161 1091 dbSNP
rs1189833750 1092 dbSNP
rs1170791219 1096 dbSNP
rs1477562664 1098 dbSNP
rs1377938491 1100 dbSNP
rs1200774293 1101 dbSNP
rs1435651764 1105 dbSNP
rs1250638682 1106 dbSNP
rs1178368716 1108 dbSNP
rs1205240931 1110 dbSNP
rs1483790442 1111 dbSNP
rs1456729684 1112 dbSNP
rs184448526 1112 dbSNP
rs532346346 1113 dbSNP
rs1391020730 1117 dbSNP
rs1008046236 1121 dbSNP
rs1241653569 1122 dbSNP
rs953443553 1122 dbSNP
rs1030748685 1129 dbSNP
rs1304726502 1131 dbSNP
rs1327884638 1134 dbSNP
rs1208737832 1139 dbSNP
rs1269705368 1140 dbSNP
rs997489879 1141 dbSNP
rs1219885452 1142 dbSNP
rs1246454015 1144 dbSNP
rs1277354566 1146 dbSNP
rs1193448461 1147 dbSNP
rs1218029425 1148 dbSNP
rs898093551 1149 dbSNP
rs1159994440 1153 dbSNP
rs1051958349 1156 dbSNP
rs1403786370 1167 dbSNP
rs933364017 1168 dbSNP
rs1323096213 1170 dbSNP
rs573494596 1171 dbSNP
rs1438281484 1172 dbSNP
rs758501954 1172 dbSNP
rs1349795742 1175 dbSNP
rs1006367997 1176 dbSNP
rs1228529208 1176 dbSNP
rs1353863483 1176 dbSNP
rs149252440 1176 dbSNP
rs545282816 1176 dbSNP
rs1036440140 1180 dbSNP
rs768999546 1184 dbSNP
rs887932565 1190 dbSNP
rs1055581556 1195 dbSNP
rs1483003132 1201 dbSNP
rs1348796019 1213 dbSNP
rs909241812 1226 dbSNP
rs1414320850 1227 dbSNP
rs750510257 1228 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucUCGUUCUGGGGCAGAGAuuu 5'
            :|::| |||||||||||   
Target 5' auGGUGAAACCCCGUCUCU--- 3'
5 - 23
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000319770.3 | 3UTR | CAGUAUGGUGAAACCCCGUCUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer -0.539 3.3e-3 -0.612 7.4e-4 24 Click to see details
GSE28260 Renal cortex and medulla 0.644 8.8e-3 0.621 1.2e-2 13 Click to see details
GSE38226 Liver fibrosis 0.495 1.1e-2 0.443 2.2e-2 21 Click to see details
GSE32688 Pancreatic cancer 0.245 8.8e-2 0.192 1.5e-1 32 Click to see details
GSE42095 Differentiated embryonic stem cells 0.249 1.3e-1 0.324 6.6e-2 23 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.194 1.8e-1 0.163 2.2e-1 25 Click to see details
GSE26953 Aortic valvular endothelial cells -0.022 4.6e-1 0.057 4.0e-1 24 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
186 hsa-miR-1303 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035871 SOAT1 sterol O-acyltransferase 1 1 1
MIRT035872 FHOD3 formin homology 2 domain containing 3 1 1
MIRT035873 RPL7A ribosomal protein L7a 1 1
MIRT035874 NCAPD2 non-SMC condensin I complex subunit D2 1 1
MIRT035875 RPS8 ribosomal protein S8 1 1
MIRT035876 AHNAK AHNAK nucleoprotein 1 1
MIRT035877 ACTB actin beta 1 1
MIRT035878 DEF8 differentially expressed in FDCP 8 homolog 1 1
MIRT035879 MET MET proto-oncogene, receptor tyrosine kinase 1 1
MIRT035880 MED13 mediator complex subunit 13 1 1
MIRT035881 FAT3 FAT atypical cadherin 3 1 1
MIRT035882 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 1 1
MIRT035883 RPS16 ribosomal protein S16 1 1
MIRT035884 CDK6 cyclin dependent kinase 6 1 1
MIRT035885 GEMIN5 gem nuclear organelle associated protein 5 1 1
MIRT035886 PITRM1 pitrilysin metallopeptidase 1 1 1
MIRT035887 PRRC2A proline rich coiled-coil 2A 1 1
MIRT035888 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 1 1
MIRT035889 MLLT6 MLLT6, PHD finger containing 1 1
MIRT035890 EIF3I eukaryotic translation initiation factor 3 subunit I 1 1
MIRT035891 FASN fatty acid synthase 1 1
MIRT035892 LEPREL4 prolyl 3-hydroxylase family member 4 (non-enzymatic) 1 1
MIRT035893 HSCB HscB mitochondrial iron-sulfur cluster cochaperone 1 1
MIRT035894 PSME4 proteasome activator subunit 4 1 1
MIRT035895 FRS2 fibroblast growth factor receptor substrate 2 1 1
MIRT035896 ZNF264 zinc finger protein 264 1 1
MIRT035897 HYLS1 HYLS1, centriolar and ciliogenesis associated 1 1
MIRT035898 USP54 ubiquitin specific peptidase 54 1 1
MIRT035899 L1TD1 LINE1 type transposase domain containing 1 1 1
MIRT035900 OR51E2 olfactory receptor family 51 subfamily E member 2 1 1
MIRT053762 CLDN18 claudin 18 3 1
MIRT060730 RPS3 ribosomal protein S3 2 2
MIRT083986 RAB22A RAB22A, member RAS oncogene family 2 2
MIRT098550 TBPL1 TATA-box binding protein like 1 2 6
MIRT134983 TWF1 twinfilin actin binding protein 1 2 4
MIRT136956 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT222065 PURB purine rich element binding protein B 2 2
MIRT239574 UBN2 ubinuclein 2 2 4
MIRT261820 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT264698 C11ORF57 chromosome 11 open reading frame 57 2 4
MIRT308476 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT377481 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT442304 NEU3 neuraminidase 3 2 2
MIRT446083 SLC30A10 solute carrier family 30 member 10 2 2
MIRT449606 PRPF4 pre-mRNA processing factor 4 2 2
MIRT453767 NUCB1 nucleobindin 1 2 10
MIRT455603 SRSF3 serine and arginine rich splicing factor 3 2 2
MIRT455913 KIF2C kinesin family member 2C 2 2
MIRT460091 ZYG11B zyg-11 family member B, cell cycle regulator 2 4
MIRT460866 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT461339 NUP133 nucleoporin 133 2 2
MIRT463769 YOD1 YOD1 deubiquitinase 2 2
MIRT466368 THAP1 THAP domain containing 1 2 4
MIRT467168 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT468703 SDHD succinate dehydrogenase complex subunit D 2 2
MIRT469122 RNF126 ring finger protein 126 2 2
MIRT472426 NCBP2 nuclear cap binding protein subunit 2 2 4
MIRT479420 CDKN1B cyclin dependent kinase inhibitor 1B 2 8
MIRT484260 FAM177A1 family with sequence similarity 177 member A1 2 2
MIRT485468 IL6ST interleukin 6 signal transducer 2 10
MIRT490237 H2AFZ H2A histone family member Z 2 6
MIRT491002 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT492127 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT499169 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT499825 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT501794 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT503441 GINS4 GINS complex subunit 4 2 4
MIRT503688 MAVS mitochondrial antiviral signaling protein 2 5
MIRT506926 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT511430 HOXA10 homeobox A10 2 6
MIRT512415 LAYN layilin 2 4
MIRT513791 NIPAL3 NIPA like domain containing 3 2 4
MIRT516163 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 4
MIRT516513 PARK2 parkin RBR E3 ubiquitin protein ligase 2 2
MIRT516915 HINFP histone H4 transcription factor 2 2
MIRT517102 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT517350 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT518019 ABHD15 abhydrolase domain containing 15 2 2
MIRT520945 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT525250 RNF213 ring finger protein 213 2 2
MIRT530634 PPIC peptidylprolyl isomerase C 2 4
MIRT530671 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531563 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT538205 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT538419 COLEC10 collectin subfamily member 10 2 2
MIRT541964 ZNF485 zinc finger protein 485 2 2
MIRT543088 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT543257 ZNF662 zinc finger protein 662 2 2
MIRT543589 KIAA1549 KIAA1549 2 2
MIRT543955 RNF20 ring finger protein 20 2 2
MIRT544043 C9orf64 chromosome 9 open reading frame 64 2 4
MIRT548064 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548240 FBXW7 F-box and WD repeat domain containing 7 2 2
MIRT548442 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548623 DAZAP1 DAZ associated protein 1 2 4
MIRT548770 COLEC12 collectin subfamily member 12 2 2
MIRT549506 HDDC2 HD domain containing 2 2 4
MIRT551924 AKAP8 A-kinase anchoring protein 8 2 4
MIRT555656 PGRMC1 progesterone receptor membrane component 1 2 2
MIRT556286 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT557012 HOXD13 homeobox D13 2 4
MIRT563907 CLSPN claspin 2 2
MIRT565527 SON SON DNA binding protein 2 2
MIRT568000 COMMD2 COMM domain containing 2 2 2
MIRT569831 PLA2G16 phospholipase A2 group XVI 2 4
MIRT573905 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT616589 KLHL9 kelch like family member 9 2 2
MIRT617137 ZNF556 zinc finger protein 556 2 2
MIRT617400 API5 apoptosis inhibitor 5 2 2
MIRT617455 CCS copper chaperone for superoxide dismutase 2 2
MIRT617799 ZNF793 zinc finger protein 793 2 2
MIRT618190 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT618303 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2 2
MIRT618329 ZNF813 zinc finger protein 813 2 2
MIRT618820 PHF20 PHD finger protein 20 2 2
MIRT619153 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT619530 ZNF708 zinc finger protein 708 2 2
MIRT619849 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT620806 SLC26A2 solute carrier family 26 member 2 2 2
MIRT621312 YIPF4 Yip1 domain family member 4 2 2
MIRT621358 GUCA1B guanylate cyclase activator 1B 2 2
MIRT621366 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 2 2
MIRT621547 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT621883 TAOK1 TAO kinase 1 2 2
MIRT622451 RNF19B ring finger protein 19B 2 2
MIRT623404 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT623587 IPO9 importin 9 2 2
MIRT623974 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT624086 DPP8 dipeptidyl peptidase 8 2 2
MIRT624108 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT632486 RNF8 ring finger protein 8 2 2
MIRT634057 PLIN3 perilipin 3 2 2
MIRT634657 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT640682 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT641242 CENPN centromere protein N 2 2
MIRT642260 ZNF677 zinc finger protein 677 2 2
MIRT642954 RELA RELA proto-oncogene, NF-kB subunit 2 2
MIRT644326 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT644632 ICA1L islet cell autoantigen 1 like 2 2
MIRT645721 POLR3A RNA polymerase III subunit A 2 2
MIRT647850 LYPLA1 lysophospholipase I 2 2
MIRT649281 NEK8 NIMA related kinase 8 2 2
MIRT650038 VHL von Hippel-Lindau tumor suppressor 2 2
MIRT650354 RRP36 ribosomal RNA processing 36 2 2
MIRT651144 ZNF384 zinc finger protein 384 2 2
MIRT651778 UTP6 UTP6, small subunit processome component 2 2
MIRT652576 TLCD2 TLC domain containing 2 2 2
MIRT654621 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT656023 MYO5A myosin VA 2 2
MIRT656105 MSRB3 methionine sulfoxide reductase B3 2 2
MIRT657749 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT657924 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT658848 DUSP19 dual specificity phosphatase 19 2 2
MIRT659100 DENND6A DENN domain containing 6A 2 2
MIRT659153 DCX doublecortin 2 2
MIRT660870 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT661941 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT663577 C10orf32 BLOC-1 related complex subunit 7 2 2
MIRT664625 WDPCP WD repeat containing planar cell polarity effector 2 4
MIRT666562 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT669992 GPR156 G protein-coupled receptor 156 2 4
MIRT670445 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670853 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671942 SPPL3 signal peptide peptidase like 3 2 2
MIRT674269 LMOD3 leiomodin 3 2 2
MIRT674424 MIOX myo-inositol oxygenase 2 4
MIRT674982 ATP5G1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) 2 2
MIRT675038 BACE2 beta-site APP-cleaving enzyme 2 2 4
MIRT675309 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT675641 TTPAL alpha tocopherol transfer protein like 2 2
MIRT688688 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT689369 ZNF101 zinc finger protein 101 2 2
MIRT689605 AKAP6 A-kinase anchoring protein 6 2 2
MIRT691715 LARS leucyl-tRNA synthetase 2 2
MIRT695473 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695530 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT695878 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT696586 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT703007 HEATR5A HEAT repeat containing 5A 2 2
MIRT707942 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 2
MIRT709765 GPR183 G protein-coupled receptor 183 2 2
MIRT710332 ZNF669 zinc finger protein 669 2 2
MIRT713249 ZFP30 ZFP30 zinc finger protein 2 2
MIRT716613 RBM18 RNA binding motif protein 18 2 2
MIRT733414 BAG2 BCL2 associated athanogene 2 2 0
MIRT756135 THSD7A thrombospondin type 1 domain containing 7A 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-1303 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-1303 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-1303 Rituximab sensitive High Diffuse Large B-Cell Lymphoma cell line (DB, NU-DHL-1, NU-DUL-1, MC-116, SU-DHL-4, SU-DHL-5, FARAGE, HBL-1, OCI-Ly3, OCI-Ly7, OCI-Ly8, OCI-Ly19, RIVA, SU-DHL-8, U2932)
hsa-miR-1303 Etoposide 36462 NSC141540 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vinorelbine 44424639 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vincristine 5978 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-mir-1303 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-1303 Topotecan 60699 NSC609699 approved resistant cell line (W1)
hsa-mir-1303 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1303 Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1303 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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