pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SRPK2   
Synonyms SFRSK2
Description SRSF protein kinase 2
Transcript NM_182691   
Other Transcripts NM_182692   
Expression
Putative miRNA Targets on SRPK2
3'UTR of SRPK2
(miRNA target sites are highlighted)
>SRPK2|NM_182691|3'UTR
   1 CAAATTCTACCAATATTGCATTCTGAGCTAGCAAATGTTCCCAGTACATTGGACCTAAACGGTGACTCTCATTCTTTAAC
  81 AGGATTACAAGTGAGCTGGCTTCATCCTCAGACCTTTATTTTGCTTTGAGGTACTGTTGTTTGACATTTTGCTTTTTGTG
 161 CACTGTGATCCTGGGGAAGGGTAGTCTTTTGTCTTCAGCTAAGTAGTTTACTGACCATTTTCTTCTGGAAACAATAACAT
 241 GTCTCTAAGCATTGTTTCTTGTGTTGTGTGACATTCAAATGTCATTTTTTTGAATGAAAAATACTTTCCCCTTTGTGTTT
 321 TGGCAGGTTTTGTAACTATTTATGAAGAAATATTTTAGCTGAGTACTATATAATTTACAATCTTAAGAAATTATCAAGTT
 401 GGAACCAAGAAATAGCAAGGAAATGTACAATTTTATCTTCTGGCAAAGGGACATCATTCCTGTATTATAGTGTATGTAAA
 481 TGCACCCTGTAAATGTTACTTTCCATTAAATATGGGAGGGGGACTCAAATTTCAGAAAAGCTACCAAGTCTTGAGTGCTT
 561 TGTAGCCTATGTTGCATGTAGCGGACTTTAACTGCTCCAAGGAGTTGTGCAAACTTTTCATTCCATAACAGTCTTTTCAC
 641 ATTGGATTTTAAACAAAGTGGCTCTGGGTTATAAGATGTCATTCTCTATATGGCACTTTAAAGGAAGAAAAGATATGTTT
 721 CTCATTCTAAAATATGCATTATAATTTAGCAGTCCCATTTGTGATTTTGCATATTTTTAAAAGTACTTTTAAAGAAGAGC
 801 AATTTCCCTTTAAAAATGTGATGGCTCAGTACCATGTCATGTTGCCTCCTCTGGGCGCTGTAAGTTAAGCTCTACATAGA
 881 TTAAATTGGAGAAACGTGTTAATTGTGTGGAATGAAAAAATACATATATTTTTGGAAAAGCATGATCATGCTTGTCTAGA
 961 ACACAAGGTATGGTATATACAATTTGCAGTGCAGTGGGCAGAATACTTCTCACAGCTCAAAGATAACAGTGATCACATTC
1041 ATTCCATAGGTAGCTTTACGTGTGGCTACAACAAATTTTACTAGCTTTTTCATTGTCTTTCCATGAAACGAAGTTGAGAA
1121 AATGATTTTCCCTTTGCAGGTTGCACACAGTTTTGTTTATGCATTTCCTTAAAATTAATTGTAGACTCCAGGATACAAAC
1201 CATAGTAGGCAATACAATTTTAGAATGTAATATATAGAGGTATATTTAGCCTCTTTTAGAAGTCAGTGGATTGAATGTCT
1281 TTTTATTTTAAATTTTACATTCATTAAGGTGCCTCGTTTTTGACTTTGTCCATTAACATTTATCCATATGCCTTTGCAAT
1361 AACTAGATTGTGAAAAGCTAACAAGTGTTGTAACAATAATCCATTGTTTGAGGTGCTTGCAGTTGTCTTAAAAATTAAAG
1441 TGTTTTGGTTTTTTTTTTTCCAGAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aggACCUA---CGUUUAAAAu 5'
             ||| |    |||||||| 
Target 5' gtgTGGCTACAACAAATTTTa 3'
1060 - 1080 147.00 -6.40
2
miRNA  3' aggaCCUACGUUUAAAau 5'
              |||  |||||||  
Target 5' agggGGACTCAAATTTca 3'
517 - 534 134.00 -6.10
3
miRNA  3' agGAC-CUA-CGUUUAAAAu 5'
            ||| | | |||||| || 
Target 5' ttCTGAGCTAGCAAATGTTc 3'
21 - 40 124.00 -5.06
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26669905 1 COSMIC
COSN30507392 14 COSMIC
COSN30530228 23 COSMIC
COSN2189974 35 COSMIC
COSN31593958 43 COSMIC
COSN510930 46 COSMIC
COSN31570692 66 COSMIC
COSN28164796 82 COSMIC
COSN26668490 114 COSMIC
COSN31578890 305 COSMIC
COSN22226610 364 COSMIC
COSN31545084 433 COSMIC
COSN7918783 453 COSMIC
COSN31548691 477 COSMIC
COSN31483125 553 COSMIC
COSN29356611 1047 COSMIC
COSN5642771 1157 COSMIC
COSN28656240 1191 COSMIC
COSN5642770 1221 COSMIC
COSN5642769 1228 COSMIC
COSN6342045 1251 COSMIC
COSN26555721 1279 COSMIC
COSN31579602 1305 COSMIC
COSN8783927 1312 COSMIC
COSN31569025 1319 COSMIC
COSN26666366 1416 COSMIC
COSN27297912 1448 COSMIC
COSN29049626 1448 COSMIC
rs6968355 35 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs756428084 2 dbSNP
rs748252519 3 dbSNP
rs1466512297 5 dbSNP
rs755355007 6 dbSNP
rs751928390 13 dbSNP
rs1240827442 15 dbSNP
rs766909732 16 dbSNP
rs1202815661 23 dbSNP
rs753365667 25 dbSNP
rs1275858290 29 dbSNP
rs193085999 31 dbSNP
rs1380129851 32 dbSNP
rs775075539 34 dbSNP
rs6968355 35 dbSNP
rs1381209886 37 dbSNP
rs1287844488 39 dbSNP
rs1465420284 44 dbSNP
rs1296351644 45 dbSNP
rs575512587 47 dbSNP
rs1313248470 48 dbSNP
rs776899494 48 dbSNP
rs373017445 49 dbSNP
rs1370929668 50 dbSNP
rs562080252 58 dbSNP
rs78695224 60 dbSNP
rs909541213 68 dbSNP
rs985099483 71 dbSNP
rs953757072 81 dbSNP
rs1029385862 83 dbSNP
rs1406675891 87 dbSNP
rs546101986 99 dbSNP
rs1238023571 104 dbSNP
rs1433674073 109 dbSNP
rs997946212 113 dbSNP
rs1178234765 130 dbSNP
rs1357201840 135 dbSNP
rs1351661210 140 dbSNP
rs759888264 142 dbSNP
rs1433806710 144 dbSNP
rs553295198 148 dbSNP
rs1308417354 149 dbSNP
rs763711867 152 dbSNP
rs539886485 153 dbSNP
rs1326745454 178 dbSNP
rs577288209 183 dbSNP
rs557371435 191 dbSNP
rs955886995 193 dbSNP
rs1297658549 207 dbSNP
rs1288311141 211 dbSNP
rs1031947391 214 dbSNP
rs1209721247 227 dbSNP
rs1000117008 228 dbSNP
rs1299888396 234 dbSNP
rs373408051 236 dbSNP
rs1229505765 241 dbSNP
rs1286041070 247 dbSNP
rs1241882887 251 dbSNP
rs568350122 253 dbSNP
rs548546854 259 dbSNP
rs534614006 261 dbSNP
rs1332801652 268 dbSNP
rs1057222978 270 dbSNP
rs1321540271 275 dbSNP
rs565825196 277 dbSNP
rs919429686 278 dbSNP
rs1428030090 281 dbSNP
rs1038309393 287 dbSNP
rs942262688 292 dbSNP
rs910806977 307 dbSNP
rs1291860339 310 dbSNP
rs1174699192 319 dbSNP
rs1436531535 326 dbSNP
rs565654497 332 dbSNP
rs764751262 338 dbSNP
rs1340569794 339 dbSNP
rs1245293173 344 dbSNP
rs985068382 345 dbSNP
rs1271783420 360 dbSNP
rs1321955314 367 dbSNP
rs1223078253 375 dbSNP
rs932332411 382 dbSNP
rs1244499794 383 dbSNP
rs1467958538 389 dbSNP
rs1198788263 391 dbSNP
rs1249656316 395 dbSNP
rs1448018804 396 dbSNP
rs1263363208 414 dbSNP
rs1218153138 426 dbSNP
rs370331210 429 dbSNP
rs922301338 430 dbSNP
rs976511997 437 dbSNP
rs759207745 446 dbSNP
rs1031497914 453 dbSNP
rs1458230499 457 dbSNP
rs979012661 461 dbSNP
rs552105584 466 dbSNP
rs767079142 468 dbSNP
rs761180867 472 dbSNP
rs1173186532 473 dbSNP
rs1012865022 475 dbSNP
rs1435754448 476 dbSNP
rs1229725369 479 dbSNP
rs1341038076 480 dbSNP
rs1270695110 484 dbSNP
rs1209260491 486 dbSNP
rs1300168236 492 dbSNP
rs1463491572 499 dbSNP
rs1192149237 513 dbSNP
rs532206670 521 dbSNP
rs1237858577 522 dbSNP
rs1473883472 539 dbSNP
rs569442720 545 dbSNP
rs895800265 548 dbSNP
rs1035731292 567 dbSNP
rs993587537 569 dbSNP
rs763318510 580 dbSNP
rs150775239 582 dbSNP
rs529681828 583 dbSNP
rs773638880 589 dbSNP
rs1449767086 600 dbSNP
rs1172360574 608 dbSNP
rs1291117212 612 dbSNP
rs562041268 614 dbSNP
rs1354441578 619 dbSNP
rs889338218 625 dbSNP
rs1289712736 629 dbSNP
rs1348389744 633 dbSNP
rs542463730 637 dbSNP
rs933599671 641 dbSNP
rs141316922 651 dbSNP
rs1256999602 659 dbSNP
rs976859396 661 dbSNP
rs559869198 666 dbSNP
rs934395072 667 dbSNP
rs546107634 668 dbSNP
rs1409911720 671 dbSNP
rs1470046477 671 dbSNP
rs1173741993 678 dbSNP
rs577252582 678 dbSNP
rs1413064851 679 dbSNP
rs576471604 681 dbSNP
rs1312656103 686 dbSNP
rs1374430616 688 dbSNP
rs1410074962 689 dbSNP
rs187906226 690 dbSNP
rs748126030 693 dbSNP
rs779027582 694 dbSNP
rs1333517201 704 dbSNP
rs1238230268 709 dbSNP
rs1275314814 715 dbSNP
rs968524048 735 dbSNP
rs768800497 739 dbSNP
rs1279374600 741 dbSNP
rs1189958898 744 dbSNP
rs1218403843 755 dbSNP
rs1318567994 760 dbSNP
rs1248502519 769 dbSNP
rs1437375631 771 dbSNP
rs1199687805 772 dbSNP
rs1248893925 780 dbSNP
rs1453145715 785 dbSNP
rs749520784 791 dbSNP
rs763505884 799 dbSNP
rs2073550 802 dbSNP
rs770255312 806 dbSNP
rs1170158564 812 dbSNP
rs1393900409 816 dbSNP
rs1035654146 819 dbSNP
rs182367097 823 dbSNP
rs1332708708 825 dbSNP
rs897880761 825 dbSNP
rs1450547022 827 dbSNP
rs148272976 836 dbSNP
rs373890662 838 dbSNP
rs1466444105 846 dbSNP
rs1249777461 847 dbSNP
rs1402861417 851 dbSNP
rs191516723 856 dbSNP
rs558698058 857 dbSNP
rs1269583586 859 dbSNP
rs187053688 860 dbSNP
rs1181923306 863 dbSNP
rs1473602834 873 dbSNP
rs1451661333 876 dbSNP
rs569405154 878 dbSNP
rs902105017 896 dbSNP
rs1461193250 898 dbSNP
rs752201255 900 dbSNP
rs200517662 905 dbSNP
rs1458061155 910 dbSNP
rs549512160 914 dbSNP
rs1259683792 918 dbSNP
rs1459805730 927 dbSNP
rs1040676885 942 dbSNP
rs934331746 944 dbSNP
rs866922866 951 dbSNP
rs1436924209 952 dbSNP
rs1293213385 958 dbSNP
rs1326021389 963 dbSNP
rs924327267 975 dbSNP
rs1267266596 976 dbSNP
rs1332850007 976 dbSNP
rs1213162181 977 dbSNP
rs534811958 978 dbSNP
rs147128823 980 dbSNP
rs1043187031 982 dbSNP
rs947155764 990 dbSNP
rs1196675007 995 dbSNP
rs1317215184 999 dbSNP
rs764777024 1003 dbSNP
rs1419374602 1007 dbSNP
rs915746799 1008 dbSNP
rs991324790 1009 dbSNP
rs959911253 1012 dbSNP
rs1455302133 1023 dbSNP
rs773787178 1029 dbSNP
rs928555768 1032 dbSNP
rs1384018351 1040 dbSNP
rs566883727 1045 dbSNP
rs1396820348 1054 dbSNP
rs1313609148 1057 dbSNP
rs547098568 1059 dbSNP
rs1377300278 1060 dbSNP
rs11545632 1061 dbSNP
rs1289096349 1067 dbSNP
rs1447735906 1069 dbSNP
rs962335083 1070 dbSNP
rs528758944 1072 dbSNP
rs1260503309 1073 dbSNP
rs1483817628 1081 dbSNP
rs1329648341 1088 dbSNP
rs1465613283 1097 dbSNP
rs1350951523 1102 dbSNP
rs1164909677 1103 dbSNP
rs559828816 1109 dbSNP
rs1406632899 1110 dbSNP
rs546369108 1113 dbSNP
rs1156916751 1117 dbSNP
rs1182609958 1122 dbSNP
rs1466303893 1126 dbSNP
rs532798755 1138 dbSNP
rs868159364 1139 dbSNP
rs1029077410 1142 dbSNP
rs1414451459 1144 dbSNP
rs1308682614 1146 dbSNP
rs1239846809 1149 dbSNP
rs1176535211 1150 dbSNP
rs1352478503 1151 dbSNP
rs879319256 1158 dbSNP
rs563872266 1161 dbSNP
rs902072473 1162 dbSNP
rs1235830153 1165 dbSNP
rs1278663174 1178 dbSNP
rs1345264816 1180 dbSNP
rs1209754934 1181 dbSNP
rs1251899152 1185 dbSNP
rs1481360219 1188 dbSNP
rs543895370 1193 dbSNP
rs999812728 1209 dbSNP
rs902842212 1213 dbSNP
rs1289169869 1217 dbSNP
rs1393088508 1221 dbSNP
rs1042769792 1222 dbSNP
rs143408236 1223 dbSNP
rs1169530343 1235 dbSNP
rs947082110 1237 dbSNP
rs762235980 1252 dbSNP
rs1379391618 1253 dbSNP
rs182626157 1257 dbSNP
rs1368859061 1261 dbSNP
rs1446467207 1265 dbSNP
rs1055608156 1270 dbSNP
rs1301658785 1271 dbSNP
rs1347692418 1276 dbSNP
rs938514277 1282 dbSNP
rs928511398 1284 dbSNP
rs1308927861 1285 dbSNP
rs1201767242 1291 dbSNP
rs1368695504 1302 dbSNP
rs1488751007 1306 dbSNP
rs972377648 1307 dbSNP
rs541097229 1312 dbSNP
rs962020170 1315 dbSNP
rs1347613883 1316 dbSNP
rs909201787 1316 dbSNP
rs1421865743 1324 dbSNP
rs984757792 1325 dbSNP
rs760984887 1327 dbSNP
rs1350580335 1332 dbSNP
rs1029044967 1335 dbSNP
rs190737015 1346 dbSNP
rs1162367603 1352 dbSNP
rs966600648 1354 dbSNP
rs558621774 1359 dbSNP
rs549217011 1363 dbSNP
rs538824857 1366 dbSNP
rs1156660779 1368 dbSNP
rs1334983513 1369 dbSNP
rs1418320548 1370 dbSNP
rs1215036552 1376 dbSNP
rs904109581 1377 dbSNP
rs772503094 1382 dbSNP
rs1043081932 1385 dbSNP
rs1209065381 1387 dbSNP
rs55936807 1391 dbSNP
rs1243682389 1392 dbSNP
rs1474531592 1392 dbSNP
rs879237368 1394 dbSNP
rs560199787 1403 dbSNP
rs1186212043 1405 dbSNP
rs1414604275 1411 dbSNP
rs569465202 1411 dbSNP
rs1192865679 1420 dbSNP
rs894206985 1427 dbSNP
rs1055534901 1440 dbSNP
rs555950679 1442 dbSNP
rs1320660152 1445 dbSNP
rs1487426834 1448 dbSNP
rs938441040 1449 dbSNP
rs1234549253 1450 dbSNP
rs1290925610 1452 dbSNP
rs898513969 1455 dbSNP
rs186069581 1459 dbSNP
rs1036236852 1460 dbSNP
rs1214816688 1460 dbSNP
rs1224309228 1460 dbSNP
rs1445119994 1460 dbSNP
rs200652098 1461 dbSNP
rs940563338 1462 dbSNP
rs1356171408 1465 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' agGACCUACGUUUAAAAu 5'
            ||||:   ||||||| 
Target 5' ggCUGGG---AAAUUUU- 3'
5 - 18
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_182692 | 3UTR | UUUCCCUUUGCAGGUUGCACACAGUUUUGUUUAUGCAUUUCCUUAAAAUUAAUUGUAGACUCCAGGAUACAAACCAUAGUAGGCAAUACAAUUUUAGAAUGUAAUAUAUAGAGGUAUAUUUAGCCUCUUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_182692 | 3UTR | UGCACACAGUUUUGUUUAUGCAUUUCCUUAAAAUUAAUUGUAGACUCCAGGAUACAAACCAUAGUAGGCAAUACAAUUUUAGAAUGUAAUAUAUAGAGGUAUAUUUAGCCUCUUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_182692 | 3UTR | UUGCAGGUUGCACACAGUUUUGUUUAUGCAUUUCCUUAAAAUUAAUUGUAGACUCCAGGAUACAAACCAUAGUAGGCAAUACAAUUUUAGAAUGUAAUAUAUAGAGGUAUAUUUAGCCUCUUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_182692 | 3UTR | GCACACAGUUUUGUUUAUGCAUUUCCUUAAAAUUAAUUGUAGACUCCAGGAUACAAACCAUAGUAGGCAAUACAAUUUUAGAAUGUAAUAUAUAGAGGUAUAUUUAGCCUCUUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_182692 | 3UTR | GUUGCACACAGUUUUGUUUAUGCAUUUCCUUAAAAUUAAUUGUAGACUCCAGGAUACAAACCAUAGUAGGCAAUACAAUUUUAGAAUGUAAUAUAUAGAGGUAUAUUUAGCCUCUUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_182692 | 3UTR | UUUAGAAUGUAAUAUAUAGAGGUAUAUUUAGCCUCUUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000393651.3 | 3UTR | CAAAGGCUGGGAAAUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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