pre-miRNA Information
pre-miRNA hsa-mir-4433a   
Genomic Coordinates chr2: 64340759 - 64340839
Description Homo sapiens miR-4433a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4433a-3p
Sequence 51| ACAGGAGUGGGGGUGGGACAU |71
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs751480515 9 dbSNP
rs557760377 15 dbSNP
rs1479580865 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol UBE2N   
Synonyms HEL-S-71, UBC13, UBCHBEN; UBC13, UbcH-ben, UbcH13
Description ubiquitin conjugating enzyme E2 N
Transcript NM_003348   
Expression
Putative miRNA Targets on UBE2N
3'UTR of UBE2N
(miRNA target sites are highlighted)
>UBE2N|NM_003348|3'UTR
   1 ATTGATACGATCATCAAGTGTGCATCACTTCTCCTGTTCTGCCAAGACTTCCTCCTCTTTGTTTGCATTTAATGGACACA
  81 GTCTTAGAAACATTACAGAATAAAAAAGCCCAGACATCTTCAGTCCTTTGGTGATTAAATGCACATTAGCAAATCTATGT
 161 CTTGTCCTGATTCACTGTCATAAAGCATGAGCAGAGGCTAGAAGTATCATCTGGATTGTTGTGAAACGTTTAAAAGCAGT
 241 GGCCCCTCCCTGCTTTTATTCATTTCCCCCATCCTGGTTTAAGTATAAAGCACTGTGAATGAAGGTAGTTGTCAGGTTAG
 321 CTGCAGGGGTGTGGGTGTTTTTATTTTATTTTATTTTATTTTATTTTTGAGGGGGGAGGTAGTTTAATTTTATGGGCTCC
 401 TTTCCCCCTTTTTTGGTGATCTAATTGCATTGGTTAAAAGCAGCTAACCAGGTCTTTAGAATATGCTCTAGCCAAGTCTA
 481 ACTTTATTTAGACGCTGTAGATGGACAAGCTTGATTGTTGGAACCAAAATGGGAACATTAAACAAACATCACAGCCCTCA
 561 CTAATAACATTGCTGTCAAGTGTAGATTCCCCCCTTCAAAAAAAGCTTGTGACCATTTTGTATGGCTTGTCTGGAAACTT
 641 CTGTAAATCTTATGTTTTAGTAAAATATTTTTTGTTATTCTACTTTGCCTTTGTACAGTTTATTTTACTGTGTTTATTTC
 721 ATTTTCCCAATTTGACAATCGTATTTTAAAATTGAAACTGATGGAACATTCTTTCTTGGTCTTCACCATCTGACAAATTG
 801 AATGGCAAGAGGTGGATTTTGCCAGTTTCTTTTCACTGATGCAGATTTGTGTTAAGATAGTACTGAATGGAGTATTTATA
 881 AACTGGCCCTGAGCATGCATAAAGCATCAGTATCTGACCTTTTTTTAACCTTCTAGGAATTTGAAATAAATGTGTTTGTG
 961 TTGTCTGATTAGATGATCATTGGTGTCTTGCCACAATGTTTAAAAATTACTGTACAGGAAAGTCACAGCAAAGATAGCAG
1041 TTGTGACTGACATGTAGGACTTTCACAGTTGTGCCACATTTTTGCCTAAAATTTGGGTTATGACATTTTTCTTGGTTCTT
1121 ATCTGAAAATTTCATCTGTAACCTTTCATGTGTGTTAAGAAACACTGATCTGATCATTTGGGATTTGCTGAGGCATTTGT
1201 GAGTCTTCCTTATAAACCTGATGAGCAGATCTCAACTATCTAGCTTGTGTGTCATCAGAAAGGTTTATCCCTTTGAGAGT
1281 ATCAAGTCCTCAGTTAATGATTCTTGCTTTCATCCCTCCAGTATTTGCTGTGGGAGCTCGTTTTATTCTTTAATTTGGAA
1361 TTCAGTAATTTTTCTTCTTTATTGACGAATTCCTCCCCTCACAAAACTGTTCTTTCCCACCTCTCTCCATATCTAATTCC
1441 TGATTCTTGTTATTTTTAAGTCATAAATGTAGCCAGTCATAAATACATAAATGTTAACCTTCGGGTTGCAACCTTGTCTC
1521 TTGCAGTTTAAGGTAATGGATATTGTAGCCCATTTGAATTTTCTTCACTCTTATTCTCGTAATTCTGGAGTTTCTTCAGA
1601 TTGTGGTGTATTTTATTGTGCTCCTATGTAAGATGAAGAATTAACTATTAAAATTACATTTTCAACATACAAAAGCTTTT
1681 GATGACTGGTAACTGGTATCCTTCCAAATAAATGCATTGCTTGGTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uacAG-GGUG-GGGGUGAGGACa 5'
             || |||: :|: |:||||| 
Target 5' ctcTCTCCATATCTAATTCCTGa 3'
1421 - 1443 138.00 -15.40
2
miRNA  3' uacaggGUGGGGGUGAGGACa 5'
                ||:| |: |||||| 
Target 5' agtgtgCATCACTTCTCCTGt 3'
17 - 37 127.00 -16.90
3
miRNA  3' uaCAGGGUGGG--GGUGAGGACa 5'
            | |::::|:    |||:||| 
Target 5' atGGCTTGTCTGGAAACTTCTGt 3'
622 - 644 125.00 -14.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN14597999 8 COSMIC
COSN30168962 98 COSMIC
COSN13425395 112 COSMIC
COSN30135612 124 COSMIC
COSN31587474 155 COSMIC
COSN31542526 175 COSMIC
COSN30167639 261 COSMIC
COSN26668359 274 COSMIC
COSN31541001 336 COSMIC
COSN30110984 338 COSMIC
COSN19551831 339 COSMIC
COSN30121942 358 COSMIC
COSN31516059 361 COSMIC
COSN26571233 363 COSMIC
COSN26644277 395 COSMIC
COSN30173291 452 COSMIC
COSN31520845 459 COSMIC
COSN31595919 567 COSMIC
COSN31595916 597 COSMIC
COSN31567464 646 COSMIC
COSN31524063 661 COSMIC
COSN26668073 667 COSMIC
COSN19325056 761 COSMIC
COSN31585348 829 COSMIC
COSN32058588 926 COSMIC
COSN26635705 929 COSMIC
COSN17131960 1244 COSMIC
COSN32088587 1395 COSMIC
COSN1594182 1903 COSMIC
COSN32088586 2121 COSMIC
COSN5871208 3035 COSMIC
COSN16579714 3110 COSMIC
COSN23189726 3792 COSMIC
COSN23189328 3794 COSMIC
COSN1594180 3839 COSMIC
COSN20731842 4112 COSMIC
COSN29550798 4155 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs146107137 1 dbSNP
rs1389279986 7 dbSNP
rs745829441 8 dbSNP
rs752340935 8 dbSNP
rs1370831800 9 dbSNP
rs767429440 10 dbSNP
rs773664444 17 dbSNP
rs993437560 20 dbSNP
rs759405179 21 dbSNP
rs1228428281 33 dbSNP
rs1311489773 34 dbSNP
rs370542398 35 dbSNP
rs201199367 36 dbSNP
rs770631026 36 dbSNP
rs1163596627 37 dbSNP
rs766399603 41 dbSNP
rs1464822382 43 dbSNP
rs1366530013 46 dbSNP
rs761995234 51 dbSNP
rs1207328284 52 dbSNP
rs1239750713 54 dbSNP
rs1483578765 60 dbSNP
rs1181367964 61 dbSNP
rs111847364 66 dbSNP
rs529954161 67 dbSNP
rs1366062945 73 dbSNP
rs1174333243 75 dbSNP
rs1412503860 80 dbSNP
rs1456529723 86 dbSNP
rs1037987947 98 dbSNP
rs1433030549 102 dbSNP
rs1006170751 114 dbSNP
rs189963688 116 dbSNP
rs1050296265 137 dbSNP
rs1201917556 140 dbSNP
rs1411324645 147 dbSNP
rs539238615 155 dbSNP
rs185386395 157 dbSNP
rs922985274 166 dbSNP
rs1281268838 173 dbSNP
rs535250425 173 dbSNP
rs566129028 179 dbSNP
rs1262481605 201 dbSNP
rs1235844834 207 dbSNP
rs1230787558 209 dbSNP
rs1183106479 213 dbSNP
rs1251404386 220 dbSNP
rs1472105010 221 dbSNP
rs1175283486 222 dbSNP
rs1311430321 227 dbSNP
rs1301510198 228 dbSNP
rs1406342839 229 dbSNP
rs1431132205 232 dbSNP
rs1308187617 238 dbSNP
rs552851496 240 dbSNP
rs35415779 241 dbSNP
rs1277039769 243 dbSNP
rs1296969542 246 dbSNP
rs748287246 247 dbSNP
rs532669106 249 dbSNP
rs1387766821 250 dbSNP
rs1344358811 252 dbSNP
rs990138033 260 dbSNP
rs563744475 263 dbSNP
rs958341008 270 dbSNP
rs1179392522 271 dbSNP
rs34704075 271 dbSNP
rs1465830698 285 dbSNP
rs1248287675 291 dbSNP
rs569001583 314 dbSNP
rs151131121 316 dbSNP
rs143190704 326 dbSNP
rs1024977575 335 dbSNP
rs993552151 343 dbSNP
rs1350784201 357 dbSNP
rs752099432 361 dbSNP
rs1016305658 363 dbSNP
rs1050782137 368 dbSNP
rs527860095 368 dbSNP
rs889067850 368 dbSNP
rs1337667779 369 dbSNP
rs1211911114 372 dbSNP
rs149103079 374 dbSNP
rs1041482012 375 dbSNP
rs1251043101 381 dbSNP
rs192648563 385 dbSNP
rs1198707574 386 dbSNP
rs1188606718 393 dbSNP
rs1482899684 394 dbSNP
rs945820305 396 dbSNP
rs1474153517 407 dbSNP
rs1164601206 413 dbSNP
rs766501094 417 dbSNP
rs1414073632 423 dbSNP
rs1256330205 428 dbSNP
rs1225122228 431 dbSNP
rs34880795 435 dbSNP
rs1405079248 451 dbSNP
rs1315621205 452 dbSNP
rs892777876 453 dbSNP
rs531682798 457 dbSNP
rs1319951143 459 dbSNP
rs1218708349 461 dbSNP
rs1378351426 466 dbSNP
rs1803750 468 dbSNP
rs775252659 480 dbSNP
rs937016882 486 dbSNP
rs750431906 488 dbSNP
rs374372794 493 dbSNP
rs1232449423 494 dbSNP
rs1271080583 500 dbSNP
rs1466180633 510 dbSNP
rs1209223282 516 dbSNP
rs559254453 520 dbSNP
rs1395914977 528 dbSNP
rs1403539918 529 dbSNP
rs1339036548 538 dbSNP
rs1189036952 547 dbSNP
rs1237684465 557 dbSNP
rs546081642 561 dbSNP
rs1399830817 563 dbSNP
rs980993732 565 dbSNP
rs949522478 572 dbSNP
rs1158985226 573 dbSNP
rs1366741942 584 dbSNP
rs918117990 589 dbSNP
rs1335006563 593 dbSNP
rs972119708 599 dbSNP
rs1423107685 612 dbSNP
rs1330899197 620 dbSNP
rs643636 621 dbSNP
rs1228785824 622 dbSNP
rs564455412 624 dbSNP
rs1260015459 625 dbSNP
rs981137159 629 dbSNP
rs577167836 632 dbSNP
rs1278765489 636 dbSNP
rs1185290052 642 dbSNP
rs1485129152 642 dbSNP
rs1456330320 643 dbSNP
rs574299 648 dbSNP
rs1253568622 653 dbSNP
rs1256996929 654 dbSNP
rs643258 660 dbSNP
rs1181978097 662 dbSNP
rs643247 667 dbSNP
rs1196068163 679 dbSNP
rs188599636 682 dbSNP
rs775200382 687 dbSNP
rs951282311 689 dbSNP
rs537489429 691 dbSNP
rs1432973044 693 dbSNP
rs995289759 693 dbSNP
rs1351353654 694 dbSNP
rs1410196231 694 dbSNP
rs1281852483 700 dbSNP
rs1243444310 702 dbSNP
rs1333879695 705 dbSNP
rs953520363 706 dbSNP
rs1341576716 709 dbSNP
rs1256543588 718 dbSNP
rs1317863191 721 dbSNP
rs898371950 738 dbSNP
rs1346473328 740 dbSNP
rs1208114625 741 dbSNP
rs1028873880 742 dbSNP
rs1483215655 751 dbSNP
rs1195558263 752 dbSNP
rs997440336 767 dbSNP
rs901675509 771 dbSNP
rs1444986310 777 dbSNP
rs1020154888 778 dbSNP
rs1452595653 781 dbSNP
rs1010390085 794 dbSNP
rs183521994 796 dbSNP
rs1297375302 798 dbSNP
rs1394009324 804 dbSNP
rs1388333684 812 dbSNP
rs1301818958 824 dbSNP
rs1332488009 825 dbSNP
rs145013241 827 dbSNP
rs1231429819 834 dbSNP
rs896577894 836 dbSNP
rs1342404382 842 dbSNP
rs1226176788 847 dbSNP
rs1249289674 849 dbSNP
rs1489632128 856 dbSNP
rs1056447913 858 dbSNP
rs936984491 862 dbSNP
rs191289755 863 dbSNP
rs1467579007 868 dbSNP
rs781377469 870 dbSNP
rs1015547804 875 dbSNP
rs935355938 880 dbSNP
rs924176621 881 dbSNP
rs1428021707 882 dbSNP
rs1168555904 887 dbSNP
rs1370426242 897 dbSNP
rs1385784446 904 dbSNP
rs1045283813 907 dbSNP
rs1185391672 908 dbSNP
rs1293959350 908 dbSNP
rs1044035727 909 dbSNP
rs918067059 910 dbSNP
rs1322491577 914 dbSNP
rs1237291844 927 dbSNP
rs1269197237 927 dbSNP
rs114331208 929 dbSNP
rs922056584 932 dbSNP
rs1323200872 942 dbSNP
rs1245983395 949 dbSNP
rs1287365044 952 dbSNP
rs975328759 953 dbSNP
rs759459616 964 dbSNP
rs774419854 970 dbSNP
rs1249228111 978 dbSNP
rs1359582510 988 dbSNP
rs909272929 992 dbSNP
rs1238545266 996 dbSNP
rs912323645 998 dbSNP
rs953369961 1007 dbSNP
rs1165346065 1034 dbSNP
rs986469696 1035 dbSNP
rs558839499 1037 dbSNP
rs1459706037 1044 dbSNP
rs1161198192 1048 dbSNP
rs78184142 1051 dbSNP
rs1310365367 1055 dbSNP
rs1429397206 1063 dbSNP
rs1025511821 1070 dbSNP
rs1444834429 1075 dbSNP
rs774675020 1087 dbSNP
rs975980729 1094 dbSNP
rs1396301649 1097 dbSNP
rs1292322110 1100 dbSNP
rs570059090 1104 dbSNP
rs1353913309 1105 dbSNP
rs774045155 1114 dbSNP
rs1329549460 1115 dbSNP
rs114629734 1121 dbSNP
rs80282991 1122 dbSNP
rs1483631330 1123 dbSNP
rs1367584684 1141 dbSNP
rs1023440363 1147 dbSNP
rs1187441634 1149 dbSNP
rs1156957472 1150 dbSNP
rs1417709355 1152 dbSNP
rs1379626573 1154 dbSNP
rs892962554 1156 dbSNP
rs1408620580 1166 dbSNP
rs1012514607 1169 dbSNP
rs1158913263 1172 dbSNP
rs896552636 1173 dbSNP
rs187564458 1176 dbSNP
rs1360344132 1196 dbSNP
rs1244590851 1208 dbSNP
rs1035545857 1213 dbSNP
rs1197785715 1213 dbSNP
rs1373257853 1215 dbSNP
rs1490417586 1215 dbSNP
rs183827081 1219 dbSNP
rs1213834576 1227 dbSNP
rs528127135 1229 dbSNP
rs902555972 1231 dbSNP
rs193299810 1238 dbSNP
rs1343366470 1240 dbSNP
rs896711640 1242 dbSNP
rs1224308076 1253 dbSNP
rs1484182783 1270 dbSNP
rs769381081 1281 dbSNP
rs1233299956 1285 dbSNP
rs946921871 1291 dbSNP
rs1427215765 1295 dbSNP
rs940829461 1300 dbSNP
rs900772792 1316 dbSNP
rs1431316135 1321 dbSNP
rs1049136610 1323 dbSNP
rs1296353232 1335 dbSNP
rs1354246049 1336 dbSNP
rs1399537171 1337 dbSNP
rs1039183740 1340 dbSNP
rs149938511 1351 dbSNP
rs912304247 1358 dbSNP
rs976052785 1368 dbSNP
rs1301426417 1374 dbSNP
rs1344566420 1376 dbSNP
rs986992035 1377 dbSNP
rs1272565377 1379 dbSNP
rs1436971192 1380 dbSNP
rs532344393 1380 dbSNP
rs1202207215 1381 dbSNP
rs929728596 1382 dbSNP
rs918217588 1386 dbSNP
rs747803618 1387 dbSNP
rs1392662282 1389 dbSNP
rs1430994947 1396 dbSNP
rs1190863530 1401 dbSNP
rs1168097422 1403 dbSNP
rs1487714710 1406 dbSNP
rs113958401 1407 dbSNP
rs1218625559 1408 dbSNP
rs962581386 1416 dbSNP
rs1441218776 1417 dbSNP
rs1023999516 1418 dbSNP
rs1033299625 1423 dbSNP
rs1224520086 1424 dbSNP
rs1001272032 1425 dbSNP
rs1269774205 1426 dbSNP
rs1276610487 1429 dbSNP
rs990658485 1431 dbSNP
rs118054246 1446 dbSNP
rs1218055432 1446 dbSNP
rs960857649 1447 dbSNP
rs1335256284 1449 dbSNP
rs1251100883 1453 dbSNP
rs1465823415 1455 dbSNP
rs1193342030 1463 dbSNP
rs781476188 1465 dbSNP
rs11107016 1472 dbSNP
rs1024018851 1484 dbSNP
rs1165350898 1492 dbSNP
rs554640828 1502 dbSNP
rs1013849220 1503 dbSNP
rs999571951 1505 dbSNP
rs1391496123 1511 dbSNP
rs560751043 1513 dbSNP
rs1432757746 1514 dbSNP
rs1324900438 1518 dbSNP
rs1450402630 1519 dbSNP
rs1357361730 1525 dbSNP
rs1022281111 1529 dbSNP
rs1271173588 1535 dbSNP
rs541521284 1542 dbSNP
rs747313702 1549 dbSNP
rs900740259 1550 dbSNP
rs1283014122 1551 dbSNP
rs969325727 1552 dbSNP
rs1335772388 1573 dbSNP
rs1444792848 1574 dbSNP
rs1039727152 1575 dbSNP
rs1189539208 1576 dbSNP
rs780540143 1578 dbSNP
rs887934578 1579 dbSNP
rs1475056002 1581 dbSNP
rs11558878 1585 dbSNP
rs944887804 1586 dbSNP
rs572411507 1591 dbSNP
rs1049725137 1602 dbSNP
rs1487937514 1608 dbSNP
rs890578321 1616 dbSNP
rs1168147949 1617 dbSNP
rs1047891216 1625 dbSNP
rs1286326689 1626 dbSNP
rs1419551982 1627 dbSNP
rs1313664556 1638 dbSNP
rs1375124053 1642 dbSNP
rs559003295 1645 dbSNP
rs929697564 1664 dbSNP
rs918355264 1675 dbSNP
rs538872467 1691 dbSNP
rs1037984345 1695 dbSNP
rs1278888657 1698 dbSNP
rs1347869385 1707 dbSNP
rs913271760 1709 dbSNP
rs988743387 1714 dbSNP
rs146590886 1715 dbSNP
rs1209168147 1723 dbSNP
rs1253171839 1729 dbSNP
rs1420058982 1730 dbSNP
rs758865407 1733 dbSNP
rs1362595015 1736 dbSNP
rs991184369 1737 dbSNP
rs960659832 1746 dbSNP
rs980311447 1749 dbSNP
rs927754344 1753 dbSNP
rs1433156902 1766 dbSNP
rs1023969542 1767 dbSNP
rs1391788988 1773 dbSNP
rs1013966690 1774 dbSNP
rs542501784 1776 dbSNP
rs1333956925 1788 dbSNP
rs1235807588 1792 dbSNP
rs1303587666 1797 dbSNP
rs1275124090 1800 dbSNP
rs961020349 1804 dbSNP
rs541889672 1810 dbSNP
rs750529008 1812 dbSNP
rs1481138224 1814 dbSNP
rs12822459 1817 dbSNP
rs12821957 1818 dbSNP
rs1470273668 1820 dbSNP
rs1314382624 1822 dbSNP
rs1252389937 1846 dbSNP
rs144241861 1847 dbSNP
rs1005123193 1849 dbSNP
rs866951735 1854 dbSNP
rs879626874 1860 dbSNP
rs1462283956 1861 dbSNP
rs12821933 1866 dbSNP
rs777369545 1878 dbSNP
rs1167146883 1881 dbSNP
rs1022416923 1883 dbSNP
rs765280850 1891 dbSNP
rs1326509659 1892 dbSNP
rs1369564741 1893 dbSNP
rs1027924667 1895 dbSNP
rs1297252134 1902 dbSNP
rs139525168 1903 dbSNP
rs757463960 1906 dbSNP
rs1250038150 1907 dbSNP
rs1017604502 1910 dbSNP
rs1461139492 1912 dbSNP
rs150815057 1922 dbSNP
rs1214792062 1925 dbSNP
rs890725403 1929 dbSNP
rs1467154334 1930 dbSNP
rs1188405939 1932 dbSNP
rs1171884325 1940 dbSNP
rs1047863360 1956 dbSNP
rs751647245 1964 dbSNP
rs188291931 1969 dbSNP
rs891778242 1970 dbSNP
rs1184799283 1972 dbSNP
rs376669439 1976 dbSNP
rs1459388799 1977 dbSNP
rs896899259 1979 dbSNP
rs565684259 1986 dbSNP
rs1381246284 1989 dbSNP
rs1293002746 1998 dbSNP
rs1236688017 2003 dbSNP
rs372751723 2008 dbSNP
rs1481048126 2015 dbSNP
rs1273082571 2018 dbSNP
rs1253361532 2027 dbSNP
rs941034156 2028 dbSNP
rs925837624 2029 dbSNP
rs1203544880 2035 dbSNP
rs979988286 2038 dbSNP
rs916193374 2040 dbSNP
rs1476054692 2048 dbSNP
rs1188443957 2049 dbSNP
rs1321239987 2053 dbSNP
rs1422046842 2053 dbSNP
rs1054808413 2061 dbSNP
rs1345198378 2062 dbSNP
rs1452469222 2066 dbSNP
rs1295908545 2068 dbSNP
rs1376951001 2078 dbSNP
rs917114159 2086 dbSNP
rs1293131946 2089 dbSNP
rs754088165 2090 dbSNP
rs1354098082 2098 dbSNP
rs1225914587 2101 dbSNP
rs1308340890 2103 dbSNP
rs552227686 2105 dbSNP
rs1361546883 2107 dbSNP
rs1237041316 2112 dbSNP
rs1306729514 2112 dbSNP
rs765267798 2114 dbSNP
rs532383319 2121 dbSNP
rs1373597406 2122 dbSNP
rs575215399 2126 dbSNP
rs1211317218 2128 dbSNP
rs1299562971 2129 dbSNP
rs1482156094 2133 dbSNP
rs141586817 2134 dbSNP
rs1408656544 2135 dbSNP
rs1417977801 2136 dbSNP
rs1156346245 2140 dbSNP
rs966568382 2143 dbSNP
rs984169399 2155 dbSNP
rs952415133 2181 dbSNP
rs1028291309 2189 dbSNP
rs996466790 2190 dbSNP
rs900671191 2196 dbSNP
rs1019148809 2199 dbSNP
rs915326339 2212 dbSNP
rs1008971207 2213 dbSNP
rs1348706162 2221 dbSNP
rs1252890543 2227 dbSNP
rs112504286 2228 dbSNP
rs1278499398 2238 dbSNP
rs891843075 2239 dbSNP
rs1053224969 2242 dbSNP
rs558669534 2262 dbSNP
rs148804133 2266 dbSNP
rs1480306240 2270 dbSNP
rs1488292467 2279 dbSNP
rs1269651610 2289 dbSNP
rs904530589 2297 dbSNP
rs1254267591 2300 dbSNP
rs1454333360 2301 dbSNP
rs1044283229 2306 dbSNP
rs1422645037 2307 dbSNP
rs948677931 2325 dbSNP
rs964830671 2326 dbSNP
rs1017992115 2336 dbSNP
rs34934936 2337 dbSNP
rs1445139573 2341 dbSNP
rs1008917360 2344 dbSNP
rs1490804726 2345 dbSNP
rs1283874319 2355 dbSNP
rs529971319 2357 dbSNP
rs1238016716 2358 dbSNP
rs992593157 2362 dbSNP
rs1273276538 2363 dbSNP
rs939888679 2366 dbSNP
rs908249715 2370 dbSNP
rs1217074414 2376 dbSNP
rs759389384 2386 dbSNP
rs12816436 2387 dbSNP
rs1406304096 2390 dbSNP
rs1026555533 2394 dbSNP
rs1028030879 2398 dbSNP
rs1476225100 2404 dbSNP
rs1186760007 2405 dbSNP
rs1288838255 2414 dbSNP
rs993620527 2416 dbSNP
rs974975724 2419 dbSNP
rs144380439 2420 dbSNP
rs1167672748 2433 dbSNP
rs1395916956 2438 dbSNP
rs964989310 2442 dbSNP
rs12311641 2446 dbSNP
rs144039269 2447 dbSNP
rs1430266003 2450 dbSNP
rs1431680590 2458 dbSNP
rs894909517 2459 dbSNP
rs1339549730 2460 dbSNP
rs956233154 2464 dbSNP
rs772888229 2468 dbSNP
rs576250034 2474 dbSNP
rs1208717545 2479 dbSNP
rs1000319837 2481 dbSNP
rs1448228123 2486 dbSNP
rs1260901850 2488 dbSNP
rs1241182563 2490 dbSNP
rs1190562351 2494 dbSNP
rs1419203716 2495 dbSNP
rs1475200299 2508 dbSNP
rs904519543 2528 dbSNP
rs1044398634 2534 dbSNP
rs769341783 2535 dbSNP
rs73216891 2539 dbSNP
rs781688702 2540 dbSNP
rs1262200627 2545 dbSNP
rs1042367453 2547 dbSNP
rs536556825 2562 dbSNP
rs1314558083 2565 dbSNP
rs544677099 2575 dbSNP
rs1243893513 2578 dbSNP
rs1283600542 2582 dbSNP
rs1352155080 2583 dbSNP
rs989339912 2588 dbSNP
rs1224781623 2591 dbSNP
rs1223904399 2596 dbSNP
rs1337838622 2597 dbSNP
rs1294261537 2608 dbSNP
rs768124096 2609 dbSNP
rs910662656 2611 dbSNP
rs987866196 2614 dbSNP
rs1185993437 2618 dbSNP
rs1048619051 2619 dbSNP
rs931103287 2622 dbSNP
rs1158107558 2623 dbSNP
rs1469666954 2626 dbSNP
rs1436758511 2628 dbSNP
rs1313724869 2633 dbSNP
rs554444239 2642 dbSNP
rs1375796465 2645 dbSNP
rs1395262899 2650 dbSNP
rs747403274 2652 dbSNP
rs1337509019 2655 dbSNP
rs1026523160 2658 dbSNP
rs975044703 2660 dbSNP
rs972250553 2683 dbSNP
rs1178909535 2694 dbSNP
rs965058387 2695 dbSNP
rs1199145312 2696 dbSNP
rs1253245338 2698 dbSNP
rs963606874 2702 dbSNP
rs1178587686 2703 dbSNP
rs1016359703 2709 dbSNP
rs1455666833 2714 dbSNP
rs1013105543 2718 dbSNP
rs1372533036 2721 dbSNP
rs1465333943 2730 dbSNP
rs1170665941 2731 dbSNP
rs1398525140 2732 dbSNP
rs1385488789 2733 dbSNP
rs138475858 2738 dbSNP
rs894872868 2739 dbSNP
rs1410404974 2744 dbSNP
rs1330596926 2746 dbSNP
rs1193995930 2747 dbSNP
rs956396113 2765 dbSNP
rs1303657295 2773 dbSNP
rs1330188310 2779 dbSNP
rs1231518284 2789 dbSNP
rs1253389720 2792 dbSNP
rs1428987834 2795 dbSNP
rs1340509639 2806 dbSNP
rs1033467673 2809 dbSNP
rs1198529099 2819 dbSNP
rs1256742675 2822 dbSNP
rs1469861537 2824 dbSNP
rs1263838947 2831 dbSNP
rs1031877732 2839 dbSNP
rs7484994 2856 dbSNP
rs1431717062 2865 dbSNP
rs565656414 2875 dbSNP
rs1195615848 2880 dbSNP
rs1374513495 2883 dbSNP
rs1181519729 2884 dbSNP
rs374007839 2890 dbSNP
rs1003615392 2895 dbSNP
rs552319175 2896 dbSNP
rs1263353179 2902 dbSNP
rs780350346 2903 dbSNP
rs945246123 2908 dbSNP
rs1315714776 2910 dbSNP
rs893744955 2911 dbSNP
rs1250202916 2922 dbSNP
rs1389408600 2930 dbSNP
rs1384651300 2931 dbSNP
rs968859510 2936 dbSNP
rs1227540544 2937 dbSNP
rs1327345512 2939 dbSNP
rs1054007963 2941 dbSNP
rs1328698988 2943 dbSNP
rs943246927 2946 dbSNP
rs910619514 2953 dbSNP
rs1012831406 2955 dbSNP
rs7956793 2962 dbSNP
rs933409404 2966 dbSNP
rs1264880389 2968 dbSNP
rs569870932 2971 dbSNP
rs183804732 2982 dbSNP
rs963576057 2986 dbSNP
rs1478011009 2990 dbSNP
rs1192715850 2991 dbSNP
rs1421380108 2997 dbSNP
rs1016543739 3000 dbSNP
rs1476178664 3005 dbSNP
rs1165404623 3014 dbSNP
rs146958740 3019 dbSNP
rs958939392 3022 dbSNP
rs1455956584 3025 dbSNP
rs561052680 3027 dbSNP
rs746347253 3028 dbSNP
rs970477834 3031 dbSNP
rs1296800545 3033 dbSNP
rs1357771055 3043 dbSNP
rs1234365935 3055 dbSNP
rs931154811 3060 dbSNP
rs1365144940 3072 dbSNP
rs1241332474 3074 dbSNP
rs1463652449 3081 dbSNP
rs1261496664 3089 dbSNP
rs1488122903 3094 dbSNP
rs1215607003 3099 dbSNP
rs1020609038 3100 dbSNP
rs576856182 3104 dbSNP
rs1182330925 3105 dbSNP
rs1255451908 3108 dbSNP
rs1421511320 3109 dbSNP
rs1160746720 3110 dbSNP
rs1380516533 3117 dbSNP
rs893715556 3120 dbSNP
rs1156461642 3122 dbSNP
rs1053743996 3123 dbSNP
rs558397756 3124 dbSNP
rs888915805 3126 dbSNP
rs1377669522 3130 dbSNP
rs912263469 3132 dbSNP
rs988125357 3136 dbSNP
rs7968453 3137 dbSNP
rs1238198183 3142 dbSNP
rs1282769654 3149 dbSNP
rs1349761151 3158 dbSNP
rs7953721 3158 dbSNP
rs1185207254 3163 dbSNP
rs142731076 3178 dbSNP
rs1482270034 3182 dbSNP
rs1249456629 3185 dbSNP
rs191048548 3188 dbSNP
rs1022972773 3191 dbSNP
rs1438571678 3193 dbSNP
rs942068999 3197 dbSNP
rs960030887 3200 dbSNP
rs1288979940 3201 dbSNP
rs753736601 3201 dbSNP
rs562633197 3209 dbSNP
rs991713957 3215 dbSNP
rs959219109 3216 dbSNP
rs928791062 3222 dbSNP
rs1332669739 3223 dbSNP
rs1027332964 3230 dbSNP
rs542860298 3235 dbSNP
rs981624942 3239 dbSNP
rs899673529 3240 dbSNP
rs970446560 3246 dbSNP
rs117777833 3249 dbSNP
rs1277586612 3250 dbSNP
rs1329839236 3269 dbSNP
rs943807389 3272 dbSNP
rs1258651606 3276 dbSNP
rs1456911234 3286 dbSNP
rs890777168 3287 dbSNP
rs1388611133 3289 dbSNP
rs1052134668 3291 dbSNP
rs548367107 3294 dbSNP
rs185792206 3296 dbSNP
rs763050357 3302 dbSNP
rs957767675 3304 dbSNP
rs1430688157 3305 dbSNP
rs1171985311 3309 dbSNP
rs1385804797 3309 dbSNP
rs1165228655 3310 dbSNP
rs1032427139 3313 dbSNP
rs1464128730 3323 dbSNP
rs979433389 3329 dbSNP
rs112527304 3331 dbSNP
rs1350558010 3331 dbSNP
rs1362834375 3336 dbSNP
rs865928590 3337 dbSNP
rs1220287719 3338 dbSNP
rs991517163 3347 dbSNP
rs879836802 3351 dbSNP
rs1317292718 3354 dbSNP
rs1196194641 3358 dbSNP
rs1274440485 3362 dbSNP
rs1439222149 3368 dbSNP
rs1220315055 3369 dbSNP
rs138392057 3371 dbSNP
rs997329760 3373 dbSNP
rs1194932221 3377 dbSNP
rs1036198693 3379 dbSNP
rs1221108034 3379 dbSNP
rs1490651879 3380 dbSNP
rs1167746613 3398 dbSNP
rs1294670259 3400 dbSNP
rs1480001568 3402 dbSNP
rs1222392738 3405 dbSNP
rs982781345 3416 dbSNP
rs1321800703 3421 dbSNP
rs558887900 3421 dbSNP
rs897902304 3428 dbSNP
rs558543728 3429 dbSNP
rs1026867808 3439 dbSNP
rs1298641827 3440 dbSNP
rs34241939 3443 dbSNP
rs761386155 3445 dbSNP
rs189893472 3447 dbSNP
rs909179098 3449 dbSNP
rs1056213307 3454 dbSNP
rs150080739 3459 dbSNP
rs549877701 3460 dbSNP
rs558233261 3462 dbSNP
rs185484229 3468 dbSNP
rs1398721306 3470 dbSNP
rs928904371 3478 dbSNP
rs1158931780 3479 dbSNP
rs1470925254 3481 dbSNP
rs981592473 3488 dbSNP
rs1472489149 3492 dbSNP
rs140684111 3502 dbSNP
rs1426837548 3510 dbSNP
rs760301947 3513 dbSNP
rs1198059794 3528 dbSNP
rs376007359 3535 dbSNP
rs1043312357 3536 dbSNP
rs1158277996 3540 dbSNP
rs1214213750 3544 dbSNP
rs1446964381 3549 dbSNP
rs947665638 3553 dbSNP
rs913652386 3559 dbSNP
rs916069537 3562 dbSNP
rs1446635614 3566 dbSNP
rs752696790 3569 dbSNP
rs1207276703 3570 dbSNP
rs775876619 3572 dbSNP
rs938873660 3574 dbSNP
rs958035788 3583 dbSNP
rs1202590685 3586 dbSNP
rs151019207 3589 dbSNP
rs986221314 3590 dbSNP
rs951402501 3593 dbSNP
rs374364501 3601 dbSNP
rs148721593 3602 dbSNP
rs1440430739 3603 dbSNP
rs1268518858 3607 dbSNP
rs1428469202 3614 dbSNP
rs1344545955 3616 dbSNP
rs1178206390 3620 dbSNP
rs116984700 3621 dbSNP
rs1402297202 3622 dbSNP
rs1417629246 3624 dbSNP
rs1174164641 3626 dbSNP
rs1402660135 3627 dbSNP
rs1413776749 3630 dbSNP
rs1030235900 3645 dbSNP
rs1332154301 3646 dbSNP
rs1378416445 3646 dbSNP
rs1403401312 3649 dbSNP
rs973967297 3655 dbSNP
rs1175326269 3657 dbSNP
rs1235863411 3660 dbSNP
rs1470015839 3663 dbSNP
rs1344756961 3666 dbSNP
rs372449211 3679 dbSNP
rs997300296 3682 dbSNP
rs897622803 3683 dbSNP
rs1014716368 3685 dbSNP
rs564944849 3689 dbSNP
rs1377953637 3691 dbSNP
rs1243260305 3695 dbSNP
rs887877608 3697 dbSNP
rs1277148851 3699 dbSNP
rs963984833 3701 dbSNP
rs1170722018 3704 dbSNP
rs145556071 3705 dbSNP
rs937367402 3706 dbSNP
rs1262729751 3707 dbSNP
rs1204499522 3708 dbSNP
rs1325928398 3711 dbSNP
rs763435930 3713 dbSNP
rs1214117449 3715 dbSNP
rs1388083932 3718 dbSNP
rs1301580623 3719 dbSNP
rs1361176558 3719 dbSNP
rs1270737609 3720 dbSNP
rs531594280 3721 dbSNP
rs1436978526 3722 dbSNP
rs1380243007 3723 dbSNP
rs1280645778 3726 dbSNP
rs1008040260 3727 dbSNP
rs1218578556 3731 dbSNP
rs1452829212 3733 dbSNP
rs1267003698 3734 dbSNP
rs1360555127 3736 dbSNP
rs955393292 3738 dbSNP
rs1408933558 3742 dbSNP
rs1420812240 3744 dbSNP
rs1425665902 3746 dbSNP
rs1478071895 3749 dbSNP
rs1170201026 3750 dbSNP
rs1443355887 3751 dbSNP
rs1242842222 3755 dbSNP
rs1184603628 3756 dbSNP
rs1462812602 3757 dbSNP
rs1231458722 3758 dbSNP
rs1203868472 3760 dbSNP
rs1308203723 3761 dbSNP
rs1275233472 3762 dbSNP
rs1905251 3763 dbSNP
rs1164935375 3764 dbSNP
rs1192789500 3764 dbSNP
rs1259632696 3764 dbSNP
rs1264974618 3764 dbSNP
rs1265076977 3764 dbSNP
rs1276885745 3764 dbSNP
rs1287037705 3764 dbSNP
rs1293729775 3764 dbSNP
rs1300374797 3764 dbSNP
rs1323563779 3764 dbSNP
rs1341528478 3764 dbSNP
rs1345286017 3764 dbSNP
rs1354580907 3764 dbSNP
rs1367398716 3764 dbSNP
rs1385445065 3764 dbSNP
rs1389653117 3764 dbSNP
rs1399893769 3764 dbSNP
rs1402250209 3764 dbSNP
rs1422293126 3764 dbSNP
rs1425007929 3764 dbSNP
rs1488512182 3764 dbSNP
rs58309798 3764 dbSNP
rs76203036 3764 dbSNP
rs1182380608 3765 dbSNP
rs1215677212 3765 dbSNP
rs1254820555 3765 dbSNP
rs1258882481 3765 dbSNP
rs1442266888 3765 dbSNP
rs1484162745 3765 dbSNP
rs75841170 3765 dbSNP
rs1046054350 3766 dbSNP
rs779487801 3771 dbSNP
rs142005285 3772 dbSNP
rs1314036955 3784 dbSNP
rs1380574280 3785 dbSNP
rs1419479814 3787 dbSNP
rs1157446222 3793 dbSNP
rs562670465 3796 dbSNP
rs946283504 3798 dbSNP
rs1453179651 3800 dbSNP
rs1466939711 3801 dbSNP
rs1302804804 3804 dbSNP
rs1826592 3811 dbSNP
rs1403937771 3813 dbSNP
rs913369796 3817 dbSNP
rs774019661 3819 dbSNP
rs1380887187 3822 dbSNP
rs990330203 3827 dbSNP
rs1238265934 3828 dbSNP
rs1004265709 3834 dbSNP
rs1296136214 3842 dbSNP
rs1313770820 3846 dbSNP
rs1210669585 3847 dbSNP
rs936412693 3848 dbSNP
rs925050341 3849 dbSNP
rs542696856 3856 dbSNP
rs570844654 3857 dbSNP
rs1200058757 3863 dbSNP
rs1423222712 3870 dbSNP
rs1385217192 3871 dbSNP
rs771277905 3874 dbSNP
rs1438629092 3876 dbSNP
rs1164598136 3877 dbSNP
rs903500703 3882 dbSNP
rs552353174 3900 dbSNP
rs1434138900 3901 dbSNP
rs985802981 3906 dbSNP
rs762685259 3907 dbSNP
rs772533971 3910 dbSNP
rs1175947660 3911 dbSNP
rs7302414 3911 dbSNP
rs1029955645 3915 dbSNP
rs560436207 3921 dbSNP
rs1011884304 3925 dbSNP
rs554825188 3927 dbSNP
rs1219631476 3935 dbSNP
rs975936069 3937 dbSNP
rs777691419 3943 dbSNP
rs1176783522 3944 dbSNP
rs1481084986 3945 dbSNP
rs1234631517 3947 dbSNP
rs1321405480 3951 dbSNP
rs1220379054 3952 dbSNP
rs894708185 3953 dbSNP
rs1014686899 3965 dbSNP
rs1006490057 3967 dbSNP
rs1456953516 3972 dbSNP
rs1201942138 3973 dbSNP
rs1248143447 3974 dbSNP
rs1488992396 3976 dbSNP
rs1191047532 3977 dbSNP
rs756442721 3982 dbSNP
rs1427798668 3984 dbSNP
rs769415405 3989 dbSNP
rs887854391 3990 dbSNP
rs938815903 3990 dbSNP
rs1034879850 3999 dbSNP
rs560710418 4000 dbSNP
rs540575470 4001 dbSNP
rs1222780451 4002 dbSNP
rs1373640881 4003 dbSNP
rs1343413003 4005 dbSNP
rs1289659507 4006 dbSNP
rs1278787761 4007 dbSNP
rs1338152390 4015 dbSNP
rs1212331124 4021 dbSNP
rs1291573238 4032 dbSNP
rs1402606132 4033 dbSNP
rs1220383372 4034 dbSNP
rs907164742 4037 dbSNP
rs1045770014 4038 dbSNP
rs1195005904 4041 dbSNP
rs542491259 4043 dbSNP
rs1459911671 4044 dbSNP
rs892074244 4044 dbSNP
rs891122882 4051 dbSNP
rs1054612665 4053 dbSNP
rs1474466677 4057 dbSNP
rs1183734284 4069 dbSNP
rs1414648423 4070 dbSNP
rs1404913018 4071 dbSNP
rs1161933343 4073 dbSNP
rs1363427819 4073 dbSNP
rs936197345 4078 dbSNP
rs181999312 4079 dbSNP
rs986242784 4082 dbSNP
rs1358929315 4084 dbSNP
rs1325851485 4088 dbSNP
rs530410369 4094 dbSNP
rs911102273 4095 dbSNP
rs964057364 4095 dbSNP
rs1244724809 4107 dbSNP
rs1289211593 4108 dbSNP
rs1197322516 4112 dbSNP
rs780051864 4113 dbSNP
rs758277669 4119 dbSNP
rs955233786 4124 dbSNP
rs1284169725 4125 dbSNP
rs961917574 4127 dbSNP
rs77097712 4128 dbSNP
rs763769848 4130 dbSNP
rs1285446049 4132 dbSNP
rs752315682 4133 dbSNP
rs1181953319 4134 dbSNP
rs750114477 4144 dbSNP
rs1489423672 4145 dbSNP
rs1258690920 4150 dbSNP
rs1022021543 4153 dbSNP
rs1382440554 4158 dbSNP
rs1441309308 4158 dbSNP
rs1317111099 4159 dbSNP
rs1289906087 4162 dbSNP
rs1221142751 4163 dbSNP
rs1011830398 4164 dbSNP
rs952010511 4171 dbSNP
rs894820712 4172 dbSNP
rs1359215994 4179 dbSNP
rs1283371817 4184 dbSNP
rs114602467 4185 dbSNP
rs1360518733 4187 dbSNP
rs1001991718 4189 dbSNP
rs556306383 4190 dbSNP
rs536314612 4206 dbSNP
rs138048921 4212 dbSNP
rs1174620368 4213 dbSNP
rs1202647932 4213 dbSNP
rs1024289234 4230 dbSNP
rs1047706321 4232 dbSNP
rs1469492530 4233 dbSNP
rs567350106 4237 dbSNP
rs1010267596 4240 dbSNP
rs1201923495 4243 dbSNP
rs1240245428 4246 dbSNP
rs930171356 4251 dbSNP
rs892041419 4256 dbSNP
rs773794139 4258 dbSNP
rs1038466482 4267 dbSNP
rs1055151330 4268 dbSNP
rs1468454400 4275 dbSNP
rs771483976 4279 dbSNP
rs1000368933 4280 dbSNP
rs1425872274 4283 dbSNP
rs1468824187 4284 dbSNP
rs889916142 4285 dbSNP
rs1334054741 4287 dbSNP
rs1401856338 4293 dbSNP
rs1447016230 4295 dbSNP
rs765249125 4298 dbSNP
rs1334324650 4303 dbSNP
rs1235936551 4305 dbSNP
rs931698895 4305 dbSNP
rs923047920 4306 dbSNP
rs1040002963 4307 dbSNP
rs1486107134 4311 dbSNP
rs933931380 4323 dbSNP
rs544206117 4325 dbSNP
rs1195422522 4330 dbSNP
rs1269801868 4333 dbSNP
rs375458896 4335 dbSNP
rs1195654401 4337 dbSNP
rs1322437866 4342 dbSNP
rs1476625801 4346 dbSNP
rs761603341 4348 dbSNP
rs978306548 4351 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000550657.1 | 3UTR | UGAGGAGCUGGGACUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
256 hsa-miR-4433a-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT088097 SEPT2 septin 2 2 2
MIRT143134 MGRN1 mahogunin ring finger 1 2 2
MIRT153912 NCOA3 nuclear receptor coactivator 3 2 2
MIRT154894 GNAS GNAS complex locus 2 4
MIRT200996 ZNF805 zinc finger protein 805 2 2
MIRT215729 C5ORF51 chromosome 5 open reading frame 51 2 10
MIRT235593 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT263250 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT317951 CDC5L cell division cycle 5 like 2 4
MIRT325572 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT354739 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT444552 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 4
MIRT446978 SUSD5 sushi domain containing 5 2 2
MIRT451036 ZNF610 zinc finger protein 610 2 2
MIRT451596 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT452025 NLRP6 NLR family pyrin domain containing 6 2 2
MIRT452594 CA6 carbonic anhydrase 6 2 2
MIRT452768 TCEA3 transcription elongation factor A3 2 4
MIRT452959 ZNF844 zinc finger protein 844 2 2
MIRT453191 ACSF2 acyl-CoA synthetase family member 2 2 2
MIRT453382 RHD Rh blood group D antigen 2 2
MIRT453685 CEBPD CCAAT/enhancer binding protein delta 2 2
MIRT455272 DDX39B DExD-box helicase 39B 2 8
MIRT455346 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT456494 SERAC1 serine active site containing 1 2 2
MIRT456585 NID1 nidogen 1 2 2
MIRT456888 DDA1 DET1 and DDB1 associated 1 2 2
MIRT457123 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT457852 ZNF324B zinc finger protein 324B 2 2
MIRT457987 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT459278 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT459625 SLC25A33 solute carrier family 25 member 33 2 2
MIRT459715 SGK494 uncharacterized serine/threonine-protein kinase SgK494 2 2
MIRT460057 RPL22L1 ribosomal protein L22 like 1 2 2
MIRT460182 UNK unkempt family zinc finger 2 6
MIRT460288 PDE11A phosphodiesterase 11A 2 2
MIRT460841 EGF epidermal growth factor 2 4
MIRT460860 TBC1D19 TBC1 domain family member 19 2 2
MIRT461519 EMC7 ER membrane protein complex subunit 7 2 2
MIRT461729 SLC27A1 solute carrier family 27 member 1 2 4
MIRT461821 SNAP23 synaptosome associated protein 23 2 2
MIRT462066 CCDC77 coiled-coil domain containing 77 2 4
MIRT462084 MSANTD2 Myb/SANT DNA binding domain containing 2 2 2
MIRT462508 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 10
MIRT464239 VCP valosin containing protein 2 2
MIRT465316 TRAF5 TNF receptor associated factor 5 2 2
MIRT466549 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467128 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 8
MIRT468091 SHCBP1 SHC binding and spindle associated 1 2 2
MIRT469630 RAD21 RAD21 cohesin complex component 2 6
MIRT471097 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472704 MYBL1 MYB proto-oncogene like 1 2 2
MIRT472830 MTMR10 myotubularin related protein 10 2 2
MIRT472872 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT472895 MTDH metadherin 2 2
MIRT473728 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT473859 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT474047 LONRF1 LON peptidase N-terminal domain and ring finger 1 2 2
MIRT474297 LAMC1 laminin subunit gamma 1 2 2
MIRT474658 KLF13 Kruppel like factor 13 2 2
MIRT475234 IKZF3 IKAROS family zinc finger 3 2 2
MIRT475500 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT475742 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT475793 HDGF heparin binding growth factor 2 2
MIRT477254 ERGIC2 ERGIC and golgi 2 2 2
MIRT478228 DDX52 DExD-box helicase 52 2 2
MIRT478393 DCTN5 dynactin subunit 5 2 2
MIRT478754 CS citrate synthase 2 2
MIRT478827 CRKL CRK like proto-oncogene, adaptor protein 2 4
MIRT480234 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT480597 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT484121 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT484689 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT486331 C11orf54 chromosome 11 open reading frame 54 2 4
MIRT488599 FAM3C family with sequence similarity 3 member C 2 8
MIRT488833 MRRF mitochondrial ribosome recycling factor 2 2
MIRT492523 RAB15 RAB15, member RAS oncogene family 2 4
MIRT493632 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT500026 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501075 SMAD7 SMAD family member 7 2 8
MIRT503094 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503336 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT505465 STMN1 stathmin 1 2 4
MIRT505726 SERTAD3 SERTA domain containing 3 2 4
MIRT509333 MS4A4A membrane spanning 4-domains A4A 2 2
MIRT509978 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 4
MIRT513068 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT513446 EMP1 epithelial membrane protein 1 2 6
MIRT513736 PSD3 pleckstrin and Sec7 domain containing 3 2 4
MIRT513996 CENPQ centromere protein Q 2 4
MIRT516538 MIXL1 Mix paired-like homeobox 2 2
MIRT517606 SAV1 salvador family WW domain containing protein 1 2 2
MIRT518064 CEP89 centrosomal protein 89 2 2
MIRT518119 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT518325 WDR92 WD repeat domain 92 2 2
MIRT519048 ABCB11 ATP binding cassette subfamily B member 11 2 2
MIRT520972 SPPL2A signal peptide peptidase like 2A 2 4
MIRT521359 RPL35A ribosomal protein L35a 2 2
MIRT523359 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT523801 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT524622 C7orf73 short transmembrane mitochondrial protein 1 2 2
MIRT525550 PHB2 prohibitin 2 2 4
MIRT529709 ZBTB49 zinc finger and BTB domain containing 49 2 2
MIRT531605 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT532387 UMPS uridine monophosphate synthetase 2 2
MIRT534468 SCD stearoyl-CoA desaturase 2 4
MIRT537546 ETNK1 ethanolamine kinase 1 2 2
MIRT541619 C11orf31 selenoprotein H 2 2
MIRT548380 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 4
MIRT549523 HDDC2 HD domain containing 2 2 2
MIRT549774 SOD2 superoxide dismutase 2 2 2
MIRT550578 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551498 CENPN centromere protein N 2 4
MIRT552301 ITGA3 integrin subunit alpha 3 2 2
MIRT555400 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT556399 LUC7L LUC7 like 2 2
MIRT557047 HOXB3 homeobox B3 2 2
MIRT558072 ERO1L endoplasmic reticulum oxidoreductase 1 alpha 1 2
MIRT559659 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT561239 ZNF354B zinc finger protein 354B 2 2
MIRT566899 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT568786 FAM120B family with sequence similarity 120B 2 2
MIRT574014 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT574885 Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 2 2
MIRT575243 Serping1 serine (or cysteine) peptidase inhibitor, clade G, member 1 2 2
MIRT576194 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576309 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576484 Lhx4 LIM homeobox protein 4 2 3
MIRT576646 Mill2 MHC I like leukocyte 2 1 1
MIRT576708 Kras Kirsten rat sarcoma viral oncogene homolog 2 2
MIRT576855 Socs6 suppressor of cytokine signaling 6 2 2
MIRT576950 Aldoa aldolase A, fructose-bisphosphate 2 2
MIRT617133 ZNF556 zinc finger protein 556 2 4
MIRT617928 ZNF783 zinc finger family member 783 2 2
MIRT618981 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT621100 SIX3 SIX homeobox 3 2 2
MIRT624537 BROX BRO1 domain and CAAX motif containing 2 2
MIRT625663 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT627059 DCTN6 dynactin subunit 6 2 2
MIRT628319 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT630859 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT632295 TMEM65 transmembrane protein 65 2 2
MIRT634115 ZNF207 zinc finger protein 207 2 2
MIRT634736 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT635655 NDST3 N-deacetylase and N-sulfotransferase 3 2 2
MIRT635772 PDCL3 phosducin like 3 2 2
MIRT635911 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT636365 OGFRL1 opioid growth factor receptor like 1 2 4
MIRT637251 GLRX2 glutaredoxin 2 2 2
MIRT638705 FZD4 frizzled class receptor 4 2 2
MIRT639640 PREX2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 2 2
MIRT639676 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT642267 SMIM17 small integral membrane protein 17 2 2
MIRT642372 ZNF581 zinc finger protein 581 2 2
MIRT643545 SLC25A17 solute carrier family 25 member 17 2 2
MIRT647994 PDE12 phosphodiesterase 12 2 2
MIRT649094 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT650993 ZNF770 zinc finger protein 770 2 2
MIRT651956 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT652977 SUN2 Sad1 and UNC84 domain containing 2 2 2
MIRT654389 RBM12B RNA binding motif protein 12B 2 2
MIRT655637 OLFML2A olfactomedin like 2A 2 2
MIRT655729 NRXN3 neurexin 3 2 2
MIRT658171 FCHSD1 FCH and double SH3 domains 1 2 2
MIRT660937 ACOX1 acyl-CoA oxidase 1 2 2
MIRT662112 CERKL ceramide kinase like 2 2
MIRT662302 MPV17L MPV17 mitochondrial inner membrane protein like 2 2
MIRT662993 TMEM59 transmembrane protein 59 2 2
MIRT663071 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT663704 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663864 MUC20 mucin 20, cell surface associated 2 2
MIRT665185 HAUS5 HAUS augmin like complex subunit 5 2 4
MIRT665402 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT665688 TNPO3 transportin 3 2 2
MIRT665795 TMEM170A transmembrane protein 170A 2 2
MIRT665847 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT666999 PDPN podoplanin 2 2
MIRT667598 LIPC lipase C, hepatic type 2 2
MIRT668576 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT670960 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT671187 ZNF891 zinc finger protein 891 2 2
MIRT671739 ZNF451 zinc finger protein 451 2 2
MIRT672745 ZNF585B zinc finger protein 585B 2 4
MIRT673446 ZNF583 zinc finger protein 583 2 2
MIRT679843 GPR75 G protein-coupled receptor 75 2 2
MIRT680556 ZNF584 zinc finger protein 584 2 2
MIRT680661 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT681285 RFC2 replication factor C subunit 2 2 2
MIRT683264 ZNF329 zinc finger protein 329 2 2
MIRT684519 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT685065 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685157 DTWD2 DTW domain containing 2 2 2
MIRT685168 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT685470 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT686001 NEK4 NIMA related kinase 4 2 2
MIRT687027 RNF24 ring finger protein 24 2 2
MIRT687543 MOB1B MOB kinase activator 1B 2 2
MIRT687592 MANEAL mannosidase endo-alpha like 2 2
MIRT687753 KIAA1328 KIAA1328 2 2
MIRT688050 GLUL glutamate-ammonia ligase 2 2
MIRT688374 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 2 2
MIRT688802 CBFA2T3 CBFA2/RUNX1 translocation partner 3 2 2
MIRT688957 ATXN3 ataxin 3 2 2
MIRT689281 C5AR2 complement component 5a receptor 2 2 2
MIRT689988 NNMT nicotinamide N-methyltransferase 2 2
MIRT689997 MMP17 matrix metallopeptidase 17 2 2
MIRT690014 LUZP2 leucine zipper protein 2 2 2
MIRT690161 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690379 ZSWIM7 zinc finger SWIM-type containing 7 2 2
MIRT690563 MICA MHC class I polypeptide-related sequence A 2 2
MIRT691891 EVC EvC ciliary complex subunit 1 2 2
MIRT693107 SCNM1 sodium channel modifier 1 2 2
MIRT693832 ZFP64 ZFP64 zinc finger protein 2 2
MIRT694105 ZNF446 zinc finger protein 446 2 2
MIRT694179 ZNF486 zinc finger protein 486 2 2
MIRT694475 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT694998 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT695031 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT695163 TCTN2 tectonic family member 2 2 2
MIRT695525 SLC25A34 solute carrier family 25 member 34 2 2
MIRT696067 ZNF264 zinc finger protein 264 2 2
MIRT696616 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT696661 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696705 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT697173 INMT indolethylamine N-methyltransferase 2 2
MIRT697303 ZNF652 zinc finger protein 652 2 2
MIRT697491 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT698657 TERF2 telomeric repeat binding factor 2 2 2
MIRT699042 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699185 SLX4IP SLX4 interacting protein 2 2
MIRT699598 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT700150 RNF115 ring finger protein 115 2 2
MIRT700720 PNO1 partner of NOB1 homolog 2 2
MIRT700870 PER2 period circadian clock 2 2 2
MIRT700912 PDXK pyridoxal kinase 2 2
MIRT701095 PAPOLG poly(A) polymerase gamma 2 2
MIRT701194 OTUD3 OTU deubiquitinase 3 2 2
MIRT702203 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT702272 LHX4 LIM homeobox 4 2 3
MIRT703125 GPRC5A G protein-coupled receptor class C group 5 member A 2 2
MIRT703252 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT703262 GNL3L G protein nucleolar 3 like 2 2
MIRT703440 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704321 DCUN1D5 defective in cullin neddylation 1 domain containing 5 2 2
MIRT704393 CTSS cathepsin S 2 2
MIRT704483 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT704880 CCSER2 coiled-coil serine rich protein 2 2 2
MIRT704926 CCDC36 coiled-coil domain containing 36 2 2
MIRT705175 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT706561 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT707048 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT711497 PGD phosphogluconate dehydrogenase 2 2
MIRT716644 EPGN epithelial mitogen 2 2
MIRT720083 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT722288 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT725468 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4433a Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4433a Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-4433a Vincristine 5978 approved resistant cell line (W1)
hsa-mir-4433a Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4433a-3p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Pancreatic Cancer cell line (BxPC-3)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CIS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (mitochondrial RNA)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-4433a-3p Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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