pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol SLC30A1   
Synonyms ZNT1, ZRC1
Description solute carrier family 30 member 1
Transcript NM_021194   
Expression
Putative miRNA Targets on SLC30A1
3'UTR of SLC30A1
(miRNA target sites are highlighted)
>SLC30A1|NM_021194|3'UTR
   1 GTCTTGAAAAAGATGTGATATTTGACTTTTGCTTTAAACTGCAAGAGGAAAAAGACTCCACTGAAATTCTAAGTTTGCCA
  81 AGTAGTGTAATTGAAGTCCTTGTCTGGTCACACAGTTTAATTCTATTTTTGTAAGAACATAATGGGACTGCATAACAGAG
 161 TTCTATATTACAATTTTGTGATTATTAGTACAGAGTACAGCTATGCTGTGACTGTTTTGGAAAGCCAGTTTTAACACTAT
 241 GTTACATTTTTGTTTAAAGTAAGTTAAACCTTATATAACATAATGACATTTGATTTCTGGATTTTTCCCATGATAAAAAT
 321 TAGGGGGATAAATAAAATTGTTACTGGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acCACGUUUUCAU-----UA--ACAC---CAAAAa 5'
            || | |:||||     ||  ||||   ||||| 
Target 5' taGTAC-AGAGTACAGCTATGCTGTGACTGTTTTg 3'
186 - 219 116.00 -11.10
2
miRNA  3' acCACGUU---UUCAUUAAC--ACCAaaaa 5'
            |||:||   ||||  |||  ||||    
Target 5' taGTGTAATTGAAGTCCTTGTCTGGTcaca 3'
83 - 112 113.00 -9.36
3
miRNA  3' acCACGUUUUCAUUAACACCAAaaa 5'
            | | | || |||   | |||   
Target 5' agGGGGATAAATAA-AATTGTTact 3'
322 - 345 82.00 -5.07
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30170237 3 COSMIC
COSN31580266 12 COSMIC
COSN9058385 39 COSMIC
COSN30122504 41 COSMIC
COSN30512729 48 COSMIC
COSN31520529 54 COSMIC
COSN7201284 538 COSMIC
COSN20685055 982 COSMIC
COSN16089082 1083 COSMIC
COSN16446719 1143 COSMIC
COSN26548109 1338 COSMIC
COSN8431745 1738 COSMIC
COSN14450558 1751 COSMIC
COSN6021350 1858 COSMIC
COSN5364792 1875 COSMIC
COSN1429357 1917 COSMIC
COSN22041943 2526 COSMIC
COSN17218994 2662 COSMIC
COSN1429356 2838 COSMIC
COSN15155342 2962 COSMIC
COSN16422668 3061 COSMIC
COSN22149977 3131 COSMIC
COSN28012525 3425 COSMIC
COSN28013323 3426 COSMIC
COSN28201261 3578 COSMIC
COSN17388123 3820 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs201049709 12 dbSNP
rs760070061 13 dbSNP
rs754426615 16 dbSNP
rs1167539492 17 dbSNP
rs1265294537 18 dbSNP
rs1245975139 20 dbSNP
rs1466868425 21 dbSNP
rs766496624 27 dbSNP
rs1294754202 28 dbSNP
rs1407573584 29 dbSNP
rs749534869 32 dbSNP
rs773395015 37 dbSNP
rs772177057 39 dbSNP
rs762147943 41 dbSNP
rs775104010 43 dbSNP
rs201790487 44 dbSNP
rs745742605 47 dbSNP
rs1452486339 61 dbSNP
rs1361406817 71 dbSNP
rs1321842135 81 dbSNP
rs1367402232 105 dbSNP
rs1049086173 106 dbSNP
rs993591519 112 dbSNP
rs1295111168 114 dbSNP
rs1038089258 120 dbSNP
rs897874838 122 dbSNP
rs1235702363 131 dbSNP
rs1253969394 142 dbSNP
rs1056653294 149 dbSNP
rs939487764 151 dbSNP
rs781237696 152 dbSNP
rs1045750219 160 dbSNP
rs1187456175 167 dbSNP
rs1463148321 167 dbSNP
rs1267440118 173 dbSNP
rs1434478388 174 dbSNP
rs1196333764 180 dbSNP
rs1376242697 186 dbSNP
rs1450398476 188 dbSNP
rs946961557 189 dbSNP
rs914916270 193 dbSNP
rs910903525 195 dbSNP
rs1391546294 201 dbSNP
rs1389619969 208 dbSNP
rs187323190 216 dbSNP
rs1474348105 227 dbSNP
rs1368414760 236 dbSNP
rs1388697062 240 dbSNP
rs956473365 245 dbSNP
rs1344604619 255 dbSNP
rs757933576 263 dbSNP
rs933921889 263 dbSNP
rs1326900549 283 dbSNP
rs922314706 286 dbSNP
rs1188222265 287 dbSNP
rs922530941 288 dbSNP
rs976513808 292 dbSNP
rs574958119 298 dbSNP
rs1480305707 310 dbSNP
rs1183440092 311 dbSNP
rs1414660208 312 dbSNP
rs966530462 322 dbSNP
rs1018101410 326 dbSNP
rs1159051274 327 dbSNP
rs1278004938 334 dbSNP
rs1350505261 343 dbSNP
rs1022096498 368 dbSNP
rs990240374 372 dbSNP
rs1291982957 373 dbSNP
rs1206836064 374 dbSNP
rs207461064 376 dbSNP
rs1309556550 380 dbSNP
rs1348420390 386 dbSNP
rs957412628 390 dbSNP
rs1313399611 392 dbSNP
rs182290162 395 dbSNP
rs1381916826 399 dbSNP
rs1001530888 400 dbSNP
rs1483142042 406 dbSNP
rs1206868951 440 dbSNP
rs1254359191 444 dbSNP
rs952575764 450 dbSNP
rs907483587 454 dbSNP
rs1024558226 468 dbSNP
rs1415221157 469 dbSNP
rs1425621075 476 dbSNP
rs1162684397 481 dbSNP
rs1285282049 485 dbSNP
rs1384699535 486 dbSNP
rs1027661641 489 dbSNP
rs1447997431 497 dbSNP
rs538451706 514 dbSNP
rs1430586387 518 dbSNP
rs1310118143 522 dbSNP
rs1368436826 524 dbSNP
rs1441272740 525 dbSNP
rs1303344585 532 dbSNP
rs1381330377 534 dbSNP
rs993474994 541 dbSNP
rs897927114 555 dbSNP
rs754944530 570 dbSNP
rs879479230 571 dbSNP
rs1342284344 574 dbSNP
rs1230113247 577 dbSNP
rs751670946 583 dbSNP
rs577239568 593 dbSNP
rs558630836 595 dbSNP
rs941134388 609 dbSNP
rs1238412851 610 dbSNP
rs7519865 612 dbSNP
rs1049888158 613 dbSNP
rs758391409 624 dbSNP
rs1370191461 631 dbSNP
rs1045201640 633 dbSNP
rs933662390 636 dbSNP
rs1450210577 644 dbSNP
rs1170693780 645 dbSNP
rs922548595 651 dbSNP
rs978035742 652 dbSNP
rs750209146 659 dbSNP
rs1407132368 667 dbSNP
rs945241060 670 dbSNP
rs866425800 675 dbSNP
rs1464439845 681 dbSNP
rs368398119 684 dbSNP
rs894037273 693 dbSNP
rs539769517 702 dbSNP
rs957471333 707 dbSNP
rs1034431063 713 dbSNP
rs1360924937 720 dbSNP
rs1219458918 721 dbSNP
rs1279721971 751 dbSNP
rs1483154191 755 dbSNP
rs192147935 787 dbSNP
rs187905952 788 dbSNP
rs1322969913 812 dbSNP
rs976945862 815 dbSNP
rs7531277 828 dbSNP
rs994394234 829 dbSNP
rs897390996 831 dbSNP
rs763814370 839 dbSNP
rs1475176027 866 dbSNP
rs549680176 867 dbSNP
rs760048245 874 dbSNP
rs1412588624 875 dbSNP
rs775091663 876 dbSNP
rs531535338 880 dbSNP
rs972632483 881 dbSNP
rs1005660952 893 dbSNP
rs564127616 895 dbSNP
rs796791298 902 dbSNP
rs114373272 903 dbSNP
rs771306420 906 dbSNP
rs527272158 907 dbSNP
rs1415618979 910 dbSNP
rs945293980 916 dbSNP
rs1222546964 920 dbSNP
rs1248726151 920 dbSNP
rs915148724 920 dbSNP
rs1297165002 927 dbSNP
rs1053653760 936 dbSNP
rs905236842 941 dbSNP
rs1198511692 943 dbSNP
rs937824973 946 dbSNP
rs1473501962 949 dbSNP
rs926410939 953 dbSNP
rs763491397 957 dbSNP
rs1406567095 963 dbSNP
rs1325098486 964 dbSNP
rs1010999803 977 dbSNP
rs143821439 978 dbSNP
rs980220144 980 dbSNP
rs542496555 994 dbSNP
rs1175118330 995 dbSNP
rs971860615 997 dbSNP
rs1230732252 1002 dbSNP
rs1278338138 1004 dbSNP
rs575000150 1004 dbSNP
rs1052658033 1021 dbSNP
rs935580612 1032 dbSNP
rs900866790 1040 dbSNP
rs1292293424 1046 dbSNP
rs1040681659 1051 dbSNP
rs1489291997 1054 dbSNP
rs1246724718 1057 dbSNP
rs563220626 1069 dbSNP
rs773544496 1074 dbSNP
rs79039543 1079 dbSNP
rs1017131403 1080 dbSNP
rs1270550628 1080 dbSNP
rs1164419663 1086 dbSNP
rs1382867080 1086 dbSNP
rs1229588443 1092 dbSNP
rs577033998 1097 dbSNP
rs145083974 1101 dbSNP
rs1305384847 1107 dbSNP
rs983970435 1119 dbSNP
rs1221094266 1127 dbSNP
rs1412120420 1130 dbSNP
rs1327426798 1143 dbSNP
rs1368572935 1157 dbSNP
rs1335758342 1163 dbSNP
rs1449406990 1167 dbSNP
rs931163581 1168 dbSNP
rs1028874407 1170 dbSNP
rs1245476068 1173 dbSNP
rs1275678935 1178 dbSNP
rs997957367 1182 dbSNP
rs1438826346 1199 dbSNP
rs900894634 1226 dbSNP
rs1249561082 1229 dbSNP
rs1442874650 1240 dbSNP
rs1189561731 1244 dbSNP
rs1240683961 1251 dbSNP
rs1443524560 1254 dbSNP
rs1042077807 1259 dbSNP
rs1009229544 1268 dbSNP
rs1391697372 1269 dbSNP
rs918406615 1270 dbSNP
rs1396248517 1271 dbSNP
rs972684688 1281 dbSNP
rs937878588 1282 dbSNP
rs926492130 1284 dbSNP
rs959976396 1288 dbSNP
rs1380645537 1294 dbSNP
rs1452078240 1310 dbSNP
rs1298600871 1318 dbSNP
rs1367532428 1319 dbSNP
rs183702914 1330 dbSNP
rs1457772043 1331 dbSNP
rs1035433882 1332 dbSNP
rs1202077752 1334 dbSNP
rs950187800 1356 dbSNP
rs982111284 1359 dbSNP
rs917311296 1367 dbSNP
rs779776988 1370 dbSNP
rs1208884668 1376 dbSNP
rs1434474651 1376 dbSNP
rs1426311965 1380 dbSNP
rs969889478 1383 dbSNP
rs1372831429 1385 dbSNP
rs1192409238 1388 dbSNP
rs562992158 1394 dbSNP
rs1010926117 1398 dbSNP
rs1209892251 1402 dbSNP
rs534074598 1403 dbSNP
rs961354998 1410 dbSNP
rs41283136 1425 dbSNP
rs1387262360 1429 dbSNP
rs1380704795 1434 dbSNP
rs1259259731 1440 dbSNP
rs1212716643 1443 dbSNP
rs984344078 1445 dbSNP
rs878973593 1446 dbSNP
rs954410897 1467 dbSNP
rs1281296149 1479 dbSNP
rs1322649445 1490 dbSNP
rs1028508701 1493 dbSNP
rs192385380 1494 dbSNP
rs1484627896 1495 dbSNP
rs1204160022 1497 dbSNP
rs965191826 1499 dbSNP
rs1452543601 1500 dbSNP
rs1201957349 1504 dbSNP
rs1020714020 1506 dbSNP
rs1009282031 1508 dbSNP
rs901389263 1512 dbSNP
rs79551192 1517 dbSNP
rs893484780 1532 dbSNP
rs1041128149 1533 dbSNP
rs1288498036 1539 dbSNP
rs1391815004 1541 dbSNP
rs1232424539 1542 dbSNP
rs1002147593 1551 dbSNP
rs1006531718 1558 dbSNP
rs1228894095 1568 dbSNP
rs889438017 1575 dbSNP
rs1314596694 1588 dbSNP
rs1237781963 1598 dbSNP
rs1265515512 1602 dbSNP
rs1048198133 1603 dbSNP
rs536671323 1609 dbSNP
rs1046259122 1641 dbSNP
rs1490300039 1649 dbSNP
rs1183504871 1650 dbSNP
rs377251921 1653 dbSNP
rs1158395995 1659 dbSNP
rs918457453 1662 dbSNP
rs1036826228 1663 dbSNP
rs1286862147 1666 dbSNP
rs114523182 1670 dbSNP
rs1359566411 1683 dbSNP
rs1364703700 1684 dbSNP
rs1172619233 1685 dbSNP
rs1432542180 1688 dbSNP
rs17017772 1694 dbSNP
rs940074122 1696 dbSNP
rs1188641832 1710 dbSNP
rs537632495 1712 dbSNP
rs1428395783 1715 dbSNP
rs570702381 1719 dbSNP
rs552277170 1727 dbSNP
rs909897628 1728 dbSNP
rs1243281404 1738 dbSNP
rs1290643553 1748 dbSNP
rs1359157245 1751 dbSNP
rs1205748474 1752 dbSNP
rs185775684 1754 dbSNP
rs1479913136 1755 dbSNP
rs1483767205 1755 dbSNP
rs1280155220 1768 dbSNP
rs916576544 1770 dbSNP
rs60563145 1771 dbSNP
rs1446568722 1776 dbSNP
rs1344605212 1781 dbSNP
rs373670833 1782 dbSNP
rs1226825853 1791 dbSNP
rs1430647959 1793 dbSNP
rs1172189978 1811 dbSNP
rs1352566363 1814 dbSNP
rs1325736682 1815 dbSNP
rs1031134242 1823 dbSNP
rs999677946 1826 dbSNP
rs1029755712 1837 dbSNP
rs1397781459 1837 dbSNP
rs1215978418 1844 dbSNP
rs1298124800 1845 dbSNP
rs1306159912 1848 dbSNP
rs1204407949 1850 dbSNP
rs1021100183 1862 dbSNP
rs1462704667 1863 dbSNP
rs987903183 1864 dbSNP
rs370419496 1875 dbSNP
rs1188537323 1877 dbSNP
rs1355838591 1879 dbSNP
rs1312065662 1880 dbSNP
rs529698337 1887 dbSNP
rs1417088255 1890 dbSNP
rs1427755022 1922 dbSNP
rs1412466977 1925 dbSNP
rs966029627 1927 dbSNP
rs1372052199 1931 dbSNP
rs1002266418 1942 dbSNP
rs377711442 1945 dbSNP
rs1461021826 1948 dbSNP
rs1370886718 1950 dbSNP
rs1167526406 1954 dbSNP
rs563001616 1961 dbSNP
rs1007536238 1963 dbSNP
rs1326201135 1965 dbSNP
rs1222244761 1973 dbSNP
rs1262540897 1974 dbSNP
rs889495782 1977 dbSNP
rs544930558 1986 dbSNP
rs996989245 1993 dbSNP
rs1240638097 1994 dbSNP
rs1408021028 1996 dbSNP
rs761911635 2002 dbSNP
rs897668940 2009 dbSNP
rs148974309 2019 dbSNP
rs940126544 2025 dbSNP
rs1175657836 2027 dbSNP
rs896883860 2028 dbSNP
rs565165089 2031 dbSNP
rs1315776434 2035 dbSNP
rs1484136322 2035 dbSNP
rs1048418549 2037 dbSNP
rs1304185745 2038 dbSNP
rs1252842345 2042 dbSNP
rs1195496072 2044 dbSNP
rs1037285445 2049 dbSNP
rs938556090 2059 dbSNP
rs1225471459 2060 dbSNP
rs550038146 2061 dbSNP
rs928438987 2063 dbSNP
rs1223472423 2065 dbSNP
rs921235516 2065 dbSNP
rs374556225 2067 dbSNP
rs1246827415 2079 dbSNP
rs540441869 2087 dbSNP
rs1335396832 2089 dbSNP
rs750440568 2096 dbSNP
rs572971735 2105 dbSNP
rs1193883036 2120 dbSNP
rs1352148047 2127 dbSNP
rs944276140 2134 dbSNP
rs183000392 2138 dbSNP
rs989402318 2140 dbSNP
rs1403429933 2144 dbSNP
rs914092457 2148 dbSNP
rs958136810 2149 dbSNP
rs1336939608 2151 dbSNP
rs190060958 2155 dbSNP
rs924000825 2163 dbSNP
rs369476548 2166 dbSNP
rs1372656826 2167 dbSNP
rs988291473 2171 dbSNP
rs1294157753 2172 dbSNP
rs957804177 2173 dbSNP
rs1032088722 2178 dbSNP
rs778844206 2180 dbSNP
rs969461199 2182 dbSNP
rs1024610658 2183 dbSNP
rs774539532 2194 dbSNP
rs1231844776 2196 dbSNP
rs1444663207 2198 dbSNP
rs578205682 2208 dbSNP
rs1382935218 2210 dbSNP
rs1423601331 2214 dbSNP
rs1473765272 2214 dbSNP
rs1397630429 2218 dbSNP
rs532741625 2224 dbSNP
rs897724431 2229 dbSNP
rs1014734482 2240 dbSNP
rs1020200136 2240 dbSNP
rs1453388176 2248 dbSNP
rs1007177491 2251 dbSNP
rs1317426977 2252 dbSNP
rs1181344785 2269 dbSNP
rs185650013 2270 dbSNP
rs888565499 2277 dbSNP
rs1341166447 2285 dbSNP
rs538166384 2290 dbSNP
rs1272135588 2291 dbSNP
rs1210542393 2296 dbSNP
rs1468817689 2299 dbSNP
rs995142677 2317 dbSNP
rs1231416743 2323 dbSNP
rs1205090017 2331 dbSNP
rs896810662 2334 dbSNP
rs1240711401 2335 dbSNP
rs899844085 2342 dbSNP
rs1193412390 2356 dbSNP
rs1330941450 2358 dbSNP
rs1279985722 2362 dbSNP
rs570647860 2374 dbSNP
rs1476565183 2375 dbSNP
rs1015366284 2387 dbSNP
rs1423445080 2393 dbSNP
rs1003030576 2395 dbSNP
rs1333631384 2403 dbSNP
rs558754706 2407 dbSNP
rs1441033306 2410 dbSNP
rs944293304 2411 dbSNP
rs1393162010 2421 dbSNP
rs753701650 2422 dbSNP
rs145823053 2425 dbSNP
rs1319174086 2436 dbSNP
rs763608493 2438 dbSNP
rs1327995091 2440 dbSNP
rs566528326 2465 dbSNP
rs1269373465 2471 dbSNP
rs1225244771 2472 dbSNP
rs948640236 2474 dbSNP
rs936818856 2478 dbSNP
rs1460451165 2485 dbSNP
rs1205375624 2487 dbSNP
rs181371594 2493 dbSNP
rs1263326083 2495 dbSNP
rs893033660 2503 dbSNP
rs1449097610 2511 dbSNP
rs1191565295 2519 dbSNP
rs1423334225 2521 dbSNP
rs760410853 2529 dbSNP
rs1053730451 2538 dbSNP
rs1481075489 2542 dbSNP
rs936705707 2557 dbSNP
rs1427318832 2559 dbSNP
rs564579200 2560 dbSNP
rs1159372678 2568 dbSNP
rs529650271 2578 dbSNP
rs1380731901 2581 dbSNP
rs1297406471 2595 dbSNP
rs925404408 2596 dbSNP
rs1459336184 2603 dbSNP
rs944113714 2607 dbSNP
rs143839306 2610 dbSNP
rs1261963738 2616 dbSNP
rs985994284 2628 dbSNP
rs954289683 2648 dbSNP
rs768606626 2649 dbSNP
rs1468760721 2651 dbSNP
rs1490602232 2653 dbSNP
rs1379605743 2659 dbSNP
rs1267306652 2660 dbSNP
rs974301997 2662 dbSNP
rs1182696709 2667 dbSNP
rs189044796 2682 dbSNP
rs917593611 2684 dbSNP
rs1158230410 2693 dbSNP
rs1365985664 2706 dbSNP
rs1426250518 2707 dbSNP
rs961070882 2709 dbSNP
rs1301217986 2717 dbSNP
rs1015666109 2722 dbSNP
rs1199908413 2727 dbSNP
rs991821408 2728 dbSNP
rs1308570854 2734 dbSNP
rs961964763 2769 dbSNP
rs1014786701 2784 dbSNP
rs1006055237 2786 dbSNP
rs1002632237 2807 dbSNP
rs1251288502 2808 dbSNP
rs1211731709 2819 dbSNP
rs1466211869 2826 dbSNP
rs1290026966 2827 dbSNP
rs906905612 2833 dbSNP
rs951889028 2837 dbSNP
rs1252791863 2845 dbSNP
rs1284616772 2853 dbSNP
rs186183201 2855 dbSNP
rs117660914 2856 dbSNP
rs1257373110 2867 dbSNP
rs1161499547 2868 dbSNP
rs1349065365 2877 dbSNP
rs892960980 2877 dbSNP
rs1234622762 2878 dbSNP
rs1299769468 2879 dbSNP
rs1369608804 2881 dbSNP
rs1445319091 2891 dbSNP
rs1054324944 2918 dbSNP
rs934577572 2921 dbSNP
rs540378614 2923 dbSNP
rs1243294492 2928 dbSNP
rs763439960 2931 dbSNP
rs1437817454 2934 dbSNP
rs1041470328 2940 dbSNP
rs1042747529 2944 dbSNP
rs571916091 2945 dbSNP
rs561214286 2954 dbSNP
rs1488420960 2965 dbSNP
rs985529242 2983 dbSNP
rs1253536202 2991 dbSNP
rs1456502173 2992 dbSNP
rs1318015015 2995 dbSNP
rs932828411 3001 dbSNP
rs1052692545 3020 dbSNP
rs1243806160 3022 dbSNP
rs1462859464 3029 dbSNP
rs1181938903 3031 dbSNP
rs1412835528 3041 dbSNP
rs936875235 3050 dbSNP
rs925457636 3051 dbSNP
rs1404845506 3059 dbSNP
rs547025303 3077 dbSNP
rs1174489868 3078 dbSNP
rs1465028570 3092 dbSNP
rs543152912 3106 dbSNP
rs1434395785 3113 dbSNP
rs1407619467 3116 dbSNP
rs1045214507 3117 dbSNP
rs1450050486 3117 dbSNP
rs1393287203 3119 dbSNP
rs1378918083 3127 dbSNP
rs749874633 3129 dbSNP
rs1215453582 3136 dbSNP
rs947820718 3137 dbSNP
rs1190603914 3138 dbSNP
rs917663019 3144 dbSNP
rs770298172 3146 dbSNP
rs1462674363 3151 dbSNP
rs544815329 3159 dbSNP
rs575525470 3163 dbSNP
rs1242655372 3175 dbSNP
rs575715175 3179 dbSNP
rs961585991 3184 dbSNP
rs1188112394 3185 dbSNP
rs781313548 3192 dbSNP
rs557357726 3195 dbSNP
rs373216870 3198 dbSNP
rs981488820 3209 dbSNP
rs762115514 3213 dbSNP
rs1467720117 3229 dbSNP
rs1023166728 3230 dbSNP
rs984685763 3236 dbSNP
rs1211084328 3239 dbSNP
rs139174391 3243 dbSNP
rs1277521034 3250 dbSNP
rs1432439470 3250 dbSNP
rs1230004120 3251 dbSNP
rs777085766 3262 dbSNP
rs1339535937 3270 dbSNP
rs768729033 3276 dbSNP
rs146708627 3281 dbSNP
rs75248493 3297 dbSNP
rs1325767726 3298 dbSNP
rs182016147 3299 dbSNP
rs1032799904 3301 dbSNP
rs1277988220 3322 dbSNP
rs1317800234 3323 dbSNP
rs1218174347 3326 dbSNP
rs1429319553 3330 dbSNP
rs1487810731 3333 dbSNP
rs1019690402 3338 dbSNP
rs998737015 3345 dbSNP
rs1476997114 3349 dbSNP
rs903060957 3351 dbSNP
rs1042410804 3352 dbSNP
rs1008673025 3353 dbSNP
rs1030980355 3358 dbSNP
rs891108799 3364 dbSNP
rs143153388 3367 dbSNP
rs1373909371 3371 dbSNP
rs1170518164 3373 dbSNP
rs932714017 3384 dbSNP
rs1410583776 3393 dbSNP
rs1434915968 3395 dbSNP
rs1274378458 3396 dbSNP
rs1418947113 3397 dbSNP
rs1167258748 3427 dbSNP
rs1225704983 3428 dbSNP
rs1474420308 3430 dbSNP
rs1284074878 3432 dbSNP
rs747301561 3437 dbSNP
rs11553543 3440 dbSNP
rs1223034698 3440 dbSNP
rs896263985 3440 dbSNP
rs1259272116 3441 dbSNP
rs1232981190 3442 dbSNP
rs1470848521 3443 dbSNP
rs1188428814 3444 dbSNP
rs1485111815 3446 dbSNP
rs541554246 3460 dbSNP
rs940302406 3471 dbSNP
rs1437897110 3472 dbSNP
rs1164670666 3475 dbSNP
rs908760471 3481 dbSNP
rs572601710 3486 dbSNP
rs1404130206 3495 dbSNP
rs1323422080 3508 dbSNP
rs1213262916 3517 dbSNP
rs930583054 3518 dbSNP
rs971497240 3523 dbSNP
rs915579314 3524 dbSNP
rs1246954935 3533 dbSNP
rs1233084280 3540 dbSNP
rs550521801 3540 dbSNP
rs1316942019 3542 dbSNP
rs1354009326 3545 dbSNP
rs991233923 3549 dbSNP
rs957083926 3552 dbSNP
rs1273547935 3558 dbSNP
rs1439490375 3562 dbSNP
rs1032811270 3566 dbSNP
rs11277 3576 dbSNP
rs1185011072 3578 dbSNP
rs1326937034 3579 dbSNP
rs1408101684 3594 dbSNP
rs1419965194 3598 dbSNP
rs1163190694 3599 dbSNP
rs1420932890 3608 dbSNP
rs1165627281 3613 dbSNP
rs1467629667 3614 dbSNP
rs986898105 3615 dbSNP
rs967223672 3626 dbSNP
rs531959230 3630 dbSNP
rs1008812852 3633 dbSNP
rs1453691400 3634 dbSNP
rs1338885849 3635 dbSNP
rs758115075 3636 dbSNP
rs1350385876 3639 dbSNP
rs1338493985 3640 dbSNP
rs10158 3644 dbSNP
rs891154874 3649 dbSNP
rs112016857 3661 dbSNP
rs996934257 3675 dbSNP
rs898557097 3678 dbSNP
rs1000856248 3681 dbSNP
rs41283134 3682 dbSNP
rs59307676 3700 dbSNP
rs1038560129 3707 dbSNP
rs1470314925 3708 dbSNP
rs1023887074 3713 dbSNP
rs1441478861 3726 dbSNP
rs1187354064 3729 dbSNP
rs940213473 3730 dbSNP
rs146742917 3732 dbSNP
rs896665447 3737 dbSNP
rs1056534008 3738 dbSNP
rs1400410184 3740 dbSNP
rs753541857 3747 dbSNP
rs1318775543 3748 dbSNP
rs777667441 3749 dbSNP
rs561435842 3751 dbSNP
rs1342100265 3756 dbSNP
rs1398096138 3759 dbSNP
rs1277422639 3762 dbSNP
rs1345601213 3764 dbSNP
rs1274334802 3774 dbSNP
rs1224888920 3775 dbSNP
rs1213665507 3776 dbSNP
rs940467330 3781 dbSNP
rs886175394 3794 dbSNP
rs570728176 3801 dbSNP
rs930321729 3804 dbSNP
rs950324572 3817 dbSNP
rs1263186324 3818 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' accacgUUUUCAUUAA--CACCAAaaa 5'
                |||:||  ||  ||||||   
Target 5' -----aAAAGGU--UUGGGUGGUU--- 3'
1 - 17
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000367001.4 | 3UTR | AAAAGGUUUGGGUGGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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