pre-miRNA Information
pre-miRNA hsa-mir-23a   
Genomic Coordinates chr19: 13836587 - 13836659
Synonyms MIRN23A, hsa-mir-23a, miRNA23A, MIR23A
Description Homo sapiens miR-23a stem-loop
Comment This miRNA was previously named miR-23 . This finding was later retracted after the discovery that the regulated gene was human homolog of ES1 (HES1), whose function is unknown.
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-23a-5p
Sequence 9| GGGGUUCCUGGGGAUGGGAUUU |30
Evidence Experimental
Experiments Cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs748509260 12 dbSNP
rs1205403719 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TIMELESS   
Synonyms TIM, TIM1, hTIM
Description timeless circadian clock
Transcript NM_003920   
Expression
Putative miRNA Targets on TIMELESS
3'UTR of TIMELESS
(miRNA target sites are highlighted)
>TIMELESS|NM_003920|3'UTR
   1 AGAGCTAAGAAGCCTAGGGGTAGAGATAGACACGTTTTTAGATGGTGCATTCAAGTCAGAGTTGGAAGGGTCATACAGGA
  81 CCCAGAAGCTCCTCTTACTGGACAGAGCAGTAGAATCCCAGGCTCTTTCACGGATTTAGGCTGAGAAACTTCAGCAGCAG
 161 TATTGGACTTCTCTGCTGTCAGTCTTTGTTTCTCCCAGTTTTTATCGGTATGCCCCAGCAGCTCTCTGGAGATTTAGTTC
 241 TCTTCTTCTAGGAACCATTTCTTTTGGTTATTGGAGCTCCTTAGCAAATAAGAGGAGTGAGTGAAATAGAGAAAGCACCC
 321 CGGACCCCTTTTATTGGTCTGTTCCTTTGGCTTTCTCTTGGAGGTGGGTCGCAGCACCAGATGGGGAGCTTTATGACATG
 401 ACAGGCGGGAGTTTTGTACCACTTTTAGAAGATACCAGATGCCTCTGTCCTCATTTTGTTTCCTATGATCATCCTCTAGA
 481 TACCAGATAGAGGCCCATTCCTGCATTTGAGATAGGGTTGGAATATAGTACTCTAGATGATGAATGTGTTTGCTTTGTGT
 561 TTGGTATTAAACATGTAAGATTAGAAGTTCTCATCTCAGTCTGACTTGGCGATATGTCTAAGTTCCCCAGCCCTTCCCCT
 641 GCTGTGCTCTTGAAAGAAGAACTTAACAATTTTAGGGTAAAAAGAGACCAACAGACCGGCACAGTGGCTCAAACCTGTTG
 721 TCCTAGCACTTTGGGAGGCTGAGGCGGGCGGATCACCTGAGGTCAGGAGTTTGAGACCGGCCTGGACAATATGGCGAAAT
 801 CCCATCTCCACTAAAAATACAAAAATTAGCCGGCCATGGTGGCATGCGCCTGTAATCCCAGCCACTCGGGTGGCTGAGGC
 881 AGGAGAATTGCCTGAACCCAGGAGGCAGAGGTTGCAGTGAGCTAAGGTCACGCCAGTGCATATGCCTGGGCGACAGAGCA
 961 AGACTCTGTCTCAAAAAAAAAGAAAAAAAAAAAAGACCAACAACCTTCCCTTTTCTTCCGCTTTCCCTACAGAAGACACA
1041 GAAAAGCATTTTTGCCTCTAGATCCTTTTGTCTAGGGTAAATTCTTAGGGTGACAAGAGTATGCGGCAGGAAGAAGGAGG
1121 AGCCATAAAGGAAGAGAAGCCAGCTTGTTGGCATGGGGCATAGAAAAGGACAAAATCTAGGCATGAAAAGGATGGATAAA
1201 TACTGCAAATATTATGTTCTTACCCATTCTTGGAAACGTCAGCTTTCTTGCTTCCTGTGCTTCCAGCCGAGGTAGGGCAA
1281 AGGTGAGATTGAGAAAATAGCCATTCAGCTCAGGAAGGCTTCTAAGTAAAGGATGGATTTGGAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuuAGGGUAG-GGGUCCUUGGgg 5'
             ||:| || :|:|||||||  
Target 5' agtTCTCTTCTTCTAGGAACCat 3'
236 - 258 147.00 -19.10
2
miRNA  3' uuuaggGUAGGGGUCCUUGGGg 5'
                || |||| ||| ||| 
Target 5' agaaagCA-CCCC-GGACCCCt 3'
310 - 329 122.00 -20.90
3
miRNA  3' uuuaggguaggggucCUUGGGg 5'
                         |||||| 
Target 5' gcaggagaattgcctGAACCCa 3'
879 - 900 120.00 -13.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30466858 14 COSMIC
COSN30106249 17 COSMIC
COSN31544864 33 COSMIC
COSN31491095 57 COSMIC
COSN30454661 69 COSMIC
COSN30501280 89 COSMIC
COSN31524524 110 COSMIC
COSN30125194 180 COSMIC
COSN7617211 236 COSMIC
COSN7374825 892 COSMIC
COSN29781269 964 COSMIC
COSN16897190 982 COSMIC
COSN27291589 982 COSMIC
COSN17078625 1109 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs900863587 4 dbSNP
rs1216273816 15 dbSNP
rs1410762205 15 dbSNP
rs371386009 16 dbSNP
rs1324278363 17 dbSNP
rs756034589 20 dbSNP
rs1245302091 22 dbSNP
rs1225009155 25 dbSNP
rs750325047 29 dbSNP
rs767495664 33 dbSNP
rs368534575 34 dbSNP
rs774512916 35 dbSNP
rs1033283800 40 dbSNP
rs764198562 42 dbSNP
rs1480423463 45 dbSNP
rs1366652868 47 dbSNP
rs374609968 49 dbSNP
rs748525280 52 dbSNP
rs571109082 61 dbSNP
rs1366013376 62 dbSNP
rs552813438 70 dbSNP
rs1288600725 75 dbSNP
rs1359571246 81 dbSNP
rs1397746645 83 dbSNP
rs1304475294 84 dbSNP
rs947245823 91 dbSNP
rs1385685990 101 dbSNP
rs1299145603 102 dbSNP
rs1338901803 106 dbSNP
rs913168793 121 dbSNP
rs779559684 127 dbSNP
rs1239572733 129 dbSNP
rs531169580 131 dbSNP
rs570256243 132 dbSNP
rs1224975708 143 dbSNP
rs935330759 177 dbSNP
rs182861281 191 dbSNP
rs997525343 192 dbSNP
rs1189476566 202 dbSNP
rs1253306824 204 dbSNP
rs530192128 206 dbSNP
rs1174086613 207 dbSNP
rs1416198578 208 dbSNP
rs559501196 213 dbSNP
rs969886488 214 dbSNP
rs111796967 215 dbSNP
rs369298898 216 dbSNP
rs35873749 217 dbSNP
rs940793761 219 dbSNP
rs984273540 226 dbSNP
rs1167256596 236 dbSNP
rs1365770288 242 dbSNP
rs1476750713 248 dbSNP
rs1435135665 250 dbSNP
rs1425523033 253 dbSNP
rs1291276219 255 dbSNP
rs1049706933 257 dbSNP
rs1391864906 268 dbSNP
rs937499617 271 dbSNP
rs1194027253 274 dbSNP
rs1247842256 284 dbSNP
rs1292783110 289 dbSNP
rs952937333 294 dbSNP
rs1253148013 298 dbSNP
rs1481270821 301 dbSNP
rs1485157432 307 dbSNP
rs1236835051 308 dbSNP
rs981627513 311 dbSNP
rs749871496 318 dbSNP
rs994850406 321 dbSNP
rs767016973 322 dbSNP
rs988419402 324 dbSNP
rs1355750359 336 dbSNP
rs1462004664 342 dbSNP
rs957378953 348 dbSNP
rs1442469404 350 dbSNP
rs753601775 359 dbSNP
rs1032733801 360 dbSNP
rs1218550798 363 dbSNP
rs985716558 370 dbSNP
rs953864810 371 dbSNP
rs190035995 372 dbSNP
rs1297882785 380 dbSNP
rs1308177900 381 dbSNP
rs564002185 383 dbSNP
rs1019731153 392 dbSNP
rs1029494300 394 dbSNP
rs1256722042 400 dbSNP
rs185672752 406 dbSNP
rs575143243 407 dbSNP
rs889540813 408 dbSNP
rs1355087465 432 dbSNP
rs1014961350 465 dbSNP
rs1301295204 470 dbSNP
rs1477863342 471 dbSNP
rs374606825 473 dbSNP
rs1421459000 476 dbSNP
rs143122381 478 dbSNP
rs868033121 481 dbSNP
rs756784811 484 dbSNP
rs891660830 488 dbSNP
rs751444857 493 dbSNP
rs1053023763 495 dbSNP
rs181386743 497 dbSNP
rs17118576 504 dbSNP
rs1046835077 510 dbSNP
rs1218107538 512 dbSNP
rs948139460 514 dbSNP
rs916677916 516 dbSNP
rs950328454 520 dbSNP
rs1278475667 527 dbSNP
rs984199957 535 dbSNP
rs764081608 536 dbSNP
rs952863794 538 dbSNP
rs369804790 539 dbSNP
rs973001267 548 dbSNP
rs1488403521 551 dbSNP
rs1192391106 554 dbSNP
rs1472876263 557 dbSNP
rs766162239 561 dbSNP
rs534557137 567 dbSNP
rs762719593 575 dbSNP
rs139866328 577 dbSNP
rs1196141569 592 dbSNP
rs925697736 593 dbSNP
rs1006985012 595 dbSNP
rs1412552889 601 dbSNP
rs190560557 603 dbSNP
rs66523847 605 dbSNP
rs1021368925 609 dbSNP
rs1011351722 610 dbSNP
rs1347490173 611 dbSNP
rs891629732 614 dbSNP
rs1053372623 615 dbSNP
rs1343415259 624 dbSNP
rs145968503 633 dbSNP
rs961295702 634 dbSNP
rs1354025970 636 dbSNP
rs1380074375 644 dbSNP
rs1215419446 649 dbSNP
rs907134605 650 dbSNP
rs1015494728 654 dbSNP
rs1046364821 658 dbSNP
rs1005292680 661 dbSNP
rs948037355 663 dbSNP
rs916604269 665 dbSNP
rs1048460818 669 dbSNP
rs377117432 676 dbSNP
rs548727503 684 dbSNP
rs1028064004 697 dbSNP
rs759762972 698 dbSNP
rs1347893536 702 dbSNP
rs1418810329 704 dbSNP
rs1157113855 706 dbSNP
rs1367607826 712 dbSNP
rs905940269 714 dbSNP
rs1322952992 719 dbSNP
rs918720082 723 dbSNP
rs1406739926 725 dbSNP
rs1444956484 727 dbSNP
rs1176266662 728 dbSNP
rs1310518550 733 dbSNP
rs1440975618 739 dbSNP
rs1238383551 745 dbSNP
rs113886889 746 dbSNP
rs1961586 749 dbSNP
rs566119699 750 dbSNP
rs1209975446 756 dbSNP
rs1288524242 760 dbSNP
rs772790827 778 dbSNP
rs965633369 779 dbSNP
rs1238670206 783 dbSNP
rs1438855912 785 dbSNP
rs547486334 791 dbSNP
rs1387375859 792 dbSNP
rs1473244263 795 dbSNP
rs771625008 796 dbSNP
rs985757169 799 dbSNP
rs953672082 805 dbSNP
rs1322573909 826 dbSNP
rs1021337596 831 dbSNP
rs989866116 832 dbSNP
rs1238104220 838 dbSNP
rs955779007 845 dbSNP
rs771076564 847 dbSNP
rs1003133525 848 dbSNP
rs907064672 849 dbSNP
rs1285901706 854 dbSNP
rs1453385032 855 dbSNP
rs1382168808 859 dbSNP
rs1334940997 863 dbSNP
rs569322241 868 dbSNP
rs1365329239 871 dbSNP
rs1295104675 876 dbSNP
rs564934337 883 dbSNP
rs932417707 893 dbSNP
rs545721261 896 dbSNP
rs1457249779 897 dbSNP
rs976597732 902 dbSNP
rs1244710598 904 dbSNP
rs549458108 932 dbSNP
rs1421063127 935 dbSNP
rs939794898 938 dbSNP
rs908460564 945 dbSNP
rs1476437031 954 dbSNP
rs773851923 956 dbSNP
rs1171403050 962 dbSNP
rs867824201 963 dbSNP
rs984088216 968 dbSNP
rs1433146831 972 dbSNP
rs1265822100 980 dbSNP
rs117594650 982 dbSNP
rs572578609 982 dbSNP
rs931357286 983 dbSNP
rs897248783 985 dbSNP
rs1333102270 986 dbSNP
rs1338276730 989 dbSNP
rs1219995677 990 dbSNP
rs1278267743 991 dbSNP
rs1317259395 993 dbSNP
rs76812933 994 dbSNP
rs1027681665 995 dbSNP
rs952738818 995 dbSNP
rs1483474132 997 dbSNP
rs187062230 999 dbSNP
rs1199601895 1008 dbSNP
rs1037172013 1011 dbSNP
rs944188581 1014 dbSNP
rs1194560209 1016 dbSNP
rs772763588 1019 dbSNP
rs986111750 1020 dbSNP
rs932898895 1026 dbSNP
rs1262820282 1027 dbSNP
rs1024321622 1029 dbSNP
rs1214713151 1030 dbSNP
rs529326549 1039 dbSNP
rs1286837984 1042 dbSNP
rs1399694597 1048 dbSNP
rs1401425635 1049 dbSNP
rs1298328475 1050 dbSNP
rs1232576062 1054 dbSNP
rs72480408 1056 dbSNP
rs891931066 1060 dbSNP
rs989834766 1061 dbSNP
rs955748186 1062 dbSNP
rs1032254182 1071 dbSNP
rs1031826312 1082 dbSNP
rs541959878 1084 dbSNP
rs868598614 1085 dbSNP
rs1000475527 1095 dbSNP
rs1356174616 1097 dbSNP
rs111452511 1103 dbSNP
rs113750807 1105 dbSNP
rs904758510 1105 dbSNP
rs34287792 1111 dbSNP
rs971636263 1114 dbSNP
rs1192934144 1117 dbSNP
rs553071747 1120 dbSNP
rs900924664 1123 dbSNP
rs1296052460 1129 dbSNP
rs1040780240 1131 dbSNP
rs779376351 1132 dbSNP
rs1022831621 1138 dbSNP
rs1012753029 1139 dbSNP
rs1417339893 1147 dbSNP
rs984345882 1153 dbSNP
rs1368302006 1163 dbSNP
rs181976982 1171 dbSNP
rs1464082959 1177 dbSNP
rs1026918176 1181 dbSNP
rs1378874460 1185 dbSNP
rs926506007 1186 dbSNP
rs1285595081 1192 dbSNP
rs1351765379 1194 dbSNP
rs1223950337 1200 dbSNP
rs995478852 1205 dbSNP
rs897181385 1208 dbSNP
rs745479303 1212 dbSNP
rs35403917 1219 dbSNP
rs1208600181 1224 dbSNP
rs944173340 1235 dbSNP
rs576938953 1237 dbSNP
rs558569753 1238 dbSNP
rs1178356497 1243 dbSNP
rs1049926322 1265 dbSNP
rs1423374387 1268 dbSNP
rs537754390 1269 dbSNP
rs190682933 1276 dbSNP
rs554869602 1278 dbSNP
rs1166343177 1283 dbSNP
rs914842144 1285 dbSNP
rs756693489 1289 dbSNP
rs751124090 1303 dbSNP
rs924340519 1310 dbSNP
rs1489414184 1319 dbSNP
rs536815136 1322 dbSNP
rs981591692 1334 dbSNP
rs971177968 1343 dbSNP
rs1447318910 1346 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000229201.4 | 3UTR | CCAAGAGGCAGAGGUUGCAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE15076 Monocyte-derived dendritic cells -0.897 5.2e-4 -0.700 1.8e-2 9 Click to see details
GSE38226 Liver fibrosis -0.572 3.4e-3 -0.676 3.8e-4 21 Click to see details
GSE28260 Renal cortex and medulla 0.479 4.9e-2 0.566 2.2e-2 13 Click to see details
GSE21032 Prostate cancer 0.125 1.3e-1 0.138 1.1e-1 83 Click to see details
GSE17498 Multiple myeloma -0.139 2.0e-1 -0.113 2.4e-1 40 Click to see details
GSE28544 Breast cancer -0.151 2.4e-1 0.055 4.0e-1 24 Click to see details
GSE19783 ER+ ER+ breast cancer 0.147 2.7e-1 0.170 2.4e-1 20 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.126 2.7e-1 0.231 1.3e-1 25 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.095 3.3e-1 0.035 4.3e-1 25 Click to see details
GSE21687 Ependynoma primary tumors 0.053 3.4e-1 0.169 9.1e-2 64 Click to see details
GSE26953 Aortic valvular endothelial cells -0.085 3.5e-1 -0.090 3.4e-1 24 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.07 3.8e-1 -0.250 1.4e-1 20 Click to see details
GSE19783 ER- ER- breast cancer 0.033 3.9e-1 0.048 3.4e-1 79 Click to see details
GSE19350 CNS germ cell tumors 0.091 3.9e-1 0.198 2.7e-1 12 Click to see details
GSE19536 Breast cancer -0.014 4.5e-1 -0.020 4.2e-1 100 Click to see details
GSE32688 Pancreatic cancer -0.014 4.7e-1 -0.032 4.3e-1 32 Click to see details
GSE42095 Differentiated embryonic stem cells -0.006 4.9e-1 -0.274 1.0e-1 23 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
STAD 0.498 0 0.467 0.01 28 Click to see details
HNSC 0.394 0.01 0.429 0 40 Click to see details
LIHC -0.334 0.02 -0.401 0.01 38 Click to see details
UCEC -0.406 0.04 -0.421 0.04 19 Click to see details
COAD 0.619 0.05 0.452 0.13 8 Click to see details
LUSC -0.241 0.07 -0.205 0.11 38 Click to see details
KIRP 0.251 0.08 0.166 0.18 32 Click to see details
PRAD 0.28 0.12 0.214 0.19 19 Click to see details
THCA 0.135 0.15 0.048 0.36 59 Click to see details
CHOL -0.358 0.19 -0.500 0.1 8 Click to see details
BRCA 0.04 0.36 0.078 0.25 78 Click to see details
PAAD -0.256 0.37 -0.400 0.3 4 Click to see details
KICH -0.071 0.38 -0.027 0.46 20 Click to see details
LUAD 0.108 0.39 0.017 0.48 9 Click to see details
ESCA -0.088 0.4 -0.127 0.35 11 Click to see details
BLCA -0.052 0.42 -0.162 0.27 16 Click to see details
PCPG -0.203 0.43 -0.500 0.33 3 Click to see details
KIRC 0.003 0.49 0.015 0.45 62 Click to see details
KIRC 0.003 0.49 0.015 0.45 62 Click to see details
CESC -1 0.5 -1.000 0.5 3 Click to see details
CESC -1 0.5 -1.000 0.5 3 Click to see details
131 hsa-miR-23a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT038958 ATF1 activating transcription factor 1 1 1
MIRT057661 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT395438 NFKBID NFKB inhibitor delta 2 2
MIRT463884 WNT7B Wnt family member 7B 2 4
MIRT475804 HDGF heparin binding growth factor 2 2
MIRT478528 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT479278 CHD4 chromodomain helicase DNA binding protein 4 2 6
MIRT492564 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT500353 ZNF385A zinc finger protein 385A 2 2
MIRT509788 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT511566 HIST3H2BB histone cluster 3 H2B family member b 2 4
MIRT525450 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539558 CNKSR3 CNKSR family member 3 2 4
MIRT540034 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540225 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT540242 RGS17 regulator of G protein signaling 17 2 2
MIRT540871 ZBTB24 zinc finger and BTB domain containing 24 2 2
MIRT559065 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT560685 HIST1H1T histone cluster 1 H1 family member t 2 2
MIRT565593 SLC35G1 solute carrier family 35 member G1 2 2
MIRT565642 SKI SKI proto-oncogene 2 2
MIRT576747 Tmem127 transmembrane protein 127 2 2
MIRT607712 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT615682 NAV2 neuron navigator 2 2 2
MIRT617337 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT617378 FAM227A family with sequence similarity 227 member A 2 2
MIRT620855 SERPING1 serpin family G member 1 2 2
MIRT625112 SLC1A5 solute carrier family 1 member 5 2 2
MIRT625124 NUP93 nucleoporin 93 2 2
MIRT625898 LINC00632 long intergenic non-protein coding RNA 632 2 2
MIRT626016 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626481 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT626573 MED7 mediator complex subunit 7 2 2
MIRT626814 PRR11 proline rich 11 2 2
MIRT628136 HM13 histocompatibility minor 13 2 2
MIRT630771 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT633133 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT636950 APTX aprataxin 2 2
MIRT637802 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT638622 GSR glutathione-disulfide reductase 2 4
MIRT642196 SMAGP small cell adhesion glycoprotein 2 2
MIRT645121 HES2 hes family bHLH transcription factor 2 2 2
MIRT645344 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT646564 ALDH5A1 aldehyde dehydrogenase 5 family member A1 2 2
MIRT649243 TRIM65 tripartite motif containing 65 2 2
MIRT651810 USP49 ubiquitin specific peptidase 49 2 2
MIRT652137 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT652668 TIMELESS timeless circadian clock 2 2
MIRT655894 NEK9 NIMA related kinase 9 2 2
MIRT656564 LYRM7 LYR motif containing 7 2 2
MIRT657194 IKZF3 IKAROS family zinc finger 3 2 2
MIRT657907 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT660207 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660619 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT660826 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT660986 ABHD2 abhydrolase domain containing 2 2 2
MIRT662232 PGBD4 piggyBac transposable element derived 4 2 2
MIRT663691 ZNF347 zinc finger protein 347 2 2
MIRT665577 TUBD1 tubulin delta 1 2 2
MIRT666149 SP2 Sp2 transcription factor 2 2
MIRT666310 SLC22A3 solute carrier family 22 member 3 2 2
MIRT666457 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT667716 KIAA1468 KIAA1468 2 2
MIRT668329 FKBP5 FK506 binding protein 5 2 2
MIRT668370 FBXO47 F-box protein 47 2 2
MIRT669304 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT669538 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT671681 ADK adenosine kinase 2 2
MIRT672177 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT673604 HPSE heparanase 2 2
MIRT673749 ZNF333 zinc finger protein 333 2 2
MIRT674807 FAM229B family with sequence similarity 229 member B 2 2
MIRT675286 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675391 SVOP SV2 related protein 2 2
MIRT675788 MED28 mediator complex subunit 28 2 2
MIRT676151 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676499 GJD3 gap junction protein delta 3 2 2
MIRT676621 CSNK1E casein kinase 1 epsilon 2 2
MIRT676644 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT676711 METTL14 methyltransferase like 14 2 2
MIRT676809 SHROOM4 shroom family member 4 2 2
MIRT677036 FOXO3 forkhead box O3 2 2
MIRT677062 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT677086 SMIM15 small integral membrane protein 15 2 2
MIRT677193 MURC caveolae associated protein 4 2 2
MIRT677273 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT677345 POC1A POC1 centriolar protein A 2 2
MIRT677504 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677526 OCIAD2 OCIA domain containing 2 2 2
MIRT677661 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT677727 SSR1 signal sequence receptor subunit 1 2 2
MIRT677803 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT678144 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678376 VTA1 vesicle trafficking 1 2 2
MIRT678708 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT678868 FAM118A family with sequence similarity 118 member A 2 2
MIRT679039 LACTB lactamase beta 2 2
MIRT679081 PURB purine rich element binding protein B 2 2
MIRT679137 SYK spleen associated tyrosine kinase 2 2
MIRT679299 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679741 CABP4 calcium binding protein 4 2 2
MIRT679946 AS3MT arsenite methyltransferase 2 2
MIRT679976 E2F2 E2F transcription factor 2 2 2
MIRT683628 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT683901 PSMB9 proteasome subunit beta 9 2 2
MIRT684172 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684231 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT685403 C1orf158 chromosome 1 open reading frame 158 2 2
MIRT686253 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT687513 NCKAP1 NCK associated protein 1 2 2
MIRT688243 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688315 FAM151B family with sequence similarity 151 member B 2 2
MIRT688733 CNDP1 carnosine dipeptidase 1 2 2
MIRT689031 ANGPTL3 angiopoietin like 3 2 2
MIRT698207 TMEM248 transmembrane protein 248 2 2
MIRT699859 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT709954 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT711541 MSH3 mutS homolog 3 2 2
MIRT712077 WDR37 WD repeat domain 37 2 2
MIRT715312 POLR2E RNA polymerase II subunit E 2 2
MIRT715725 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT715748 HSD11B1L hydroxysteroid 11-beta dehydrogenase 1 like 2 2
MIRT717604 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717875 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT718042 NIPAL2 NIPA like domain containing 2 2 2
MIRT718829 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT724037 CAMK2N2 calcium/calmodulin dependent protein kinase II inhibitor 2 2 2
MIRT733305 TNF tumor necrosis factor 1 0
MIRT734941 HSPA1B heat shock protein family A (Hsp70) member 1B 3 0
MIRT737343 IGF2 insulin like growth factor 2 3 0
MIRT737546 PTEN phosphatase and tensin homolog 2 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-23a 1'-Acetoxychavicol acetate (ACA) NULL 119104 Microarray HN4 cell line 24317043 2014 down-regulated
miR-23a 5-Fluorouracil approved 3385 Quantitative real-time PCR colon cancer cells 17702597 2007 up-regulated
miR-23a Curcumin NULL 969516 Microarray BxPC-3 human pancreatic carcinoma cell line 18347134 2008 up-regulated
miR-23a Enoxacin approved 3229 Quantitative real-time PCR HEK293 cells 18641635 2008 up-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Quantitative real-time PCR endometrial stromal 19088369 2008 down-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Quantitative real-time PCR glandular epithelial cells 19088369 2008 down-regulated
miR-23a Medroxyprogesterone acetate approved 6279 Quantitative real-time PCR endometrial stromal 19088369 2008 down-regulated
miR-23a Medroxyprogesterone acetate approved 6279 Quantitative real-time PCR glandular epithelial cells 19088369 2008 up-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Microarray MCF-7 breast cancer cells 19528081 2009 up-regulated
miR-23a Diethylstilbestrol approved 448537 Microarray mammosphere-derived epithelial cells (MDEC) 19549897 2009 down-regulated
miR-23a Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-23a Bio-Oss NULL NULL Microarray osteoblast-like cell line (MG63) 20224834 2010 up-regulated
miR-23a Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-23a 5-Fluorouracil approved 3385 Microarray MCF-7 breast cancer cells 21506117 2011 up-regulated
miR-23a Trastuzumab approved NULL Microarray BT474 cells 22384020 2012 up-regulated
miR-23a Trastuzumab approved NULL Microarray SKBR3 cells. 22384020 2012 up-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Quantitative real-time PCR thymus 23024791 2012 down-regulated
miR-23a Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-23a Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse liver 19270793 2009 up-regulated
miR-23a Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 up-regualted
miR-23a Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 down-regulated
miR-23a Comfrey NULL 6440495 Microarray rat liver 21370286 2011 up-regulated
miR-23a Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-23a Ethanol NULL 702 Quantitative real-time PCR zebrafish embryos 22298809 2012 down-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Microarray embryos 22921993 2012 up-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Microarray embryos 22921993 2012 up-regulated
miR-23a Morphine approved 5288826 Microarray human monocyte-derived macrophages (h-mdms) infection with HIV-1 20564181 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive Low Breast Cancer cell line (MDA-MB-231)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (BGC823)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (SGC-7901)
hsa-mir-23a Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-mir-23a Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-23a Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive cell line (OE19)
hsa-mir-23a Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-23a Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive cell line (SGC-7901)
hsa-miR-23a-5p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-23a-5p Palbociclib 5330286 NSC758247 approved resistant High Breast Cancer cell line (T47D)
hsa-miR-23a-5p Arsenic trioxide 261004 NSC759274 approved sensitive Low Acute Myeloid Leukemia cell line (U937, Kasumi-1, THP-1, Jurkat E6.1, SUP B15)
hsa-miR-23a-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-23a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-23a-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (CAL-27) (total RNA)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-23a-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-23a-5p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-23a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-23a-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-23a-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-23a-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-23a-5p Oxaliplatin 6857599 NSC266046 approved resistant cell line (IGROV-1)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (IGROV-1)
hsa-miR-23a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (MDA-231)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)
hsa-miR-23a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-23a-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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