pre-miRNA Information
pre-miRNA hsa-mir-2115   
Genomic Coordinates chr3: 48316360 - 48316459
Description Homo sapiens miR-2115 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-2115-3p
Sequence 58| CAUCAGAAUUCAUGGAGGCUAG |79
Evidence Experimental
Experiments 454
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN31490809 22 COSMIC
COSN31579735 22 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs543123304 18 dbSNP
rs1450988157 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TENM3   
Synonyms MCOPCB9, ODZ3, TNM3, Ten-m3, ten-3
Description teneurin transmembrane protein 3
Transcript NM_001080477   
Expression
Putative miRNA Targets on TENM3
3'UTR of TENM3
(miRNA target sites are highlighted)
>TENM3|NM_001080477|3'UTR
   1 CGCCCGGGCCGCGCCCGCCGAGCCGCTCACGCCCTGCCCACATTGTCCTGTGGCACAACCCGAGTGGGACTCTCCAACGC
  81 CCAAGAGCCTTCCTCCCGGGGGAATGAGACTGCTGTTACGACCCACACCCACACCGCGAAAACAAGGACCGCTTTTTTCC
 161 GAATGACCTTAAAGGTGATCGGCTTTAACGAATATGTTTACATATGCATAGCGCTGCACTCAGTCGGACTGAACGTAGCC
 241 AGAGGAAAAAAAAATCATCAAGGACAAAGGCCTCGACCTGTTGCGCTGGGCCGTCTGTTCCTTCTAGGCACTGTATTTAA
 321 CTAACTTTAAAAAAGAAAAAAAAATGTGTACAGTGTTTCCAAATAGTCCCGAATTGTCGACCTTTGCTTACAAGAAGTAG
 401 TCTGTCTGCATAGGATGTGATAGCTATCTCTGTTCATTTTACAATGTGGGGCAAAGTTACTGTTTCTAGACAACCCAACT
 481 GCTTTCCCTGTGCAGCTTTGTAGAAGGACATTGGCACAGTGACTTCTGCGGCGGGGATTTATTAATGGATTTTACAATGC
 561 TAACGTGGTTTCCCTTCGGGGAAAAAACTGGCAACTAGAATCCTTGTCACTGATAAGCAAAGGAAATCCTGATTTTTTTG
 641 TAAATTATGTGAGACAAGTTGTTTATGGATTTTTATATGAATTACAATTTACTGTACATCAAATCTTAGTCTCAGAGGAG
 721 TTAATTTATGTAAAGTGTTTAAAAATTTATACTTAAAAATAAAATGATAAAAACGTGAACTGTGTGATTTTTTTAAAAGG
 801 ATTGCACCTTTTGTTATCTGTTATAGCTGTACAGTATGAATTATTATATTGTAGAGATATAACAACTTATGCCTATAATG
 881 TCCAGAAGTGTTAATATTTTTGTATTAGGTTGAAAAAATGTGCAAGCTTCTATCACTAGATGGATAGGACCGTGCAATTC
 961 TAGGTGGGTGGCGAATCAGAGAGCTCCTTTCTCTTCCCTCTCTCACGCATCAGGCCAGTGTCCTCAGCATTGTCAACTGA
1041 GAGGCACAGTAGACAACTAGGGCTGGTGGAATGTAAGGGAAGAAGATTGAAAAAACGGGAGGAAGGGTTCTCTGGCCCTC
1121 TCTCAACCTTGCAAGTCAATGGGGAGTTGTTGATATAATTAACCCCGAGGTTTTTACTGTTACTGTTCCAAAGCTCTGTC
1201 TCTTGATGGAGGAGAGACCACATCAGATGCTGGGGAAATAGGAGGAGGAAAGGTTCTGATGTAGTCGTGATCCTAAACAC
1281 GTGTCTTAAGATCTAGGAAAGACAGCAGAAACCGAGCAGTGGTGGGTGAGCCAGATGGAGCCGGTCAGGGTTACTCTAAG
1361 CCCACATGACCAAACCATCTTGGGGGGCTGGTTTGAATGACAGCCTCTGCTCTGTCTCGGGGAAGCCGGGGGTGGCAGAT
1441 CCAGCTGGAAGTGAACTGACAGCCGCGCCCTCCTGCACACATGCATGCACGCGTGTGGGAACGAGCCCAGCCGCCATCTG
1521 CACTTCCGTGTCGGCTCAGCTCTGACAAATCTCTTTCCTGAGCACTAAATTCAGCCACGAAAATATTTTTAGAAGATATT
1601 TCTCAGTTCATCGAGCTATAGTACACACTGTTTTCCTCTATGTATAATGGTGATAAAATATAGCAAGTGAACATGTCGTA
1681 AATATAAAGGTTCAAGTGATGTATTGAAAATAATTTTCTAACTGCTTTGTATGTATCACATACTCTAAATTGCACAGTAG
1761 GCGTGTTTATTAAACAGATGATTGGCTGGGAAAGTTTCAAAATAGCTACTGAATTTACAGTATCAGTGCTATTACTGTCT
1841 TTGTGTATTTGGTAGAGCATACCGAAGTAATTAATCTTCTAATGAATGCTGATGATATTTTATTAGAATGAAAGCACAGA
1921 TTAGCATTAATATTTTTTATTCTGGAAATCCTTTGGCAAGTATTATGAAGCCCAAATTTAGAAAACTATGAGATTTCAAA
2001 CCACATAAACATGATTCTGTTTTCCATTTTATTTTTTAACTGTTAGGTATTTGCAGTTCTGTTCCGTGGAACTTCTGCAG
2081 GCCTGTATTTAGCATGCTGTAAGTACTTTTGGGTGAAATAGGCTCTGAGTCTAAATTCTCAGACATGTTTCTGATGTATT
2161 ACCATGAAAAGCTTGTGCCACATGACAGAAGTGAGATCATAGTCTTAACCTCTTCTTGACGTGGACTGGTCTTCACTCGG
2241 GCACCGATAAATAACAGATTTGGAGTATCTCCTGGTGCTTATTTTAGATGATGAAGTCAAATCAACCCAATTAGTGTCCT
2321 GTTAGTAGGTATAATGAGCCTATTTCTTTCTAAAAAGACTTGTGATCTGGACATGCTTTTACAAGAAATAGTGACCTTGG
2401 GGAATATGTAAACAAAAGACCTTTTTCTAAGAGTTGGGAGGGGGTGGGGGACTGTATAATGAAAAGAATTAGCTTACAAA
2481 AAAGAAATTGATATTCAAAGTATTTTAGGCAAAGCCAGTCAAAATGCTTTCATGATATTTTGAGATGTAAATTTTGTCTG
2561 ATTTGTATTGTTCTTTTCATTTGCCTTCTTAACTTTATATGTGACCTGAATTTTCCATAACTTGATGACTATAGATTGCA
2641 CCTAGGCATTCCAATAAAAGCCAACCCAATGTG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaUCGGAG---GUACUUAAGACUAc 5'
            | :|||   ||||  ||||||| 
Target 5' aaATTCTCAGACATG-TTTCTGATg 3'
2133 - 2156 155.00 -15.90
2
miRNA  3' gaucggaggUACUU---AAGACUAc 5'
                   | |||   ||||||| 
Target 5' aataggaggAGGAAAGGTTCTGATg 3'
1237 - 1261 145.00 -10.80
3
miRNA  3' gaUCGGAGG-UACUUAAGACUAc 5'
            | |:||: |||||| ||||| 
Target 5' taATCTTCTAATGAATGCTGATg 3'
1872 - 1894 144.00 -18.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31557017 14 COSMIC
COSN30541420 18 COSMIC
COSN30738266 26 COSMIC
COSN31578620 42 COSMIC
COSN31545950 63 COSMIC
COSN7633774 152 COSMIC
COSN31593533 191 COSMIC
COSN26638708 207 COSMIC
COSN31546310 222 COSMIC
COSN20100831 255 COSMIC
COSN17674939 273 COSMIC
COSN31536452 279 COSMIC
COSN31572034 285 COSMIC
COSN31562671 520 COSMIC
COSN31528317 530 COSMIC
COSN16252158 531 COSMIC
COSN31584596 578 COSMIC
COSN28196214 583 COSMIC
COSN31482713 613 COSMIC
COSN31533066 752 COSMIC
COSN31533067 774 COSMIC
COSN31528963 775 COSMIC
COSN24746932 815 COSMIC
COSN31596124 862 COSMIC
COSN28684379 967 COSMIC
COSN31590821 985 COSMIC
COSN24294903 1008 COSMIC
COSN32058644 1024 COSMIC
COSN24048057 1037 COSMIC
COSN31579578 1493 COSMIC
COSN28648475 1514 COSMIC
COSN16677909 1583 COSMIC
COSN31567858 1603 COSMIC
COSN30540741 1702 COSMIC
COSN15130001 1792 COSMIC
COSN30161193 1865 COSMIC
COSN31487307 2014 COSMIC
COSN22566225 2044 COSMIC
COSN29468609 2067 COSMIC
COSN1292979 2189 COSMIC
COSN6579342 2246 COSMIC
COSN31523042 2254 COSMIC
COSN23345287 2281 COSMIC
COSN31595504 2323 COSMIC
COSN28201156 2351 COSMIC
COSN31546631 2368 COSMIC
COSN15660429 2392 COSMIC
COSN31563639 2435 COSMIC
COSN30264522 2445 COSMIC
COSN8490463 2472 COSMIC
rs1128956 2502 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs971866330 3 dbSNP
rs1044544273 5 dbSNP
rs1258879489 6 dbSNP
rs1176033865 7 dbSNP
rs1009699000 8 dbSNP
rs756537050 9 dbSNP
rs1275404550 11 dbSNP
rs1469243036 12 dbSNP
rs575456022 13 dbSNP
rs1240883731 14 dbSNP
rs954446282 15 dbSNP
rs1476072806 16 dbSNP
rs1252067001 18 dbSNP
rs1186631185 20 dbSNP
rs556524629 21 dbSNP
rs757759010 23 dbSNP
rs779467367 25 dbSNP
rs745381677 26 dbSNP
rs942988948 27 dbSNP
rs771508516 29 dbSNP
rs779701972 30 dbSNP
rs1346899140 31 dbSNP
rs1432919387 32 dbSNP
rs1278899149 40 dbSNP
rs1354946109 43 dbSNP
rs1350945154 44 dbSNP
rs371138677 46 dbSNP
rs1295415995 48 dbSNP
rs1357429574 49 dbSNP
rs1204924304 50 dbSNP
rs1282724654 51 dbSNP
rs1033705075 52 dbSNP
rs1409476378 55 dbSNP
rs1039964178 57 dbSNP
rs62336284 59 dbSNP
rs1187958997 61 dbSNP
rs181544353 62 dbSNP
rs963222849 65 dbSNP
rs1171395370 68 dbSNP
rs1455654486 71 dbSNP
rs1041896103 74 dbSNP
rs1476480482 75 dbSNP
rs1180960199 82 dbSNP
rs971917210 83 dbSNP
rs377623778 85 dbSNP
rs1187646298 87 dbSNP
rs919197817 93 dbSNP
rs1424893002 99 dbSNP
rs1468603577 100 dbSNP
rs370700972 101 dbSNP
rs1329552380 102 dbSNP
rs1267283133 103 dbSNP
rs746263612 109 dbSNP
rs1002977426 124 dbSNP
rs1057201460 131 dbSNP
rs1179177734 135 dbSNP
rs933233577 135 dbSNP
rs373233691 136 dbSNP
rs1013328116 138 dbSNP
rs1332739408 146 dbSNP
rs563904679 149 dbSNP
rs1384454403 151 dbSNP
rs1389784787 152 dbSNP
rs1158915524 153 dbSNP
rs1455257440 153 dbSNP
rs1016219017 162 dbSNP
rs963606093 174 dbSNP
rs1472166341 176 dbSNP
rs1342989770 181 dbSNP
rs1432458918 184 dbSNP
rs1195176934 193 dbSNP
rs1465301008 194 dbSNP
rs1247106239 195 dbSNP
rs1270452249 201 dbSNP
rs993318366 207 dbSNP
rs1206580340 210 dbSNP
rs1366616106 212 dbSNP
rs1221413197 214 dbSNP
rs560188319 217 dbSNP
rs1284993687 228 dbSNP
rs1026116183 235 dbSNP
rs1053536071 244 dbSNP
rs893557152 244 dbSNP
rs11433703 246 dbSNP
rs13790 246 dbSNP
rs945569553 246 dbSNP
rs1042545688 247 dbSNP
rs1282229075 252 dbSNP
rs868833825 253 dbSNP
rs1003812516 254 dbSNP
rs1410913237 254 dbSNP
rs572046802 255 dbSNP
rs987184060 256 dbSNP
rs1186645275 270 dbSNP
rs1246390762 271 dbSNP
rs1247102506 273 dbSNP
rs910260022 275 dbSNP
rs964448003 277 dbSNP
rs1268910277 280 dbSNP
rs895153144 281 dbSNP
rs1207376932 283 dbSNP
rs1201964018 286 dbSNP
rs1370118354 288 dbSNP
rs1275823098 289 dbSNP
rs1347751830 291 dbSNP
rs989533431 291 dbSNP
rs774682231 293 dbSNP
rs545740767 294 dbSNP
rs914857991 298 dbSNP
rs759909771 301 dbSNP
rs1316799372 308 dbSNP
rs1309529373 309 dbSNP
rs1430447575 312 dbSNP
rs1429797673 313 dbSNP
rs1472546316 318 dbSNP
rs1166600114 323 dbSNP
rs1434864801 325 dbSNP
rs1425541487 326 dbSNP
rs1190417020 327 dbSNP
rs1005508928 329 dbSNP
rs1157409616 330 dbSNP
rs1017010818 334 dbSNP
rs1483406500 335 dbSNP
rs111839761 336 dbSNP
rs1314464831 336 dbSNP
rs993763052 336 dbSNP
rs141104467 337 dbSNP
rs772273726 344 dbSNP
rs4241752 349 dbSNP
rs938800364 354 dbSNP
rs910429914 356 dbSNP
rs1349285989 362 dbSNP
rs4861520 369 dbSNP
rs562879804 380 dbSNP
rs755782179 392 dbSNP
rs530223498 393 dbSNP
rs1304667088 395 dbSNP
rs948770192 396 dbSNP
rs769803215 400 dbSNP
rs915021773 403 dbSNP
rs1473048201 409 dbSNP
rs548547688 411 dbSNP
rs945126702 413 dbSNP
rs1180100030 422 dbSNP
rs1352898623 424 dbSNP
rs1038092603 425 dbSNP
rs1224359247 427 dbSNP
rs186273934 429 dbSNP
rs1489905333 430 dbSNP
rs745937878 431 dbSNP
rs993393412 433 dbSNP
rs1026148658 436 dbSNP
rs1482958797 437 dbSNP
rs534044482 447 dbSNP
rs1267821115 448 dbSNP
rs1328057567 453 dbSNP
rs1286144617 461 dbSNP
rs1180259834 463 dbSNP
rs1397260787 466 dbSNP
rs544692306 475 dbSNP
rs191225899 476 dbSNP
rs1302165712 479 dbSNP
rs1445777699 481 dbSNP
rs180818280 496 dbSNP
rs895397780 501 dbSNP
rs1456567220 510 dbSNP
rs1005539857 511 dbSNP
rs556487578 512 dbSNP
rs1038317934 514 dbSNP
rs1425598523 519 dbSNP
rs1190989227 521 dbSNP
rs1181736875 523 dbSNP
rs897123020 525 dbSNP
rs150306819 527 dbSNP
rs989217295 532 dbSNP
rs1030123796 534 dbSNP
rs868095726 538 dbSNP
rs1265828487 539 dbSNP
rs966329934 542 dbSNP
rs1321757638 549 dbSNP
rs1165156843 550 dbSNP
rs1365929655 555 dbSNP
rs761840534 558 dbSNP
rs924851308 566 dbSNP
rs964609265 568 dbSNP
rs1321200981 572 dbSNP
rs1326626936 572 dbSNP
rs535588289 576 dbSNP
rs553691654 578 dbSNP
rs989169255 579 dbSNP
rs1477570308 582 dbSNP
rs1442838710 583 dbSNP
rs866146643 594 dbSNP
rs1287291141 595 dbSNP
rs1283663400 604 dbSNP
rs938873051 607 dbSNP
rs914924242 610 dbSNP
rs1292841645 611 dbSNP
rs1392554738 614 dbSNP
rs1341749507 616 dbSNP
rs993384611 625 dbSNP
rs1449214396 628 dbSNP
rs916024317 629 dbSNP
rs948827326 630 dbSNP
rs977870935 633 dbSNP
rs927701843 655 dbSNP
rs572070553 657 dbSNP
rs1298203923 662 dbSNP
rs1227613289 665 dbSNP
rs7671657 669 dbSNP
rs577987143 670 dbSNP
rs1303149846 674 dbSNP
rs1388675784 679 dbSNP
rs1187529928 686 dbSNP
rs1241983848 687 dbSNP
rs186298136 688 dbSNP
rs1372537545 690 dbSNP
rs1169743228 692 dbSNP
rs1429701592 700 dbSNP
rs916856012 701 dbSNP
rs750174643 704 dbSNP
rs1434174027 707 dbSNP
rs1266198993 712 dbSNP
rs1196881633 714 dbSNP
rs758298130 716 dbSNP
rs1337375135 721 dbSNP
rs941636317 721 dbSNP
rs748753369 724 dbSNP
rs1233688342 727 dbSNP
rs1330352113 733 dbSNP
rs1461198002 735 dbSNP
rs1491289288 735 dbSNP
rs1038558270 736 dbSNP
rs1308731817 738 dbSNP
rs1352363878 738 dbSNP
rs370370312 743 dbSNP
rs1429262983 744 dbSNP
rs897160084 746 dbSNP
rs929925310 750 dbSNP
rs757164301 754 dbSNP
rs1051226801 755 dbSNP
rs745626041 755 dbSNP
rs1473375539 756 dbSNP
rs75291894 756 dbSNP
rs1398441245 769 dbSNP
rs543056646 776 dbSNP
rs1258156258 778 dbSNP
rs1008764844 781 dbSNP
rs146589912 781 dbSNP
rs1336050614 782 dbSNP
rs1380652661 785 dbSNP
rs1454603029 786 dbSNP
rs900312912 787 dbSNP
rs1010837352 788 dbSNP
rs1331492852 788 dbSNP
rs1315860620 789 dbSNP
rs1022594785 790 dbSNP
rs1334096480 795 dbSNP
rs200246582 795 dbSNP
rs754316179 795 dbSNP
rs1397146810 796 dbSNP
rs1225539982 805 dbSNP
rs890354820 807 dbSNP
rs1459214430 809 dbSNP
rs538055904 811 dbSNP
rs1008713664 817 dbSNP
rs1340582647 817 dbSNP
rs1034807231 819 dbSNP
rs144928340 830 dbSNP
rs1369732756 833 dbSNP
rs149064295 834 dbSNP
rs1261867868 838 dbSNP
rs1240971478 839 dbSNP
rs1463064813 839 dbSNP
rs990508139 840 dbSNP
rs916759453 849 dbSNP
rs1184857865 851 dbSNP
rs1243219689 855 dbSNP
rs900311561 858 dbSNP
rs1011077345 863 dbSNP
rs548723647 865 dbSNP
rs1407398537 866 dbSNP
rs1382688770 877 dbSNP
rs190711598 880 dbSNP
rs1437700244 881 dbSNP
rs1427492850 891 dbSNP
rs966402761 891 dbSNP
rs974296556 892 dbSNP
rs977752557 895 dbSNP
rs1398621838 903 dbSNP
rs930027223 905 dbSNP
rs1163339336 909 dbSNP
rs1051521591 913 dbSNP
rs891233207 921 dbSNP
rs1031948913 922 dbSNP
rs1403765280 926 dbSNP
rs960263284 928 dbSNP
rs1247204413 932 dbSNP
rs993064301 932 dbSNP
rs1470919787 934 dbSNP
rs1445500865 935 dbSNP
rs77121941 936 dbSNP
rs576245334 937 dbSNP
rs973903837 939 dbSNP
rs754695139 941 dbSNP
rs1313517070 942 dbSNP
rs929347619 949 dbSNP
rs1366323898 952 dbSNP
rs7672260 953 dbSNP
rs1327366110 958 dbSNP
rs1323858894 961 dbSNP
rs911864794 967 dbSNP
rs1223225322 968 dbSNP
rs944645876 969 dbSNP
rs1038912892 973 dbSNP
rs900342155 974 dbSNP
rs182964519 979 dbSNP
rs1478919413 982 dbSNP
rs1248650459 984 dbSNP
rs1199903215 987 dbSNP
rs1340435892 990 dbSNP
rs35388128 997 dbSNP
rs771371614 998 dbSNP
rs1343510897 1002 dbSNP
rs1273007239 1003 dbSNP
rs1213169356 1007 dbSNP
rs960337251 1008 dbSNP
rs1275032645 1014 dbSNP
rs1403972317 1016 dbSNP
rs1343025868 1017 dbSNP
rs990535880 1028 dbSNP
rs1256072203 1042 dbSNP
rs550199972 1044 dbSNP
rs902247656 1049 dbSNP
rs568318826 1050 dbSNP
rs779401048 1052 dbSNP
rs535398563 1059 dbSNP
rs1034695919 1061 dbSNP
rs188530018 1082 dbSNP
rs1177357681 1086 dbSNP
rs1480242551 1088 dbSNP
rs1263348724 1090 dbSNP
rs960336611 1096 dbSNP
rs572128029 1106 dbSNP
rs372151413 1107 dbSNP
rs1198337746 1112 dbSNP
rs539656292 1113 dbSNP
rs531083496 1118 dbSNP
rs1481370924 1124 dbSNP
rs1177146875 1131 dbSNP
rs746194124 1132 dbSNP
rs557424640 1137 dbSNP
rs1023181863 1140 dbSNP
rs191489034 1141 dbSNP
rs1290733545 1143 dbSNP
rs1228448457 1144 dbSNP
rs1372033969 1145 dbSNP
rs550638988 1146 dbSNP
rs1404569905 1155 dbSNP
rs143737524 1156 dbSNP
rs1359468021 1161 dbSNP
rs1301612634 1167 dbSNP
rs1468101977 1168 dbSNP
rs1347842716 1169 dbSNP
rs1224631830 1176 dbSNP
rs973593900 1181 dbSNP
rs920708132 1186 dbSNP
rs950816691 1189 dbSNP
rs1238624224 1194 dbSNP
rs1315689244 1195 dbSNP
rs1236203186 1207 dbSNP
rs942639454 1209 dbSNP
rs983476996 1210 dbSNP
rs911895939 1211 dbSNP
rs1209000094 1214 dbSNP
rs1315759459 1227 dbSNP
rs1304249642 1228 dbSNP
rs2309777 1240 dbSNP
rs1221357754 1242 dbSNP
rs138418970 1243 dbSNP
rs1490790526 1248 dbSNP
rs1043934189 1254 dbSNP
rs921870673 1255 dbSNP
rs999864045 1257 dbSNP
rs142997446 1264 dbSNP
rs1157005452 1267 dbSNP
rs946567986 1268 dbSNP
rs1161291104 1276 dbSNP
rs1043563258 1287 dbSNP
rs1056347570 1288 dbSNP
rs1183556820 1291 dbSNP
rs1443123513 1296 dbSNP
rs1250314884 1297 dbSNP
rs1205296651 1314 dbSNP
rs775972931 1315 dbSNP
rs1321853007 1322 dbSNP
rs1424242306 1343 dbSNP
rs999292215 1344 dbSNP
rs1023372573 1345 dbSNP
rs79668751 1350 dbSNP
rs535314732 1357 dbSNP
rs1287383808 1369 dbSNP
rs995712951 1378 dbSNP
rs1459480669 1380 dbSNP
rs1026249840 1382 dbSNP
rs1298001148 1383 dbSNP
rs1371725856 1384 dbSNP
rs1393661210 1388 dbSNP
rs1392342690 1394 dbSNP
rs1194344202 1396 dbSNP
rs1428354882 1402 dbSNP
rs1308504548 1406 dbSNP
rs1353884566 1419 dbSNP
rs1490355527 1420 dbSNP
rs896163125 1423 dbSNP
rs73869833 1428 dbSNP
rs1023678682 1429 dbSNP
rs543502938 1433 dbSNP
rs546464587 1436 dbSNP
rs975398822 1464 dbSNP
rs536060817 1465 dbSNP
rs1479582625 1468 dbSNP
rs1178935498 1475 dbSNP
rs370003197 1476 dbSNP
rs1302635462 1477 dbSNP
rs1403255992 1480 dbSNP
rs1372937217 1483 dbSNP
rs1169050424 1490 dbSNP
rs1461774195 1491 dbSNP
rs983506470 1492 dbSNP
rs183446258 1494 dbSNP
rs766254064 1496 dbSNP
rs531849816 1499 dbSNP
rs1056822828 1503 dbSNP
rs1387274995 1504 dbSNP
rs1011894435 1510 dbSNP
rs1251112265 1513 dbSNP
rs11947354 1514 dbSNP
rs1479507374 1524 dbSNP
rs1257556659 1528 dbSNP
rs898142842 1533 dbSNP
rs568380880 1534 dbSNP
rs979321670 1535 dbSNP
rs1352454157 1536 dbSNP
rs1299279928 1540 dbSNP
rs761811789 1550 dbSNP
rs867021994 1552 dbSNP
rs1391331927 1571 dbSNP
rs1394694885 1572 dbSNP
rs1304953629 1581 dbSNP
rs1470538972 1585 dbSNP
rs951672613 1594 dbSNP
rs1173860494 1598 dbSNP
rs529314031 1599 dbSNP
rs1363900618 1601 dbSNP
rs1056261294 1602 dbSNP
rs1312316224 1604 dbSNP
rs1417244473 1605 dbSNP
rs1384453587 1610 dbSNP
rs547361785 1611 dbSNP
rs7677811 1613 dbSNP
rs1204047076 1614 dbSNP
rs964272178 1626 dbSNP
rs754581723 1628 dbSNP
rs375469514 1630 dbSNP
rs539255651 1634 dbSNP
rs1258579375 1636 dbSNP
rs1044748591 1643 dbSNP
rs1352872921 1643 dbSNP
rs1460842952 1643 dbSNP
rs1201780486 1645 dbSNP
rs1238501261 1645 dbSNP
rs1245060867 1646 dbSNP
rs750407728 1648 dbSNP
rs968717193 1652 dbSNP
rs1453794555 1675 dbSNP
rs977910468 1678 dbSNP
rs1458501392 1679 dbSNP
rs373173798 1679 dbSNP
rs995052441 1683 dbSNP
rs1027827996 1686 dbSNP
rs886641637 1687 dbSNP
rs557535225 1691 dbSNP
rs1184180677 1699 dbSNP
rs763033815 1702 dbSNP
rs1430711939 1705 dbSNP
rs1019008068 1707 dbSNP
rs1181900551 1709 dbSNP
rs991938466 1712 dbSNP
rs917855719 1721 dbSNP
rs763593416 1728 dbSNP
rs1348680637 1730 dbSNP
rs1294534492 1731 dbSNP
rs947990741 1732 dbSNP
rs966139009 1739 dbSNP
rs1313380185 1746 dbSNP
rs1433410730 1748 dbSNP
rs1326643015 1753 dbSNP
rs1317263049 1758 dbSNP
rs1334051431 1761 dbSNP
rs187940367 1763 dbSNP
rs1448293075 1764 dbSNP
rs780840199 1776 dbSNP
rs1283229213 1779 dbSNP
rs1029015732 1781 dbSNP
rs1164082571 1783 dbSNP
rs191465008 1786 dbSNP
rs1170234005 1787 dbSNP
rs536767389 1793 dbSNP
rs1475645322 1796 dbSNP
rs979352733 1803 dbSNP
rs1242882946 1819 dbSNP
rs1216068839 1825 dbSNP
rs35670696 1833 dbSNP
rs1192786071 1840 dbSNP
rs7656336 1843 dbSNP
rs1278615116 1850 dbSNP
rs923847644 1851 dbSNP
rs765020644 1852 dbSNP
rs1223788941 1855 dbSNP
rs1359344455 1857 dbSNP
rs1290292235 1858 dbSNP
rs1340551063 1859 dbSNP
rs1047285602 1864 dbSNP
rs554915599 1865 dbSNP
rs1488580668 1870 dbSNP
rs917688328 1889 dbSNP
rs1221677858 1890 dbSNP
rs571613946 1896 dbSNP
rs573535568 1909 dbSNP
rs947848008 1920 dbSNP
rs1303218775 1921 dbSNP
rs1008836652 1927 dbSNP
rs1363611072 1933 dbSNP
rs7678795 1957 dbSNP
rs538552351 1958 dbSNP
rs1443119721 1959 dbSNP
rs1172493283 1963 dbSNP
rs1410281140 1964 dbSNP
rs1019814212 1967 dbSNP
rs899974284 1968 dbSNP
rs1215298856 1974 dbSNP
rs561668791 1982 dbSNP
rs1431806575 1986 dbSNP
rs898167082 1986 dbSNP
rs554165192 1987 dbSNP
rs7661251 1990 dbSNP
rs997112398 1995 dbSNP
rs1021848560 2006 dbSNP
rs751435099 2007 dbSNP
rs1486988220 2010 dbSNP
rs7683043 2012 dbSNP
rs969161015 2013 dbSNP
rs1049337895 2044 dbSNP
rs1272762243 2047 dbSNP
rs7683549 2048 dbSNP
rs7661283 2059 dbSNP
rs886672684 2060 dbSNP
rs1005034586 2066 dbSNP
rs73869834 2067 dbSNP
rs1222337353 2087 dbSNP
rs1343128382 2088 dbSNP
rs1479735067 2089 dbSNP
rs1442853628 2100 dbSNP
rs1326601310 2104 dbSNP
rs1179292459 2106 dbSNP
rs754571184 2110 dbSNP
rs546376556 2111 dbSNP
rs780909499 2113 dbSNP
rs141406098 2114 dbSNP
rs1480129047 2120 dbSNP
rs996280601 2123 dbSNP
rs1427318874 2124 dbSNP
rs1343005934 2128 dbSNP
rs1179406771 2138 dbSNP
rs1470803638 2144 dbSNP
rs867706189 2154 dbSNP
rs1202834708 2155 dbSNP
rs980657460 2157 dbSNP
rs1344716003 2162 dbSNP
rs1202663933 2172 dbSNP
rs1320724947 2174 dbSNP
rs1221583769 2188 dbSNP
rs1285171038 2196 dbSNP
rs7661645 2201 dbSNP
rs1372511308 2202 dbSNP
rs1474252713 2213 dbSNP
rs1277754270 2222 dbSNP
rs1345655370 2224 dbSNP
rs1406586080 2225 dbSNP
rs531983220 2235 dbSNP
rs543910496 2239 dbSNP
rs755656458 2240 dbSNP
rs562246706 2246 dbSNP
rs371585341 2247 dbSNP
rs575350222 2249 dbSNP
rs1217695892 2252 dbSNP
rs1268621567 2253 dbSNP
rs1244137758 2258 dbSNP
rs1182539492 2259 dbSNP
rs1489973050 2262 dbSNP
rs917761089 2268 dbSNP
rs997017525 2269 dbSNP
rs1128955 2271 dbSNP
rs11542347 2277 dbSNP
rs1021916765 2282 dbSNP
rs1282002035 2287 dbSNP
rs1315862732 2287 dbSNP
rs969593295 2298 dbSNP
rs1202196475 2303 dbSNP
rs114178363 2304 dbSNP
rs1470079453 2310 dbSNP
rs1383165448 2316 dbSNP
rs999283327 2317 dbSNP
rs1450250872 2329 dbSNP
rs1377237263 2330 dbSNP
rs7683652 2335 dbSNP
rs1290910147 2337 dbSNP
rs1431515249 2339 dbSNP
rs1344720842 2340 dbSNP
rs1157424188 2359 dbSNP
rs75186259 2360 dbSNP
rs960283444 2361 dbSNP
rs758984439 2373 dbSNP
rs1022966144 2377 dbSNP
rs1422478132 2381 dbSNP
rs1263380514 2383 dbSNP
rs1186763958 2384 dbSNP
rs1158919114 2386 dbSNP
rs1260412732 2389 dbSNP
rs537964122 2397 dbSNP
rs1224550495 2399 dbSNP
rs1364712550 2401 dbSNP
rs1291028991 2410 dbSNP
rs1243476359 2414 dbSNP
rs969227870 2419 dbSNP
rs1215388677 2422 dbSNP
rs1402817631 2428 dbSNP
rs866549687 2433 dbSNP
rs879408437 2436 dbSNP
rs1331539062 2440 dbSNP
rs201730747 2440 dbSNP
rs780279488 2443 dbSNP
rs1277840073 2444 dbSNP
rs1375703642 2446 dbSNP
rs1456667237 2449 dbSNP
rs1375172325 2450 dbSNP
rs1170622705 2451 dbSNP
rs1427567005 2460 dbSNP
rs1421092638 2467 dbSNP
rs1200949426 2470 dbSNP
rs1490380921 2473 dbSNP
rs868483671 2486 dbSNP
rs908186758 2490 dbSNP
rs1128956 2502 dbSNP
rs574548669 2504 dbSNP
rs1251689037 2508 dbSNP
rs1226500815 2516 dbSNP
rs1357598082 2532 dbSNP
rs1373135181 2532 dbSNP
rs768692186 2534 dbSNP
rs1346254517 2543 dbSNP
rs1283158121 2548 dbSNP
rs1385596304 2552 dbSNP
rs62336285 2565 dbSNP
rs1299085634 2567 dbSNP
rs1461851879 2568 dbSNP
rs1397631706 2571 dbSNP
rs996742700 2572 dbSNP
rs1180374042 2574 dbSNP
rs1230649796 2583 dbSNP
rs1427997430 2584 dbSNP
rs1196589706 2585 dbSNP
rs1441057104 2586 dbSNP
rs1420795736 2594 dbSNP
rs1178742328 2595 dbSNP
rs1384175965 2596 dbSNP
rs1422362926 2598 dbSNP
rs182092473 2601 dbSNP
rs1164717175 2607 dbSNP
rs1050573363 2608 dbSNP
rs1456313794 2611 dbSNP
rs1256341929 2617 dbSNP
rs1391253779 2623 dbSNP
rs748189701 2625 dbSNP
rs769971814 2632 dbSNP
rs1031022190 2639 dbSNP
rs1231230021 2642 dbSNP
rs956653089 2659 dbSNP
rs1409297546 2661 dbSNP
rs1013511768 2668 dbSNP
rs1326818894 2671 dbSNP
rs1379177649 2672 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000511685.1 | 3UTR | AGAUGCUGGGGAAAUAGGAGGAGGAAAGGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
80 hsa-miR-2115-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057089 DDIT4 DNA damage inducible transcript 4 2 2
MIRT071216 FCF1 FCF1, rRNA-processing protein 2 2
MIRT226901 RAD23B RAD23 homolog B, nucleotide excision repair protein 2 2
MIRT235961 BACH1 BTB domain and CNC homolog 1 2 2
MIRT294569 ZNF460 zinc finger protein 460 2 4
MIRT321046 RAC1 Rac family small GTPase 1 2 4
MIRT359666 NUS1 NUS1 dehydrodolichyl diphosphate synthase subunit 2 8
MIRT366451 KLHL15 kelch like family member 15 2 2
MIRT405375 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT441794 TCEAL5 transcription elongation factor A like 5 2 2
MIRT443295 TCEAL3 transcription elongation factor A like 3 2 2
MIRT455275 DDX39B DExD-box helicase 39B 2 2
MIRT458523 C5orf22 chromosome 5 open reading frame 22 2 2
MIRT464960 TWIST1 twist family bHLH transcription factor 1 2 2
MIRT466848 STX6 syntaxin 6 2 2
MIRT469252 RHOB ras homolog family member B 2 2
MIRT469825 RAB14 RAB14, member RAS oncogene family 2 4
MIRT470047 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT471420 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT472024 NPM1 nucleophosmin 1 2 2
MIRT484156 CENPN centromere protein N 2 2
MIRT485490 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT490462 PROSER2 proline and serine rich 2 2 2
MIRT493069 MTCH1 mitochondrial carrier 1 2 2
MIRT493573 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 8
MIRT494919 NDUFC2-KCTD14 NDUFC2-KCTD14 readthrough 2 2
MIRT500439 ZMAT3 zinc finger matrin-type 3 2 2
MIRT500931 SRPR SRP receptor alpha subunit 2 4
MIRT501551 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT501809 NEURL1B neuralized E3 ubiquitin protein ligase 1B 2 2
MIRT502415 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT506504 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT507861 CCNE2 cyclin E2 2 2
MIRT510511 YOD1 YOD1 deubiquitinase 2 6
MIRT516073 RAB42 RAB42, member RAS oncogene family 2 2
MIRT519030 KYNU kynureninase 2 6
MIRT521762 PPIL1 peptidylprolyl isomerase like 1 2 4
MIRT522898 KCNJ3 potassium voltage-gated channel subfamily J member 3 2 4
MIRT527370 MGARP mitochondria localized glutamic acid rich protein 2 2
MIRT530691 C8orf46 chromosome 8 open reading frame 46 2 2
MIRT530867 TRUB1 TruB pseudouridine synthase family member 1 2 2
MIRT531832 MTPAP mitochondrial poly(A) polymerase 2 4
MIRT533035 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT533165 WIPF2 WAS/WASL interacting protein family member 2 2 2
MIRT533464 TRIM71 tripartite motif containing 71 2 2
MIRT534331 SHCBP1 SHC binding and spindle associated 1 2 2
MIRT539372 ADSS adenylosuccinate synthase 2 6
MIRT545951 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT553283 TSR1 TSR1, ribosome maturation factor 2 2
MIRT553532 TMEM185B transmembrane protein 185B 2 4
MIRT556480 LIPA lipase A, lysosomal acid type 2 2
MIRT556975 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT557697 GATA6 GATA binding protein 6 2 2
MIRT558901 CCDC58 coiled-coil domain containing 58 2 2
MIRT559224 BLMH bleomycin hydrolase 2 2
MIRT559827 SLPI secretory leukocyte peptidase inhibitor 2 2
MIRT563435 SLC3A2 solute carrier family 3 member 2 2 2
MIRT569270 PCDH11X protocadherin 11 X-linked 2 2
MIRT571386 JKAMP JNK1/MAPK8-associated membrane protein 2 2
MIRT572567 AFF1 AF4/FMR2 family member 1 2 2
MIRT610400 AR androgen receptor 2 2
MIRT611058 ZNF621 zinc finger protein 621 2 2
MIRT635118 TMEM233 transmembrane protein 233 2 2
MIRT641617 DEFB118 defensin beta 118 2 2
MIRT642146 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT647295 C8orf33 chromosome 8 open reading frame 33 2 2
MIRT648155 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT652780 TENM3 teneurin transmembrane protein 3 2 2
MIRT657356 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT658718 ELN elastin 2 2
MIRT662441 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT665302 ZBTB38 zinc finger and BTB domain containing 38 2 2
MIRT699898 RUNX1 runt related transcription factor 1 2 2
MIRT700921 PDS5A PDS5 cohesin associated factor A 2 2
MIRT700992 PDE3A phosphodiesterase 3A 2 2
MIRT707397 DCAF4L1 DDB1 and CUL4 associated factor 4 like 1 2 2
MIRT711895 INSIG2 insulin induced gene 2 2 2
MIRT712072 XRCC5 X-ray repair cross complementing 5 2 2
MIRT716121 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT724470 SMAD2 SMAD family member 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-2115 Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-mir-2115 Decitabine 451668 approved sensitive tissue (esopheageal cancer)
hsa-miR-2115-3p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-2115-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-2115-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-2115-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-2115-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-2115-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-2115-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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