pre-miRNA Information
pre-miRNA hsa-mir-125b-2   
Genomic Coordinates chr21: 16590237 - 16590325
Synonyms MIRN125B2, MIR125B2
Description Homo sapiens miR-125b-2 stem-loop
Comment This miRNA sequence is predicted based on homology to a verified miRNA from mouse .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-125b-2-3p
Sequence 54| UCACAAGUCAGGCUCUUGGGAC |75
Evidence Experimental
Experiments Cloned
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 21 + 16590292 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs575583557 6 dbSNP
rs1331783293 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SSR3   
Synonyms TRAPG
Description signal sequence receptor subunit 3
Transcript NM_007107   
Expression
Putative miRNA Targets on SSR3
3'UTR of SSR3
(miRNA target sites are highlighted)
>SSR3|NM_007107|3'UTR
   1 ACCATGTCAGCTTCACCCCCTGGCTTTGTGTCTATGGGTGGCCTGTGGTATATGGAAAAGTAGCAGGGTGGTCAGGGTGG
  81 GAGACACAAGATGTTTTTATAGTCTAGAGCCTTTAAAAAACCCAGCAGAATGTAATTCAGTATTTGTTTATTGGCTGTTT
 161 TTTGACAGATTGTTGAAATTAAATGAATTGAAAGGGAAACTCAGAGTACTAGGACGTTTATTAAAAGGAAAAAAATGTCT
 241 TGCAATGTGCTGTAATCACAAGAGGAGAAAATAACTTGTTTCCTTGATCTGTCAGAGGTCACAGTAACCTGGGCCGAGCT
 321 GTTATTATTTATTATATAATAGTAGTAGGAAGTTAATAACTGGTTCTCTGTGTTCCAAGCACAATATTACAACTTCTTTT
 401 GAACCGTAAATATCAGAATGAATCCTCTTCCCAGGGGATTGAACAGAAGCTTAATGTTTACAAGTGTTTGAATTTGTGAT
 481 CTGAAATAACACAAAATTAAAAACATGATTTCTCTAATTTTCCAACTAGAGGAAGAGAAACTTGTGGAAAAGTTCTTTTT
 561 TTTTCTTTTTTTTTTCTTAAAGAAGGGCAGCCAAGGTAGTAACCTAAAAATAGTGCCCAGGCATATGAGAGTTGTCCTAC
 641 GAGGTTAAAGAACACACTGTTCCACTGTATGGCTTTGGCCCTGAGTGGCCAGGGAGGTCAACTTGACCCTGCCATGTTGG
 721 TTTGACTTACTAAGACACAGGAATCACTGTTTTCCTTGACCAGGGTCTCACACCCTGGAGGAATGTTAAGTAAGAGAAAG
 801 AACCTCTTTCCTGAATATTGACATGTAAAAGACCAAAGTAATTTTTCTGAACTTCTGCAATTCTGAGAACTCTCCAAGGA
 881 ATTTACAGTGATTTTAGTGCTTGTCAGCATTTTTCCATGAGGACTTTCATACATTTGACTCTTTAGTTCACAGGTTCCCA
 961 TTGATTGTGAGCAAGATATTTATCTCTTTAGCCCTTGGGGATCCAGCTGAGAGCAATCTCTTGCATTTTTTTACCCGTGT
1041 ATGTACAGATATCATTTCTTGTGTATGCCATGACTTGAAAAAGTTTGGGAAGCTCTTTAGCAATATCAGCTAAAAGGATA
1121 TGAAATCACAGGTGATAGCAGTTGTCATTCAGTAATTTCCTACAAGCAGCACCCCAAAGGAAATATAGTCCTAATCTTTA
1201 CTATCCACTTCTAAATTTAATGTGAATTTCATACATGTTATTAGTTGTTTTCTTTATAATTTTATAAAAATTATTCATCG
1281 GGAGTTTAACTTCCACTTCCATGCTATCGGATGTGTTGGGCTCCATGCAAGAACTTGGAAGAAAAACAGGCAGGAATGCA
1361 TTTGCATAATGACCCAGATCATCATTTTCTGCAACTGAGAATTATATTTCATCATTGCTTCTAGAAGTCTGCAATTCTTT
1441 ACTTTTCTTTGGTGCATTATTATCTAGGTGCCATCACTGGATAATGTGGAGTGACTAGAGAAGTCACATATCACTGTAAG
1521 GTACAGTTAGGGTAACACTTTAGAGGTTTATTATTTTTAAAAAACTTTTCTTGAACTCCTGGCCAACATGGTGAAACCCC
1601 GTCTCTACTAAAAATACCAAAATTAGCCAGGCGTGATGGTGGGCGCCTGTAATCTCAGCTACTTGGGAGGCTGAAGCAGG
1681 AGAACTGCCTGAACCCAGGAGGCAGAGGTTGCGGTGAGTCGAGATCGTGCTACTACTGCCTGGGTGGCAAGGGTGAGACT
1761 CCATCTCAAAAAAGAAACAAAAAAACCCAAAAAGTTTTCTTTACTGTTGGTTAAAAAAAAAAGCCAGACCATAGTTTGAC
1841 TGGTGGCATGGAATTTGTGTATCAAATAAATGCATTTGCTTATTTGACAAACCATCAGTGTCCACTATTTGTTACCAGAG
1921 TTGGGCCACTATCTTTTAAAATTGCTGGTGAAAACTTGCCACTAGATGGCAGTGCCTGTATAGATGGGGAAAAAATTGCC
2001 ACCATTCTTGGTATAATACAGTGTAGCTTAGATGAGGTGGTGAAATAGGGGTATCAGCCGAATATTCCTAATATAGTTTC
2081 TCTTGAATTAATAAACTGAAGATTTGTAGGAAAATGAGTGAGCAAAATTTGTTTACTGTTGTGAATTTTTCCTACAGCAC
2161 TGTTTTTAATCTTGATGTTTTCCAACTTTCTGTACTAATAGATACATTTCTGTGCATAAGATTATAAAGCATATACTCAC
2241 AGTTCAGTAGTTTTCGTTAAGGATTTACTGTGTGAGTACTTTACTGTGAGGAATTGCAGAACCTTTTCCCCTCTACTCTT
2321 GTCTAAAAGTTCTGTGTGGCACACAGAGATGCGACCTACTCAATCTGACTTAGTAAAACCATGCTGTAGAATTTTTGTCT
2401 TAAAAAGACCACATACCCAGCACCCATGAAATAAAAGATTCATCTGTAATTGGGATTCAAAGTGATTAAATTCCTTTGTT
2481 CATACTCATAAATAGCACTAAAGTGTTATAACATTTTCATTTACCTATTTTTAGTTCCTTCATTTTAACTTAATAAAAAT
2561 CTTGGATTGATATTCTTTTTTTTTTTTTTTTTTTTTTGAGACAGCGTCTCGCTCTGTCACCCAGGCTGGAGTACAGTGGC
2641 TCTATCTTGGCTCACTGCGAGCTCCGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTGCCGAGTAGCTGGGACTAC
2721 AGGCGCCCGCCACCACACCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCCTGTTAGCCAGGATGGTCT
2801 CGATCTCCTGACCTCGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGAATTACAGGCGTGAGCCACCGCGCCCGGCCT
2881 AGATTGATATTCTTAAGCAATAAAAGTTTACTGGTTGTCCTATTTGCCATATTATTGAAACTTGGAAAGGATAATTTGAA
2961 ACAAGGTTTGAAGTTAACTGAAATATGGAGATTGAATTTATACTCAATTCTTGTGAAAAGTCTTGCTTAATAAGTATGAT
3041 TAAACTTTGCTTCTTAAAATTTGTATTTTCCCTACACTTCTTTATAAGAATCCTATGATGAAGTACGTAATCTTTATTAT
3121 ATTATTTTACATTAACCATCTTTTTTTTCAAATTGTTTTATTTTTTATTTTACTTTAAGTTCTGGGATACATGTGCTGAC
3201 CATGCAGGTTTGGTACATATGTATACATGTAACCATCATTTTAATATCTCACACATGTAAATGCACATCTTTGTAGTTAC
3281 CAATCAAATGTATGTGAGGCAATGAAAGGCATTGAGCAGTTACAGTAAAGGGCAGACATCAGGCCTCTGCCAGTATGTAC
3361 CTGCTGTGCCTTCCTGCCTGCCCTATTTCTTTGTTTTCAGTGTGCATGCCAGTCACTGCTGCTTCTGGAGACAGGATGGA
3441 AGGATACATGTATGTGTACATTTATGGAGAAAACCAATTTATAGATGTATCAGAGCTCTAAGGGATTCTCTTTCACTTCC
3521 TTGGGACTCCCAAGCAGAGGAATTAATAGATTAGGAGGGTCTTTTGGGGGGTTGGTTTAAATTTTCAGGGCGATAGAGGC
3601 TAACTTCTCGTTGGCCTTCATGAATTTTCAATATATCATCTTTTCGCTGAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' caggGUUCUCGGAC-UGAACACu 5'
              |||| |::|| |:||||| 
Target 5' tttaCAAGTGTTTGAATTTGTGa 3'
457 - 479 150.00 -17.80
2
miRNA  3' cagggUUCUCGGACUGAACACu 5'
               |||||    ||||||| 
Target 5' agaggAAGAG--AAACTTGTGg 3'
528 - 547 149.00 -14.10
3
miRNA  3' cagGGUUCUCGGAC--UGAACACu 5'
             |::: :|| ||  |:||||| 
Target 5' tgaCTGGTGGCATGGAATTTGTGt 3'
1837 - 1860 137.00 -9.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30502824 7 COSMIC
COSN20713997 8 COSMIC
COSN26997003 16 COSMIC
COSN31584225 17 COSMIC
COSN30469136 20 COSMIC
COSN30151568 42 COSMIC
COSN30463097 43 COSMIC
COSN30125141 55 COSMIC
COSN23016247 63 COSMIC
COSN31567200 109 COSMIC
COSN30533719 140 COSMIC
COSN32062730 150 COSMIC
COSN28200945 327 COSMIC
COSN9002103 384 COSMIC
COSN15660338 475 COSMIC
COSN23387732 525 COSMIC
COSN20099326 555 COSMIC
COSN29335453 847 COSMIC
COSN20099325 891 COSMIC
COSN17182086 938 COSMIC
COSN29551886 1025 COSMIC
COSN14439672 1337 COSMIC
COSN20090927 1377 COSMIC
COSN5524727 1396 COSMIC
COSN7827772 1540 COSMIC
COSN27313186 1813 COSMIC
COSN17182049 1843 COSMIC
COSN9138503 1911 COSMIC
COSN20099323 2030 COSMIC
COSN6572177 2152 COSMIC
COSN32061810 2153 COSMIC
COSN22559927 2245 COSMIC
COSN1270374 2492 COSMIC
COSN21506243 2521 COSMIC
COSN17488658 2575 COSMIC
COSN20719090 2962 COSMIC
COSN20302401 3005 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs760967767 2 dbSNP
rs775509590 5 dbSNP
rs772261674 6 dbSNP
rs1337927165 14 dbSNP
rs1297374301 17 dbSNP
rs372250057 18 dbSNP
rs1396350855 21 dbSNP
rs779443927 29 dbSNP
rs771396058 30 dbSNP
rs749753124 32 dbSNP
rs957293595 34 dbSNP
rs1172870229 38 dbSNP
rs1246121758 39 dbSNP
rs773423799 39 dbSNP
rs1448291785 40 dbSNP
rs778131495 42 dbSNP
rs1423127471 44 dbSNP
rs1189136799 48 dbSNP
rs59212885 63 dbSNP
rs1464210466 64 dbSNP
rs916118039 71 dbSNP
rs1171661511 78 dbSNP
rs921808743 85 dbSNP
rs111258639 87 dbSNP
rs1323067765 90 dbSNP
rs1363623819 91 dbSNP
rs1435091010 95 dbSNP
rs1302027449 97 dbSNP
rs1332961175 99 dbSNP
rs1255664437 102 dbSNP
rs1018738478 121 dbSNP
rs578194007 121 dbSNP
rs1266077199 122 dbSNP
rs1464384726 139 dbSNP
rs777367137 140 dbSNP
rs1268779994 144 dbSNP
rs1326027987 149 dbSNP
rs938808576 150 dbSNP
rs1197635750 157 dbSNP
rs1276959198 158 dbSNP
rs144860094 158 dbSNP
rs1364030754 159 dbSNP
rs201753999 164 dbSNP
rs76422981 164 dbSNP
rs1284311771 165 dbSNP
rs372009339 172 dbSNP
rs1161815137 174 dbSNP
rs1386955910 202 dbSNP
rs1457158643 213 dbSNP
rs554599777 215 dbSNP
rs189158437 216 dbSNP
rs1385165785 220 dbSNP
rs748307697 221 dbSNP
rs558774669 236 dbSNP
rs1351326158 245 dbSNP
rs781526696 254 dbSNP
rs372802667 266 dbSNP
rs1286195152 271 dbSNP
rs755077901 287 dbSNP
rs1328247395 293 dbSNP
rs973015219 314 dbSNP
rs1222162583 315 dbSNP
rs995593414 316 dbSNP
rs1330187656 324 dbSNP
rs186598830 325 dbSNP
rs1017901195 327 dbSNP
rs568446285 329 dbSNP
rs1483813083 330 dbSNP
rs751649493 336 dbSNP
rs547130077 338 dbSNP
rs772509483 340 dbSNP
rs528565562 345 dbSNP
rs954824848 347 dbSNP
rs564704268 355 dbSNP
rs1030163647 363 dbSNP
rs1370719742 366 dbSNP
rs998710070 371 dbSNP
rs553496873 379 dbSNP
rs534935082 380 dbSNP
rs1371290088 381 dbSNP
rs1055963695 384 dbSNP
rs1306433587 394 dbSNP
rs1011558518 397 dbSNP
rs1228686925 405 dbSNP
rs894477878 406 dbSNP
rs1319845242 415 dbSNP
rs1422920291 416 dbSNP
rs907180364 417 dbSNP
rs1343711850 418 dbSNP
rs1056415451 431 dbSNP
rs1206337034 433 dbSNP
rs1480480175 436 dbSNP
rs751004766 451 dbSNP
rs1045843766 455 dbSNP
rs62285084 456 dbSNP
rs907486944 466 dbSNP
rs765503294 472 dbSNP
rs1164752570 483 dbSNP
rs1390820443 490 dbSNP
rs946136956 491 dbSNP
rs552453904 492 dbSNP
rs1370170704 495 dbSNP
rs748514927 496 dbSNP
rs762284652 503 dbSNP
rs930158982 516 dbSNP
rs1197049423 526 dbSNP
rs1376764179 528 dbSNP
rs1063084 537 dbSNP
rs918983926 545 dbSNP
rs1298285805 554 dbSNP
rs1462821511 556 dbSNP
rs62285083 556 dbSNP
rs913296389 561 dbSNP
rs1054294845 563 dbSNP
rs147355142 565 dbSNP
rs201862950 565 dbSNP
rs371929604 565 dbSNP
rs563871321 566 dbSNP
rs776272229 566 dbSNP
rs1258115684 568 dbSNP
rs774971406 570 dbSNP
rs1183444406 575 dbSNP
rs1203411038 575 dbSNP
rs1063085 576 dbSNP
rs1249203598 576 dbSNP
rs1451939279 576 dbSNP
rs138425900 579 dbSNP
rs369147993 579 dbSNP
rs1309735518 580 dbSNP
rs1178530197 585 dbSNP
rs1224969166 587 dbSNP
rs1357176069 614 dbSNP
rs935787219 619 dbSNP
rs921881521 623 dbSNP
rs1367256880 625 dbSNP
rs1432894533 632 dbSNP
rs941658865 640 dbSNP
rs774789987 641 dbSNP
rs1367756817 649 dbSNP
rs975065145 650 dbSNP
rs965767503 655 dbSNP
rs1310749161 664 dbSNP
rs1203419221 665 dbSNP
rs1269235018 666 dbSNP
rs911558042 670 dbSNP
rs1207440041 673 dbSNP
rs542094524 674 dbSNP
rs910213357 675 dbSNP
rs555938975 678 dbSNP
rs1478413267 688 dbSNP
rs574112347 701 dbSNP
rs950472508 705 dbSNP
rs954630404 710 dbSNP
rs1030280360 711 dbSNP
rs1159627861 714 dbSNP
rs977221476 720 dbSNP
rs6768485 725 dbSNP
rs537441567 728 dbSNP
rs1349916023 732 dbSNP
rs775773420 740 dbSNP
rs1510277 747 dbSNP
rs894585951 755 dbSNP
rs1366462946 756 dbSNP
rs1228667657 758 dbSNP
rs1289347103 761 dbSNP
rs551810677 764 dbSNP
rs1459371318 767 dbSNP
rs1419588504 779 dbSNP
rs1379834302 788 dbSNP
rs71310479 790 dbSNP
rs1223852643 797 dbSNP
rs1002181354 802 dbSNP
rs1003314808 810 dbSNP
rs1490238963 815 dbSNP
rs1446725969 820 dbSNP
rs181770911 824 dbSNP
rs1413841822 845 dbSNP
rs1471506597 857 dbSNP
rs1157866972 858 dbSNP
rs1414427748 871 dbSNP
rs1024747347 873 dbSNP
rs1320978572 874 dbSNP
rs1364460523 876 dbSNP
rs1010199443 893 dbSNP
rs71141714 896 dbSNP
rs1309503426 903 dbSNP
rs1047322188 918 dbSNP
rs190494092 929 dbSNP
rs185667653 932 dbSNP
rs898677476 933 dbSNP
rs1038539180 938 dbSNP
rs1357670998 944 dbSNP
rs1230574894 945 dbSNP
rs1287786135 951 dbSNP
rs576165838 954 dbSNP
rs1316837839 955 dbSNP
rs1038834835 963 dbSNP
rs1206090907 969 dbSNP
rs941789968 972 dbSNP
rs1418162756 973 dbSNP
rs1284733764 976 dbSNP
rs1482228730 979 dbSNP
rs1180816651 980 dbSNP
rs1237883192 986 dbSNP
rs944637370 994 dbSNP
rs770435349 1000 dbSNP
rs911772655 1003 dbSNP
rs1395256495 1012 dbSNP
rs180980238 1016 dbSNP
rs1368307235 1023 dbSNP
rs985799628 1023 dbSNP
rs3773714 1026 dbSNP
rs928965820 1027 dbSNP
rs1313595441 1033 dbSNP
rs1450753318 1033 dbSNP
rs920384100 1033 dbSNP
rs372827869 1036 dbSNP
rs1454284508 1037 dbSNP
rs1340261975 1039 dbSNP
rs1359802128 1043 dbSNP
rs1195494830 1045 dbSNP
rs536515012 1047 dbSNP
rs962879696 1050 dbSNP
rs568485541 1052 dbSNP
rs1386098056 1060 dbSNP
rs546966646 1061 dbSNP
rs1450074483 1062 dbSNP
rs1164274739 1063 dbSNP
rs967168646 1064 dbSNP
rs1021460188 1065 dbSNP
rs1172823184 1070 dbSNP
rs1403307704 1077 dbSNP
rs1416524266 1090 dbSNP
rs571113724 1098 dbSNP
rs958799736 1105 dbSNP
rs972060278 1114 dbSNP
rs1299891412 1117 dbSNP
rs1187438377 1118 dbSNP
rs1024528506 1122 dbSNP
rs1488276795 1126 dbSNP
rs1010689301 1132 dbSNP
rs187979586 1138 dbSNP
rs1459399798 1139 dbSNP
rs1262348708 1140 dbSNP
rs528307543 1151 dbSNP
rs1465269562 1158 dbSNP
rs1210573636 1174 dbSNP
rs1245614847 1176 dbSNP
rs762798275 1183 dbSNP
rs1213836220 1186 dbSNP
rs1199050670 1188 dbSNP
rs1034861673 1203 dbSNP
rs375719329 1206 dbSNP
rs1033121307 1210 dbSNP
rs1174687967 1211 dbSNP
rs907216116 1211 dbSNP
rs1458183364 1218 dbSNP
rs1323170789 1232 dbSNP
rs900561779 1237 dbSNP
rs1381732117 1239 dbSNP
rs1243701644 1243 dbSNP
rs1025819530 1252 dbSNP
rs570896847 1253 dbSNP
rs994372998 1260 dbSNP
rs552636142 1266 dbSNP
rs1038486475 1271 dbSNP
rs531038874 1274 dbSNP
rs1329636762 1276 dbSNP
rs888840456 1276 dbSNP
rs144273142 1279 dbSNP
rs1485227560 1280 dbSNP
rs1209901550 1281 dbSNP
rs867264337 1282 dbSNP
rs928997036 1286 dbSNP
rs1198267287 1289 dbSNP
rs922939507 1299 dbSNP
rs183988063 1301 dbSNP
rs1406859136 1302 dbSNP
rs1366336658 1306 dbSNP
rs1162729645 1308 dbSNP
rs773261132 1309 dbSNP
rs756189722 1315 dbSNP
rs745984078 1321 dbSNP
rs530283526 1323 dbSNP
rs958805918 1328 dbSNP
rs558933581 1333 dbSNP
rs1403283842 1336 dbSNP
rs1302815893 1337 dbSNP
rs1350816000 1338 dbSNP
rs1422129413 1341 dbSNP
rs1304679187 1354 dbSNP
rs777753495 1365 dbSNP
rs926353736 1366 dbSNP
rs1245489540 1367 dbSNP
rs1266641630 1374 dbSNP
rs748016651 1377 dbSNP
rs971489981 1378 dbSNP
rs980685981 1381 dbSNP
rs1252104326 1383 dbSNP
rs1490656194 1394 dbSNP
rs1483864736 1398 dbSNP
rs1267489443 1405 dbSNP
rs1025598785 1413 dbSNP
rs1487314877 1416 dbSNP
rs1252662102 1426 dbSNP
rs1219014747 1441 dbSNP
rs1370226527 1443 dbSNP
rs1422831951 1444 dbSNP
rs994154438 1446 dbSNP
rs781164632 1447 dbSNP
rs1017614939 1451 dbSNP
rs1007033572 1452 dbSNP
rs1431935853 1453 dbSNP
rs1276052743 1456 dbSNP
rs1225347409 1463 dbSNP
rs1296215430 1465 dbSNP
rs540668232 1467 dbSNP
rs889952238 1473 dbSNP
rs1050147074 1481 dbSNP
rs768941891 1486 dbSNP
rs1314772304 1488 dbSNP
rs997258443 1491 dbSNP
rs1244582820 1497 dbSNP
rs8665 1507 dbSNP
rs1041385626 1508 dbSNP
rs758400359 1511 dbSNP
rs1249927756 1516 dbSNP
rs956056391 1518 dbSNP
rs113495405 1521 dbSNP
rs1245531755 1530 dbSNP
rs1054783431 1531 dbSNP
rs1183061097 1532 dbSNP
rs937157962 1535 dbSNP
rs191578397 1541 dbSNP
rs750870977 1545 dbSNP
rs981338791 1559 dbSNP
rs971437789 1560 dbSNP
rs965163234 1564 dbSNP
rs1466372914 1566 dbSNP
rs1017679510 1568 dbSNP
rs1403809747 1576 dbSNP
rs1451874248 1579 dbSNP
rs1046618 1585 dbSNP
rs1046619 1586 dbSNP
rs373769173 1587 dbSNP
rs918703430 1588 dbSNP
rs972677080 1591 dbSNP
rs1377513776 1593 dbSNP
rs1307224936 1597 dbSNP
rs534596014 1600 dbSNP
rs371272612 1608 dbSNP
rs139521455 1610 dbSNP
rs1252246498 1614 dbSNP
rs1203607767 1616 dbSNP
rs1198946593 1617 dbSNP
rs1486890564 1620 dbSNP
rs1184938873 1625 dbSNP
rs536551305 1627 dbSNP
rs1129091 1629 dbSNP
rs1434049067 1631 dbSNP
rs1457038870 1632 dbSNP
rs1048137323 1633 dbSNP
rs1255958927 1635 dbSNP
rs572326971 1636 dbSNP
rs1321176539 1639 dbSNP
rs1017145831 1643 dbSNP
rs1129094 1644 dbSNP
rs1274134916 1645 dbSNP
rs1129097 1651 dbSNP
rs1129099 1652 dbSNP
rs1285528483 1654 dbSNP
rs1321889364 1657 dbSNP
rs534756186 1658 dbSNP
rs1129103 1661 dbSNP
rs998378084 1662 dbSNP
rs937645987 1664 dbSNP
rs1213729316 1665 dbSNP
rs1241635766 1671 dbSNP
rs1488915718 1673 dbSNP
rs1201890739 1675 dbSNP
rs926401406 1685 dbSNP
rs879157323 1686 dbSNP
rs188732014 1689 dbSNP
rs754178284 1691 dbSNP
rs1129104 1693 dbSNP
rs1479990848 1694 dbSNP
rs1129105 1697 dbSNP
rs1410058110 1700 dbSNP
rs1129107 1704 dbSNP
rs1129109 1713 dbSNP
rs1009867410 1715 dbSNP
rs1339132403 1720 dbSNP
rs1470485818 1721 dbSNP
rs537525150 1726 dbSNP
rs533655560 1727 dbSNP
rs1404702758 1733 dbSNP
rs917413716 1739 dbSNP
rs1353429873 1753 dbSNP
rs548335711 1755 dbSNP
rs1283592449 1758 dbSNP
rs759126625 1759 dbSNP
rs1224919387 1763 dbSNP
rs1322440050 1763 dbSNP
rs1045964200 1767 dbSNP
rs1289883033 1769 dbSNP
rs1490265615 1774 dbSNP
rs751283347 1783 dbSNP
rs1182629116 1786 dbSNP
rs1402125670 1786 dbSNP
rs1225239890 1791 dbSNP
rs1171277707 1797 dbSNP
rs1468518426 1805 dbSNP
rs6764992 1814 dbSNP
rs868118242 1822 dbSNP
rs1413799191 1823 dbSNP
rs796812283 1823 dbSNP
rs1161190086 1825 dbSNP
rs1364567282 1833 dbSNP
rs972792918 1835 dbSNP
rs941329232 1840 dbSNP
rs185313969 1842 dbSNP
rs1279495394 1843 dbSNP
rs1379912461 1852 dbSNP
rs762575106 1857 dbSNP
rs1248247334 1866 dbSNP
rs1289771700 1878 dbSNP
rs1358962260 1883 dbSNP
rs566080312 1889 dbSNP
rs926157613 1898 dbSNP
rs1435869117 1903 dbSNP
rs985516594 1913 dbSNP
rs1185227901 1916 dbSNP
rs954421655 1920 dbSNP
rs1442732694 1927 dbSNP
rs547665066 1929 dbSNP
rs1029942887 1931 dbSNP
rs1446439516 1936 dbSNP
rs976889570 1943 dbSNP
rs532048005 1945 dbSNP
rs1352720199 1959 dbSNP
rs1384122941 1959 dbSNP
rs966870986 1964 dbSNP
rs1286894600 1977 dbSNP
rs932688393 1977 dbSNP
rs1408587229 1979 dbSNP
rs1328672492 1986 dbSNP
rs1008969938 1995 dbSNP
rs1239455596 1996 dbSNP
rs1312987972 1997 dbSNP
rs1020012377 2003 dbSNP
rs954928919 2015 dbSNP
rs776459019 2016 dbSNP
rs1375000161 2019 dbSNP
rs1382158307 2019 dbSNP
rs150496722 2020 dbSNP
rs892927275 2022 dbSNP
rs1449229009 2030 dbSNP
rs200179482 2032 dbSNP
rs1279114051 2033 dbSNP
rs1033074799 2034 dbSNP
rs1462577723 2040 dbSNP
rs1438633133 2046 dbSNP
rs1332599386 2048 dbSNP
rs899096492 2049 dbSNP
rs1241941415 2051 dbSNP
rs1037576001 2056 dbSNP
rs1001239392 2059 dbSNP
rs543172022 2060 dbSNP
rs1474916867 2064 dbSNP
rs1046602116 2065 dbSNP
rs531386821 2073 dbSNP
rs1045639591 2074 dbSNP
rs1165150397 2078 dbSNP
rs1382833193 2092 dbSNP
rs1320442348 2096 dbSNP
rs949845985 2099 dbSNP
rs1324874425 2106 dbSNP
rs193069478 2113 dbSNP
rs1227029898 2122 dbSNP
rs949179704 2123 dbSNP
rs1236723098 2124 dbSNP
rs1221538763 2128 dbSNP
rs1262450036 2134 dbSNP
rs1185113953 2137 dbSNP
rs913600745 2154 dbSNP
rs1053286080 2155 dbSNP
rs1448689130 2161 dbSNP
rs1446047365 2162 dbSNP
rs1263768404 2163 dbSNP
rs368961898 2164 dbSNP
rs3836408 2164 dbSNP
rs1270003208 2165 dbSNP
rs896999238 2167 dbSNP
rs767058036 2170 dbSNP
rs3773713 2175 dbSNP
rs572266066 2177 dbSNP
rs1160349281 2185 dbSNP
rs978989439 2189 dbSNP
rs1381821187 2192 dbSNP
rs554136125 2195 dbSNP
rs141626766 2198 dbSNP
rs577190463 2204 dbSNP
rs1282838371 2205 dbSNP
rs1230009307 2210 dbSNP
rs1341712636 2215 dbSNP
rs910566121 2219 dbSNP
rs1298051720 2224 dbSNP
rs987853394 2234 dbSNP
rs1258386974 2235 dbSNP
rs1349373647 2236 dbSNP
rs1398682148 2245 dbSNP
rs1197670283 2246 dbSNP
rs1293469784 2246 dbSNP
rs954820391 2247 dbSNP
rs371884573 2253 dbSNP
rs776502254 2255 dbSNP
rs1453160196 2256 dbSNP
rs977010619 2258 dbSNP
rs1164360689 2265 dbSNP
rs1405643819 2267 dbSNP
rs543897811 2269 dbSNP
rs963180364 2275 dbSNP
rs576627818 2284 dbSNP
rs1021132708 2294 dbSNP
rs188967561 2302 dbSNP
rs1396978894 2318 dbSNP
rs868113448 2318 dbSNP
rs1304795168 2320 dbSNP
rs1335156350 2320 dbSNP
rs1002116560 2326 dbSNP
rs113138329 2327 dbSNP
rs1316582514 2328 dbSNP
rs1356793458 2333 dbSNP
rs537160050 2334 dbSNP
rs1032777823 2340 dbSNP
rs1424267278 2341 dbSNP
rs1192926054 2344 dbSNP
rs1024643234 2350 dbSNP
rs865828216 2352 dbSNP
rs969751225 2353 dbSNP
rs1439692696 2358 dbSNP
rs1024140182 2359 dbSNP
rs1487263662 2363 dbSNP
rs1387215631 2366 dbSNP
rs569856937 2369 dbSNP
rs1442958502 2377 dbSNP
rs1014116977 2386 dbSNP
rs1163214587 2392 dbSNP
rs1271188467 2399 dbSNP
rs1222364471 2402 dbSNP
rs1463347387 2402 dbSNP
rs1296300876 2404 dbSNP
rs1395640573 2408 dbSNP
rs897116812 2418 dbSNP
rs1338065990 2437 dbSNP
rs1453344620 2437 dbSNP
rs1451274763 2439 dbSNP
rs1287942742 2440 dbSNP
rs554642154 2454 dbSNP
rs536478053 2456 dbSNP
rs565921913 2460 dbSNP
rs6764265 2461 dbSNP
rs1308949208 2473 dbSNP
rs3210564 2475 dbSNP
rs747218988 2482 dbSNP
rs1250018321 2499 dbSNP
rs1457694568 2500 dbSNP
rs1049855683 2505 dbSNP
rs1043217640 2508 dbSNP
rs1460044552 2509 dbSNP
rs1181445141 2514 dbSNP
rs1347916249 2515 dbSNP
rs932611125 2523 dbSNP
rs1430556475 2525 dbSNP
rs1168028944 2527 dbSNP
rs1372308164 2539 dbSNP
rs943652612 2540 dbSNP
rs539474382 2541 dbSNP
rs1348951721 2542 dbSNP
rs1451259681 2542 dbSNP
rs1289011209 2549 dbSNP
rs1363597923 2560 dbSNP
rs1321112248 2561 dbSNP
rs1293822219 2562 dbSNP
rs910756638 2563 dbSNP
rs922591050 2565 dbSNP
rs1041107339 2566 dbSNP
rs1466853793 2569 dbSNP
rs1400846857 2570 dbSNP
rs1169653195 2571 dbSNP
rs1476826587 2572 dbSNP
rs1322111201 2574 dbSNP
rs201421581 2575 dbSNP
rs1242822243 2576 dbSNP
rs1486942529 2576 dbSNP
rs386398336 2576 dbSNP
rs1491013647 2577 dbSNP
rs1477700978 2578 dbSNP
rs1245213597 2579 dbSNP
rs1206972924 2580 dbSNP
rs1178397460 2582 dbSNP
rs1458360266 2582 dbSNP
rs1427106838 2593 dbSNP
rs1413879904 2596 dbSNP
rs1159168287 2598 dbSNP
rs1219179672 2598 dbSNP
rs1285624817 2598 dbSNP
rs1287930800 2598 dbSNP
rs1297699844 2598 dbSNP
rs1318817142 2598 dbSNP
rs1340233348 2598 dbSNP
rs1344142522 2598 dbSNP
rs1346480157 2598 dbSNP
rs1405923514 2598 dbSNP
rs1451130201 2598 dbSNP
rs200264313 2598 dbSNP
rs751040914 2598 dbSNP
rs1181182654 2599 dbSNP
rs1365809201 2599 dbSNP
rs1416808921 2599 dbSNP
rs1491135649 2599 dbSNP
rs1417341852 2600 dbSNP
rs1254056257 2601 dbSNP
rs1436301102 2602 dbSNP
rs1257876483 2603 dbSNP
rs9856073 2605 dbSNP
rs1308670392 2606 dbSNP
rs1360411419 2607 dbSNP
rs1326325599 2610 dbSNP
rs371613803 2611 dbSNP
rs1279877932 2613 dbSNP
rs1450827669 2614 dbSNP
rs1205067888 2618 dbSNP
rs1234523089 2619 dbSNP
rs1219321089 2633 dbSNP
rs987498489 2635 dbSNP
rs945594347 2636 dbSNP
rs1272566304 2643 dbSNP
rs1448580444 2648 dbSNP
rs914186791 2653 dbSNP
rs1446037106 2658 dbSNP
rs1161284731 2659 dbSNP
rs1412000001 2662 dbSNP
rs989620860 2665 dbSNP
rs1037871548 2666 dbSNP
rs1356756320 2672 dbSNP
rs1445281794 2673 dbSNP
rs756609282 2675 dbSNP
rs1330449309 2677 dbSNP
rs1330705187 2678 dbSNP
rs1463829694 2680 dbSNP
rs1248364177 2681 dbSNP
rs1313208128 2682 dbSNP
rs1360832539 2684 dbSNP
rs958252197 2702 dbSNP
rs1490237914 2704 dbSNP
rs13068904 2705 dbSNP
rs1197966013 2709 dbSNP
rs1243145852 2719 dbSNP
rs979881775 2724 dbSNP
rs549707781 2725 dbSNP
rs373410779 2727 dbSNP
rs534812095 2728 dbSNP
rs1013898244 2729 dbSNP
rs961263018 2734 dbSNP
rs1015478581 2736 dbSNP
rs1005773652 2740 dbSNP
rs373809537 2741 dbSNP
rs34935024 2743 dbSNP
rs1050058137 2746 dbSNP
rs1332355555 2754 dbSNP
rs542720920 2757 dbSNP
rs1340068571 2762 dbSNP
rs183338876 2770 dbSNP
rs560353992 2771 dbSNP
rs1315838532 2774 dbSNP
rs1275948643 2775 dbSNP
rs1041052638 2781 dbSNP
rs945370885 2782 dbSNP
rs1354006077 2783 dbSNP
rs375868569 2784 dbSNP
rs1444323264 2785 dbSNP
rs1129125 2787 dbSNP
rs1194919425 2794 dbSNP
rs1244130561 2801 dbSNP
rs1354067213 2811 dbSNP
rs1477054985 2812 dbSNP
rs914130305 2815 dbSNP
rs1054040560 2816 dbSNP
rs892135091 2821 dbSNP
rs1030791035 2824 dbSNP
rs544978829 2831 dbSNP
rs903565831 2835 dbSNP
rs1338790052 2836 dbSNP
rs201446293 2836 dbSNP
rs1399157938 2840 dbSNP
rs548774659 2841 dbSNP
rs1347298227 2844 dbSNP
rs1379934581 2846 dbSNP
rs530487478 2849 dbSNP
rs981388834 2850 dbSNP
rs1302431814 2859 dbSNP
rs969763148 2860 dbSNP
rs1206470155 2865 dbSNP
rs1281683329 2868 dbSNP
rs141880726 2869 dbSNP
rs894755570 2870 dbSNP
rs1181614520 2871 dbSNP
rs138648697 2872 dbSNP
rs1015426333 2875 dbSNP
rs1218169782 2876 dbSNP
rs1160435571 2882 dbSNP
rs1358822497 2887 dbSNP
rs1419381081 2890 dbSNP
rs972002236 2891 dbSNP
rs1367247155 2896 dbSNP
rs984047476 2896 dbSNP
rs1300521813 2922 dbSNP
rs1488298621 2925 dbSNP
rs369009740 2926 dbSNP
rs952776623 2927 dbSNP
rs1028138766 2929 dbSNP
rs1306509423 2932 dbSNP
rs980660945 2935 dbSNP
rs756679048 2952 dbSNP
rs1323124078 2953 dbSNP
rs997111750 2956 dbSNP
rs1313188190 2963 dbSNP
rs1489686726 2965 dbSNP
rs543846408 2966 dbSNP
rs775760556 2975 dbSNP
rs1438969063 2976 dbSNP
rs1184065099 2979 dbSNP
rs1019727072 2986 dbSNP
rs1046666 2987 dbSNP
rs532829931 2991 dbSNP
rs781070528 2993 dbSNP
rs1164485287 2994 dbSNP
rs554678897 3001 dbSNP
rs936938720 3005 dbSNP
rs144792046 3010 dbSNP
rs1045224397 3017 dbSNP
rs1393122168 3020 dbSNP
rs1018427169 3028 dbSNP
rs1375564264 3030 dbSNP
rs1459682594 3031 dbSNP
rs949568819 3033 dbSNP
rs1369218861 3034 dbSNP
rs1316695680 3037 dbSNP
rs1319598563 3037 dbSNP
rs1243066730 3049 dbSNP
rs529106896 3050 dbSNP
rs1265286288 3059 dbSNP
rs879866387 3064 dbSNP
rs554292791 3067 dbSNP
rs1340606298 3069 dbSNP
rs1422359305 3073 dbSNP
rs1007749077 3074 dbSNP
rs992539345 3079 dbSNP
rs559993120 3083 dbSNP
rs1184342258 3084 dbSNP
rs1258492391 3085 dbSNP
rs35135842 3089 dbSNP
rs563349491 3091 dbSNP
rs1488246376 3095 dbSNP
rs1236269886 3096 dbSNP
rs878924733 3106 dbSNP
rs984216659 3107 dbSNP
rs1168479804 3108 dbSNP
rs1399526069 3110 dbSNP
rs997730024 3124 dbSNP
rs1202805319 3126 dbSNP
rs541317650 3128 dbSNP
rs1395106704 3135 dbSNP
rs1265596846 3139 dbSNP
rs1220578686 3141 dbSNP
rs1327421147 3142 dbSNP
rs1332489691 3149 dbSNP
rs1279856238 3151 dbSNP
rs1256691037 3152 dbSNP
rs1219219527 3153 dbSNP
rs1317877809 3154 dbSNP
rs1339728287 3155 dbSNP
rs898041172 3158 dbSNP
rs1388548250 3160 dbSNP
rs1391724832 3164 dbSNP
rs1382169572 3167 dbSNP
rs1478669725 3167 dbSNP
rs1293101450 3170 dbSNP
rs952645437 3173 dbSNP
rs1422827873 3178 dbSNP
rs1036337163 3180 dbSNP
rs1470297306 3180 dbSNP
rs778856803 3183 dbSNP
rs1028670908 3189 dbSNP
rs942025932 3190 dbSNP
rs1456571077 3193 dbSNP
rs1289110181 3194 dbSNP
rs1402990409 3202 dbSNP
rs1363698616 3215 dbSNP
rs1402201920 3217 dbSNP
rs909325050 3220 dbSNP
rs1045556154 3226 dbSNP
rs373708591 3233 dbSNP
rs1303412118 3236 dbSNP
rs1310544237 3242 dbSNP
rs1209573866 3249 dbSNP
rs975218480 3256 dbSNP
rs1489433894 3257 dbSNP
rs1214165309 3259 dbSNP
rs917752184 3267 dbSNP
rs991967098 3269 dbSNP
rs1192883554 3272 dbSNP
rs140571377 3287 dbSNP
rs1432068715 3290 dbSNP
rs1159244659 3300 dbSNP
rs923824819 3304 dbSNP
rs571946126 3312 dbSNP
rs1296672490 3315 dbSNP
rs1360290565 3316 dbSNP
rs1406043623 3316 dbSNP
rs1295822143 3323 dbSNP
rs1434340416 3330 dbSNP
rs967686478 3342 dbSNP
rs1267428120 3343 dbSNP
rs1018061875 3345 dbSNP
rs1238255097 3347 dbSNP
rs1284996346 3360 dbSNP
rs757728787 3384 dbSNP
rs1009649991 3389 dbSNP
rs1223556971 3393 dbSNP
rs892596154 3397 dbSNP
rs1488154265 3404 dbSNP
rs1007042224 3420 dbSNP
rs1381636162 3440 dbSNP
rs955114959 3448 dbSNP
rs1157704826 3449 dbSNP
rs1190342038 3450 dbSNP
rs1032327251 3454 dbSNP
rs1001304017 3456 dbSNP
rs1030917234 3460 dbSNP
rs189884990 3468 dbSNP
rs1045746626 3472 dbSNP
rs949516070 3475 dbSNP
rs896667390 3476 dbSNP
rs369172298 3481 dbSNP
rs756531834 3483 dbSNP
rs898113448 3484 dbSNP
rs1298754373 3485 dbSNP
rs35371674 3485 dbSNP
rs1036528344 3492 dbSNP
rs1379252679 3494 dbSNP
rs1444775020 3500 dbSNP
rs1308774229 3503 dbSNP
rs537867786 3519 dbSNP
rs754742456 3533 dbSNP
rs1287535462 3535 dbSNP
rs983774025 3540 dbSNP
rs1320982568 3548 dbSNP
rs1205137891 3557 dbSNP
rs1239424288 3559 dbSNP
rs143811292 3560 dbSNP
rs567255377 3564 dbSNP
rs921150309 3566 dbSNP
rs975333357 3567 dbSNP
rs1165308982 3570 dbSNP
rs1173386554 3572 dbSNP
rs1300674897 3572 dbSNP
rs1045039397 3573 dbSNP
rs1172041576 3591 dbSNP
rs948139590 3592 dbSNP
rs1464101863 3594 dbSNP
rs1330841945 3595 dbSNP
rs867018690 3596 dbSNP
rs896546008 3598 dbSNP
rs1056324369 3600 dbSNP
rs1450479191 3606 dbSNP
rs965325753 3609 dbSNP
rs1379367516 3610 dbSNP
rs751193399 3612 dbSNP
rs1259884951 3622 dbSNP
rs1316066589 3629 dbSNP
rs987998050 3631 dbSNP
rs1465372180 3633 dbSNP
rs1443722317 3639 dbSNP
rs753632310 3641 dbSNP
rs549113646 3645 dbSNP
rs956801290 3646 dbSNP
rs979340942 3648 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cagggUUCUCGGACUGAACAcu 5'
               |||||    ||||||  
Target 5' agaggAAGAG--AAACUUGU-- 3'
1 - 18
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000476217.1 | 3UTR | AGAGGAAGAGAAACUUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE21687 Ependynoma primary tumors -0.32 5.0e-3 -0.269 1.6e-2 64 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.475 8.2e-3 0.347 4.5e-2 25 Click to see details
GSE28544 Breast cancer -0.46 1.2e-2 -0.380 3.4e-2 24 Click to see details
GSE42095 Differentiated embryonic stem cells -0.373 4.0e-2 -0.175 2.1e-1 23 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.966 8.3e-2 1.000 5.0e-1 3 Click to see details
GSE28260 Renal cortex and medulla -0.393 9.2e-2 -0.330 1.4e-1 13 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.3 9.9e-2 0.209 1.9e-1 20 Click to see details
GSE17498 Multiple myeloma -0.185 1.3e-1 -0.188 1.2e-1 40 Click to see details
GSE21032 Prostate cancer -0.12 1.4e-1 -0.051 3.2e-1 83 Click to see details
GSE19350 CNS germ cell tumors 0.321 1.5e-1 0.229 2.4e-1 12 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.098 3.2e-1 -0.133 2.6e-1 25 Click to see details
GSE32688 Pancreatic cancer -0.085 3.2e-1 0.084 3.2e-1 32 Click to see details
GSE19536 Breast cancer 0.04 3.5e-1 -0.025 4.0e-1 100 Click to see details
GSE38226 Liver fibrosis -0.074 3.7e-1 0.084 3.6e-1 21 Click to see details
GSE26953 Aortic valvular endothelial cells -0.068 3.8e-1 -0.035 4.4e-1 24 Click to see details
GSE19783 ER+ ER+ breast cancer 0.014 4.8e-1 0.188 2.1e-1 20 Click to see details
GSE19783 ER- ER- breast cancer 0.002 4.9e-1 -0.085 2.3e-1 79 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
STAD -0.612 0 -0.617 0 32 Click to see details
KICH -0.363 0.04 -0.308 0.07 25 Click to see details
CHOL -0.591 0.05 -0.467 0.1 9 Click to see details
CESC -0.989 0.05 -1.000 0.5 3 Click to see details
HNSC -0.244 0.06 -0.319 0.02 42 Click to see details
PAAD 0.77 0.12 0.400 0.3 4 Click to see details
ESCA -0.394 0.12 -0.509 0.05 11 Click to see details
BLCA 0.264 0.14 0.364 0.07 18 Click to see details
LUAD -0.297 0.17 -0.217 0.25 12 Click to see details
LIHC -0.116 0.21 -0.154 0.15 49 Click to see details
KIRP 0.143 0.22 0.047 0.4 32 Click to see details
PCPG 0.482 0.34 0.500 0.33 3 Click to see details
LUSC 0.065 0.35 -0.016 0.46 38 Click to see details
THCA -0.048 0.36 -0.052 0.35 59 Click to see details
PRAD 0.046 0.38 0.130 0.18 50 Click to see details
COAD 0.131 0.38 0.190 0.33 8 Click to see details
UCEC -0.043 0.43 -0.102 0.34 19 Click to see details
KIRC 0.021 0.43 0.058 0.32 68 Click to see details
BRCA -0.008 0.47 -0.043 0.35 84 Click to see details
BRCA -0.008 0.47 -0.043 0.35 84 Click to see details
BRCA -0.008 0.47 -0.043 0.35 84 Click to see details
91 hsa-miR-125b-2-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT038624 HN1L Jupiter microtubule associated homolog 2 1 1
MIRT038625 KDELC2 KDEL motif containing 2 1 1
MIRT038626 ABHD15 abhydrolase domain containing 15 1 1
MIRT038627 PPP1R12C protein phosphatase 1 regulatory subunit 12C 1 1
MIRT038628 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 1 1
MIRT038629 ASH2L ASH2 like histone lysine methyltransferase complex subunit 1 1
MIRT038630 USP22 ubiquitin specific peptidase 22 1 1
MIRT038631 CSTB cystatin B 1 1
MIRT038632 SYT2 synaptotagmin 2 1 1
MIRT038633 NDUFS7 NADH:ubiquinone oxidoreductase core subunit S7 1 1
MIRT038634 MTA2 metastasis associated 1 family member 2 1 1
MIRT053086 IGF1R insulin like growth factor 1 receptor 3 1
MIRT055788 PLEKHA1 pleckstrin homology domain containing A1 2 12
MIRT061248 AMOTL1 angiomotin like 1 2 10
MIRT061649 BTG2 BTG anti-proliferation factor 2 2 6
MIRT079046 TNRC6C trinucleotide repeat containing 6C 2 4
MIRT084583 BCL2L11 BCL2 like 11 2 8
MIRT093523 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 2
MIRT097383 LHFPL2 LHFPL tetraspan subfamily member 2 2 4
MIRT098030 SOBP sine oculis binding protein homolog 2 2
MIRT186262 TCEB3 elongin A 2 2
MIRT187284 DAZAP2 DAZ associated protein 2 2 10
MIRT361113 LRRC1 leucine rich repeat containing 1 2 2
MIRT443585 FAM84B family with sequence similarity 84 member B 2 2
MIRT452249 TRAM1 translocation associated membrane protein 1 2 2
MIRT476289 GMFB glia maturation factor beta 2 8
MIRT483871 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT484250 ANK1 ankyrin 1 2 2
MIRT499251 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT502270 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 4
MIRT504652 RPL9 ribosomal protein L9 2 6
MIRT505210 UBN2 ubinuclein 2 2 6
MIRT512690 POP1 POP1 homolog, ribonuclease P/MRP subunit 2 2
MIRT517341 ZNF529 zinc finger protein 529 2 4
MIRT518946 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT520866 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521236 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT528324 GIGYF2 GRB10 interacting GYF protein 2 2 2
MIRT533297 USP46 ubiquitin specific peptidase 46 2 2
MIRT541024 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT544034 ERRFI1 ERBB receptor feedback inhibitor 1 2 2
MIRT547037 POGZ pogo transposable element derived with ZNF domain 2 2
MIRT556102 MOAP1 modulator of apoptosis 1 2 2
MIRT558320 DR1 down-regulator of transcription 1 2 2
MIRT558520 CSRNP3 cysteine and serine rich nuclear protein 3 2 2
MIRT566230 PTMA prothymosin, alpha 2 4
MIRT568437 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT570584 OTUD7B OTU deubiquitinase 7B 2 2
MIRT571384 JKAMP JNK1/MAPK8-associated membrane protein 2 2
MIRT572798 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT573864 C9orf78 chromosome 9 open reading frame 78 2 2
MIRT609930 SLC38A1 solute carrier family 38 member 1 2 4
MIRT610437 CSMD2 CUB and Sushi multiple domains 2 2 2
MIRT614407 MURC caveolae associated protein 4 2 2
MIRT618625 GREB1 growth regulation by estrogen in breast cancer 1 2 2
MIRT620605 SAP30 Sin3A associated protein 30 2 2
MIRT635313 FAM179A TOG array regulator of axonemal microtubules 2 2 2
MIRT635918 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638507 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT640597 TM9SF4 transmembrane 9 superfamily member 4 2 2
MIRT644066 IQCE IQ motif containing E 2 2
MIRT648287 TRAPPC2L trafficking protein particle complex 2 like 2 2
MIRT653089 SSR3 signal sequence receptor subunit 3 2 2
MIRT654651 PTAFR platelet activating factor receptor 2 2
MIRT658084 FOXR2 forkhead box R2 2 2
MIRT665306 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT665974 SYTL4 synaptotagmin like 4 2 2
MIRT674905 RASSF9 Ras association domain family member 9 2 2
MIRT680085 THAP1 THAP domain containing 1 2 2
MIRT681487 DIP2A disco interacting protein 2 homolog A 2 2
MIRT691243 DFNB59 pejvakin 2 2
MIRT692361 AGTRAP angiotensin II receptor associated protein 2 2
MIRT693034 MB21D1 Mab-21 domain containing 1 2 2
MIRT694478 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT696069 ZNF264 zinc finger protein 264 2 2
MIRT696579 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696759 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 2
MIRT697306 ZNF652 zinc finger protein 652 2 2
MIRT698736 STX12 syntaxin 12 2 2
MIRT701055 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT701197 OTUD3 OTU deubiquitinase 3 2 2
MIRT701334 NSD1 nuclear receptor binding SET domain protein 1 2 2
MIRT703617 FBXO45 F-box protein 45 2 2
MIRT708893 ZNF780A zinc finger protein 780A 2 2
MIRT711621 DGKH diacylglycerol kinase eta 2 2
MIRT713744 TMEM81 transmembrane protein 81 2 2
MIRT715060 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT719711 CD101 CD101 molecule 2 2
MIRT720293 DLGAP3 DLG associated protein 3 2 2
MIRT722605 CCDC152 coiled-coil domain containing 152 2 2
MIRT724565 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-125b-2 Ascorbate approved 54670067 Microarray Metastatic melanoma cell lines 25202679 2014 up-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-125b-2 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-125b-2 Methotrexate 126941 NSC740 approved resistant High Colorectal Adenocarcinoma cell line (HT-29)
hsa-mir-125b-2 Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia tissue
hsa-mir-125b-2 Doxorubicin 31703 NSC123127 approved sensitive Low Hepatocellular Carcinoma cell line (Huh-7, HLE, HuH1)
hsa-mir-125b-2 Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375)
hsa-mir-125b-2 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-125b-2 Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-125b-2 Topotecan 60699 NSC609699 approved resistant cell line (W1)
hsa-mir-125b-2 Vincristine 5978 approved resistant cell line (W1)
hsa-mir-125b-2 Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-mir-125b-2 Tamoxifen 2733525 NSC180973 approved resistant tissue (ER-positive breast cancer)
hsa-mir-125b-2 Tamoxifen 2733525 NSC180973 approved sensitive cell line (MCF7)
hsa-mir-125b-2 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-125b-2-3p Platinum 23939 resistant High Ovarian Cancer tissue
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved sensitive Low Cervical Cancer tissue
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (BGC823)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901)
hsa-miR-125b-2-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-125b-2-3p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-125b-2-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer tissue
hsa-miR-125b-2-3p Fluorouracil 3385 NSC19893 approved resistant High Gastric Cancer tissue
hsa-miR-125b-2-3p Cyclophosphamide + Doxorubicin + Vincristine + Prednisone + Rituximab resistant High Diffuse Large B-Cell Lymphoma cell line (SU-DHL-2)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901, BGC-823)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant High Lung Adenocarcinoma cell line (A549)
hsa-miR-125b-2-3p Oxaliplatin 6857599 NSC266046 approved sensitive Low Colorectal Cancer cell line (HCT8, HCT-116)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780)
hsa-miR-125b-2-3p Antiepileptic Drug sensitive High Pediatric Epilepsy tissue
hsa-miR-125b-2-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-125b-2-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-125b-2-3p 4-Hydroxytamoxifen+Tamoxifen resistant cell line (LY2)
hsa-miR-125b-2-3p Ethanol+Tamoxifen resistant cell line (LY2)
hsa-miR-125b-2-3p Methotrexate 126941 NSC740 approved resistant cell line (HT29)
hsa-miR-125b-2-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-125b-2-3p Oxaliplatin 6857599 NSC266046 approved resistant cell line (IGROV-1)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (IGROV-1)
hsa-miR-125b-2-3p Paclitaxel 36314 NSC125973 approved resistant cell line (PC3PR70)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-125b-2-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-125b-2-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)
hsa-miR-125b-2-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (SGC-7901)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (BGC-823)

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