pre-miRNA Information
pre-miRNA hsa-mir-6501   
Genomic Coordinates chr21: 33550662 - 33550728
Description Homo sapiens miR-6501 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6501-5p
Sequence 3| AGUUGCCAGGGCUGCCUUUGGU |24
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
1055619 20 ClinVar
COSM5974214 5 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs756127353 5 dbSNP
rs764400023 6 dbSNP
rs753967693 8 dbSNP
rs1283296362 14 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TRUB2   
Synonyms CLONE24922
Description TruB pseudouridine synthase family member 2
Transcript NM_015679   
Expression
Putative miRNA Targets on TRUB2
3'UTR of TRUB2
(miRNA target sites are highlighted)
>TRUB2|NM_015679|3'UTR
   1 ATGCCCAGGCAGCTCCTGGGGCAGTGGATGGATAAATAGAAGAACTGCTATGAGCTGGACCTGATAGCTGTGCAGAAAGT
  81 GAGAGCAGGGGCACCTTTTCTACGTAAGACACAAAACTCAAGCTGTAACAGAAAGGTCAATGGACTTGACCCAACTGAGA
 161 AGGAAAAACTTCTGTATGGAGGAAAAGACAGTAAACATGACAGACTGATAGAAAGTATTGGCAGACCAGGCGTGGTGGCG
 241 GGCACTTGTAATCCCAGCTACTCCCAAGGCTGAGGCAGGAGAATTGCTTGAGCCCAGGAGTTTAAGGTTGTAGTGCGCTA
 321 GACGGCGCCTGTGAATAGCCACTGCACTCTAGTCTGGGGAACATATGAGACCCCTGCCATCTCAAAAAAAAAAAAATTCT
 401 CAATAAACTATGTGCCCACGAAAATTAAAAATTAAAAAAAATTGTAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uggUUUCCGUCGGGACCGU-UGa 5'
             | ||  ||: :||||| || 
Target 5' ctgATAGAAAGTATTGGCAGACc 3'
205 - 227 123.00 -10.90
2
miRNA  3' ugguuuccguCGGGACCGUUGa 5'
                    |||| ||||:| 
Target 5' --------atGCCCAGGCAGCt 3'
1 - 14 112.00 -16.20
3
miRNA  3' ugguUUCCGUCGGGACCGUUGa 5'
              :|| ::| |||| :|:| 
Target 5' ctatGAGCTGGACCTGATAGCt 3'
48 - 69 98.00 -11.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN24577478 6 COSMIC
COSN30455489 19 COSMIC
COSN30504098 21 COSMIC
COSN30154807 31 COSMIC
COSN32065208 36 COSMIC
COSN30146436 39 COSMIC
COSN31499447 103 COSMIC
COSN16110465 140 COSMIC
COSN28213745 530 COSMIC
COSN23103771 1045 COSMIC
COSN21298863 1371 COSMIC
COSN22754294 1413 COSMIC
COSN25580942 1455 COSMIC
COSN30443137 1687 COSMIC
COSN9700767 1840 COSMIC
COSN25847326 2001 COSMIC
COSN8295737 2149 COSMIC
COSN25732707 2210 COSMIC
COSN32214935 2481 COSMIC
COSN25174928 2553 COSMIC
COSN23985053 3089 COSMIC
COSN23810448 3106 COSMIC
COSN19383093 3348 COSMIC
COSN16757985 3637 COSMIC
COSN21065875 3787 COSMIC
COSN27183970 3845 COSMIC
COSN21959967 4257 COSMIC
COSN21960720 4259 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs771617734 5 dbSNP
rs1234674701 7 dbSNP
rs1374854596 10 dbSNP
rs749721509 13 dbSNP
rs1331041786 15 dbSNP
rs1456029323 16 dbSNP
rs776091421 21 dbSNP
rs770256046 23 dbSNP
rs1363495753 24 dbSNP
rs754945075 27 dbSNP
rs1452986710 28 dbSNP
rs1200674577 33 dbSNP
rs1394864765 39 dbSNP
rs148428332 41 dbSNP
rs748685973 45 dbSNP
rs781730336 47 dbSNP
rs202224141 48 dbSNP
rs757537499 50 dbSNP
rs1012165529 54 dbSNP
rs1197008361 55 dbSNP
rs2231643 66 dbSNP
rs1436533971 71 dbSNP
rs1299061420 86 dbSNP
rs1253958825 91 dbSNP
rs1455858519 94 dbSNP
rs1053799264 99 dbSNP
rs1192223896 100 dbSNP
rs527452677 103 dbSNP
rs78278964 104 dbSNP
rs2231644 106 dbSNP
rs2231645 107 dbSNP
rs201871299 108 dbSNP
rs386738712 108 dbSNP
rs1002666475 112 dbSNP
rs905674589 124 dbSNP
rs1365430760 129 dbSNP
rs186463651 137 dbSNP
rs1267845496 138 dbSNP
rs1338195611 140 dbSNP
rs777983432 142 dbSNP
rs746346897 145 dbSNP
rs1195662888 150 dbSNP
rs548795956 154 dbSNP
rs772214183 166 dbSNP
rs372307838 169 dbSNP
rs1478530476 176 dbSNP
rs963547750 181 dbSNP
rs1263408131 190 dbSNP
rs375995122 191 dbSNP
rs1429298307 196 dbSNP
rs368583861 197 dbSNP
rs983758695 203 dbSNP
rs954671221 206 dbSNP
rs1030331371 231 dbSNP
rs546584893 232 dbSNP
rs1487177728 239 dbSNP
rs532990790 240 dbSNP
rs564746485 241 dbSNP
rs1210327396 249 dbSNP
rs1383498149 277 dbSNP
rs1355610007 278 dbSNP
rs1325556985 287 dbSNP
rs3180362 296 dbSNP
rs1021720741 297 dbSNP
rs1011721384 299 dbSNP
rs1320098207 303 dbSNP
rs1040839278 310 dbSNP
rs1272894024 312 dbSNP
rs1486407824 314 dbSNP
rs1207055306 315 dbSNP
rs748208579 316 dbSNP
rs144516462 317 dbSNP
rs1188705870 319 dbSNP
rs1325998447 320 dbSNP
rs1003518830 321 dbSNP
rs778906795 323 dbSNP
rs984941583 324 dbSNP
rs1046040416 326 dbSNP
rs947733594 327 dbSNP
rs531000119 328 dbSNP
rs1037867060 342 dbSNP
rs941816178 351 dbSNP
rs907681293 354 dbSNP
rs1353047797 362 dbSNP
rs1476658503 363 dbSNP
rs1379131196 372 dbSNP
rs1199240456 378 dbSNP
rs1450848870 380 dbSNP
rs533165623 382 dbSNP
rs1200466073 383 dbSNP
rs1459136454 384 dbSNP
rs1259374031 389 dbSNP
rs111806731 397 dbSNP
rs774439267 397 dbSNP
rs961026848 397 dbSNP
rs1484733985 399 dbSNP
rs1187395899 407 dbSNP
rs1251136169 412 dbSNP
rs1420855935 416 dbSNP
rs1035385778 417 dbSNP
rs983341879 419 dbSNP
rs562266798 420 dbSNP
rs1198219181 421 dbSNP
rs564195967 434 dbSNP
rs1298315789 442 dbSNP
rs1373032006 442 dbSNP
rs1433559163 442 dbSNP
rs754879569 449 dbSNP
rs969847897 455 dbSNP
rs180683129 462 dbSNP
rs541151022 467 dbSNP
rs1235209059 469 dbSNP
rs149273968 472 dbSNP
rs1021689920 475 dbSNP
rs1346059801 483 dbSNP
rs13286637 494 dbSNP
rs746705010 497 dbSNP
rs1252005439 505 dbSNP
rs1481552969 508 dbSNP
rs1330891635 510 dbSNP
rs956172624 511 dbSNP
rs373502105 515 dbSNP
rs1454553652 520 dbSNP
rs138247064 521 dbSNP
rs370817598 523 dbSNP
rs1003079768 524 dbSNP
rs10987960 527 dbSNP
rs755849252 532 dbSNP
rs147516317 535 dbSNP
rs1181682595 536 dbSNP
rs1400296265 546 dbSNP
rs1330153887 550 dbSNP
rs868682055 551 dbSNP
rs1218897107 555 dbSNP
rs901826536 560 dbSNP
rs538181972 570 dbSNP
rs1202277733 576 dbSNP
rs1008031858 577 dbSNP
rs1477539577 580 dbSNP
rs1037394821 583 dbSNP
rs1375779951 585 dbSNP
rs1215313933 586 dbSNP
rs1180431104 593 dbSNP
rs1487924359 599 dbSNP
rs889208632 600 dbSNP
rs1049185601 612 dbSNP
rs750194054 619 dbSNP
rs1440286643 622 dbSNP
rs930805195 623 dbSNP
rs919466323 628 dbSNP
rs1036556000 630 dbSNP
rs575458729 638 dbSNP
rs1328296320 639 dbSNP
rs941769766 652 dbSNP
rs1435956677 662 dbSNP
rs1289673611 664 dbSNP
rs1364434274 674 dbSNP
rs555491401 677 dbSNP
rs1238847333 681 dbSNP
rs886221725 682 dbSNP
rs189538586 683 dbSNP
rs1280922272 684 dbSNP
rs7874504 685 dbSNP
rs1243475037 688 dbSNP
rs1484716188 689 dbSNP
rs1344744493 690 dbSNP
rs1278687244 691 dbSNP
rs1192263856 698 dbSNP
rs1242923108 700 dbSNP
rs1257640414 704 dbSNP
rs546745754 707 dbSNP
rs539436905 708 dbSNP
rs1416061656 711 dbSNP
rs1405138418 712 dbSNP
rs943296859 719 dbSNP
rs1439307666 722 dbSNP
rs1347164313 724 dbSNP
rs1428940057 732 dbSNP
rs1297618438 740 dbSNP
rs1356188597 747 dbSNP
rs1238588399 748 dbSNP
rs1341754522 751 dbSNP
rs78361416 752 dbSNP
rs914559170 754 dbSNP
rs1291356418 760 dbSNP
rs915674098 762 dbSNP
rs990206856 766 dbSNP
rs1286132323 767 dbSNP
rs1413626143 768 dbSNP
rs956311634 770 dbSNP
rs146328191 771 dbSNP
rs1185251485 778 dbSNP
rs556822071 780 dbSNP
rs1420104198 787 dbSNP
rs1472788547 795 dbSNP
rs971558598 800 dbSNP
rs184605501 801 dbSNP
rs1158275461 810 dbSNP
rs1376363227 813 dbSNP
rs1013102714 817 dbSNP
rs1311190741 818 dbSNP
rs898788492 819 dbSNP
rs539014545 826 dbSNP
rs562263901 830 dbSNP
rs1239351451 833 dbSNP
rs886148884 834 dbSNP
rs1370926125 837 dbSNP
rs1238891296 845 dbSNP
rs1188465808 846 dbSNP
rs548731636 849 dbSNP
rs933110383 852 dbSNP
rs1349676107 853 dbSNP
rs1208074003 858 dbSNP
rs763576654 859 dbSNP
rs760102924 860 dbSNP
rs1438213393 863 dbSNP
rs1219195922 867 dbSNP
rs1354871713 868 dbSNP
rs777218034 869 dbSNP
rs914529151 870 dbSNP
rs897985824 871 dbSNP
rs990525225 877 dbSNP
rs192871943 879 dbSNP
rs545940746 880 dbSNP
rs924667730 887 dbSNP
rs1303943327 888 dbSNP
rs35431309 891 dbSNP
rs1372685414 895 dbSNP
rs576818921 898 dbSNP
rs1231667590 901 dbSNP
rs563659689 904 dbSNP
rs1273684407 905 dbSNP
rs1339479954 907 dbSNP
rs543456226 907 dbSNP
rs1275702592 925 dbSNP
rs981506427 929 dbSNP
rs772314739 930 dbSNP
rs1023085695 937 dbSNP
rs576934568 939 dbSNP
rs189785226 941 dbSNP
rs1359681144 944 dbSNP
rs989883898 947 dbSNP
rs1156760997 953 dbSNP
rs962897403 955 dbSNP
rs1416021614 956 dbSNP
rs1163859371 959 dbSNP
rs748360966 964 dbSNP
rs1472525171 966 dbSNP
rs1421366643 967 dbSNP
rs7032645 970 dbSNP
rs140963223 974 dbSNP
rs774486603 975 dbSNP
rs977283176 977 dbSNP
rs1384663232 978 dbSNP
rs1322464064 983 dbSNP
rs966321372 983 dbSNP
rs1006277321 988 dbSNP
rs1267937639 989 dbSNP
rs78387192 998 dbSNP
rs1316549502 1005 dbSNP
rs1018855074 1008 dbSNP
rs1218586803 1014 dbSNP
rs1274135616 1017 dbSNP
rs950425041 1018 dbSNP
rs542021957 1019 dbSNP
rs1007928639 1024 dbSNP
rs1266926591 1024 dbSNP
rs1026427738 1027 dbSNP
rs184300698 1028 dbSNP
rs997248990 1029 dbSNP
rs901634313 1031 dbSNP
rs1165583825 1032 dbSNP
rs1038878525 1035 dbSNP
rs1263000279 1039 dbSNP
rs994854089 1040 dbSNP
rs1456183729 1042 dbSNP
rs1007407533 1044 dbSNP
rs1385185365 1046 dbSNP
rs553093358 1055 dbSNP
rs1015009162 1057 dbSNP
rs1453887110 1058 dbSNP
rs1003724216 1059 dbSNP
rs1291250148 1061 dbSNP
rs539497317 1062 dbSNP
rs906730699 1067 dbSNP
rs1265270690 1071 dbSNP
rs768781373 1072 dbSNP
rs1207146055 1073 dbSNP
rs570453483 1079 dbSNP
rs371178438 1080 dbSNP
rs779904023 1084 dbSNP
rs934629817 1085 dbSNP
rs28524722 1086 dbSNP
rs533907633 1093 dbSNP
rs935695997 1096 dbSNP
rs568239047 1097 dbSNP
rs1350354211 1099 dbSNP
rs950126811 1100 dbSNP
rs1404943180 1101 dbSNP
rs1460931841 1121 dbSNP
rs1394837010 1123 dbSNP
rs916002403 1124 dbSNP
rs1336742435 1130 dbSNP
rs1242505569 1131 dbSNP
rs991577673 1135 dbSNP
rs1353317129 1138 dbSNP
rs962928415 1144 dbSNP
rs910095652 1145 dbSNP
rs1173085666 1147 dbSNP
rs1257864487 1148 dbSNP
rs1482206011 1151 dbSNP
rs944553549 1154 dbSNP
rs983039920 1155 dbSNP
rs1420641446 1156 dbSNP
rs536666360 1163 dbSNP
rs1454480022 1173 dbSNP
rs986052600 1173 dbSNP
rs1174917555 1181 dbSNP
rs35313285 1182 dbSNP
rs1464922989 1189 dbSNP
rs1027589434 1190 dbSNP
rs973380671 1197 dbSNP
rs780901241 1201 dbSNP
rs1376378955 1216 dbSNP
rs1235341894 1217 dbSNP
rs997218432 1218 dbSNP
rs1310532870 1222 dbSNP
rs1251813032 1229 dbSNP
rs759644684 1229 dbSNP
rs965752507 1231 dbSNP
rs1459067807 1233 dbSNP
rs548501615 1234 dbSNP
rs1017370398 1235 dbSNP
rs1195113340 1237 dbSNP
rs1466741682 1239 dbSNP
rs755965363 1242 dbSNP
rs1007378199 1244 dbSNP
rs1374122638 1253 dbSNP
rs1467668255 1256 dbSNP
rs1168935484 1267 dbSNP
rs906686095 1268 dbSNP
rs892984227 1276 dbSNP
rs1295492616 1278 dbSNP
rs143683627 1279 dbSNP
rs1198856579 1289 dbSNP
rs1316863222 1291 dbSNP
rs1293032581 1292 dbSNP
rs1220668260 1294 dbSNP
rs751225414 1295 dbSNP
rs1216753722 1298 dbSNP
rs1012475458 1303 dbSNP
rs1438706171 1305 dbSNP
rs894064536 1305 dbSNP
rs1054089006 1306 dbSNP
rs1487984431 1307 dbSNP
rs1333506637 1318 dbSNP
rs1264746812 1319 dbSNP
rs547246841 1319 dbSNP
rs1169182195 1320 dbSNP
rs935645098 1321 dbSNP
rs565975165 1325 dbSNP
rs1167401640 1326 dbSNP
rs1348336809 1333 dbSNP
rs1354120561 1334 dbSNP
rs1289481455 1336 dbSNP
rs1277468815 1338 dbSNP
rs1342455165 1338 dbSNP
rs374926723 1339 dbSNP
rs1416467504 1340 dbSNP
rs1426389071 1341 dbSNP
rs1320703030 1342 dbSNP
rs192134797 1348 dbSNP
rs1287470458 1349 dbSNP
rs1453168624 1355 dbSNP
rs1240593086 1359 dbSNP
rs1487015677 1365 dbSNP
rs911700810 1374 dbSNP
rs1263061066 1375 dbSNP
rs1456930986 1378 dbSNP
rs986388583 1385 dbSNP
rs1249200049 1388 dbSNP
rs1211872121 1391 dbSNP
rs1312551526 1403 dbSNP
rs1277700064 1405 dbSNP
rs931862686 1406 dbSNP
rs1378961118 1408 dbSNP
rs920521339 1410 dbSNP
rs1054726490 1413 dbSNP
rs1297699130 1419 dbSNP
rs1375941925 1445 dbSNP
rs532592095 1446 dbSNP
rs1309925337 1454 dbSNP
rs1282148613 1459 dbSNP
rs148960200 1471 dbSNP
rs1224189504 1472 dbSNP
rs1310995940 1475 dbSNP
rs1351106843 1487 dbSNP
rs369042356 1490 dbSNP
rs1296659150 1493 dbSNP
rs1467836442 1494 dbSNP
rs961997623 1496 dbSNP
rs1236028421 1505 dbSNP
rs1472665749 1506 dbSNP
rs530067942 1516 dbSNP
rs1382369255 1519 dbSNP
rs915971583 1539 dbSNP
rs796467178 1544 dbSNP
rs562011511 1545 dbSNP
rs1416045173 1549 dbSNP
rs564591944 1566 dbSNP
rs766943250 1567 dbSNP
rs376875369 1568 dbSNP
rs1358574644 1574 dbSNP
rs542185074 1577 dbSNP
rs1333178685 1582 dbSNP
rs761311420 1583 dbSNP
rs1012435074 1585 dbSNP
rs1183205414 1587 dbSNP
rs1483400396 1588 dbSNP
rs1236560124 1600 dbSNP
rs958222360 1601 dbSNP
rs910032728 1602 dbSNP
rs372288846 1603 dbSNP
rs1355591257 1609 dbSNP
rs1286578477 1610 dbSNP
rs1456562640 1612 dbSNP
rs1239414445 1614 dbSNP
rs1316413810 1615 dbSNP
rs1305014206 1616 dbSNP
rs999818267 1622 dbSNP
rs1170935512 1623 dbSNP
rs1380105927 1627 dbSNP
rs1424348792 1629 dbSNP
rs573181603 1631 dbSNP
rs187555205 1632 dbSNP
rs1397853523 1634 dbSNP
rs1041783902 1636 dbSNP
rs1323791325 1640 dbSNP
rs1008606925 1650 dbSNP
rs890219873 1656 dbSNP
rs1362909149 1657 dbSNP
rs922858046 1664 dbSNP
rs546040103 1665 dbSNP
rs1344859817 1669 dbSNP
rs773593408 1669 dbSNP
rs975707623 1670 dbSNP
rs1219793644 1681 dbSNP
rs1050239412 1684 dbSNP
rs1316435278 1693 dbSNP
rs1453723883 1695 dbSNP
rs931802060 1697 dbSNP
rs1290823480 1703 dbSNP
rs1453590037 1714 dbSNP
rs920449773 1719 dbSNP
rs1246231788 1734 dbSNP
rs1037576312 1735 dbSNP
rs965722957 1741 dbSNP
rs1361535880 1742 dbSNP
rs1166229505 1743 dbSNP
rs1423923500 1747 dbSNP
rs1421462175 1748 dbSNP
rs1017339684 1752 dbSNP
rs1163664036 1754 dbSNP
rs1392401048 1760 dbSNP
rs907832472 1768 dbSNP
rs1322235714 1770 dbSNP
rs767837930 1774 dbSNP
rs576836031 1775 dbSNP
rs1185365238 1781 dbSNP
rs1339149127 1788 dbSNP
rs1266428302 1799 dbSNP
rs916639886 1799 dbSNP
rs34780092 1807 dbSNP
rs397959492 1807 dbSNP
rs60555820 1807 dbSNP
rs754113717 1807 dbSNP
rs770066285 1807 dbSNP
rs867594410 1807 dbSNP
rs113305755 1808 dbSNP
rs1488649381 1808 dbSNP
rs556816598 1814 dbSNP
rs999101568 1823 dbSNP
rs1263723658 1826 dbSNP
rs1204452094 1829 dbSNP
rs903059084 1831 dbSNP
rs184788955 1832 dbSNP
rs1032545868 1833 dbSNP
rs192197399 1836 dbSNP
rs1292888841 1837 dbSNP
rs115931654 1839 dbSNP
rs534947348 1840 dbSNP
rs1359136380 1850 dbSNP
rs1055745642 1852 dbSNP
rs187795868 1861 dbSNP
rs552325107 1862 dbSNP
rs552450514 1863 dbSNP
rs1047194983 1875 dbSNP
rs12003810 1879 dbSNP
rs922827294 1885 dbSNP
rs1242374758 1889 dbSNP
rs977017060 1896 dbSNP
rs942964489 1903 dbSNP
rs898972289 1904 dbSNP
rs910203732 1913 dbSNP
rs1478623918 1914 dbSNP
rs550052579 1919 dbSNP
rs907798713 1929 dbSNP
rs1424048561 1930 dbSNP
rs760935205 1930 dbSNP
rs772950401 1933 dbSNP
rs949396708 1938 dbSNP
rs1453601577 1941 dbSNP
rs916626228 1942 dbSNP
rs957107855 1943 dbSNP
rs200147597 1944 dbSNP
rs749330491 1945 dbSNP
rs1377861112 1948 dbSNP
rs977256867 1955 dbSNP
rs1242620939 1956 dbSNP
rs561224088 1957 dbSNP
rs1024120488 1958 dbSNP
rs1316403847 1961 dbSNP
rs1014107392 1962 dbSNP
rs1257661246 1963 dbSNP
rs182674502 1964 dbSNP
rs1199615782 1967 dbSNP
rs1238595692 1970 dbSNP
rs1458769043 1974 dbSNP
rs1034347533 1976 dbSNP
rs1237250559 1984 dbSNP
rs191398653 1988 dbSNP
rs1468961298 1990 dbSNP
rs1272669677 1991 dbSNP
rs1212031500 1993 dbSNP
rs888499847 2000 dbSNP
rs1047609410 2001 dbSNP
rs1020271168 2002 dbSNP
rs987093162 2009 dbSNP
rs1279116731 2012 dbSNP
rs1227068442 2032 dbSNP
rs117172293 2044 dbSNP
rs1372927181 2045 dbSNP
rs1028647405 2048 dbSNP
rs1304033888 2049 dbSNP
rs745857474 2051 dbSNP
rs1222831274 2053 dbSNP
rs995845279 2054 dbSNP
rs1196596693 2059 dbSNP
rs1369577305 2061 dbSNP
rs1250380547 2062 dbSNP
rs1323369952 2065 dbSNP
rs1466755084 2066 dbSNP
rs1400485075 2072 dbSNP
rs1041260146 2076 dbSNP
rs898940616 2084 dbSNP
rs1016024003 2087 dbSNP
rs1425060518 2088 dbSNP
rs781026027 2089 dbSNP
rs1460261455 2091 dbSNP
rs545965209 2096 dbSNP
rs576995399 2097 dbSNP
rs1354111813 2098 dbSNP
rs563396118 2098 dbSNP
rs1199449369 2109 dbSNP
rs1295299042 2111 dbSNP
rs1365602441 2112 dbSNP
rs137948800 2112 dbSNP
rs1342335039 2114 dbSNP
rs551266203 2115 dbSNP
rs1050053537 2118 dbSNP
rs1321902087 2119 dbSNP
rs1223318293 2123 dbSNP
rs1046742620 2124 dbSNP
rs1263102600 2127 dbSNP
rs530768345 2134 dbSNP
rs935681778 2135 dbSNP
rs895105065 2136 dbSNP
rs868451108 2138 dbSNP
rs1479103618 2146 dbSNP
rs1185102593 2147 dbSNP
rs925696929 2149 dbSNP
rs527811712 2152 dbSNP
rs1348422102 2157 dbSNP
rs967124587 2160 dbSNP
rs1298933270 2161 dbSNP
rs1362327307 2164 dbSNP
rs1195503805 2171 dbSNP
rs554098306 2173 dbSNP
rs917078091 2174 dbSNP
rs534338920 2175 dbSNP
rs1370847000 2177 dbSNP
rs1301927675 2178 dbSNP
rs777526845 2183 dbSNP
rs1448272983 2184 dbSNP
rs1377064852 2191 dbSNP
rs958582638 2193 dbSNP
rs1240186318 2194 dbSNP
rs1389358984 2196 dbSNP
rs1404056779 2201 dbSNP
rs1489519586 2204 dbSNP
rs1214294256 2205 dbSNP
rs1242105241 2207 dbSNP
rs572369748 2208 dbSNP
rs1172894389 2210 dbSNP
rs945516183 2211 dbSNP
rs912767143 2212 dbSNP
rs954324420 2217 dbSNP
rs987449411 2217 dbSNP
rs1034684835 2223 dbSNP
rs1441607836 2225 dbSNP
rs1233591739 2231 dbSNP
rs1181328348 2232 dbSNP
rs1382247331 2234 dbSNP
rs1005529293 2237 dbSNP
rs1258561503 2238 dbSNP
rs1317536319 2241 dbSNP
rs558850100 2243 dbSNP
rs974394830 2245 dbSNP
rs1381541574 2247 dbSNP
rs963045222 2254 dbSNP
rs1447067982 2259 dbSNP
rs1310739267 2260 dbSNP
rs1015950194 2266 dbSNP
rs952837659 2268 dbSNP
rs1222776216 2269 dbSNP
rs758146627 2273 dbSNP
rs1284143293 2274 dbSNP
rs1243031610 2284 dbSNP
rs1004676109 2287 dbSNP
rs187313070 2287 dbSNP
rs1350721639 2290 dbSNP
rs1024817645 2294 dbSNP
rs1179506980 2294 dbSNP
rs80160353 2299 dbSNP
rs1341849548 2308 dbSNP
rs867531510 2332 dbSNP
rs768185957 2338 dbSNP
rs895081848 2338 dbSNP
rs901299153 2340 dbSNP
rs1299958526 2346 dbSNP
rs950681162 2352 dbSNP
rs1041197598 2357 dbSNP
rs1007064026 2361 dbSNP
rs890016494 2362 dbSNP
rs1054456992 2366 dbSNP
rs936966805 2371 dbSNP
rs550357827 2374 dbSNP
rs1440804658 2382 dbSNP
rs1026390605 2387 dbSNP
rs760087418 2395 dbSNP
rs1042860949 2399 dbSNP
rs1041422169 2402 dbSNP
rs143413012 2420 dbSNP
rs562307481 2421 dbSNP
rs945513881 2424 dbSNP
rs1188987780 2432 dbSNP
rs917006083 2433 dbSNP
rs1199735475 2441 dbSNP
rs992581731 2443 dbSNP
rs1260214781 2448 dbSNP
rs912685932 2456 dbSNP
rs958551607 2457 dbSNP
rs372298204 2464 dbSNP
rs1478935666 2465 dbSNP
rs987008065 2467 dbSNP
rs1428596311 2471 dbSNP
rs141091410 2473 dbSNP
rs952686127 2476 dbSNP
rs111806340 2477 dbSNP
rs1284217827 2488 dbSNP
rs974321213 2490 dbSNP
rs1409041370 2511 dbSNP
rs1323568041 2512 dbSNP
rs994206877 2513 dbSNP
rs963013239 2519 dbSNP
rs1357865926 2522 dbSNP
rs965412995 2523 dbSNP
rs1219581177 2525 dbSNP
rs1280528107 2527 dbSNP
rs527719205 2528 dbSNP
rs983572774 2529 dbSNP
rs1290932641 2532 dbSNP
rs1007032843 2535 dbSNP
rs1353298884 2536 dbSNP
rs1025204888 2539 dbSNP
rs559666221 2554 dbSNP
rs552238650 2555 dbSNP
rs534011670 2556 dbSNP
rs1474841501 2558 dbSNP
rs1316141545 2564 dbSNP
rs1415593354 2569 dbSNP
rs1422178989 2570 dbSNP
rs563300032 2575 dbSNP
rs543608247 2583 dbSNP
rs1401152527 2588 dbSNP
rs1320628961 2590 dbSNP
rs1325036259 2594 dbSNP
rs1227243984 2605 dbSNP
rs1284971844 2606 dbSNP
rs1358802594 2611 dbSNP
rs1393050160 2613 dbSNP
rs902798768 2615 dbSNP
rs966260380 2621 dbSNP
rs1488537356 2629 dbSNP
rs959221056 2642 dbSNP
rs574166410 2649 dbSNP
rs1188042678 2650 dbSNP
rs945718134 2658 dbSNP
rs1415982009 2660 dbSNP
rs1442431381 2661 dbSNP
rs115888834 2665 dbSNP
rs1056822616 2666 dbSNP
rs1042398125 2668 dbSNP
rs1475948464 2673 dbSNP
rs1241985513 2679 dbSNP
rs149875819 2688 dbSNP
rs1383489576 2701 dbSNP
rs1381988988 2704 dbSNP
rs1335302988 2705 dbSNP
rs576579389 2709 dbSNP
rs1450727169 2710 dbSNP
rs750951446 2711 dbSNP
rs1354488293 2712 dbSNP
rs182885390 2714 dbSNP
rs984013125 2725 dbSNP
rs1258857593 2726 dbSNP
rs10987959 2744 dbSNP
rs1051646780 2751 dbSNP
rs1018175372 2753 dbSNP
rs931218117 2755 dbSNP
rs1200782342 2757 dbSNP
rs1214351590 2758 dbSNP
rs1459659186 2760 dbSNP
rs1452830434 2763 dbSNP
rs1182587710 2767 dbSNP
rs10987958 2770 dbSNP
rs571755578 2775 dbSNP
rs771355228 2776 dbSNP
rs972702706 2782 dbSNP
rs1332159527 2783 dbSNP
rs932805791 2786 dbSNP
rs1259628234 2796 dbSNP
rs1214877543 2798 dbSNP
rs1361032843 2803 dbSNP
rs1173452679 2804 dbSNP
rs1408774969 2815 dbSNP
rs1468622819 2815 dbSNP
rs879861880 2815 dbSNP
rs1393188789 2816 dbSNP
rs1304984545 2817 dbSNP
rs1268337397 2823 dbSNP
rs1335030569 2823 dbSNP
rs563010140 2824 dbSNP
rs1373256904 2825 dbSNP
rs1326602418 2828 dbSNP
rs558812919 2834 dbSNP
rs1458832929 2835 dbSNP
rs921473264 2846 dbSNP
rs113045760 2851 dbSNP
rs941624695 2862 dbSNP
rs1410867309 2865 dbSNP
rs1419334087 2867 dbSNP
rs908832368 2871 dbSNP
rs983155934 2872 dbSNP
rs1176222061 2878 dbSNP
rs1254205397 2884 dbSNP
rs950489930 2885 dbSNP
rs1463727191 2889 dbSNP
rs768082640 2898 dbSNP
rs1395848323 2900 dbSNP
rs992340150 2905 dbSNP
rs959188480 2906 dbSNP
rs1239560701 2910 dbSNP
rs1424155145 2911 dbSNP
rs1222626069 2913 dbSNP
rs965382057 2918 dbSNP
rs1308824619 2919 dbSNP
rs748730535 2922 dbSNP
rs10987957 2927 dbSNP
rs1250466541 2929 dbSNP
rs1488517406 2931 dbSNP
rs1270679656 2939 dbSNP
rs1224123758 2944 dbSNP
rs576674763 2949 dbSNP
rs556451251 2950 dbSNP
rs1199097274 2952 dbSNP
rs1000747808 2953 dbSNP
rs967958197 2954 dbSNP
rs1021347195 2963 dbSNP
rs186341060 2964 dbSNP
rs567744470 2969 dbSNP
rs1305059545 2978 dbSNP
rs891145250 2983 dbSNP
rs1051187479 2985 dbSNP
rs762018062 2986 dbSNP
rs1212653823 2994 dbSNP
rs769393115 3009 dbSNP
rs546533847 3014 dbSNP
rs1443257071 3015 dbSNP
rs561792417 3016 dbSNP
rs899978600 3018 dbSNP
rs1288993442 3019 dbSNP
rs547941756 3021 dbSNP
rs1222382446 3027 dbSNP
rs1243267391 3031 dbSNP
rs1038504807 3033 dbSNP
rs1185196954 3039 dbSNP
rs541910539 3040 dbSNP
rs1261244985 3041 dbSNP
rs773509982 3046 dbSNP
rs138995503 3047 dbSNP
rs1383474374 3056 dbSNP
rs150719980 3061 dbSNP
rs11792113 3063 dbSNP
rs1159172578 3073 dbSNP
rs1452023072 3076 dbSNP
rs1428358355 3082 dbSNP
rs1288095764 3083 dbSNP
rs1379391902 3084 dbSNP
rs1239503856 3087 dbSNP
rs1177400693 3088 dbSNP
rs1007696624 3089 dbSNP
rs75534058 3091 dbSNP
rs1230850970 3093 dbSNP
rs532261042 3104 dbSNP
rs1214045730 3106 dbSNP
rs1285550135 3106 dbSNP
rs1319280896 3106 dbSNP
rs200734659 3106 dbSNP
rs545464622 3106 dbSNP
rs778531699 3106 dbSNP
rs745500563 3107 dbSNP
rs1398913285 3108 dbSNP
rs1410009163 3108 dbSNP
rs908806585 3108 dbSNP
rs1047791411 3110 dbSNP
rs201946902 3110 dbSNP
rs1334251946 3112 dbSNP
rs1381652180 3115 dbSNP
rs1279506340 3122 dbSNP
rs774733166 3129 dbSNP
rs1280818105 3134 dbSNP
rs1032916353 3145 dbSNP
rs1232080771 3146 dbSNP
rs1001048484 3147 dbSNP
rs1222579624 3151 dbSNP
rs1309308197 3153 dbSNP
rs7865290 3154 dbSNP
rs1461055870 3164 dbSNP
rs1205259705 3171 dbSNP
rs1021181368 3172 dbSNP
rs1176547923 3176 dbSNP
rs1372825661 3177 dbSNP
rs1429957765 3178 dbSNP
rs1481282831 3196 dbSNP
rs1174022263 3211 dbSNP
rs1296675734 3219 dbSNP
rs991899358 3220 dbSNP
rs549676002 3221 dbSNP
rs529872950 3228 dbSNP
rs1376509027 3229 dbSNP
rs553830096 3229 dbSNP
rs764392269 3232 dbSNP
rs1346746120 3242 dbSNP
rs560646561 3245 dbSNP
rs1281807359 3253 dbSNP
rs533868871 3255 dbSNP
rs1323017967 3259 dbSNP
rs1366078388 3265 dbSNP
rs1056750521 3272 dbSNP
rs937749527 3276 dbSNP
rs540766944 3282 dbSNP
rs937085740 3286 dbSNP
rs1203976836 3290 dbSNP
rs1269452166 3296 dbSNP
rs905649038 3299 dbSNP
rs1196940172 3308 dbSNP
rs1428358039 3313 dbSNP
rs979275539 3318 dbSNP
rs1169278044 3321 dbSNP
rs1416997065 3324 dbSNP
rs778332441 3328 dbSNP
rs1048672179 3333 dbSNP
rs142100225 3337 dbSNP
rs1366690753 3341 dbSNP
rs931178085 3345 dbSNP
rs955394675 3350 dbSNP
rs988504140 3350 dbSNP
rs918475933 3359 dbSNP
rs1431984404 3370 dbSNP
rs1272124047 3373 dbSNP
rs1337722462 3375 dbSNP
rs1214021180 3387 dbSNP
rs972630705 3392 dbSNP
rs1220143946 3407 dbSNP
rs996848623 3411 dbSNP
rs527393243 3420 dbSNP
rs573033852 3425 dbSNP
rs1475410181 3428 dbSNP
rs899946200 3432 dbSNP
rs1195119986 3439 dbSNP
rs1239950844 3441 dbSNP
rs1474893719 3444 dbSNP
rs1163594543 3445 dbSNP
rs912563440 3462 dbSNP
rs559892535 3463 dbSNP
rs1005662676 3464 dbSNP
rs1390709909 3465 dbSNP
rs1383080686 3467 dbSNP
rs114030729 3470 dbSNP
rs1489203142 3474 dbSNP
rs768176759 3479 dbSNP
rs1047307087 3482 dbSNP
rs1032430224 3483 dbSNP
rs950382695 3486 dbSNP
rs148642677 3487 dbSNP
rs1290914412 3489 dbSNP
rs182446163 3497 dbSNP
rs759673346 3501 dbSNP
rs1235446840 3505 dbSNP
rs926349565 3506 dbSNP
rs1356473636 3518 dbSNP
rs1293007802 3522 dbSNP
rs1013774168 3526 dbSNP
rs749300548 3530 dbSNP
rs1442217067 3532 dbSNP
rs1289980990 3533 dbSNP
rs1368360129 3536 dbSNP
rs1454768509 3544 dbSNP
rs1160603466 3550 dbSNP
rs776361401 3554 dbSNP
rs1337605287 3555 dbSNP
rs77326415 3559 dbSNP
rs192056035 3560 dbSNP
rs1336204388 3561 dbSNP
rs1001219617 3566 dbSNP
rs74659866 3567 dbSNP
rs1328218009 3584 dbSNP
rs1048154977 3586 dbSNP
rs1264566842 3593 dbSNP
rs549274940 3594 dbSNP
rs571775499 3595 dbSNP
rs1036904941 3598 dbSNP
rs943928113 3600 dbSNP
rs1184599883 3601 dbSNP
rs147506883 3606 dbSNP
rs777759977 3610 dbSNP
rs11557597 3611 dbSNP
rs1177625883 3613 dbSNP
rs771818300 3613 dbSNP
rs80062234 3614 dbSNP
rs369155223 3618 dbSNP
rs1302279114 3626 dbSNP
rs1215654833 3640 dbSNP
rs1397281935 3645 dbSNP
rs1005630090 3647 dbSNP
rs1326733098 3650 dbSNP
rs925331431 3653 dbSNP
rs1335668625 3655 dbSNP
rs979528172 3657 dbSNP
rs370202132 3661 dbSNP
rs1026239794 3662 dbSNP
rs967221239 3666 dbSNP
rs747874780 3672 dbSNP
rs550094998 3677 dbSNP
rs1248970423 3678 dbSNP
rs1328617692 3678 dbSNP
rs1483030912 3678 dbSNP
rs1200510696 3689 dbSNP
rs1431916239 3690 dbSNP
rs1175620422 3694 dbSNP
rs1373896985 3694 dbSNP
rs530405971 3694 dbSNP
rs992321741 3699 dbSNP
rs1056089664 3704 dbSNP
rs960913868 3715 dbSNP
rs1304946982 3728 dbSNP
rs35961762 3728 dbSNP
rs1033898791 3731 dbSNP
rs367947297 3746 dbSNP
rs904900571 3748 dbSNP
rs1308912487 3749 dbSNP
rs1382195973 3757 dbSNP
rs567082163 3758 dbSNP
rs1027088912 3760 dbSNP
rs1359227248 3775 dbSNP
rs1341997289 3780 dbSNP
rs754391197 3781 dbSNP
rs1223861367 3785 dbSNP
rs547192109 3789 dbSNP
rs896940730 3801 dbSNP
rs1036832433 3802 dbSNP
rs1487692144 3805 dbSNP
rs1132241 3813 dbSNP
rs1262648630 3815 dbSNP
rs1008066508 3816 dbSNP
rs1043489879 3822 dbSNP
rs1389619846 3823 dbSNP
rs1461538398 3826 dbSNP
rs891025577 3828 dbSNP
rs1049679842 3829 dbSNP
rs1393195982 3830 dbSNP
rs1162369921 3831 dbSNP
rs946466701 3833 dbSNP
rs1363546457 3839 dbSNP
rs1380180637 3849 dbSNP
rs1463322636 3862 dbSNP
rs1373503408 3867 dbSNP
rs1169624353 3869 dbSNP
rs1426610349 3870 dbSNP
rs1254844770 3871 dbSNP
rs932590102 3878 dbSNP
rs527355470 3881 dbSNP
rs143245083 3882 dbSNP
rs373945906 3884 dbSNP
rs1320464529 3893 dbSNP
rs1044157130 3894 dbSNP
rs1261691260 3909 dbSNP
rs139349383 3914 dbSNP
rs1186907273 3926 dbSNP
rs1247689076 3929 dbSNP
rs1445297216 3931 dbSNP
rs531364081 3941 dbSNP
rs147314271 3942 dbSNP
rs1159489441 3947 dbSNP
rs922509089 3950 dbSNP
rs60233055 3959 dbSNP
rs964009848 3960 dbSNP
rs879144039 3961 dbSNP
rs926810475 3963 dbSNP
rs1319431403 3964 dbSNP
rs909918773 3967 dbSNP
rs138126006 3969 dbSNP
rs1312285281 3970 dbSNP
rs1377548931 3972 dbSNP
rs751903389 3976 dbSNP
rs758572217 3995 dbSNP
rs879042654 3995 dbSNP
rs952436259 4000 dbSNP
rs554362947 4001 dbSNP
rs752941816 4005 dbSNP
rs540851253 4007 dbSNP
rs764486665 4011 dbSNP
rs879075388 4011 dbSNP
rs1392817048 4012 dbSNP
rs540022869 4019 dbSNP
rs186078555 4024 dbSNP
rs879048344 4026 dbSNP
rs558267784 4032 dbSNP
rs1460277791 4041 dbSNP
rs960221128 4042 dbSNP
rs1008035503 4043 dbSNP
rs1177703224 4044 dbSNP
rs1396745307 4050 dbSNP
rs1410120663 4068 dbSNP
rs1471474336 4069 dbSNP
rs878877301 4071 dbSNP
rs1034601072 4080 dbSNP
rs1429504769 4082 dbSNP
rs763145727 4083 dbSNP
rs1001821971 4084 dbSNP
rs904827554 4091 dbSNP
rs752854460 4111 dbSNP
rs1299225161 4116 dbSNP
rs765498593 4122 dbSNP
rs537830531 4130 dbSNP
rs1052221108 4133 dbSNP
rs996775009 4145 dbSNP
rs11557596 4148 dbSNP
rs1195525192 4153 dbSNP
rs1482287667 4161 dbSNP
rs373678735 4169 dbSNP
rs538220159 4169 dbSNP
rs903805178 4176 dbSNP
rs1235760743 4180 dbSNP
rs759492020 4189 dbSNP
rs1205369407 4197 dbSNP
rs150406447 4199 dbSNP
rs1272624793 4201 dbSNP
rs370961852 4204 dbSNP
rs79387874 4210 dbSNP
rs945384300 4211 dbSNP
rs536095466 4219 dbSNP
rs1377114218 4226 dbSNP
rs568703224 4229 dbSNP
rs1409994890 4231 dbSNP
rs1171947414 4232 dbSNP
rs1434080936 4233 dbSNP
rs567244571 4239 dbSNP
rs1325901745 4240 dbSNP
rs1056458536 4251 dbSNP
rs114111960 4253 dbSNP
rs1308020193 4254 dbSNP
rs926808169 4257 dbSNP
rs981380192 4258 dbSNP
rs570492822 4259 dbSNP
rs1344607298 4262 dbSNP
rs984545645 4264 dbSNP
rs1275211805 4265 dbSNP
rs547436360 4267 dbSNP
rs918650082 4267 dbSNP
rs1292462437 4270 dbSNP
rs1490773534 4274 dbSNP
rs930875825 4276 dbSNP
rs1245732182 4288 dbSNP
rs992967830 4289 dbSNP
rs1471203104 4294 dbSNP
rs960190136 4301 dbSNP
rs1364543049 4308 dbSNP
rs1034527386 4316 dbSNP
rs1366785430 4317 dbSNP
rs770750447 4335 dbSNP
rs973710437 4348 dbSNP
rs527514914 4359 dbSNP
rs1322021397 4360 dbSNP
rs968977487 4361 dbSNP
rs1431738334 4365 dbSNP
rs1471814052 4368 dbSNP
rs527685179 4369 dbSNP
rs961045282 4373 dbSNP
rs1015298204 4384 dbSNP
rs1227831802 4387 dbSNP
rs1281685245 4388 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugguUUCCGUCGGGACCGuuga 5'
              |||| : ||||| |    
Target 5' --acAAGGAGACCCUGUCucu- 3'
1 - 19
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000372890.4 | 3UTR | ACAAGGAGACCCUGUCUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000372890.4 | 3UTR | ACAAGGAGACCCUGUCUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
167 hsa-miR-6501-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT156859 FAM126B family with sequence similarity 126 member B 2 2
MIRT173355 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT369102 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT442037 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT442829 AZIN1 antizyme inhibitor 1 2 2
MIRT443729 CCND2 cyclin D2 2 2
MIRT453771 NUCB1 nucleobindin 1 2 10
MIRT453875 IFRD1 interferon related developmental regulator 1 2 12
MIRT454229 OSBPL10 oxysterol binding protein like 10 2 11
MIRT458829 RPUSD2 RNA pseudouridylate synthase domain containing 2 2 2
MIRT459898 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 10
MIRT464162 VMP1 vacuole membrane protein 1 2 15
MIRT495411 SMAD2 SMAD family member 2 2 2
MIRT496906 TRIM56 tripartite motif containing 56 2 2
MIRT498653 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 6
MIRT498706 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 10
MIRT499308 ZNF485 zinc finger protein 485 2 6
MIRT499707 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 10
MIRT499755 CIRH1A UTP4, small subunit processome component 2 6
MIRT499827 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT503691 MAVS mitochondrial antiviral signaling protein 2 2
MIRT512418 LAYN layilin 2 4
MIRT516232 RAB3B RAB3B, member RAS oncogene family 2 2
MIRT522554 MCAM melanoma cell adhesion molecule 2 4
MIRT523760 FBXO27 F-box protein 27 2 4
MIRT525107 PRKD2 protein kinase D2 2 2
MIRT525919 KIAA0391 KIAA0391 2 2
MIRT527246 COMMD6 COMM domain containing 6 2 2
MIRT527564 ADCY7 adenylate cyclase 7 2 2
MIRT528764 CD1D CD1d molecule 2 2
MIRT529362 YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta 2 4
MIRT529464 ZNF546 zinc finger protein 546 2 2
MIRT530676 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531635 C19orf52 translocase of inner mitochondrial membrane 29 2 4
MIRT531909 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 2
MIRT532172 SEC14L5 SEC14 like lipid binding 5 2 4
MIRT534234 SLC25A16 solute carrier family 25 member 16 2 4
MIRT534561 RRAGD Ras related GTP binding D 2 2
MIRT534971 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536738 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT538544 CELF1 CUGBP Elav-like family member 1 2 2
MIRT540462 ZNF71 zinc finger protein 71 2 2
MIRT540554 PPIC peptidylprolyl isomerase C 2 2
MIRT543593 KIAA1549 KIAA1549 2 2
MIRT543963 RNF20 ring finger protein 20 2 2
MIRT544047 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT544670 AP1S1 adaptor related protein complex 1 sigma 1 subunit 2 2
MIRT550665 TRAF1 TNF receptor associated factor 1 2 2
MIRT558540 CSNK1G3 casein kinase 1 gamma 3 2 4
MIRT574917 Vmp1 vacuole membrane protein 1 2 9
MIRT575298 Osbpl10 oxysterol binding protein-like 10 2 7
MIRT607960 SNX22 sorting nexin 22 2 2
MIRT610649 TIPRL TOR signaling pathway regulator 2 8
MIRT615899 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT617438 CCS copper chaperone for superoxide dismutase 2 2
MIRT617510 C5orf45 MRN complex interacting protein 2 2
MIRT617548 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT620565 WBSCR27 methyltransferase like 27 2 2
MIRT623166 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT624161 DGKE diacylglycerol kinase epsilon 2 2
MIRT626090 MKLN1 muskelin 1 2 2
MIRT627010 FIG4 FIG4 phosphoinositide 5-phosphatase 2 2
MIRT627073 SF3A1 splicing factor 3a subunit 1 2 2
MIRT627136 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT627340 TSHZ2 teashirt zinc finger homeobox 2 2 2
MIRT627436 TAS2R5 taste 2 receptor member 5 2 2
MIRT628273 CYB5D1 cytochrome b5 domain containing 1 2 2
MIRT629091 F2RL1 F2R like trypsin receptor 1 2 4
MIRT629282 UNC13A unc-13 homolog A 2 2
MIRT630122 ARHGEF5 Rho guanine nucleotide exchange factor 5 2 2
MIRT630247 SMTNL2 smoothelin like 2 2 2
MIRT631260 CENPM centromere protein M 2 2
MIRT631336 CD300E CD300e molecule 2 2
MIRT631399 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT632593 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT632991 DUSP18 dual specificity phosphatase 18 2 2
MIRT633079 CXorf21 chromosome X open reading frame 21 2 2
MIRT634223 TMEM132B transmembrane protein 132B 2 2
MIRT635046 MYH11 myosin heavy chain 11 2 2
MIRT636444 LRCH3 leucine rich repeats and calponin homology domain containing 3 2 2
MIRT636649 CDK4 cyclin dependent kinase 4 2 2
MIRT637129 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT637282 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT637527 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT637783 OLA1 Obg like ATPase 1 2 2
MIRT637920 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT638238 SLC1A5 solute carrier family 1 member 5 2 2
MIRT638444 PLXDC2 plexin domain containing 2 2 2
MIRT639765 GPR45 G protein-coupled receptor 45 2 2
MIRT640437 ERVMER34-1 endogenous retrovirus group MER34 member 1, envelope 2 2
MIRT643006 ZNF829 zinc finger protein 829 2 2
MIRT644233 SLC35E3 solute carrier family 35 member E3 2 2
MIRT644661 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT644957 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT645086 SLC35E2B solute carrier family 35 member E2B 2 2
MIRT645256 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT645861 GBP6 guanylate binding protein family member 6 2 2
MIRT645987 ACP6 acid phosphatase 6, lysophosphatidic 2 2
MIRT646502 FAM217B family with sequence similarity 217 member B 2 2
MIRT646811 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT647706 NFX1 nuclear transcription factor, X-box binding 1 2 2
MIRT649657 TEP1 telomerase associated protein 1 2 2
MIRT650550 YIPF4 Yip1 domain family member 4 2 2
MIRT650785 GSR glutathione-disulfide reductase 2 2
MIRT651461 XIAP X-linked inhibitor of apoptosis 2 2
MIRT652098 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT654117 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT658901 DPY19L4 dpy-19 like 4 2 2
MIRT659370 CREG2 cellular repressor of E1A stimulated genes 2 2 2
MIRT662537 MTAP methylthioadenosine phosphorylase 2 2
MIRT662617 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 2
MIRT663491 IYD iodotyrosine deiodinase 2 2
MIRT663899 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT664552 MKI67IP nucleolar protein interacting with the FHA domain of MKI67 1 1
MIRT664582 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT664953 PTCD3 pentatricopeptide repeat domain 3 2 2
MIRT665193 ESF1 ESF1 nucleolar pre-rRNA processing protein homolog 2 2
MIRT665446 WDR17 WD repeat domain 17 2 2
MIRT665894 TCEANC2 transcription elongation factor A N-terminal and central domain containing 2 2 2
MIRT666480 SBNO1 strawberry notch homolog 1 2 2
MIRT666514 RNF170 ring finger protein 170 2 2
MIRT666692 RBM23 RNA binding motif protein 23 2 2
MIRT666791 PSMD1 proteasome 26S subunit, non-ATPase 1 2 2
MIRT667453 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT667553 LRAT lecithin retinol acyltransferase 2 4
MIRT667744 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT668080 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT668114 GK5 glycerol kinase 5 (putative) 2 2
MIRT668501 ESYT2 extended synaptotagmin 2 2 2
MIRT668942 CNKSR3 CNKSR family member 3 2 2
MIRT670408 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT671134 CD226 CD226 molecule 2 2
MIRT671919 PLEKHS1 pleckstrin homology domain containing S1 2 4
MIRT672287 GP2 glycoprotein 2 2 2
MIRT672427 POLR2D RNA polymerase II subunit D 2 2
MIRT672762 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT672923 LRRC2 leucine rich repeat containing 2 2 2
MIRT673150 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT673309 UBE2G2 ubiquitin conjugating enzyme E2 G2 2 2
MIRT673560 PLA2G16 phospholipase A2 group XVI 2 2
MIRT673895 DCTN6 dynactin subunit 6 2 2
MIRT674513 PRR23A proline rich 23A 2 2
MIRT674614 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT674747 SLC16A1 solute carrier family 16 member 1 2 2
MIRT675693 PIWIL1 piwi like RNA-mediated gene silencing 1 2 2
MIRT675890 SNAP29 synaptosome associated protein 29 2 2
MIRT685271 KIAA1143 KIAA1143 2 2
MIRT686057 KCNA7 potassium voltage-gated channel subfamily A member 7 2 2
MIRT693886 C3orf62 chromosome 3 open reading frame 62 2 2
MIRT695594 TMEM199 transmembrane protein 199 2 2
MIRT696592 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT698041 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT699907 RUNDC1 RUN domain containing 1 2 2
MIRT706608 CYB5B cytochrome b5 type B 2 2
MIRT706628 PNPT1 polyribonucleotide nucleotidyltransferase 1 2 2
MIRT706640 NCBP2 nuclear cap binding protein subunit 2 2 2
MIRT706676 COL13A1 collagen type XIII alpha 1 chain 2 2
MIRT706723 RFK riboflavin kinase 2 2
MIRT706857 MAFF MAF bZIP transcription factor F 2 2
MIRT706891 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2 2
MIRT706958 FANCC Fanconi anemia complementation group C 2 2
MIRT706976 XPO5 exportin 5 2 2
MIRT707010 RRP36 ribosomal RNA processing 36 2 2
MIRT707028 ACTR5 ARP5 actin related protein 5 homolog 2 2
MIRT707068 MED29 mediator complex subunit 29 2 2
MIRT713253 ZFP30 ZFP30 zinc finger protein 2 2
MIRT719130 NR2F6 nuclear receptor subfamily 2 group F member 6 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6501 Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-6501 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-6501-5p Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6501-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-6501-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-6501-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-6501-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6501-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-6501-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6501-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6501-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-6501-5p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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