pre-miRNA Information
pre-miRNA hsa-mir-1245a   
Genomic Coordinates chr2: 188978092 - 188978161
Description Homo sapiens miR-1245a stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1245a
Sequence 45| AAGUGAUCUAAAGGCCUACAU |65
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN31562560 15 COSMIC
COSN26581044 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs906938680 2 dbSNP
rs1159117523 3 dbSNP
rs780486044 6 dbSNP
rs771479866 17 dbSNP
rs1002976932 18 dbSNP
rs1428029219 19 dbSNP
Putative Targets

Gene Information
Gene Symbol TMEM181   
Synonyms GPR178, KIAA1423
Description transmembrane protein 181
Transcript NM_020823   
Expression
Putative miRNA Targets on TMEM181
3'UTR of TMEM181
(miRNA target sites are highlighted)
>TMEM181|NM_020823|3'UTR
   1 GCCCCGGCCAGCCCAGCGAGGCGACAAGATGCCTGGATGCTTTCCCCGGTGACCGTCTGCTGACCTTCCCCTGTTATATT
  81 CAGATTTTTCTTACAAGCAGAGATTTCCTGTTCATTTGTTTACATATTTTTTTAAAGGAAAACCAAAACTGAGGGTAAAT
 161 TTAAATGTTTAGCCAAATTTATTGTCATGGTGGCTACGAGAAGAGGCATTGATAACAAGTTTCAACAGCCAAATCCTTTT
 241 TTACAGAGATTTCAGATGAGCGTGTTTTCAGTGATGAGGAAATTTCACGTTTTTAGTACAGTGAATTATGTACTTTTTTT
 321 TCCTGTAATCATTCACTGATTCCAAGTTCACGGGCAGCCTGTGACTAGGTCCTCAGCGTGACAGCATCACCCTCTTTCTT
 401 CCCTTTTCCATGGTACTGTTTTGTGACCCTTTAAACTCAAAGGGAAGCCTTATCTGTGGCTGCTTCAGGGCAGTCCTTCC
 481 TCGTTGAGTGGCCAGTGCCCTGGGTAACCAGGTGGCTGAAGTGATTGGTCAGTTATGTGGACTGCGTTTTGTGCAGTGTG
 561 TGAGTTATGACTCATCGGGAATGGGAGATGCTGGGGTTCCAACCCTTCACGTCACCAAAGGGGAAGTAATAGTGTGGAGT
 641 TCTGAGGAGGGTTTGATAAGTTGAATAAGGAAAGGCTAAGATAATTTACAGGTTACCAACTCATGTGGGGAAGGTCTTAC
 721 TGCCATGGTGCTTTTCAGGGGCCTGTGTGTACACACATGATTAAATGGATTTGCCTGTGGGAGGTATGGGCAGGAGAGGA
 801 ACCCTTACCATTCCAGTAAATAGCAGTTTCTGCAATTCTGTTGAATATGAAATGCCATAGAGCTTTATTTATTTATGTAA
 881 GTAAAAGCTAAATGAGGGGCCAGGTGCAGTGGCTCACATCTGTAATCTCAACACTTTGGGAGGCCAAGGTGGGAGGATCA
 961 CTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAACACAGGGAGACCCCGTCTCTATAAAACATTTAGAAAGTTGGCTGGG
1041 CATGCTGGGGCATGCCCATAGTCCCAGCTACTCAGGAGGCTGAGGTGGGAGGATTGCTTGAGCCCTGGAGGTCAAGGCTG
1121 CAGTGAGCCATGATTGCACCACTGCACTCCAGCCTGGGTGTCAGAGCGAGAACCCGTGTCATAAATAAATAAAGCTACAT
1201 GAAAGATTGATAGAATATTTTAGATTATTTATTGGCCAAAAGTTTTTAAAACTCATATTTGGAAGCAAAATGAAAAGCAA
1281 GTAAAATGTTTTAAATGGTTCATGGAAAACGTATTTGGGTAGAAGGCAACTCGTGCTTCCGGAAGGGGTTCCCTGTCCTC
1361 CATGTGTCCACATGGCGGTCAGGTAGGGACGACCTGTTCTGTAAAGTCCTTGGCACTGCTGAATCTGTGGCATCATAGAA
1441 GGCCCTGGAGCTTCCCCGTTCCTTTCAGTCAGGGACTCCATATAGAGTCTCATGTGGACGTCTCCCGTGCTTTCCTCTTG
1521 ACCTCTACAGTCACACTTCTGTTAACATCTGGTAACTGTGGGCAACCTGACTGATGCCGTCTTGGCAATTGAGGTCCAGA
1601 AGATGATAGTTCCGCAACGCAAGCAGTACCTACTTTTTTTCTTCATCTATGCATTGACTCTCAGATTACCATGCAGAGCT
1681 TCACGTTATCATCCACGTTAAGTAGTGCTAGGTAGGACCTTAGAGATGTTCATGAGAAACTATTTGTTATGACTTTCCTT
1761 TGTATCTTTCCTTTTAATTTAAACTTTAATGATAATGTACTTTTAATATGGATTCTATTCACATTTGTTTTAAAAACCTT
1841 GTAAATATGAATGTTTAAGACAACTTACTGCAAGGGTAATTCAAGTTTACATGATTTTTAAATTTGCAATGATGTTTTTT
1921 TTATTCTGTGTATTGAAAAAAATTTTCTGTTACCAAATTTTACAACTTCTAATAAGACTACTATAACTTTATGTAAACTG
2001 ATGAAGATGTGCTGATTAACATATTCTGTGATATGGTTTACAACTTTTAATCATAATTGTCCATGATTTTGGAATGCTGT
2081 TATTTATCAGTAAATGTAAAATATTTGAGGCATTTAGCCATACACACACTAGAACTTTTTAAAACTTTGTCCTATAGTGT
2161 AATTATAAACTGATGACTATTATCTTCATACATTGAGTCTTCATGCATCAATGAAATGAAAAATATAGGATTATTTATTT
2241 ACTTTTTGTAACTAAGTGGGAAATAAGAAAAAAAGTTAGAAAGTACTTAAGGGGAAAATCGTTCTTACTAAGTCATGTAT
2321 TTTCAACTTGTCTTCCCTGGTATATCATAAATACCGACATATTACATACCCCATGTAAAATTTTGCTTAAACTCTCTAGC
2401 ACTTGGCATGTAGAATATGTACCATAGGTATCAGGTTAAAACACTAAAGTCTGCCAGAAACTTTTGACAGTAGCAAGAAA
2481 ATTGTTGAAGAAAAAATAAATTATTTACTGAGGGTAGTTATGTTAAAGTTTTGCGAACTTAAAGGGCTGACTTTAGTTCC
2561 TTCATGGTAATGGCTTGAGTAACATCATCTTTGGGATTTTTTAAATACTGGTCCAGTCTAGGAGAACCTGGAAGATGACC
2641 AGAGGTATTTCAGTTTCCCTAGGGAGAGCTTCGTTATCCATGTGGATGATAAGTCTGCTTGATTTATTATTAAATCATTA
2721 TAGCAGTGAAGTGGTGCCATTTTCTCTCTCTTAAGCCCCATTTGAAAGGCTAGAGAAGGGGATATATATACTATGTTCAA
2801 GGTTTGTAAGGTTGTTAATGTACATAATTGCAGATTGCAATAAAAGCTTAGATACATTTTGTAAACCCAACCCACTAAAT
2881 GAGCAGGTTACAAGACAAATGTCACCAGCCTCAAGTATTTTATGAACTATTTACTGAGGGTAGTTATGTTAAATAGATTA
2961 TAATGTGGTAAATTATTTCCTGAATCCTTTATCACAGGAAAAACACAGACCCTCATAAAAGGGATAATTAAAACGGATGT
3041 GTCTGAACATTTAGTGAAGATGAGACTTAAAACATGAAAGTGTATTTGTGTATTTTGAGGGTTTTAGAAACCGGTTGCCT
3121 TAGAGGTTAGACTTTTGAAGAAAAAAAAAAAAAGATACAGATCTTTTCCCCTGGCCAAAGGGAAGTTGTATTAGTCTGTG
3201 ACATCTTGTGATGCTGTTTATCTTGGTTTGACATTGGAGATACGCTAGTAACTGTGATACCATACTATAAAACAGAAGAA
3281 TTTTCTGCTACTAAAAACTGCCTTTTTACAAAATGACTGTAAATATTTGTAAAATAAAATAACACTAAACTTTAAGCCCA
3361 AAAGGAGAGATAGAGCCATGTGTTCAGTTGTGGACCTGTCCGTGGGGCACAGTGCCACCCCATCACAGTGTTGCTGTCAT
3441 CAGGCAAAAGTGAATGTTTGTTTATGGCAAATTCGTCTTTTGCGAATGGCTTAATTCTGACACTACCTTTCTGGGAAATG
3521 TTAATAAATTTTTAATATTCACTTCTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uacaUCCGGAAAUCUAGUGAa 5'
              |||:    :||||||| 
Target 5' gccaAGGTGGGAGGATCACTt 3'
943 - 963 145.00 -15.40
2
miRNA  3' uacauccgGAAAUCUAGUGAa 5'
                  :|||||||:|:| 
Target 5' atagaataTTTTAGATTATTt 3'
1210 - 1230 129.00 -10.90
3
miRNA  3' uacAUCCGGAAAUCUAGUGaa 5'
             | | |: | ||||:||  
Target 5' gcaTTGACTCTCAGATTACca 3'
1651 - 1671 118.00 -6.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30158925 6 COSMIC
COSN30126275 37 COSMIC
COSN216916 115 COSMIC
COSN30675076 134 COSMIC
COSN26808402 281 COSMIC
COSN16442009 532 COSMIC
COSN16597728 682 COSMIC
COSN2150521 806 COSMIC
COSN15831744 935 COSMIC
COSN21761922 1071 COSMIC
COSN17075951 1580 COSMIC
COSN17076505 2438 COSMIC
COSN28992994 3154 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1166796539 1 dbSNP
rs905867115 2 dbSNP
rs767838490 5 dbSNP
rs189102191 6 dbSNP
rs759951495 7 dbSNP
rs752402151 13 dbSNP
rs1435520465 17 dbSNP
rs757929818 18 dbSNP
rs200433730 19 dbSNP
rs746910148 23 dbSNP
rs376138263 24 dbSNP
rs910811951 28 dbSNP
rs1235389554 32 dbSNP
rs1271483797 35 dbSNP
rs781026289 37 dbSNP
rs1457069721 38 dbSNP
rs943333288 41 dbSNP
rs1209744032 44 dbSNP
rs1287023462 47 dbSNP
rs370691973 48 dbSNP
rs769635946 49 dbSNP
rs1171846921 50 dbSNP
rs1476561769 51 dbSNP
rs901926834 55 dbSNP
rs891906154 56 dbSNP
rs934789868 60 dbSNP
rs1490835532 67 dbSNP
rs562891073 71 dbSNP
rs1424085550 77 dbSNP
rs1209060091 78 dbSNP
rs1021761430 86 dbSNP
rs1053342603 93 dbSNP
rs543603083 94 dbSNP
rs1216805719 108 dbSNP
rs565848110 109 dbSNP
rs996836244 111 dbSNP
rs542472011 114 dbSNP
rs1329900583 120 dbSNP
rs1392193609 123 dbSNP
rs1392359050 125 dbSNP
rs953837415 127 dbSNP
rs986523689 127 dbSNP
rs1463795945 142 dbSNP
rs1422271517 154 dbSNP
rs1022852113 156 dbSNP
rs767898224 165 dbSNP
rs1481357364 167 dbSNP
rs1375886379 171 dbSNP
rs1197836702 181 dbSNP
rs1419460903 187 dbSNP
rs1252491728 193 dbSNP
rs912300529 196 dbSNP
rs919758147 198 dbSNP
rs961128077 198 dbSNP
rs1343432471 199 dbSNP
rs931212297 204 dbSNP
rs1044696866 210 dbSNP
rs927270990 211 dbSNP
rs1307604004 212 dbSNP
rs1444088185 213 dbSNP
rs1399140019 214 dbSNP
rs1336766659 217 dbSNP
rs1415702641 220 dbSNP
rs1399897905 226 dbSNP
rs905820874 227 dbSNP
rs1470507030 228 dbSNP
rs1280429952 236 dbSNP
rs938662808 237 dbSNP
rs1233168200 243 dbSNP
rs1002533569 248 dbSNP
rs144567368 256 dbSNP
rs575974845 259 dbSNP
rs1440773546 262 dbSNP
rs961400797 263 dbSNP
rs1487396916 279 dbSNP
rs1219076338 289 dbSNP
rs1284283268 290 dbSNP
rs1239915026 295 dbSNP
rs1375632052 304 dbSNP
rs1263577371 306 dbSNP
rs1315324813 313 dbSNP
rs1338178872 313 dbSNP
rs767435661 313 dbSNP
rs1332986091 314 dbSNP
rs1185297750 322 dbSNP
rs1401186567 322 dbSNP
rs993909612 332 dbSNP
rs1010294837 333 dbSNP
rs1156565138 350 dbSNP
rs1418884562 352 dbSNP
rs775804082 353 dbSNP
rs543402212 355 dbSNP
rs1027164247 360 dbSNP
rs760837023 362 dbSNP
rs1421072420 366 dbSNP
rs1029658588 378 dbSNP
rs1261681607 379 dbSNP
rs764009528 379 dbSNP
rs1216269414 393 dbSNP
rs984926849 395 dbSNP
rs1360614403 398 dbSNP
rs1294480132 405 dbSNP
rs1229655087 408 dbSNP
rs1353869362 414 dbSNP
rs1298468781 418 dbSNP
rs1361518501 419 dbSNP
rs3734472 424 dbSNP
rs1342235741 425 dbSNP
rs964964389 430 dbSNP
rs1296274794 432 dbSNP
rs955009373 440 dbSNP
rs1365945955 441 dbSNP
rs1166712211 452 dbSNP
rs558805951 455 dbSNP
rs1342842421 457 dbSNP
rs1246180919 460 dbSNP
rs1008278398 471 dbSNP
rs1478850502 476 dbSNP
rs1278962702 479 dbSNP
rs1193561693 483 dbSNP
rs531103555 484 dbSNP
rs1019305949 499 dbSNP
rs1449471555 511 dbSNP
rs923318474 512 dbSNP
rs1288722667 517 dbSNP
rs766298270 523 dbSNP
rs961075056 525 dbSNP
rs1319384009 526 dbSNP
rs934674550 527 dbSNP
rs1217909155 536 dbSNP
rs1053178083 546 dbSNP
rs34023783 547 dbSNP
rs947240061 551 dbSNP
rs1044288624 555 dbSNP
rs1349456554 556 dbSNP
rs1329795321 557 dbSNP
rs1258169200 560 dbSNP
rs1454044595 562 dbSNP
rs1467434921 562 dbSNP
rs148450060 563 dbSNP
rs1235787256 564 dbSNP
rs552016352 574 dbSNP
rs527873336 578 dbSNP
rs1158853571 582 dbSNP
rs780855259 586 dbSNP
rs1057036590 589 dbSNP
rs1255563266 590 dbSNP
rs913238543 590 dbSNP
rs747690087 592 dbSNP
rs867516787 593 dbSNP
rs994246821 597 dbSNP
rs577037635 601 dbSNP
rs1303334757 602 dbSNP
rs1217195595 604 dbSNP
rs879785151 608 dbSNP
rs1043116667 611 dbSNP
rs1026695643 612 dbSNP
rs546011254 615 dbSNP
rs564603460 617 dbSNP
rs1398416591 620 dbSNP
rs1331281374 627 dbSNP
rs1006336734 628 dbSNP
rs1017756355 634 dbSNP
rs1374729172 639 dbSNP
rs890677360 640 dbSNP
rs1361342376 644 dbSNP
rs368992499 649 dbSNP
rs1414462789 654 dbSNP
rs531651870 656 dbSNP
rs1409144362 657 dbSNP
rs193145058 658 dbSNP
rs1441112578 686 dbSNP
rs976279495 690 dbSNP
rs1177407137 703 dbSNP
rs1483292909 703 dbSNP
rs1257313079 704 dbSNP
rs1207909778 705 dbSNP
rs1231356251 707 dbSNP
rs1311574312 710 dbSNP
rs1257475522 726 dbSNP
rs923529428 727 dbSNP
rs755663432 734 dbSNP
rs896817093 737 dbSNP
rs1345493303 741 dbSNP
rs1374880438 743 dbSNP
rs989260412 746 dbSNP
rs1381415469 750 dbSNP
rs370770310 753 dbSNP
rs1256134826 760 dbSNP
rs1346334587 766 dbSNP
rs993873294 767 dbSNP
rs1026716291 784 dbSNP
rs952521158 785 dbSNP
rs980314510 787 dbSNP
rs1424088101 788 dbSNP
rs568415477 789 dbSNP
rs960190825 790 dbSNP
rs1482858661 792 dbSNP
rs182733607 797 dbSNP
rs1351233798 802 dbSNP
rs777296169 808 dbSNP
rs1323770388 811 dbSNP
rs1379681943 812 dbSNP
rs1310611800 815 dbSNP
rs1466916074 819 dbSNP
rs529222756 822 dbSNP
rs927088677 826 dbSNP
rs1300590683 827 dbSNP
rs1363195625 827 dbSNP
rs1398765763 839 dbSNP
rs1360274070 840 dbSNP
rs1170548666 842 dbSNP
rs1395891110 848 dbSNP
rs946049748 849 dbSNP
rs186918241 850 dbSNP
rs142895749 851 dbSNP
rs748830163 855 dbSNP
rs1487297945 856 dbSNP
rs932100943 858 dbSNP
rs897066075 863 dbSNP
rs1050988024 864 dbSNP
rs1263912003 868 dbSNP
rs1244071232 870 dbSNP
rs539598383 870 dbSNP
rs1318691237 872 dbSNP
rs1280239138 874 dbSNP
rs1217311834 877 dbSNP
rs1340485728 882 dbSNP
rs890635649 888 dbSNP
rs1385267871 889 dbSNP
rs929655352 897 dbSNP
rs1392352082 899 dbSNP
rs557613019 905 dbSNP
rs569722505 907 dbSNP
rs1457149502 916 dbSNP
rs1226476726 918 dbSNP
rs1036612578 919 dbSNP
rs898102488 922 dbSNP
rs1400368056 926 dbSNP
rs993820843 928 dbSNP
rs1026665948 929 dbSNP
rs1422853756 930 dbSNP
rs888170080 938 dbSNP
rs888188655 939 dbSNP
rs1271942634 947 dbSNP
rs1265085244 948 dbSNP
rs1487230402 949 dbSNP
rs1196857164 952 dbSNP
rs765410425 959 dbSNP
rs1211238202 967 dbSNP
rs774979886 969 dbSNP
rs1006617590 979 dbSNP
rs1429493486 988 dbSNP
rs746254314 992 dbSNP
rs1329701471 997 dbSNP
rs1301076344 998 dbSNP
rs1001295214 1005 dbSNP
rs1017995763 1005 dbSNP
rs1439671180 1006 dbSNP
rs1034563934 1009 dbSNP
rs772522138 1010 dbSNP
rs1020142593 1011 dbSNP
rs1173085727 1014 dbSNP
rs375394154 1015 dbSNP
rs997645293 1016 dbSNP
rs1375697291 1023 dbSNP
rs1030582338 1025 dbSNP
rs956525675 1033 dbSNP
rs1421955920 1043 dbSNP
rs978706555 1048 dbSNP
rs988816859 1049 dbSNP
rs1022069847 1054 dbSNP
rs1279498787 1060 dbSNP
rs775781032 1072 dbSNP
rs1343545316 1074 dbSNP
rs1172057689 1076 dbSNP
rs1353900249 1077 dbSNP
rs373271706 1077 dbSNP
rs927369700 1085 dbSNP
rs536701316 1086 dbSNP
rs1334646762 1089 dbSNP
rs1334300050 1101 dbSNP
rs912002460 1105 dbSNP
rs1456501469 1111 dbSNP
rs1295474972 1122 dbSNP
rs554966748 1129 dbSNP
rs1036561683 1130 dbSNP
rs1157071360 1132 dbSNP
rs898050053 1133 dbSNP
rs1296043688 1136 dbSNP
rs1441137199 1144 dbSNP
rs573267657 1159 dbSNP
rs1217717176 1164 dbSNP
rs918502825 1165 dbSNP
rs1284393367 1167 dbSNP
rs571354739 1168 dbSNP
rs929910647 1176 dbSNP
rs1048040508 1177 dbSNP
rs1319367067 1181 dbSNP
rs750607951 1183 dbSNP
rs758386920 1200 dbSNP
rs888087909 1201 dbSNP
rs73016232 1208 dbSNP
rs1001643139 1217 dbSNP
rs1261435996 1221 dbSNP
rs1489489251 1222 dbSNP
rs1039391345 1225 dbSNP
rs1414832711 1225 dbSNP
rs900931049 1232 dbSNP
rs1471851301 1237 dbSNP
rs1417324028 1239 dbSNP
rs1413753869 1243 dbSNP
rs1422129014 1244 dbSNP
rs142870502 1255 dbSNP
rs1446015341 1255 dbSNP
rs997688614 1255 dbSNP
rs1030948228 1256 dbSNP
rs892030741 1257 dbSNP
rs554024639 1259 dbSNP
rs572599952 1262 dbSNP
rs1353631606 1266 dbSNP
rs1014032086 1272 dbSNP
rs1419284989 1273 dbSNP
rs761919664 1278 dbSNP
rs1010883837 1283 dbSNP
rs1342330035 1286 dbSNP
rs1276018955 1292 dbSNP
rs1000123494 1311 dbSNP
rs1021891612 1311 dbSNP
rs1033375030 1312 dbSNP
rs1403868625 1313 dbSNP
rs953402577 1318 dbSNP
rs919777121 1319 dbSNP
rs1479066034 1326 dbSNP
rs766351235 1331 dbSNP
rs1186228367 1333 dbSNP
rs751461114 1334 dbSNP
rs1034431566 1338 dbSNP
rs960145354 1341 dbSNP
rs75508037 1342 dbSNP
rs1271946559 1350 dbSNP
rs918438307 1352 dbSNP
rs1312731339 1356 dbSNP
rs751693866 1361 dbSNP
rs919427731 1362 dbSNP
rs534173539 1363 dbSNP
rs564480157 1364 dbSNP
rs1049310835 1369 dbSNP
rs576483056 1373 dbSNP
rs1356261231 1377 dbSNP
rs543905310 1378 dbSNP
rs1055899701 1385 dbSNP
rs780133054 1389 dbSNP
rs191658026 1391 dbSNP
rs547178376 1392 dbSNP
rs1041495281 1394 dbSNP
rs767243042 1400 dbSNP
rs909808973 1410 dbSNP
rs1415595184 1413 dbSNP
rs1000474544 1416 dbSNP
rs752524523 1417 dbSNP
rs1189875468 1418 dbSNP
rs1452135984 1424 dbSNP
rs1252010033 1431 dbSNP
rs1157045454 1432 dbSNP
rs1458707644 1434 dbSNP
rs1230732650 1437 dbSNP
rs1203702564 1439 dbSNP
rs1032910200 1444 dbSNP
rs1420065359 1447 dbSNP
rs140774869 1448 dbSNP
rs953446531 1451 dbSNP
rs1175023687 1456 dbSNP
rs144620981 1458 dbSNP
rs942328812 1459 dbSNP
rs1467489995 1470 dbSNP
rs1347352909 1472 dbSNP
rs184254063 1482 dbSNP
rs1375493729 1484 dbSNP
rs1039380053 1486 dbSNP
rs1297724333 1492 dbSNP
rs1449351155 1499 dbSNP
rs922345378 1500 dbSNP
rs111558708 1501 dbSNP
rs1377257240 1507 dbSNP
rs11543368 1508 dbSNP
rs1381388222 1515 dbSNP
rs188882238 1526 dbSNP
rs972150586 1527 dbSNP
rs1310832126 1528 dbSNP
rs541298265 1529 dbSNP
rs1176155761 1533 dbSNP
rs891931316 1535 dbSNP
rs1239147515 1550 dbSNP
rs1208375682 1553 dbSNP
rs1264346087 1557 dbSNP
rs1485215066 1559 dbSNP
rs1286535456 1560 dbSNP
rs919376689 1561 dbSNP
rs952244237 1564 dbSNP
rs1010413257 1566 dbSNP
rs147869095 1567 dbSNP
rs1228980531 1568 dbSNP
rs1381895497 1575 dbSNP
rs904816057 1577 dbSNP
rs1440484038 1579 dbSNP
rs1190865436 1580 dbSNP
rs1414774988 1583 dbSNP
rs75157333 1589 dbSNP
rs866374998 1590 dbSNP
rs192190578 1600 dbSNP
rs1176665309 1612 dbSNP
rs960091955 1613 dbSNP
rs1014730537 1614 dbSNP
rs374887737 1615 dbSNP
rs749230417 1617 dbSNP
rs1185684889 1619 dbSNP
rs754980336 1620 dbSNP
rs1400429700 1621 dbSNP
rs367785548 1621 dbSNP
rs1435245151 1623 dbSNP
rs749375962 1630 dbSNP
rs1041445145 1631 dbSNP
rs566749959 1634 dbSNP
rs1222678576 1639 dbSNP
rs1323565530 1642 dbSNP
rs756775816 1648 dbSNP
rs963961192 1650 dbSNP
rs1221357127 1653 dbSNP
rs975033518 1660 dbSNP
rs935835253 1669 dbSNP
rs1398554275 1672 dbSNP
rs1382237508 1673 dbSNP
rs1054708584 1677 dbSNP
rs1458140242 1678 dbSNP
rs1351085244 1685 dbSNP
rs922250260 1686 dbSNP
rs1162210659 1687 dbSNP
rs933686780 1689 dbSNP
rs1460815494 1690 dbSNP
rs1317781483 1697 dbSNP
rs185330620 1698 dbSNP
rs1426517701 1701 dbSNP
rs1197311863 1706 dbSNP
rs1191965694 1707 dbSNP
rs1007892571 1708 dbSNP
rs1018922648 1711 dbSNP
rs397691469 1712 dbSNP
rs60360053 1712 dbSNP
rs1221087124 1714 dbSNP
rs746307215 1717 dbSNP
rs1260554996 1720 dbSNP
rs1478884513 1727 dbSNP
rs1199957997 1729 dbSNP
rs536704752 1732 dbSNP
rs1302460700 1736 dbSNP
rs1422674497 1741 dbSNP
rs1372754482 1751 dbSNP
rs1476776704 1753 dbSNP
rs1460473630 1756 dbSNP
rs1400483172 1758 dbSNP
rs747740031 1766 dbSNP
rs1172755809 1767 dbSNP
rs1423695207 1768 dbSNP
rs1404283883 1771 dbSNP
rs554822106 1771 dbSNP
rs993537146 1772 dbSNP
rs773567276 1773 dbSNP
rs913655355 1776 dbSNP
rs1176559240 1779 dbSNP
rs1026384863 1783 dbSNP
rs1251385371 1788 dbSNP
rs946204153 1801 dbSNP
rs1458265848 1808 dbSNP
rs1240166683 1810 dbSNP
rs554086042 1816 dbSNP
rs1304058421 1823 dbSNP
rs55748809 1824 dbSNP
rs1034284405 1825 dbSNP
rs959613634 1832 dbSNP
rs1340122719 1833 dbSNP
rs1439787329 1843 dbSNP
rs1376960040 1846 dbSNP
rs558350323 1850 dbSNP
rs1360978684 1852 dbSNP
rs190626470 1852 dbSNP
rs1395708043 1853 dbSNP
rs182230045 1853 dbSNP
rs776887850 1855 dbSNP
rs1453486283 1860 dbSNP
rs949702369 1864 dbSNP
rs1014263046 1869 dbSNP
rs114916045 1871 dbSNP
rs1262140304 1873 dbSNP
rs1440592482 1874 dbSNP
rs1382206739 1876 dbSNP
rs1179777581 1877 dbSNP
rs1437701112 1888 dbSNP
rs1487213001 1892 dbSNP
rs1484890129 1894 dbSNP
rs3199558 1903 dbSNP
rs1195714028 1908 dbSNP
rs1242698946 1909 dbSNP
rs761914728 1913 dbSNP
rs200651708 1914 dbSNP
rs1054256025 1915 dbSNP
rs1335026248 1915 dbSNP
rs769799643 1919 dbSNP
rs1405555596 1920 dbSNP
rs1416604265 1921 dbSNP
rs1016749595 1923 dbSNP
rs1312084791 1929 dbSNP
rs943251767 1935 dbSNP
rs1157703318 1938 dbSNP
rs1156821424 1941 dbSNP
rs371183793 1941 dbSNP
rs963865421 1943 dbSNP
rs975273747 1944 dbSNP
rs745479811 1946 dbSNP
rs755128767 1946 dbSNP
rs922531658 1947 dbSNP
rs1447964245 1953 dbSNP
rs1257211907 1954 dbSNP
rs574129762 1955 dbSNP
rs556397474 1957 dbSNP
rs1358587423 1961 dbSNP
rs1488382081 1963 dbSNP
rs1285922856 1966 dbSNP
rs1246956691 1967 dbSNP
rs1285626938 1968 dbSNP
rs77608006 1973 dbSNP
rs1284329843 1977 dbSNP
rs150478439 1984 dbSNP
rs767441498 1985 dbSNP
rs887846367 1992 dbSNP
rs1400387494 1995 dbSNP
rs1328047818 2003 dbSNP
rs1316472725 2004 dbSNP
rs1006723225 2007 dbSNP
rs184413954 2008 dbSNP
rs978906993 2010 dbSNP
rs1167234115 2012 dbSNP
rs1460295880 2013 dbSNP
rs926086550 2014 dbSNP
rs1417794457 2015 dbSNP
rs551353648 2018 dbSNP
rs1185365867 2025 dbSNP
rs1238656225 2026 dbSNP
rs1444770926 2034 dbSNP
rs1476592349 2038 dbSNP
rs937505691 2045 dbSNP
rs1056021733 2049 dbSNP
rs1446107614 2051 dbSNP
rs752479040 2054 dbSNP
rs1215034208 2063 dbSNP
rs1025166422 2064 dbSNP
rs1272465400 2071 dbSNP
rs1177596022 2079 dbSNP
rs966945583 2080 dbSNP
rs1418239562 2083 dbSNP
rs1268235669 2091 dbSNP
rs1160599627 2097 dbSNP
rs1331927636 2111 dbSNP
rs1327944736 2114 dbSNP
rs1393926995 2120 dbSNP
rs1386143408 2133 dbSNP
rs1412179252 2141 dbSNP
rs563532868 2141 dbSNP
rs1414363235 2148 dbSNP
rs760499099 2150 dbSNP
rs950090295 2152 dbSNP
rs145366725 2155 dbSNP
rs11543927 2159 dbSNP
rs1195182552 2162 dbSNP
rs887174915 2179 dbSNP
rs1466737466 2184 dbSNP
rs1251886339 2189 dbSNP
rs1005570984 2192 dbSNP
rs1016989750 2194 dbSNP
rs1374870765 2198 dbSNP
rs990298413 2199 dbSNP
rs188222183 2200 dbSNP
rs1232443851 2202 dbSNP
rs1261048922 2204 dbSNP
rs943166069 2205 dbSNP
rs1444942495 2207 dbSNP
rs996638805 2208 dbSNP
rs759974259 2225 dbSNP
rs879924721 2227 dbSNP
rs376943436 2230 dbSNP
rs1461378090 2231 dbSNP
rs528136836 2241 dbSNP
rs1175100733 2245 dbSNP
rs1197524444 2247 dbSNP
rs1029991222 2249 dbSNP
rs1452226218 2264 dbSNP
rs1235845600 2265 dbSNP
rs1177300417 2268 dbSNP
rs923157088 2268 dbSNP
rs1441087174 2272 dbSNP
rs66520149 2274 dbSNP
rs67738343 2274 dbSNP
rs772235529 2274 dbSNP
rs375778443 2275 dbSNP
rs1203817654 2276 dbSNP
rs1364715297 2278 dbSNP
rs1485869737 2278 dbSNP
rs1477927839 2281 dbSNP
rs1347468520 2286 dbSNP
rs955352540 2293 dbSNP
rs988200307 2297 dbSNP
rs1371363062 2299 dbSNP
rs756828982 2301 dbSNP
rs1171331977 2302 dbSNP
rs1409018181 2305 dbSNP
rs968135787 2309 dbSNP
rs979147896 2310 dbSNP
rs887764849 2317 dbSNP
rs765902614 2331 dbSNP
rs1374492923 2332 dbSNP
rs1159117582 2333 dbSNP
rs1330678378 2340 dbSNP
rs1136284 2341 dbSNP
rs1176531104 2342 dbSNP
rs749935564 2356 dbSNP
rs571126307 2357 dbSNP
rs917480286 2358 dbSNP
rs1259305687 2362 dbSNP
rs3199561 2363 dbSNP
rs1013677540 2364 dbSNP
rs1261524465 2366 dbSNP
rs1230882064 2379 dbSNP
rs1276536654 2381 dbSNP
rs1283697893 2390 dbSNP
rs1047783026 2393 dbSNP
rs1357936013 2401 dbSNP
rs1414560446 2409 dbSNP
rs887088837 2409 dbSNP
rs1289076364 2414 dbSNP
rs1197941312 2418 dbSNP
rs181098822 2420 dbSNP
rs1038379124 2423 dbSNP
rs1342898688 2427 dbSNP
rs1032629682 2429 dbSNP
rs1195987621 2429 dbSNP
rs1419945600 2432 dbSNP
rs899967227 2436 dbSNP
rs762441044 2446 dbSNP
rs1451381268 2447 dbSNP
rs185490085 2450 dbSNP
rs1474749758 2462 dbSNP
rs764106470 2462 dbSNP
rs774099841 2462 dbSNP
rs537639189 2463 dbSNP
rs1188471709 2464 dbSNP
rs910281581 2465 dbSNP
rs1431904078 2469 dbSNP
rs964471577 2472 dbSNP
rs975892328 2474 dbSNP
rs1170619470 2481 dbSNP
rs190350171 2485 dbSNP
rs1463629659 2491 dbSNP
rs1298959512 2493 dbSNP
rs1308427312 2495 dbSNP
rs929176359 2497 dbSNP
rs1385324225 2501 dbSNP
rs1359458578 2502 dbSNP
rs143517935 2504 dbSNP
rs1009461723 2510 dbSNP
rs1021304365 2513 dbSNP
rs541510302 2514 dbSNP
rs1345947376 2515 dbSNP
rs763124870 2522 dbSNP
rs1276270816 2523 dbSNP
rs1033424667 2526 dbSNP
rs1373388930 2533 dbSNP
rs1055144029 2535 dbSNP
rs895210148 2536 dbSNP
rs368761683 2541 dbSNP
rs553349416 2551 dbSNP
rs1264363432 2552 dbSNP
rs1469868974 2555 dbSNP
rs959142971 2558 dbSNP
rs1213582056 2562 dbSNP
rs541010863 2565 dbSNP
rs1253396640 2566 dbSNP
rs1003925695 2578 dbSNP
rs1046514780 2590 dbSNP
rs1211293826 2591 dbSNP
rs1296399468 2593 dbSNP
rs372409002 2596 dbSNP
rs560505238 2597 dbSNP
rs999688520 2605 dbSNP
rs971986664 2612 dbSNP
rs1032989609 2627 dbSNP
rs1490628971 2632 dbSNP
rs1397137543 2636 dbSNP
rs1299599526 2639 dbSNP
rs137939476 2640 dbSNP
rs1372351159 2651 dbSNP
rs983023251 2657 dbSNP
rs958344494 2658 dbSNP
rs908791601 2673 dbSNP
rs1393305134 2674 dbSNP
rs1430373274 2674 dbSNP
rs1011631611 2675 dbSNP
rs878971955 2679 dbSNP
rs545315911 2680 dbSNP
rs1194650142 2681 dbSNP
rs142429743 2682 dbSNP
rs761848760 2685 dbSNP
rs1367971226 2686 dbSNP
rs1349624811 2690 dbSNP
rs1456547884 2693 dbSNP
rs1165728712 2699 dbSNP
rs975840045 2715 dbSNP
rs923052582 2717 dbSNP
rs1842 2722 dbSNP
rs549434432 2728 dbSNP
rs1389655974 2730 dbSNP
rs1369686436 2731 dbSNP
rs1422161850 2731 dbSNP
rs909092570 2743 dbSNP
rs932763234 2744 dbSNP
rs1373884837 2749 dbSNP
rs1173014626 2750 dbSNP
rs1051633239 2753 dbSNP
rs1382714695 2757 dbSNP
rs1365656351 2758 dbSNP
rs991187890 2760 dbSNP
rs890932543 2762 dbSNP
rs916587960 2768 dbSNP
rs542424476 2774 dbSNP
rs1258593175 2783 dbSNP
rs1190526908 2786 dbSNP
rs1319422930 2787 dbSNP
rs1277741348 2792 dbSNP
rs1199583523 2797 dbSNP
rs1350744732 2797 dbSNP
rs949421857 2802 dbSNP
rs1262021282 2803 dbSNP
rs1046462108 2805 dbSNP
rs1009823045 2811 dbSNP
rs1042267584 2813 dbSNP
rs903809484 2814 dbSNP
rs1333727548 2816 dbSNP
rs1401541531 2822 dbSNP
rs1164125437 2829 dbSNP
rs1387178765 2833 dbSNP
rs1000523913 2836 dbSNP
rs1033372628 2838 dbSNP
rs1457119014 2841 dbSNP
rs1419211328 2846 dbSNP
rs1053972467 2849 dbSNP
rs1216423898 2852 dbSNP
rs959047060 2853 dbSNP
rs1487098548 2855 dbSNP
rs1013309088 2857 dbSNP
rs1257322698 2857 dbSNP
rs1007146789 2858 dbSNP
rs1017249316 2871 dbSNP
rs1187649069 2871 dbSNP
rs1025155579 2876 dbSNP
rs971552528 2880 dbSNP
rs373996388 2884 dbSNP
rs900163981 2887 dbSNP
rs560705697 2891 dbSNP
rs528193341 2901 dbSNP
rs1235110419 2919 dbSNP
rs1030071044 2927 dbSNP
rs1422188340 2930 dbSNP
rs1454228752 2935 dbSNP
rs908791142 2939 dbSNP
rs773348278 2940 dbSNP
rs1316224045 2941 dbSNP
rs546342304 2948 dbSNP
rs974027104 2959 dbSNP
rs983665398 2961 dbSNP
rs571252584 2964 dbSNP
rs181819178 2966 dbSNP
rs932656163 2976 dbSNP
rs1051153379 2983 dbSNP
rs1413480477 2984 dbSNP
rs1419343545 2997 dbSNP
rs552098531 3007 dbSNP
rs14759 3011 dbSNP
rs1186357753 3015 dbSNP
rs1464039684 3034 dbSNP
rs41267047 3035 dbSNP
rs1042645478 3036 dbSNP
rs1467100046 3042 dbSNP
rs903758620 3053 dbSNP
rs1000806537 3062 dbSNP
rs113987879 3064 dbSNP
rs1268621396 3065 dbSNP
rs1228003451 3066 dbSNP
rs1371782687 3069 dbSNP
rs1328045762 3075 dbSNP
rs1055062911 3076 dbSNP
rs982107236 3078 dbSNP
rs1329884642 3080 dbSNP
rs1411997558 3083 dbSNP
rs775451690 3086 dbSNP
rs1315296098 3089 dbSNP
rs1013674711 3091 dbSNP
rs1166296713 3096 dbSNP
rs760416006 3098 dbSNP
rs192211409 3113 dbSNP
rs1237519982 3116 dbSNP
rs8036 3118 dbSNP
rs1246047530 3119 dbSNP
rs1205201816 3120 dbSNP
rs1439313611 3122 dbSNP
rs144614116 3129 dbSNP
rs893983783 3133 dbSNP
rs1348901675 3134 dbSNP
rs942899241 3137 dbSNP
rs1255966808 3138 dbSNP
rs1280637576 3141 dbSNP
rs1428641339 3141 dbSNP
rs1445053455 3141 dbSNP
rs530154982 3141 dbSNP
rs78044784 3142 dbSNP
rs1015740319 3143 dbSNP
rs997153604 3144 dbSNP
rs1205572949 3151 dbSNP
rs578006492 3152 dbSNP
rs1439268176 3159 dbSNP
rs1471139233 3164 dbSNP
rs1181209452 3167 dbSNP
rs1486085551 3183 dbSNP
rs1177027357 3187 dbSNP
rs1282736047 3188 dbSNP
rs1409858467 3190 dbSNP
rs1208356521 3191 dbSNP
rs1285081641 3197 dbSNP
rs1311658315 3197 dbSNP
rs1225925351 3205 dbSNP
rs1371829067 3215 dbSNP
rs183935134 3222 dbSNP
rs761611781 3235 dbSNP
rs1357418570 3236 dbSNP
rs974266991 3238 dbSNP
rs1357817961 3242 dbSNP
rs1314305788 3243 dbSNP
rs1445408134 3243 dbSNP
rs1028539313 3244 dbSNP
rs557285008 3245 dbSNP
rs1398965144 3249 dbSNP
rs1444061582 3255 dbSNP
rs1409673342 3256 dbSNP
rs954032492 3257 dbSNP
rs1280982071 3259 dbSNP
rs575182177 3260 dbSNP
rs1483059703 3262 dbSNP
rs1242716065 3263 dbSNP
rs1224741650 3265 dbSNP
rs1301030293 3266 dbSNP
rs1321946263 3269 dbSNP
rs1268034119 3271 dbSNP
rs1234489131 3274 dbSNP
rs1337362551 3274 dbSNP
rs1311065955 3285 dbSNP
rs375982260 3285 dbSNP
rs991099545 3302 dbSNP
rs1263780093 3303 dbSNP
rs1457408554 3306 dbSNP
rs750266525 3310 dbSNP
rs1202656548 3314 dbSNP
rs1234878934 3319 dbSNP
rs1288877004 3319 dbSNP
rs1023499957 3330 dbSNP
rs1385879473 3332 dbSNP
rs546415373 3340 dbSNP
rs1461933995 3360 dbSNP
rs1419695056 3366 dbSNP
rs370670348 3368 dbSNP
rs1480830370 3370 dbSNP
rs970625845 3371 dbSNP
rs186672191 3372 dbSNP
rs1420486902 3373 dbSNP
rs923960160 3377 dbSNP
rs956975084 3382 dbSNP
rs1247533035 3387 dbSNP
rs1214818979 3392 dbSNP
rs1481354620 3402 dbSNP
rs989564209 3402 dbSNP
rs915332645 3403 dbSNP
rs560762565 3405 dbSNP
rs1244528539 3406 dbSNP
rs1177101070 3407 dbSNP
rs942877185 3413 dbSNP
rs1362362299 3417 dbSNP
rs945479854 3417 dbSNP
rs1039905164 3419 dbSNP
rs1396600650 3421 dbSNP
rs977899565 3428 dbSNP
rs922812257 3430 dbSNP
rs1354940758 3436 dbSNP
rs1172757262 3440 dbSNP
rs1435310020 3446 dbSNP
rs1447920721 3447 dbSNP
rs1293259397 3455 dbSNP
rs760957277 3457 dbSNP
rs925082119 3457 dbSNP
rs1344045339 3466 dbSNP
rs1455915289 3467 dbSNP
rs749992652 3475 dbSNP
rs1055011547 3476 dbSNP
rs1051401275 3479 dbSNP
rs895104840 3484 dbSNP
rs138521207 3485 dbSNP
rs1046517168 3496 dbSNP
rs1273198349 3503 dbSNP
rs886172588 3505 dbSNP
rs1275225984 3508 dbSNP
rs1332377320 3516 dbSNP
rs1299071930 3520 dbSNP
rs1386175802 3523 dbSNP
rs1373734122 3526 dbSNP
rs1308232189 3527 dbSNP
rs1004980442 3528 dbSNP
rs1005017959 3539 dbSNP
rs1037453826 3541 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uacaUCCGGAAAUCUAGUGAa 5'
              |||:    :||||||| 
Target 5' --caAGGUGGGAGGAUCACUu 3'
1 - 19
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000367090.3 | 3UTR | CAAGGUGGGAGGAUCACUUGAGCCCAGGAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BRCA -0.997 0.02 -1.000 0.5 3 Click to see details
BLCA 0.969 0.08 1.000 0.5 3 Click to see details
UCEC 0.931 0.12 1.000 0.5 3 Click to see details
HNSC 0.337 0.23 0.286 0.27 7 Click to see details
HNSC 0.337 0.23 0.286 0.27 7 Click to see details
HNSC 0.337 0.23 0.286 0.27 7 Click to see details
HNSC 0.337 0.23 0.286 0.27 7 Click to see details
HNSC 0.337 0.23 0.286 0.27 7 Click to see details
109 hsa-miR-1245a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT006574 BRCA2 BRCA2, DNA repair associated 2 1
MIRT055432 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT063879 RASSF8 Ras association domain family member 8 2 6
MIRT077025 WIPF2 WAS/WASL interacting protein family member 2 2 2
MIRT095775 GRPEL2 GrpE like 2, mitochondrial 2 10
MIRT099172 MAP3K4 mitogen-activated protein kinase kinase kinase 4 2 2
MIRT175616 OCRL OCRL, inositol polyphosphate-5-phosphatase 2 2
MIRT456518 LYPLAL1 lysophospholipase like 1 2 2
MIRT464457 UGCG UDP-glucose ceramide glucosyltransferase 2 2
MIRT465747 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT468257 SFXN4 sideroflexin 4 2 2
MIRT469216 RICTOR RPTOR independent companion of MTOR complex 2 2 2
MIRT472045 NPAT nuclear protein, coactivator of histone transcription 2 2
MIRT481795 APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 2 2
MIRT500154 CREBBP CREB binding protein 2 2
MIRT506514 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 4
MIRT506915 KBTBD8 kelch repeat and BTB domain containing 8 2 6
MIRT513901 GRB10 growth factor receptor bound protein 10 2 6
MIRT519128 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 2 2
MIRT528121 FOXH1 forkhead box H1 2 2
MIRT528942 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT540580 CEP89 centrosomal protein 89 2 2
MIRT545858 ZNF264 zinc finger protein 264 2 4
MIRT547147 PGM3 phosphoglucomutase 3 2 2
MIRT547434 MED4 mediator complex subunit 4 2 2
MIRT554650 ROBO1 roundabout guidance receptor 1 2 2
MIRT558524 CSRNP3 cysteine and serine rich nuclear protein 3 2 2
MIRT559762 ABHD5 abhydrolase domain containing 5 2 2
MIRT560438 GOLGA7B golgin A7 family member B 2 2
MIRT561974 LRRC59 leucine rich repeat containing 59 2 2
MIRT562442 DDIT4 DNA damage inducible transcript 4 2 2
MIRT563489 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT568265 BMP2K BMP2 inducible kinase 2 2
MIRT572522 KIAA0232 KIAA0232 2 2
MIRT612801 LSM14A LSM14A, mRNA processing body assembly factor 2 2
MIRT621533 ZNF507 zinc finger protein 507 2 2
MIRT625205 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT625615 ZNF84 zinc finger protein 84 2 2
MIRT629215 C12orf66 chromosome 12 open reading frame 66 2 2
MIRT629509 AS3MT arsenite methyltransferase 2 2
MIRT629769 STK25 serine/threonine kinase 25 2 2
MIRT630908 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT632508 RAB13 RAB13, member RAS oncogene family 2 2
MIRT636871 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT637106 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT637332 FAM9B family with sequence similarity 9 member B 2 2
MIRT637553 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT637639 ZNF431 zinc finger protein 431 2 2
MIRT637836 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT638326 RNF11 ring finger protein 11 2 2
MIRT638393 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT642450 CLUAP1 clusterin associated protein 1 2 2
MIRT642616 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT643133 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT644324 NFKBID NFKB inhibitor delta 2 2
MIRT645150 DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 2
MIRT645673 ADK adenosine kinase 2 2
MIRT646091 MGST3 microsomal glutathione S-transferase 3 2 2
MIRT646858 SLC35E4 solute carrier family 35 member E4 2 2
MIRT650153 ZNF426 zinc finger protein 426 2 2
MIRT652483 TMEM181 transmembrane protein 181 2 2
MIRT653790 SIRPA signal regulatory protein alpha 2 2
MIRT655526 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT657077 JPH2 junctophilin 2 2 2
MIRT657322 HOOK3 hook microtubule tethering protein 3 2 2
MIRT662036 FUT2 fucosyltransferase 2 2 2
MIRT662322 ADM2 adrenomedullin 2 2 2
MIRT663211 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT663559 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663937 ZNF554 zinc finger protein 554 2 2
MIRT664689 EIF2B2 eukaryotic translation initiation factor 2B subunit beta 2 2
MIRT664709 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT665291 ZFP14 ZFP14 zinc finger protein 2 2
MIRT665572 TXNL1 thioredoxin like 1 2 2
MIRT667068 PAOX polyamine oxidase 2 2
MIRT667304 MYO5A myosin VA 2 2
MIRT667442 METTL14 methyltransferase like 14 2 2
MIRT668048 GTPBP10 GTP binding protein 10 2 2
MIRT669604 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT671088 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT674361 SLC35E3 solute carrier family 35 member E3 2 2
MIRT674962 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT676394 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676819 AGMAT agmatinase 2 2
MIRT676891 ENSA endosulfine alpha 2 2
MIRT677059 ZNF34 zinc finger protein 34 2 2
MIRT678424 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678735 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT678930 XPOT exportin for tRNA 2 2
MIRT678954 MYADM myeloid associated differentiation marker 2 2
MIRT679228 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679765 TLR6 toll like receptor 6 2 2
MIRT681992 HRH4 histamine receptor H4 2 2
MIRT687405 NSUN4 NOP2/Sun RNA methyltransferase family member 4 2 2
MIRT694570 RBMXL1 RNA binding motif protein, X-linked like 1 2 2
MIRT698449 TM4SF1 transmembrane 4 L six family member 1 2 2
MIRT706406 HAS2 hyaluronan synthase 2 2 2
MIRT706582 ZNF432 zinc finger protein 432 2 2
MIRT706838 VHLL VHL like 2 2
MIRT706909 DVL3 dishevelled segment polarity protein 3 2 2
MIRT707052 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT708583 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT708988 CABP4 calcium binding protein 4 2 2
MIRT713041 ADRA2B adrenoceptor alpha 2B 2 2
MIRT713731 SUCO SUN domain containing ossification factor 2 2
MIRT714968 RAB21 RAB21, member RAS oncogene family 2 2
MIRT717485 PDE4DIP phosphodiesterase 4D interacting protein 2 2
MIRT722826 KLK2 kallikrein related peptidase 2 2 2
MIRT723305 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1245a Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (M14) (500nM)
hsa-miR-1245a Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (M14) (500nM)
hsa-miR-1245a Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (M14) (1uM)
hsa-miR-1245a Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (M14) (1uM)
hsa-miR-1245a Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-1245a Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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