pre-miRNA Information
pre-miRNA hsa-mir-4280   
Genomic Coordinates chr5: 87114879 - 87114954
Description Homo sapiens miR-4280 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4280
Sequence 11| GAGUGUAGUUCUGAGCAGAGC |31
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1267452683 6 dbSNP
rs921418201 13 dbSNP
rs975577876 15 dbSNP
rs562687273 20 dbSNP
rs968639930 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol YIPF6   
Synonyms FinGER6
Description Yip1 domain family member 6
Transcript NM_173834   
Expression
Putative miRNA Targets on YIPF6
3'UTR of YIPF6
(miRNA target sites are highlighted)
>YIPF6|NM_173834|3'UTR
   1 ATCAGGAATGGGAAATTAAAAACCAGTGAATTGAAAGCACATCTGAAAGATGCAATTCACCATGGAGCTTTGTCTCTGGC
  81 CCTTATTTGTCTAATTTTGGAGGTATTTGATAACTGAGTAGGTGAGGAGATTAAAAGGGAGCCATATAGCACTGTCACCC
 161 CTTATTTGAGGAACTGATGTTTGAAAGGCTGTTCTTTTCTCTCTTAATGTCATTTCTTTAAAAATACATGTGCATACTAC
 241 ACACAGTATATAATGCCTCCTTAAGGCATGATGGAGTCACCGTGGTCCATTTGGGTGACAACCAGTGACTTGGGAAGCAC
 321 ATAGATACATCTTACAAGTTGAATAGAGTTGATAACTATTTTCAGTTTTGAGAATACCAGTTCAGGTGCAGCTCTTAAAC
 401 ACATTGCCTTATGACTATTAGAATATGCCTCTCTTTTCATAAATAAAAATACATGGTCTATATCCATTTTCTTTTATTTC
 481 TCTCTCTTAAGCTTAAAAAGGCAATGAGAGAGGTTAGGAGTGGGTTCATACACGGAGAATGAGAAAACATGCATTAACCA
 561 ATATTCAGATTTTGATCAGGGGAAATTCTACACTTGTTGCAAAAAAAAAAAAAAAAAAAGCAAAGGGCCTCTAAAGAATC
 641 AGCCTCTTTGGTCCCTTTGTGCTGTCACCTTTTTGCCATGTTTAACAGCATCTTGGTTGGCACTCTAGTCTTAATCTTGC
 721 TCCTTAACTTTGAATATGCAGTCTAAAATGTCAGTAGTCAACATGTAATTTTCCTTTGAAATTCTGAATATTCCAGTGCT
 801 GGAACTTATCCAAAAAGAAGACCTCAGAAACTTAGATTGGTAGATCTCTAGTGCATATTATCATGTGGGCACCTTCTCTT
 881 AGGGTGGAATGAGGCAGTCTGGATGCAGCATAGTTAAAAGGAGCTGTTTAATATTCTCTGTAGTCTGGCCTCTTAACTAG
 961 AAAGTAAAGCTAAATCAGAAGCCTGTATTTAACCATGTGAACAGGGAGGGATTTAGTGTTCTGATGGCTGATTAATAGAA
1041 CAGCTAGATACTTAGAGCATGACGTGGGATGGGATGAGTTTACAGCTGCTGCCTTTTCATGGTGAGCTTAGCAGTTTTCT
1121 CATTAGATGTGTTTTTTTGGGTTGGGGAATAGCAATTTATTTTATTGATTTTAGACTTTATCAAGCTAATTAGCTCCCCT
1201 TTAGATAAGTACATGTTGCACATGTGCACCTACTTGTAATCTCAGATATTTATGCACACAAGTGTGAAGGTTTTTCAGGG
1281 AGCAGAGCATCTGGGACAGGCTGATTCTGAGCTAAACAGGGCTCCTTTAAGGCAATATGAACTGTTGCCTTCTATAAATT
1361 GCACATTGAGGAACTCTAATAGACAAAGATTAGGTGTCAGGCAGAAAACACTCATTGTAAATATACTATTAGTTGATAAA
1441 CATAGGACTTTCTTATTCCCCAGTTTTTCTTTATCATATAATTTAAATATTTATTCATTTTGTATTTAAAGACTACCTAC
1521 ACATAGATATATGATTCCAAAGTCATACTTTCTCCATCCCCACATTAGCCAAGTGAATACAGGGCCAAATGGGTTCTTGG
1601 AATGATAATAACAAAGCATTACAAAGTGGGTCCCCTTGGTTCCAGCCTTGTCCAGAGTTTTTGGTTATATATTTCTATTT
1681 ATTACAATTTACCTTTTAAATTGTAAAATAAACCTTTGTGTGGACAGAGCCAATGTTTCAATCTTGAATGAGTAAAGAAA
1761 ATACTTTGGAACTGATCCTCATTTTGAAATTGGTTCTAAATTATTATCCATTTCCAATGTCTGAAATTCTCTTACTTCCT
1841 GCTAAAACTCTCTTTCTGCCAAAGTTGTTTCGTAATCTGTCTCAATGACTATAATGTAAAATTAAAGAAGTAACCATGCT
1921 TCTCAAGGGGGAATTAAAAGTGTTTATTGAATTTTACTCAGGCTAATTGTTTGGTCAGAAATTCCTAAGGCCACAGCTTT
2001 GGGGGGTTCGTGTAGATGTACATGGTGGGTGGGTTATAAATATTGGGACTTAAGGCAGCTTGTTCTATGTATTTATCTTT
2081 GCTCTTGGGTGACTTAGGGAATGATTTTATTTGATTTAACCTTCTTTCTGTTTGCCCCGAGAATACTCGCCAGTGGCGCT
2161 TGCAGTTGTAGCATTTACCCCAAGATAACTTTGCCTACGAAATATTTCGCTTTTATTATTTTCACATCATTCTAGTATAT
2241 GGACTTTGGAAACAAAAGACATTGTTCTATTTATAGCATTCTTTTTTTTTTTTAGTAGCGGTATTTCCATTTACAAAATA
2321 TAGTAACTCTTGATTACTGAAAATGTCAAATCCTAGAAAACGTAGCATGCCTATACATGATGTTAACATCATTCTCGAAC
2401 AGTTGTTGGCCGAAGATTCATTTGATGAATCCAATTTTTTTGAAATAGACAATTCTGATGTTCTCTTTAGAAATAACTCA
2481 GTTTTTATCTTTTTTCACATTGAAAATCAGTTAGATTTGCTTAAGCCTCAAAGAGAATGTTTATGTAAATTAGCGCTGGC
2561 AATTTTTTTTTTTCTAAACAGGAAAAGGGTTAAATGAAGGTTGATAAAATGGATGTTCAATTGTCTTTCTGAAAGTGAGT
2641 GGCTTGAAGGGATGAATAAATATTTTCTTAATATATTCAAAAAAGTGCATTGCTTTCTGTGATGGAAGTTAAGACCTAAA
2721 TGTCTGGAAGTTGTAACCCTCAACACAGCTTTTCCTGATTTGCTGCAAAGGCACATAGCTGATTATAGAAGTGAAGACGG
2801 CAAGGACGGGGACTCCAACAAAGGAAACCCTGTTGCAGGATTTGGGAACTTTCATGCTTCAGATGAAATTCAGGCATGTG
2881 AGCATCACTGCAGAATGTGGTGCATCATTGCCATCATGAGTAATCACTTGCTGCTCCTACTTCTGAGACCAAGACTCTTT
2961 TGTCATATTCTTTAGCAATAGGACGGGTAAAGACTGGATTTAATTGCTGTTCAGAGTATAAAAACTCAATTGATTCCAAC
3041 ATATCTGAATGTGCAGTAAAGTCTTAAAAGTCAACCGTTAATCATTAAGTCTTTTGCCTCTAAAGTCTTTTGCCTCTGAA
3121 GAGGTTTATTACATGAGTTGATTTTCATATTTTCATTTTGGTGGGGTTTTCCTGTTGTTGGGCAAGGTGGGGTCACAGGA
3201 CATGGGACTAGTAAGCATTTTACTGTTTACTATATTTGTCTTTTTATAAACAGTATCTCCCAAAATGTGATTAGAAGGCT
3281 ACCAAGCCTGTATTTGGACATTTAATTGTGTGCTTTATATAATGTAACTACTAACAGTATTTGGACTGCCTGTTCATTCC
3361 TGGAGACAAAAATGAAAATCTGTCAGTTCAAGTTCTTGGGTAACATCAAGTCATTAGAATTTATCTAAAGCTTATCATGA
3441 TTTGATAAGACATCCATTGCATGCAGCTGTTTTAGCTCAGTGCAAAACACTGAAATTGTGATTCTTAGACTGTTTCTGAG
3521 ACATTTGGATGGAAATAAATGTATAAATGTTAATTCATGTATATAAATTAGAAACACTTTTCTAGATTCTGTAGGCTTTT
3601 GTTAAAAATAGAGAATTTCTTGGGGTTTACTTAGGCCACAGAATGGCCAAATAATAATAATGACAATGATATTACTAATA
3681 ATAATAGCTAACCTTTATTTGGCACTTACTGTGTGCCAGGCACTATTCTATTTTTTTAAGAATTTTTAAAATAACAGCTT
3761 TATTGAAATACACTTTACCATAAACTTCACCTTTTTATTTTTTATTTTTATGAGACAGGGACTCACCCAGGCTGGAGTGC
3841 AGTGGAGCAGTCATGGCACACTGTAGCCTCGACCTCCCTGGGCTCAAGCAATCCTCCCACTTCAGTGTCCCGAGTAGTTG
3921 GGACTACAGGCATGCGTCACTACACCTAATTGGCTAATTTTTGTAGTTTTTGTAGAGATAGGGTTTCGCCATGTTGCCTA
4001 GGCTGGTCTTGAATTCCTGGGCTCAAGCGATCCACCTGCTTTGGCCTCCCAAAACAGTGGGATTGCAGGCGTGAGCCACC
4081 ATGCCTGGCTGAAATTCACCTTTTAAGATGTACAATTCAGTGGTTTTTAGTATATTCACACACAAAATTGCACAACTATC
4161 ACTAACATCTAATTTTAGATCATTTTGTAACTTCACCAAGAAACCCCAGGTCTGTCAGCAGTCAGTTCCATTCCCCCTTC
4241 ATCCCAGCCTCTGGCAACCACTAATCTGCTTTCTGTCACTATTGATTTGGCCAGACACTATTCTTCTGTGCTTCTCATGC
4321 ATCTCCTGTAATACCAGTGCTACAATTCTCATTTTATGTGGAAAATTGAGGCACTGAGAGGTTAAGTAAATTGCCCACGG
4401 TCACACAGTAATTTGATTTACAACAGTAATAACACATTAGATGAGAACACAGTAGGACACAATTTTGAATTCCATTTTTA
4481 TGTACCTGAAATGAATACACCCCTCCCCCAAGGTATTTTCCCTATTGTTAGCCTTTGTACCCTAGGTACAAATATAGGTA
4561 TTTTCCCTATTGTGTTATGTACCTGAAATGAATACACCCTTCCCCCAAGGTATTTTCCCTATTGTTAGCCTTTGTACCCT
4641 AGAACTGACTGGATGTAGATAACATTTGTTTTCAGAGTAATGGAACACTGTATCAGCAGCATCTGAGAACATAAGAACAG
4721 TTGGACATTGGAAAGAGGTTTGTTGCCCTCATCCCTCCTTGAACCTCTTTTCTCTCCCGCTTCCACCACCACCACACATA
4801 TATACCCCTTTTTCTCAGTCTTAAGCATCAAACAATTTCTGCCTCTTTCTTTTTAATTCTCCCAGAGGGATGGTTAATGC
4881 ATCACAATTTAACTTGTCTATTCAGGTATTAATAGTCAAGGGATGCATCTGTTTGCTTATAGTACCAGTTATATTCCTAG
4961 GACCTTAGAGAGCAGTAGTGTGAGAATAGAATGCCTTTCTATTTGGGTTAAACTATGTGGGAGGAAAAAGTAACAGAGTA
5041 AAGGCTTTGCCTTAATGAAGTCAAGTGTTCTGCCTGGTGGGAAGTGGCCACACGCTGCACTGCGCTGCTCTTGTTTACTC
5121 TGTTCTTTCAGAGCCTTTGTACTTTGCCATCACTGCTAGTAATTTCTTGGTCCTTTTCAATACTCCATTTTAATCTTGAT
5201 TTTTTTCTATAAATAATAAATCTGTGAAAAATCTGTAAAAAGATTTGTGACTATTAAATGTGCAACTAAAAACACTGGAA
5281 AAAGAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cgAGACGAGUC----UU--GAUGUGAg 5'
            |:|| ||||    ||  ||||||| 
Target 5' atTTTGATCAGGGGAAATTCTACACTt 3'
569 - 595 159.00 -16.50
2
miRNA  3' cgagACGAGUCU-UGAUGUGAg 5'
              ||  || | :||:|||| 
Target 5' gaagTGGCCACACGCTGCACTg 3'
5081 - 5102 133.00 -10.10
3
miRNA  3' cgagACGAGUCUUGAUGUGag 5'
              ||: ||  |||||||  
Target 5' tacaTGTGCA-TACTACACac 3'
225 - 244 132.00 -9.60
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs777935133 13 dbSNP
rs1052739603 24 dbSNP
rs1268554039 27 dbSNP
rs1338919032 29 dbSNP
rs757749532 32 dbSNP
rs781712766 34 dbSNP
rs748765236 41 dbSNP
rs777149166 43 dbSNP
rs1254167664 48 dbSNP
rs1453893654 50 dbSNP
rs1320755089 53 dbSNP
rs1332682550 74 dbSNP
rs1285424547 82 dbSNP
rs779541054 86 dbSNP
rs1215362521 89 dbSNP
rs1361064606 97 dbSNP
rs759729187 105 dbSNP
rs892872880 127 dbSNP
rs1371661701 128 dbSNP
rs1011775476 146 dbSNP
rs1357955496 146 dbSNP
rs753590574 154 dbSNP
rs754430248 161 dbSNP
rs900000774 164 dbSNP
rs1355763890 166 dbSNP
rs778494388 167 dbSNP
rs997068383 172 dbSNP
rs1029933962 178 dbSNP
rs1207198282 195 dbSNP
rs955335610 200 dbSNP
rs550261639 206 dbSNP
rs1455810608 207 dbSNP
rs1254179309 230 dbSNP
rs1016041713 235 dbSNP
rs765402682 240 dbSNP
rs372331901 250 dbSNP
rs1234642787 252 dbSNP
rs974604870 260 dbSNP
rs1471602103 268 dbSNP
rs915708556 269 dbSNP
rs969876137 272 dbSNP
rs1181380221 273 dbSNP
rs1236230506 282 dbSNP
rs981299652 283 dbSNP
rs1053988299 303 dbSNP
rs192682099 310 dbSNP
rs1374928000 321 dbSNP
rs747964733 329 dbSNP
rs1012089086 336 dbSNP
rs1440766516 339 dbSNP
rs1352411338 365 dbSNP
rs928534746 366 dbSNP
rs1425534584 376 dbSNP
rs1437041396 380 dbSNP
rs1396056212 385 dbSNP
rs1173605793 391 dbSNP
rs1431979255 392 dbSNP
rs764307619 394 dbSNP
rs751337783 404 dbSNP
rs1480312758 407 dbSNP
rs1003529696 413 dbSNP
rs1015001629 426 dbSNP
rs1485907196 434 dbSNP
rs1401110315 449 dbSNP
rs1052779487 452 dbSNP
rs914261504 454 dbSNP
rs947117260 455 dbSNP
rs1307546766 456 dbSNP
rs111400326 459 dbSNP
rs1368153031 467 dbSNP
rs142157939 471 dbSNP
rs1294807299 475 dbSNP
rs1414995507 478 dbSNP
rs899971621 483 dbSNP
rs1312678203 493 dbSNP
rs1464808374 496 dbSNP
rs997037152 502 dbSNP
rs1347470650 506 dbSNP
rs1351602099 509 dbSNP
rs1028206266 511 dbSNP
rs1409826570 512 dbSNP
rs1130875 517 dbSNP
rs1051290612 518 dbSNP
rs879034021 524 dbSNP
rs1475673807 527 dbSNP
rs1259360382 528 dbSNP
rs1257020877 529 dbSNP
rs953540934 533 dbSNP
rs1004505112 534 dbSNP
rs1201244391 535 dbSNP
rs767401752 548 dbSNP
rs750346843 554 dbSNP
rs1314667753 580 dbSNP
rs1294630432 582 dbSNP
rs1233311623 589 dbSNP
rs1282665166 592 dbSNP
rs1290985158 593 dbSNP
rs1185687652 601 dbSNP
rs1364503357 601 dbSNP
rs58273451 601 dbSNP
rs867616318 601 dbSNP
rs878909094 601 dbSNP
rs879085319 601 dbSNP
rs1482116589 602 dbSNP
rs1262143049 608 dbSNP
rs986360355 608 dbSNP
rs1185900707 609 dbSNP
rs1463506546 615 dbSNP
rs1252477596 620 dbSNP
rs866409286 621 dbSNP
rs911089572 622 dbSNP
rs1376848260 625 dbSNP
rs1478183269 626 dbSNP
rs1270943923 632 dbSNP
rs912173612 633 dbSNP
rs935826867 637 dbSNP
rs1015595268 654 dbSNP
rs963037548 656 dbSNP
rs1309670945 677 dbSNP
rs1296775400 679 dbSNP
rs1173986019 681 dbSNP
rs965032006 687 dbSNP
rs1363666689 696 dbSNP
rs1428582510 704 dbSNP
rs1328439918 706 dbSNP
rs184658779 708 dbSNP
rs1393815208 715 dbSNP
rs1381774159 717 dbSNP
rs1463694376 721 dbSNP
rs189159380 723 dbSNP
rs1169500155 727 dbSNP
rs1447364076 728 dbSNP
rs45508695 736 dbSNP
rs746788521 749 dbSNP
rs1330898116 765 dbSNP
rs928503568 769 dbSNP
rs923632719 773 dbSNP
rs1196987090 814 dbSNP
rs955954377 818 dbSNP
rs989136626 820 dbSNP
rs754630241 823 dbSNP
rs1339690317 825 dbSNP
rs1250360582 834 dbSNP
rs935039127 834 dbSNP
rs770754273 849 dbSNP
rs776716301 865 dbSNP
rs1340479289 867 dbSNP
rs1234336066 874 dbSNP
rs1235638430 890 dbSNP
rs914208732 906 dbSNP
rs989256710 934 dbSNP
rs1305936560 937 dbSNP
rs1340242664 956 dbSNP
rs915034741 965 dbSNP
rs1297817300 968 dbSNP
rs947914224 973 dbSNP
rs1227824497 982 dbSNP
rs1275400280 996 dbSNP
rs947055513 1019 dbSNP
rs1044947712 1026 dbSNP
rs1453752439 1036 dbSNP
rs1038758709 1053 dbSNP
rs1183378242 1059 dbSNP
rs921662547 1060 dbSNP
rs759861058 1063 dbSNP
rs1202574775 1064 dbSNP
rs906494240 1065 dbSNP
rs1282875546 1070 dbSNP
rs933085829 1082 dbSNP
rs1344951968 1094 dbSNP
rs1273518965 1108 dbSNP
rs1241358446 1130 dbSNP
rs939353145 1131 dbSNP
rs1451974366 1145 dbSNP
rs193156964 1148 dbSNP
rs866506091 1151 dbSNP
rs1377459532 1154 dbSNP
rs891341929 1163 dbSNP
rs897834757 1167 dbSNP
rs1245844382 1175 dbSNP
rs1160224749 1179 dbSNP
rs995303343 1184 dbSNP
rs1448481116 1189 dbSNP
rs1168721791 1194 dbSNP
rs1004431165 1206 dbSNP
rs185059142 1207 dbSNP
rs771305226 1210 dbSNP
rs1189098979 1211 dbSNP
rs1442202566 1213 dbSNP
rs1027759705 1214 dbSNP
rs775670278 1223 dbSNP
rs763504282 1225 dbSNP
rs1267617725 1228 dbSNP
rs1226594558 1240 dbSNP
rs189900858 1246 dbSNP
rs367859540 1247 dbSNP
rs764675035 1255 dbSNP
rs905946888 1258 dbSNP
rs1002951963 1292 dbSNP
rs1320268322 1295 dbSNP
rs1035448450 1299 dbSNP
rs955880289 1300 dbSNP
rs1384113779 1313 dbSNP
rs977708649 1316 dbSNP
rs1328316269 1320 dbSNP
rs988715385 1323 dbSNP
rs1418208102 1324 dbSNP
rs775037309 1327 dbSNP
rs1363331953 1338 dbSNP
rs1434636905 1343 dbSNP
rs568857123 1355 dbSNP
rs956416587 1357 dbSNP
rs1247884277 1370 dbSNP
rs1298494206 1371 dbSNP
rs989616796 1390 dbSNP
rs1309345728 1416 dbSNP
rs1242617977 1431 dbSNP
rs1271749005 1442 dbSNP
rs974801240 1442 dbSNP
rs921632201 1447 dbSNP
rs181219668 1450 dbSNP
rs1215390783 1458 dbSNP
rs987224581 1483 dbSNP
rs980611649 1516 dbSNP
rs1464214173 1518 dbSNP
rs927804777 1526 dbSNP
rs1394545048 1532 dbSNP
rs939238574 1534 dbSNP
rs1403273512 1553 dbSNP
rs1188789937 1555 dbSNP
rs1263316965 1557 dbSNP
rs1475905945 1560 dbSNP
rs1390178465 1576 dbSNP
rs1187215985 1581 dbSNP
rs1036297106 1586 dbSNP
rs897797739 1587 dbSNP
rs1186164422 1589 dbSNP
rs930687939 1593 dbSNP
rs1214948659 1605 dbSNP
rs912702777 1606 dbSNP
rs767980503 1613 dbSNP
rs1236363942 1617 dbSNP
rs1371586363 1634 dbSNP
rs1292453994 1637 dbSNP
rs1368445228 1646 dbSNP
rs1462394049 1647 dbSNP
rs1329120606 1652 dbSNP
rs753370333 1662 dbSNP
rs1389923632 1665 dbSNP
rs1049600978 1695 dbSNP
rs898728703 1699 dbSNP
rs931613289 1701 dbSNP
rs889242334 1702 dbSNP
rs1007649504 1715 dbSNP
rs1477043933 1715 dbSNP
rs754660171 1719 dbSNP
rs1205459428 1748 dbSNP
rs1482628284 1752 dbSNP
rs1272247020 1754 dbSNP
rs1212690502 1774 dbSNP
rs902023806 1775 dbSNP
rs1300418012 1786 dbSNP
rs1217033272 1798 dbSNP
rs1374866266 1800 dbSNP
rs1279826605 1818 dbSNP
rs1408807486 1839 dbSNP
rs1364301712 1847 dbSNP
rs753527502 1848 dbSNP
rs1312071057 1851 dbSNP
rs1341035905 1858 dbSNP
rs905874967 1863 dbSNP
rs1235056475 1872 dbSNP
rs868801253 1873 dbSNP
rs1002878241 1885 dbSNP
rs1360256858 1894 dbSNP
rs1031946199 1914 dbSNP
rs1412887524 1917 dbSNP
rs1410212217 1930 dbSNP
rs1035748936 1938 dbSNP
rs891608882 1941 dbSNP
rs1177810248 1943 dbSNP
rs1472399021 1974 dbSNP
rs956560367 1994 dbSNP
rs1189798986 1995 dbSNP
rs1485871972 1998 dbSNP
rs1255403678 2000 dbSNP
rs989195792 2001 dbSNP
rs1010468410 2003 dbSNP
rs1021488440 2007 dbSNP
rs1227193635 2010 dbSNP
rs764616904 2011 dbSNP
rs138903451 2013 dbSNP
rs1028627134 2023 dbSNP
rs1380321279 2028 dbSNP
rs752230756 2066 dbSNP
rs1475851533 2069 dbSNP
rs987191905 2090 dbSNP
rs1347411959 2102 dbSNP
rs1190710889 2130 dbSNP
rs907605028 2132 dbSNP
rs940479072 2139 dbSNP
rs183897055 2140 dbSNP
rs757955934 2149 dbSNP
rs1255180579 2159 dbSNP
rs188279318 2165 dbSNP
rs1486821632 2185 dbSNP
rs1242574848 2196 dbSNP
rs960592188 2196 dbSNP
rs1326458547 2198 dbSNP
rs777660161 2199 dbSNP
rs931517214 2200 dbSNP
rs1464708603 2209 dbSNP
rs1044635870 2210 dbSNP
rs1312487820 2216 dbSNP
rs1376132279 2240 dbSNP
rs1364701051 2241 dbSNP
rs905842887 2248 dbSNP
rs1434537394 2253 dbSNP
rs1386521309 2259 dbSNP
rs1416636630 2261 dbSNP
rs1328223887 2262 dbSNP
rs761550035 2277 dbSNP
rs747017278 2278 dbSNP
rs1162450193 2279 dbSNP
rs1430013052 2282 dbSNP
rs767342394 2282 dbSNP
rs796672671 2282 dbSNP
rs938702357 2287 dbSNP
rs1254368186 2294 dbSNP
rs1306138820 2294 dbSNP
rs1349743264 2296 dbSNP
rs919212008 2298 dbSNP
rs1487961418 2301 dbSNP
rs141405769 2302 dbSNP
rs1308840346 2304 dbSNP
rs891862716 2322 dbSNP
rs1010354868 2344 dbSNP
rs1309616663 2346 dbSNP
rs930633904 2359 dbSNP
rs1310139176 2362 dbSNP
rs1043280362 2363 dbSNP
rs760623191 2365 dbSNP
rs996063764 2368 dbSNP
rs1387371034 2383 dbSNP
rs1291996968 2387 dbSNP
rs182054519 2387 dbSNP
rs954339693 2391 dbSNP
rs1370916472 2397 dbSNP
rs753378176 2398 dbSNP
rs1202364051 2402 dbSNP
rs1396748917 2402 dbSNP
rs1198956948 2406 dbSNP
rs943403282 2412 dbSNP
rs754435559 2415 dbSNP
rs1014630680 2420 dbSNP
rs1197155165 2421 dbSNP
rs778481390 2429 dbSNP
rs1250282068 2435 dbSNP
rs1484265749 2435 dbSNP
rs1204829308 2436 dbSNP
rs962095682 2452 dbSNP
rs1483004682 2459 dbSNP
rs1040499637 2479 dbSNP
rs901992693 2483 dbSNP
rs1178184277 2487 dbSNP
rs973177808 2488 dbSNP
rs1393388833 2490 dbSNP
rs1351285428 2499 dbSNP
rs1307194871 2501 dbSNP
rs1410616682 2509 dbSNP
rs920054447 2514 dbSNP
rs1431719971 2516 dbSNP
rs1175643926 2518 dbSNP
rs1173072759 2521 dbSNP
rs1465148668 2527 dbSNP
rs952922924 2554 dbSNP
rs999061519 2556 dbSNP
rs1053772402 2563 dbSNP
rs1250543345 2563 dbSNP
rs1472728569 2563 dbSNP
rs1482276907 2565 dbSNP
rs1281421924 2566 dbSNP
rs1201506974 2572 dbSNP
rs1344451375 2580 dbSNP
rs1254357416 2584 dbSNP
rs1293263350 2585 dbSNP
rs980297893 2588 dbSNP
rs927531669 2589 dbSNP
rs371795135 2590 dbSNP
rs1436681954 2612 dbSNP
rs938967075 2622 dbSNP
rs1287957830 2636 dbSNP
rs1407825741 2660 dbSNP
rs1012245564 2663 dbSNP
rs1021883060 2677 dbSNP
rs1395419188 2683 dbSNP
rs1399921774 2693 dbSNP
rs1159814185 2709 dbSNP
rs1369917519 2724 dbSNP
rs1442831547 2725 dbSNP
rs1299723697 2730 dbSNP
rs1410854931 2732 dbSNP
rs1365237132 2739 dbSNP
rs1471844230 2740 dbSNP
rs1239548871 2750 dbSNP
rs1385942960 2750 dbSNP
rs752389552 2766 dbSNP
rs1301577511 2771 dbSNP
rs1350822181 2776 dbSNP
rs1442361237 2784 dbSNP
rs1254608559 2785 dbSNP
rs1057052757 2787 dbSNP
rs913272333 2799 dbSNP
rs946086045 2800 dbSNP
rs186468971 2808 dbSNP
rs1043157056 2809 dbSNP
rs1001887944 2812 dbSNP
rs143245798 2819 dbSNP
rs191808615 2827 dbSNP
rs1338636687 2844 dbSNP
rs1050277699 2847 dbSNP
rs113717633 2852 dbSNP
rs960812023 2853 dbSNP
rs890368533 2858 dbSNP
rs1205819170 2861 dbSNP
rs1008855094 2863 dbSNP
rs1462721369 2878 dbSNP
rs1014962671 2894 dbSNP
rs182075301 2906 dbSNP
rs971959730 2907 dbSNP
rs781054887 2917 dbSNP
rs1164202182 2928 dbSNP
rs1472671653 2929 dbSNP
rs780655081 2935 dbSNP
rs1191028439 2956 dbSNP
rs1465429970 2961 dbSNP
rs749425618 2968 dbSNP
rs1247523099 2974 dbSNP
rs1487713563 2985 dbSNP
rs1453557363 2986 dbSNP
rs41306121 3006 dbSNP
rs1253920300 3009 dbSNP
rs1027423241 3010 dbSNP
rs1353976562 3017 dbSNP
rs1299799347 3027 dbSNP
rs969133536 3040 dbSNP
rs1389613723 3043 dbSNP
rs1364323922 3046 dbSNP
rs1294783406 3063 dbSNP
rs774507232 3073 dbSNP
rs1437904378 3076 dbSNP
rs141469881 3077 dbSNP
rs772132090 3078 dbSNP
rs1023075615 3087 dbSNP
rs1405186970 3087 dbSNP
rs1348007354 3089 dbSNP
rs1457239547 3092 dbSNP
rs186608079 3099 dbSNP
rs1390040287 3108 dbSNP
rs1186764453 3119 dbSNP
rs960277836 3138 dbSNP
rs6525242 3147 dbSNP
rs1221082768 3167 dbSNP
rs1449695586 3173 dbSNP
rs1372779007 3189 dbSNP
rs191568740 3192 dbSNP
rs749345867 3203 dbSNP
rs1272381801 3226 dbSNP
rs1220510694 3227 dbSNP
rs1367668352 3233 dbSNP
rs1296310084 3234 dbSNP
rs1433884660 3246 dbSNP
rs1351895394 3256 dbSNP
rs1310250763 3258 dbSNP
rs1430730429 3259 dbSNP
rs1043513704 3272 dbSNP
rs945913683 3284 dbSNP
rs910531193 3288 dbSNP
rs768923493 3298 dbSNP
rs1425922766 3302 dbSNP
rs932085880 3305 dbSNP
rs1050245551 3311 dbSNP
rs1190647017 3337 dbSNP
rs1215747951 3345 dbSNP
rs1477176442 3349 dbSNP
rs1182716416 3360 dbSNP
rs890294801 3370 dbSNP
rs1040468879 3387 dbSNP
rs1212106999 3388 dbSNP
rs944569768 3399 dbSNP
rs1320421120 3400 dbSNP
rs923413662 3406 dbSNP
rs753755559 3408 dbSNP
rs774982316 3428 dbSNP
rs1330780122 3431 dbSNP
rs1036293962 3434 dbSNP
rs934821939 3438 dbSNP
rs3087685 3454 dbSNP
rs1297001564 3462 dbSNP
rs1470038947 3466 dbSNP
rs1450855585 3479 dbSNP
rs994494735 3485 dbSNP
rs1360203082 3499 dbSNP
rs1053252989 3505 dbSNP
rs1468293226 3507 dbSNP
rs1414536320 3542 dbSNP
rs1027763695 3544 dbSNP
rs893302407 3556 dbSNP
rs1249384221 3568 dbSNP
rs1183328298 3578 dbSNP
rs1186919845 3581 dbSNP
rs1011803103 3586 dbSNP
rs182509345 3596 dbSNP
rs1207497191 3605 dbSNP
rs1475799076 3612 dbSNP
rs1001950155 3625 dbSNP
rs371414356 3626 dbSNP
rs758074148 3627 dbSNP
rs993461388 3642 dbSNP
rs1020556031 3647 dbSNP
rs904851261 3650 dbSNP
rs1230332609 3671 dbSNP
rs968060519 3677 dbSNP
rs773654371 3679 dbSNP
rs1302761706 3685 dbSNP
rs777526873 3703 dbSNP
rs1165471354 3704 dbSNP
rs750836787 3706 dbSNP
rs1321255971 3729 dbSNP
rs1034726313 3731 dbSNP
rs960446404 3731 dbSNP
rs1362216939 3741 dbSNP
rs759066291 3751 dbSNP
rs1424174491 3755 dbSNP
rs1413055596 3781 dbSNP
rs993659107 3785 dbSNP
rs925983177 3791 dbSNP
rs1450837482 3792 dbSNP
rs1248145355 3818 dbSNP
rs1207502952 3821 dbSNP
rs756520434 3839 dbSNP
rs986220212 3862 dbSNP
rs1432342296 3865 dbSNP
rs1445410273 3871 dbSNP
rs146161831 3872 dbSNP
rs1312681907 3873 dbSNP
rs1244456122 3877 dbSNP
rs1377714057 3890 dbSNP
rs1233195531 3892 dbSNP
rs1298439835 3902 dbSNP
rs1294377173 3908 dbSNP
rs749804871 3913 dbSNP
rs1383158465 3926 dbSNP
rs1295492846 3928 dbSNP
rs1045438552 3935 dbSNP
rs944540126 3936 dbSNP
rs1349059575 3944 dbSNP
rs768679892 3958 dbSNP
rs1451282381 3960 dbSNP
rs1207169824 3973 dbSNP
rs779066479 3977 dbSNP
rs897728357 3979 dbSNP
rs1426204678 3983 dbSNP
rs1447778167 3989 dbSNP
rs1131506 4025 dbSNP
rs1218091994 4029 dbSNP
rs1235805799 4030 dbSNP
rs1472462398 4036 dbSNP
rs1487929312 4049 dbSNP
rs1291532272 4054 dbSNP
rs1220645734 4057 dbSNP
rs930591049 4062 dbSNP
rs1344939893 4067 dbSNP
rs951988417 4071 dbSNP
rs984687813 4072 dbSNP
rs1303731617 4080 dbSNP
rs1387596411 4082 dbSNP
rs748113917 4085 dbSNP
rs906844432 4092 dbSNP
rs1419857047 4105 dbSNP
rs1471506393 4114 dbSNP
rs1048719743 4116 dbSNP
rs1017560328 4133 dbSNP
rs904872301 4134 dbSNP
rs1408314249 4137 dbSNP
rs772374148 4141 dbSNP
rs1331694188 4146 dbSNP
rs976119920 4152 dbSNP
rs1131507 4182 dbSNP
rs1034747392 4204 dbSNP
rs1432248084 4210 dbSNP
rs1266242293 4217 dbSNP
rs773375046 4228 dbSNP
rs1197794609 4232 dbSNP
rs186791465 4236 dbSNP
rs1414791803 4237 dbSNP
rs770684487 4242 dbSNP
rs923268118 4248 dbSNP
rs1195702214 4251 dbSNP
rs1337973067 4262 dbSNP
rs1257857464 4269 dbSNP
rs1233990188 4284 dbSNP
rs934729381 4293 dbSNP
rs1281611335 4304 dbSNP
rs1411481262 4308 dbSNP
rs752390277 4322 dbSNP
rs1307132520 4335 dbSNP
rs1389624638 4349 dbSNP
rs1357857472 4367 dbSNP
rs78492888 4382 dbSNP
rs1465102409 4390 dbSNP
rs1279307815 4394 dbSNP
rs967651136 4399 dbSNP
rs182043429 4405 dbSNP
rs765017488 4408 dbSNP
rs947582184 4412 dbSNP
rs1413200936 4433 dbSNP
rs1032977316 4437 dbSNP
rs1181475553 4444 dbSNP
rs1436597430 4449 dbSNP
rs1465929514 4450 dbSNP
rs535932399 4453 dbSNP
rs1159284021 4454 dbSNP
rs1258796344 4459 dbSNP
rs1201176227 4460 dbSNP
rs1460920495 4461 dbSNP
rs1261541876 4473 dbSNP
rs953369831 4484 dbSNP
rs1044616080 4496 dbSNP
rs1330029495 4500 dbSNP
rs986190529 4504 dbSNP
rs1276700676 4505 dbSNP
rs1236528343 4525 dbSNP
rs1342264585 4533 dbSNP
rs757900914 4543 dbSNP
rs1394993299 4564 dbSNP
rs775095567 4566 dbSNP
rs1056097388 4568 dbSNP
rs763654138 4573 dbSNP
rs1457463984 4579 dbSNP
rs762316683 4601 dbSNP
rs1158361690 4607 dbSNP
rs1468922419 4617 dbSNP
rs189140891 4622 dbSNP
rs1259561349 4628 dbSNP
rs751223617 4656 dbSNP
rs756610203 4659 dbSNP
rs1482021132 4663 dbSNP
rs751440896 4681 dbSNP
rs1181264787 4691 dbSNP
rs1444517263 4691 dbSNP
rs1241378476 4693 dbSNP
rs919124121 4695 dbSNP
rs766840693 4700 dbSNP
rs1210603033 4701 dbSNP
rs1465517204 4707 dbSNP
rs1364143736 4714 dbSNP
rs1471004445 4722 dbSNP
rs1283821049 4741 dbSNP
rs193032795 4743 dbSNP
rs1203220891 4755 dbSNP
rs1358172986 4777 dbSNP
rs1284752182 4779 dbSNP
rs1245192989 4780 dbSNP
rs1423979509 4794 dbSNP
rs1299194738 4797 dbSNP
rs930539283 4798 dbSNP
rs896151047 4805 dbSNP
rs1364100934 4807 dbSNP
rs1049458130 4814 dbSNP
rs993235727 4844 dbSNP
rs1393363616 4850 dbSNP
rs1164145692 4852 dbSNP
rs1434821694 4869 dbSNP
rs926264741 4871 dbSNP
rs757223556 4877 dbSNP
rs1383854756 4882 dbSNP
rs1377842014 4903 dbSNP
rs1241791397 4904 dbSNP
rs1191261451 4937 dbSNP
rs1453504166 4940 dbSNP
rs1408534337 4964 dbSNP
rs1056083740 4976 dbSNP
rs1221386999 4980 dbSNP
rs10531 4982 dbSNP
rs1357198578 4983 dbSNP
rs755516817 4997 dbSNP
rs779252578 5002 dbSNP
rs1041847775 5005 dbSNP
rs1444737631 5014 dbSNP
rs903356056 5018 dbSNP
rs1000421511 5020 dbSNP
rs1033279673 5032 dbSNP
rs1006091713 5044 dbSNP
rs748282355 5045 dbSNP
rs953632984 5045 dbSNP
rs3513 5046 dbSNP
rs1347369358 5059 dbSNP
rs1235185839 5068 dbSNP
rs1282556524 5071 dbSNP
rs1340035993 5072 dbSNP
rs1430528680 5072 dbSNP
rs780800724 5073 dbSNP
rs1195167772 5075 dbSNP
rs1251064615 5078 dbSNP
rs1439375026 5079 dbSNP
rs1196420248 5081 dbSNP
rs1252041755 5083 dbSNP
rs976005243 5084 dbSNP
rs1454421811 5085 dbSNP
rs1195030562 5086 dbSNP
rs1479136872 5087 dbSNP
rs1387772368 5090 dbSNP
rs1018989316 5094 dbSNP
rs1198511627 5095 dbSNP
rs1336441299 5102 dbSNP
rs1489796010 5104 dbSNP
rs114368036 5109 dbSNP
rs1205749928 5118 dbSNP
rs1306795829 5120 dbSNP
rs778011435 5121 dbSNP
rs972561470 5121 dbSNP
rs185420346 5126 dbSNP
rs1282226014 5135 dbSNP
rs951985237 5137 dbSNP
rs1343990743 5143 dbSNP
rs771081316 5148 dbSNP
rs1191210854 5167 dbSNP
rs1370586248 5188 dbSNP
rs1443594015 5196 dbSNP
rs1441895973 5200 dbSNP
rs914671777 5200 dbSNP
rs1305822060 5212 dbSNP
rs780152198 5214 dbSNP
rs1430320529 5215 dbSNP
rs745653676 5220 dbSNP
rs1479358636 5221 dbSNP
rs776413917 5223 dbSNP
rs1363117460 5234 dbSNP
rs1480268586 5236 dbSNP
rs745608546 5246 dbSNP
rs769792476 5252 dbSNP
rs1442474842 5263 dbSNP
rs1262162277 5269 dbSNP
rs1221335807 5273 dbSNP
rs1330712522 5280 dbSNP
rs1290614831 5282 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cgagacgagucuugaUGUGAg 5'
                         | |:| 
Target 5' -------aucaggggAAAUUc 3'
1 - 14
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000462683.1 | 3UTR | AUCAGGGGAAAUUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
67 hsa-miR-4280 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT065612 DAZAP2 DAZ associated protein 2 2 10
MIRT084985 BACH1 BTB domain and CNC homolog 1 2 2
MIRT088053 UBXN2A UBX domain protein 2A 2 4
MIRT097327 SCAMP1 secretory carrier membrane protein 1 2 2
MIRT099148 MYLIP myosin regulatory light chain interacting protein 2 12
MIRT127042 FAM208B family with sequence similarity 208 member B 2 4
MIRT140479 BNIP2 BCL2 interacting protein 2 2 6
MIRT154889 GNAS GNAS complex locus 2 4
MIRT187983 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT190440 EIF5 eukaryotic translation initiation factor 5 2 2
MIRT240673 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT295049 EVI5L ecotropic viral integration site 5 like 2 2
MIRT324749 ACER2 alkaline ceramidase 2 2 2
MIRT366075 FAM127A retrotransposon Gag like 8C 2 4
MIRT442625 LOX lysyl oxidase 2 2
MIRT445224 TYRP1 tyrosinase related protein 1 2 2
MIRT448967 CCNT2 cyclin T2 2 4
MIRT450137 PFN4 profilin family member 4 2 2
MIRT464350 USP46 ubiquitin specific peptidase 46 2 2
MIRT470460 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 2
MIRT473691 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT480188 CALM2 calmodulin 2 2 6
MIRT486355 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT486708 TROVE2 TROVE domain family member 2 2 4
MIRT488337 SCD stearoyl-CoA desaturase 2 2
MIRT489322 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT491791 ZNF24 zinc finger protein 24 2 2
MIRT491970 USP37 ubiquitin specific peptidase 37 2 2
MIRT492029 TWF1 twinfilin actin binding protein 1 2 4
MIRT492063 TMEM245 transmembrane protein 245 2 2
MIRT492247 SLC39A9 solute carrier family 39 member 9 2 2
MIRT492254 SLC35F5 solute carrier family 35 member F5 2 2
MIRT492592 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493436 KAT7 lysine acetyltransferase 7 2 2
MIRT493470 IPMK inositol polyphosphate multikinase 2 2
MIRT493639 HECTD1 HECT domain E3 ubiquitin protein ligase 1 2 2
MIRT493919 FAM127B retrotransposon Gag like 8A 2 4
MIRT494639 ARNTL aryl hydrocarbon receptor nuclear translocator like 2 2
MIRT500032 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT504589 ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide 2 4
MIRT505535 SP4 Sp4 transcription factor 2 6
MIRT507539 DNAJB6 DnaJ heat shock protein family (Hsp40) member B6 2 6
MIRT508846 TMCO1 transmembrane and coiled-coil domains 1 2 4
MIRT510488 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT511402 IFNAR2 interferon alpha and beta receptor subunit 2 2 6
MIRT523252 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT525939 C11orf74 chromosome 11 open reading frame 74 2 2
MIRT531453 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT533317 UNKL unkempt family like zinc finger 2 2
MIRT541034 STRBP spermatid perinuclear RNA binding protein 2 8
MIRT546734 RNF217 ring finger protein 217 2 2
MIRT555125 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT556105 MOAP1 modulator of apoptosis 1 2 2
MIRT560205 AK4 adenylate kinase 4 2 2
MIRT561087 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT566967 LBR lamin B receptor 2 2
MIRT567344 H3F3B H3 histone family member 3B 2 2
MIRT567863 DCAF12 DDB1 and CUL4 associated factor 12 2 2
MIRT574449 SCML2 Scm polycomb group protein like 2 2 2
MIRT575700 Map1b microtubule-associated protein 1B 2 2
MIRT651432 YIPF6 Yip1 domain family member 6 2 2
MIRT659728 CCDC93 coiled-coil domain containing 93 2 2
MIRT686937 SFT2D3 SFT2 domain containing 3 2 2
MIRT699385 SLC30A6 solute carrier family 30 member 6 2 2
MIRT710287 CSNK1G3 casein kinase 1 gamma 3 2 2
MIRT715123 PANK3 pantothenate kinase 3 2 2
MIRT721847 VLDLR very low density lipoprotein receptor 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4280 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4280 Platinum 23939 resistant tissue
hsa-miR-4280 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4280 Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-4280 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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