pre-miRNA Information
pre-miRNA hsa-mir-23a   
Genomic Coordinates chr19: 13836587 - 13836659
Synonyms MIRN23A, hsa-mir-23a, miRNA23A, MIR23A
Description Homo sapiens miR-23a stem-loop
Comment This miRNA was previously named miR-23 . This finding was later retracted after the discovery that the regulated gene was human homolog of ES1 (HES1), whose function is unknown.
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-23a-5p
Sequence 9| GGGGUUCCUGGGGAUGGGAUUU |30
Evidence Experimental
Experiments Cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs748509260 12 dbSNP
rs1205403719 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol USP49   
Synonyms -
Description ubiquitin specific peptidase 49
Transcript NM_018561   
Expression
Putative miRNA Targets on USP49
3'UTR of USP49
(miRNA target sites are highlighted)
>USP49|NM_018561|3'UTR
   1 TTTGTCCACATTTTATTGTTTTCCTTTTATTTCCATCCCATGGATTACCTAGAGGGAAATTACATACATCAAAAATCCAG
  81 TGGAAAGAATTGTGAAAATTGGGTTGGGCGCCGTGGCTCACACCTGTAATCCTAGCGCTTTGGGAGGCCGCGGTGGGTGG
 161 ATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTTAAACCCCGTCTCTACTAAAATAGTACAAAAATTAG
 241 CCGGGCGTGGTGGTGGGCACTGGTAATCCCAGGTACTCAAGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGA
 321 GGTTGCAGTGAGCCAAGATTATGCCACTGCACTTCAGCCTGGGTGACAGAGCAAGACTCTTATCTCAAAAAAAATAAAAA
 401 GAATTATGAAAGTTGGATTCAAATTTTGGGTATATTACTAAGTAACAACATATGGTTGTTCTAAGAATTAAAAGGAACTG
 481 ACATGTAAAAGTGCTTAGAACAGGACCTAGGCCCTGTGCAATGGCTCACACCTGTAATTCCAACACTTTGGGAGGCAGAG
 561 GCGGGAGGATTGCTTGAGGCCGAGGGTTCAAGACTAGCCTGGGCAACATAGCGAGACTGCATCTCTACAAAAAATTTAAA
 641 AATTATCCAGGTGTAATGGTGTGCACCTGTGATCCTAGCTACTTGGGAGGCTGAGGTGGGAGAATTGCTCAAGCCCAGGA
 721 GTTTGAAGTTGCAATGAGCTATGATTTCACCACTGCATTCTAGCCTGGGCAACAGAGTGAGATCCTGACTCAAATAAATA
 801 AATAAGAAGAGCAGTTGCCTACCACATAGTACTTATTCAGTCAGTGTTAGAGGATATTGTAGTATTATCAAAAGTATTGG
 881 TTATTGATAATATTACTGTTTTGTGGTAATGCTACTTCTGCACACCCCAGTTTCCTTCTTGGTTATGCAGAAACAGTAGA
 961 ACCTGTGTAACCTCAAGGAGATATTGTATGAATCTCACTAGCCGCAGCTTATAATAAAGCCGAGAACATTTAAAAAAAAA
1041 AAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuuAGGGUAGGGGUCCU--UGGGg 5'
             |:|||||||  |||  |||: 
Target 5' tatTTCCATCCCATGGATTACCTa 3'
28 - 51 119.00 -22.00
2
miRNA  3' uuuaggGUAGGGGUCCUUGGGg 5'
                :| :|||||| ||:| 
Target 5' cactggTAATCCCAGGTACTCa 3'
258 - 279 116.00 -18.20
3
miRNA  3' uuUAGGGU--AGGGGUCCUUGGGg 5'
            ||||:|   |::::|||: || 
Target 5' taATCCTAGCGCTTTGGGAGGCCg 3'
127 - 150 114.00 -19.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN18731430 5 COSMIC
COSN30490599 7 COSMIC
COSN31602046 13 COSMIC
COSN32054021 14 COSMIC
COSN19707510 23 COSMIC
COSN30490553 24 COSMIC
COSN30463017 34 COSMIC
COSN30517658 37 COSMIC
COSN30455550 49 COSMIC
COSN30450438 55 COSMIC
COSN30472556 82 COSMIC
COSN1333122 102 COSMIC
COSN27004427 109 COSMIC
COSN31606064 110 COSMIC
COSN14227938 113 COSMIC
COSN28764870 124 COSMIC
COSN30133326 137 COSMIC
COSN30110805 152 COSMIC
COSN30167674 181 COSMIC
COSN4927802 386 COSMIC
COSN9783303 465 COSMIC
COSN20989356 802 COSMIC
COSN31519324 874 COSMIC
COSN26638106 962 COSMIC
COSN24322655 968 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1407246729 1 dbSNP
rs751773617 4 dbSNP
rs537758423 5 dbSNP
rs1329968761 7 dbSNP
rs1489726594 10 dbSNP
rs1024410131 11 dbSNP
rs751154209 14 dbSNP
rs764375388 18 dbSNP
rs777455286 21 dbSNP
rs762718423 29 dbSNP
rs758359513 33 dbSNP
rs1290518602 42 dbSNP
rs752693112 44 dbSNP
rs1472877683 48 dbSNP
rs765055310 49 dbSNP
rs896217963 52 dbSNP
rs1397554851 55 dbSNP
rs1030718128 61 dbSNP
rs999602371 64 dbSNP
rs903497483 67 dbSNP
rs568722297 76 dbSNP
rs1189368594 78 dbSNP
rs1298377467 80 dbSNP
rs927116075 87 dbSNP
rs1388214267 99 dbSNP
rs777878574 100 dbSNP
rs1382410646 101 dbSNP
rs981222287 102 dbSNP
rs1158446537 103 dbSNP
rs567488444 109 dbSNP
rs528685016 110 dbSNP
rs988188819 112 dbSNP
rs1050912673 113 dbSNP
rs1029911550 115 dbSNP
rs1308433650 116 dbSNP
rs934123745 119 dbSNP
rs1374234837 125 dbSNP
rs918674457 127 dbSNP
rs972803290 134 dbSNP
rs569261235 136 dbSNP
rs1269812053 138 dbSNP
rs1480881955 139 dbSNP
rs546300353 146 dbSNP
rs143673611 149 dbSNP
rs563758713 150 dbSNP
rs543769344 151 dbSNP
rs530744623 152 dbSNP
rs1386318520 158 dbSNP
rs561991364 170 dbSNP
rs1319317773 181 dbSNP
rs9394832 182 dbSNP
rs572984623 185 dbSNP
rs1445669890 190 dbSNP
rs1336967270 196 dbSNP
rs1328976519 197 dbSNP
rs1226406994 199 dbSNP
rs1311700209 200 dbSNP
rs1031189494 208 dbSNP
rs1325161829 209 dbSNP
rs1387663315 210 dbSNP
rs9471661 212 dbSNP
rs1329834579 213 dbSNP
rs1456493630 221 dbSNP
rs903547688 222 dbSNP
rs1057035768 235 dbSNP
rs191815065 238 dbSNP
rs780165842 241 dbSNP
rs577377983 242 dbSNP
rs557426484 243 dbSNP
rs1050964661 246 dbSNP
rs1477111952 247 dbSNP
rs1042906839 249 dbSNP
rs933820633 255 dbSNP
rs896962519 260 dbSNP
rs537421052 276 dbSNP
rs1160832234 285 dbSNP
rs1445297869 287 dbSNP
rs568707219 300 dbSNP
rs1401836738 301 dbSNP
rs941435154 309 dbSNP
rs1459023596 319 dbSNP
rs1273686182 328 dbSNP
rs1052386052 330 dbSNP
rs935371129 338 dbSNP
rs1342298753 340 dbSNP
rs922613581 349 dbSNP
rs909925370 351 dbSNP
rs1276198939 352 dbSNP
rs1044368719 359 dbSNP
rs948689582 360 dbSNP
rs1233533181 362 dbSNP
rs976933325 365 dbSNP
rs917503888 369 dbSNP
rs1261663482 373 dbSNP
rs964282394 377 dbSNP
rs993074001 379 dbSNP
rs1329719390 395 dbSNP
rs187341435 397 dbSNP
rs528615647 398 dbSNP
rs1174905925 399 dbSNP
rs1345625865 400 dbSNP
rs1421300663 406 dbSNP
rs1296041295 407 dbSNP
rs1339793606 423 dbSNP
rs952566359 429 dbSNP
rs1275564695 432 dbSNP
rs868013728 440 dbSNP
rs978267031 442 dbSNP
rs1334134334 446 dbSNP
rs1317674517 450 dbSNP
rs1219289563 453 dbSNP
rs146830233 457 dbSNP
rs1404471501 463 dbSNP
rs1022003038 475 dbSNP
rs1200748618 478 dbSNP
rs1173319932 479 dbSNP
rs1439325215 482 dbSNP
rs552338609 484 dbSNP
rs959653069 487 dbSNP
rs953653860 491 dbSNP
rs1035372746 492 dbSNP
rs1359636105 495 dbSNP
rs1425266992 503 dbSNP
rs1030011049 504 dbSNP
rs1325440447 513 dbSNP
rs1347990869 519 dbSNP
rs1434407302 521 dbSNP
rs1274293463 527 dbSNP
rs1001422906 544 dbSNP
rs1242557181 562 dbSNP
rs998084612 563 dbSNP
rs905807891 568 dbSNP
rs566267907 569 dbSNP
rs1043265651 570 dbSNP
rs1450320222 579 dbSNP
rs1011449649 581 dbSNP
rs1209358012 582 dbSNP
rs897003744 584 dbSNP
rs971427924 587 dbSNP
rs1036864558 596 dbSNP
rs1176362703 603 dbSNP
rs1006084500 604 dbSNP
rs935421755 612 dbSNP
rs552322910 613 dbSNP
rs1041038625 616 dbSNP
rs143695492 618 dbSNP
rs1242735718 619 dbSNP
rs948743338 621 dbSNP
rs911517282 635 dbSNP
rs1329549844 636 dbSNP
rs1376356961 656 dbSNP
rs917222451 664 dbSNP
rs1057512537 666 dbSNP
rs1286277026 667 dbSNP
rs1354887246 673 dbSNP
rs952876435 681 dbSNP
rs1258186551 683 dbSNP
rs1458709795 694 dbSNP
rs1196435465 698 dbSNP
rs934907912 698 dbSNP
rs1374552327 700 dbSNP
rs182075759 705 dbSNP
rs978942831 715 dbSNP
rs972451175 718 dbSNP
rs1342276044 724 dbSNP
rs1168425674 725 dbSNP
rs1334920743 733 dbSNP
rs563599361 734 dbSNP
rs1358820752 736 dbSNP
rs1168536893 754 dbSNP
rs1399875809 762 dbSNP
rs1396771392 764 dbSNP
rs959788082 782 dbSNP
rs558945860 784 dbSNP
rs914995626 788 dbSNP
rs985183047 792 dbSNP
rs541516709 806 dbSNP
rs530523216 809 dbSNP
rs953705879 811 dbSNP
rs979789438 811 dbSNP
rs1320539589 812 dbSNP
rs1216291367 819 dbSNP
rs1256817430 823 dbSNP
rs1345343481 826 dbSNP
rs140056867 828 dbSNP
rs1021578278 840 dbSNP
rs77616180 844 dbSNP
rs528327734 847 dbSNP
rs1031485283 849 dbSNP
rs999537983 857 dbSNP
rs1191620956 862 dbSNP
rs1422979459 864 dbSNP
rs1466779038 865 dbSNP
rs1239194355 868 dbSNP
rs901295448 870 dbSNP
rs1041021043 871 dbSNP
rs1015893208 873 dbSNP
rs559604282 877 dbSNP
rs1299144137 885 dbSNP
rs1487700774 892 dbSNP
rs1342961565 896 dbSNP
rs1398671290 902 dbSNP
rs370368214 914 dbSNP
rs1331177468 920 dbSNP
rs1235037328 926 dbSNP
rs1253899505 930 dbSNP
rs1005345359 934 dbSNP
rs1343760010 941 dbSNP
rs1217103237 948 dbSNP
rs1287829105 959 dbSNP
rs1487294606 961 dbSNP
rs865924123 972 dbSNP
rs1261209080 974 dbSNP
rs1433830171 975 dbSNP
rs1218370827 976 dbSNP
rs1376166195 978 dbSNP
rs546005708 981 dbSNP
rs377212482 984 dbSNP
rs1159680057 985 dbSNP
rs1362814395 986 dbSNP
rs918727795 989 dbSNP
rs1422494392 992 dbSNP
rs1023020443 995 dbSNP
rs16895020 996 dbSNP
rs369696948 1003 dbSNP
rs980170401 1004 dbSNP
rs969718746 1016 dbSNP
rs543494629 1018 dbSNP
rs752207550 1021 dbSNP
rs1351224824 1022 dbSNP
rs1338549178 1025 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuuaggguaggggucCUUGGgg 5'
                         ||:||  
Target 5' ggcagaaggggcaguGAGCCga 3'
5 - 26
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000394253.3 | 3UTR | AGGAGGCAGAAGGGGCAGUGAGCCGAGAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.442 2.6e-2 -0.430 2.9e-2 20 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.651 2.9e-2 0.467 1.0e-1 9 Click to see details
GSE19536 Breast cancer -0.186 3.2e-2 -0.161 5.5e-2 100 Click to see details
GSE21032 Prostate cancer 0.201 3.4e-2 0.216 2.5e-2 83 Click to see details
GSE28544 Breast cancer 0.376 3.5e-2 0.302 7.6e-2 24 Click to see details
GSE28260 Renal cortex and medulla 0.502 4.0e-2 0.582 1.8e-2 13 Click to see details
GSE38226 Liver fibrosis 0.382 4.4e-2 0.496 1.1e-2 21 Click to see details
GSE19783 ER- ER- breast cancer -0.138 1.1e-1 -0.147 9.8e-2 79 Click to see details
GSE19783 ER+ ER+ breast cancer -0.251 1.4e-1 -0.227 1.7e-1 20 Click to see details
GSE21687 Ependynoma primary tumors -0.135 1.4e-1 -0.237 3.0e-2 64 Click to see details
GSE19350 CNS germ cell tumors 0.295 1.8e-1 0.292 1.8e-1 12 Click to see details
GSE42095 Differentiated embryonic stem cells 0.124 2.9e-1 0.138 2.7e-1 23 Click to see details
GSE26953 Aortic valvular endothelial cells 0.104 3.1e-1 0.295 8.1e-2 24 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.078 3.6e-1 0.386 2.8e-2 25 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.046 4.1e-1 -0.040 4.2e-1 25 Click to see details
GSE32688 Pancreatic cancer -0.013 4.7e-1 0.036 4.2e-1 32 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
ESCA -0.606 0.02 -0.527 0.05 11 Click to see details
CESC -0.993 0.04 -1.000 0.5 3 Click to see details
KIRP 0.253 0.08 0.130 0.24 32 Click to see details
LIHC -0.227 0.09 -0.274 0.05 38 Click to see details
STAD 0.252 0.1 0.076 0.35 28 Click to see details
BRCA -0.108 0.17 -0.152 0.09 78 Click to see details
CHOL 0.365 0.19 0.619 0.05 8 Click to see details
BLCA -0.238 0.19 -0.335 0.1 16 Click to see details
LUAD -0.229 0.28 -0.367 0.17 9 Click to see details
PCPG 0.639 0.28 0.500 0.33 3 Click to see details
LUSC 0.096 0.28 0.158 0.17 38 Click to see details
KIRC -0.068 0.3 -0.065 0.31 62 Click to see details
KICH 0.122 0.3 0.174 0.23 20 Click to see details
COAD -0.214 0.31 0.048 0.46 8 Click to see details
HNSC 0.062 0.35 0.038 0.41 40 Click to see details
THCA 0.042 0.38 0.095 0.24 59 Click to see details
PAAD -0.207 0.4 -0.800 0.1 4 Click to see details
UCEC 0.021 0.47 -0.144 0.28 19 Click to see details
PRAD 0.008 0.49 -0.060 0.4 19 Click to see details
PRAD 0.008 0.49 -0.060 0.4 19 Click to see details
PRAD 0.008 0.49 -0.060 0.4 19 Click to see details
131 hsa-miR-23a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT038958 ATF1 activating transcription factor 1 1 1
MIRT057661 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT395438 NFKBID NFKB inhibitor delta 2 2
MIRT463884 WNT7B Wnt family member 7B 2 4
MIRT475804 HDGF heparin binding growth factor 2 2
MIRT478528 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT479278 CHD4 chromodomain helicase DNA binding protein 4 2 6
MIRT492564 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT500353 ZNF385A zinc finger protein 385A 2 2
MIRT509788 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT511566 HIST3H2BB histone cluster 3 H2B family member b 2 4
MIRT525450 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539558 CNKSR3 CNKSR family member 3 2 4
MIRT540034 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540225 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT540242 RGS17 regulator of G protein signaling 17 2 2
MIRT540871 ZBTB24 zinc finger and BTB domain containing 24 2 2
MIRT559065 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT560685 HIST1H1T histone cluster 1 H1 family member t 2 2
MIRT565593 SLC35G1 solute carrier family 35 member G1 2 2
MIRT565642 SKI SKI proto-oncogene 2 2
MIRT576747 Tmem127 transmembrane protein 127 2 2
MIRT607712 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT615682 NAV2 neuron navigator 2 2 2
MIRT617337 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT617378 FAM227A family with sequence similarity 227 member A 2 2
MIRT620855 SERPING1 serpin family G member 1 2 2
MIRT625112 SLC1A5 solute carrier family 1 member 5 2 2
MIRT625124 NUP93 nucleoporin 93 2 2
MIRT625898 LINC00632 long intergenic non-protein coding RNA 632 2 2
MIRT626016 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626481 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT626573 MED7 mediator complex subunit 7 2 2
MIRT626814 PRR11 proline rich 11 2 2
MIRT628136 HM13 histocompatibility minor 13 2 2
MIRT630771 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT633133 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT636950 APTX aprataxin 2 2
MIRT637802 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT638622 GSR glutathione-disulfide reductase 2 4
MIRT642196 SMAGP small cell adhesion glycoprotein 2 2
MIRT645121 HES2 hes family bHLH transcription factor 2 2 2
MIRT645344 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT646564 ALDH5A1 aldehyde dehydrogenase 5 family member A1 2 2
MIRT649243 TRIM65 tripartite motif containing 65 2 2
MIRT651810 USP49 ubiquitin specific peptidase 49 2 2
MIRT652137 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT652668 TIMELESS timeless circadian clock 2 2
MIRT655894 NEK9 NIMA related kinase 9 2 2
MIRT656564 LYRM7 LYR motif containing 7 2 2
MIRT657194 IKZF3 IKAROS family zinc finger 3 2 2
MIRT657907 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT660207 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660619 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT660826 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT660986 ABHD2 abhydrolase domain containing 2 2 2
MIRT662232 PGBD4 piggyBac transposable element derived 4 2 2
MIRT663691 ZNF347 zinc finger protein 347 2 2
MIRT665577 TUBD1 tubulin delta 1 2 2
MIRT666149 SP2 Sp2 transcription factor 2 2
MIRT666310 SLC22A3 solute carrier family 22 member 3 2 2
MIRT666457 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT667716 KIAA1468 KIAA1468 2 2
MIRT668329 FKBP5 FK506 binding protein 5 2 2
MIRT668370 FBXO47 F-box protein 47 2 2
MIRT669304 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT669538 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT671681 ADK adenosine kinase 2 2
MIRT672177 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT673604 HPSE heparanase 2 2
MIRT673749 ZNF333 zinc finger protein 333 2 2
MIRT674807 FAM229B family with sequence similarity 229 member B 2 2
MIRT675286 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675391 SVOP SV2 related protein 2 2
MIRT675788 MED28 mediator complex subunit 28 2 2
MIRT676151 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676499 GJD3 gap junction protein delta 3 2 2
MIRT676621 CSNK1E casein kinase 1 epsilon 2 2
MIRT676644 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT676711 METTL14 methyltransferase like 14 2 2
MIRT676809 SHROOM4 shroom family member 4 2 2
MIRT677036 FOXO3 forkhead box O3 2 2
MIRT677062 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT677086 SMIM15 small integral membrane protein 15 2 2
MIRT677193 MURC caveolae associated protein 4 2 2
MIRT677273 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT677345 POC1A POC1 centriolar protein A 2 2
MIRT677504 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677526 OCIAD2 OCIA domain containing 2 2 2
MIRT677661 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT677727 SSR1 signal sequence receptor subunit 1 2 2
MIRT677803 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT678144 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678376 VTA1 vesicle trafficking 1 2 2
MIRT678708 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT678868 FAM118A family with sequence similarity 118 member A 2 2
MIRT679039 LACTB lactamase beta 2 2
MIRT679081 PURB purine rich element binding protein B 2 2
MIRT679137 SYK spleen associated tyrosine kinase 2 2
MIRT679299 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679741 CABP4 calcium binding protein 4 2 2
MIRT679946 AS3MT arsenite methyltransferase 2 2
MIRT679976 E2F2 E2F transcription factor 2 2 2
MIRT683628 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT683901 PSMB9 proteasome subunit beta 9 2 2
MIRT684172 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684231 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT685403 C1orf158 chromosome 1 open reading frame 158 2 2
MIRT686253 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT687513 NCKAP1 NCK associated protein 1 2 2
MIRT688243 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688315 FAM151B family with sequence similarity 151 member B 2 2
MIRT688733 CNDP1 carnosine dipeptidase 1 2 2
MIRT689031 ANGPTL3 angiopoietin like 3 2 2
MIRT698207 TMEM248 transmembrane protein 248 2 2
MIRT699859 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT709954 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT711541 MSH3 mutS homolog 3 2 2
MIRT712077 WDR37 WD repeat domain 37 2 2
MIRT715312 POLR2E RNA polymerase II subunit E 2 2
MIRT715725 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT715748 HSD11B1L hydroxysteroid 11-beta dehydrogenase 1 like 2 2
MIRT717604 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717875 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT718042 NIPAL2 NIPA like domain containing 2 2 2
MIRT718829 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT724037 CAMK2N2 calcium/calmodulin dependent protein kinase II inhibitor 2 2 2
MIRT733305 TNF tumor necrosis factor 1 0
MIRT734941 HSPA1B heat shock protein family A (Hsp70) member 1B 3 0
MIRT737343 IGF2 insulin like growth factor 2 3 0
MIRT737546 PTEN phosphatase and tensin homolog 2 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-23a 1'-Acetoxychavicol acetate (ACA) NULL 119104 Microarray HN4 cell line 24317043 2014 down-regulated
miR-23a 5-Fluorouracil approved 3385 Quantitative real-time PCR colon cancer cells 17702597 2007 up-regulated
miR-23a Curcumin NULL 969516 Microarray BxPC-3 human pancreatic carcinoma cell line 18347134 2008 up-regulated
miR-23a Enoxacin approved 3229 Quantitative real-time PCR HEK293 cells 18641635 2008 up-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Quantitative real-time PCR endometrial stromal 19088369 2008 down-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Quantitative real-time PCR glandular epithelial cells 19088369 2008 down-regulated
miR-23a Medroxyprogesterone acetate approved 6279 Quantitative real-time PCR endometrial stromal 19088369 2008 down-regulated
miR-23a Medroxyprogesterone acetate approved 6279 Quantitative real-time PCR glandular epithelial cells 19088369 2008 up-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Microarray MCF-7 breast cancer cells 19528081 2009 up-regulated
miR-23a Diethylstilbestrol approved 448537 Microarray mammosphere-derived epithelial cells (MDEC) 19549897 2009 down-regulated
miR-23a Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-23a Bio-Oss NULL NULL Microarray osteoblast-like cell line (MG63) 20224834 2010 up-regulated
miR-23a Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-23a 5-Fluorouracil approved 3385 Microarray MCF-7 breast cancer cells 21506117 2011 up-regulated
miR-23a Trastuzumab approved NULL Microarray BT474 cells 22384020 2012 up-regulated
miR-23a Trastuzumab approved NULL Microarray SKBR3 cells. 22384020 2012 up-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Quantitative real-time PCR thymus 23024791 2012 down-regulated
miR-23a Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-23a Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse liver 19270793 2009 up-regulated
miR-23a Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 up-regualted
miR-23a Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 down-regulated
miR-23a Comfrey NULL 6440495 Microarray rat liver 21370286 2011 up-regulated
miR-23a Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-23a Ethanol NULL 702 Quantitative real-time PCR zebrafish embryos 22298809 2012 down-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Microarray embryos 22921993 2012 up-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Microarray embryos 22921993 2012 up-regulated
miR-23a Morphine approved 5288826 Microarray human monocyte-derived macrophages (h-mdms) infection with HIV-1 20564181 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive Low Breast Cancer cell line (MDA-MB-231)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (BGC823)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (SGC-7901)
hsa-mir-23a Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-mir-23a Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-23a Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive cell line (OE19)
hsa-mir-23a Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-23a Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive cell line (SGC-7901)
hsa-miR-23a-5p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-23a-5p Palbociclib 5330286 NSC758247 approved resistant High Breast Cancer cell line (T47D)
hsa-miR-23a-5p Arsenic trioxide 261004 NSC759274 approved sensitive Low Acute Myeloid Leukemia cell line (U937, Kasumi-1, THP-1, Jurkat E6.1, SUP B15)
hsa-miR-23a-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-23a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-23a-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (CAL-27) (total RNA)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-23a-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-23a-5p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-23a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-23a-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-23a-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-23a-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-23a-5p Oxaliplatin 6857599 NSC266046 approved resistant cell line (IGROV-1)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (IGROV-1)
hsa-miR-23a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (MDA-231)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)
hsa-miR-23a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-23a-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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