pre-miRNA Information
pre-miRNA hsa-mir-2355   
Genomic Coordinates chr2: 207109987 - 207110073
Description Homo sapiens miR-2355 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-2355-5p
Sequence 11| AUCCCCAGAUACAAUGGACAA |31
Evidence Experimental
Experiments SOLiD
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 1 2 - 207110063 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1268296297 4 dbSNP
rs1361046879 5 dbSNP
rs1219551997 6 dbSNP
rs1295756820 12 dbSNP
rs1345273529 15 dbSNP
rs977145706 15 dbSNP
rs1209629984 20 dbSNP
rs759940260 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SIRPA   
Synonyms BIT, CD172A, MFR, MYD-1, P84, PTPNS1, SHPS1, SIRP
Description signal regulatory protein alpha
Transcript NM_001040022   
Other Transcripts NM_001040023 , NM_080792   
Expression
Putative miRNA Targets on SIRPA
3'UTR of SIRPA
(miRNA target sites are highlighted)
>SIRPA|NM_001040022|3'UTR
   1 ATGGGACCGTGGTTTGCTCTAGCACCCATCTCTACGCGCTTTCTTGTCCCACAGGGAGCCGCCGTGATGAGCACAGCCAA
  81 CCCAGTTCCCGGAGGGCTGGGGCGGTGCAGGCTCTGGGACCCAGGGGCCAGGGTGGCTCTTCTCTCCCCACCCCTCCTTG
 161 GCTCTCCAGCACTTCCTGGGCAGCCACGGCCCCCTCCCCCCACATTGCCACATACCTGGAGGCTGACGTTGCCAAACCAG
 241 CCAGGGAACCAACCTGGGAAGTGGCCAGAACTGCCTGGGGTCCAAGAACTCTTGTGCCTCCGTCCATCACCATGTGGGTT
 321 TTGAAGACCCTCGACTGCCTCCCCGATGCTCCGAAGCCTGATCTTCCAGGGTGGGGAGGAGAAAATCCCACCTCCCCTGA
 401 CCTCCACCACCTCCACCACCACCACCACCACCACCACCACCACTACCACCACCACCCAACTGGGGCTAGAGTGGGGAAGA
 481 TTTCCCCTTTAGATCAAACTGCCCCTTCCATGGAAAAGCTGGAAAAAAACTCTGGAACCCATATCCAGGCTTGGTGAGGT
 561 TGCTGCCAACAGTCCTGGCCTCCCCCATCCCTAGGCTAAAGAGCCATGAGTCCTGGAGGAGGAGAGGACCCCTCCCAAAG
 641 GACTGGAGACAAAACCCTCTGCTTCCTTGGGTCCCTCCAAGACTCCCTGGGGCCCAACTGTGTTGCTCCACCCGGACCCA
 721 TCTCTCCCTTCTAGACCTGAGCTTGCCCCTCCAGCTAGCACTAAGCAACATCTCGCTGTGGACGCCTGTAAATTACTGAG
 801 AAATGTGAAACGTGCAATCTTGAAACTGAGGTGTTAGAAAACTTGATCTGTGGTGTTTTGTTTTGTTTTTTTTCTTAAAA
 881 CAACAGCAACGTGATCTTGGCTGTCTGTCATGTGTTGAAGTCCATGGTTGGGTCTTGTGAAGTCTGAGGTTTAACAGTTT
 961 GTTGTCCTGGAGGGATTTTCTTACAGCGAAGACTTGAGTTCCTCCAAGTCCCAGAACCCCAAGAATGGGCAAGAAGGATC
1041 AGGTCAGCCACTCCCTGGAGACACAGCCTTCTGGCTGGGACTGACTTGGCCATGTTCTCAGCTGAGCCACGCGGCTGGTA
1121 GTGCAGCCTTCTGTGACCCCGCTGTGGTAAGTCCAGCCTGCCCAGGGCTGCTGAGGGCTGCCTCTTGACAGTGCAGTCTT
1201 ATCGAGACCCAATGCCTCAGTCTGCTCATCCGTAAAGTGGGGATAGTGAAGATGACACCCCTCCCCACCACCTCTCATAA
1281 GCACTTTAGGAACACACAGAGGGTAGGGATAGTGGCCCTGGCCGTCTATCCTACCCCTTTAGTGACCGCCCCCATCCCGG
1361 CTTTCTGAGCTGATCCTTGAAGAAGAAATCTTCCATTTCTGCTCTCAAACCCTACTGGGATCAAACTGGAATAAATTGAA
1441 GACAGCCAGGGGGATGGTGCAGCTGTGAAGCTCGGGCTGATTCCCCCTCTGTCCCAGAAGGTTGGCCAGAGGGTGTGACC
1521 CAGTTACCCTTTAACCCCCACCCTTCCAGTCGGGTGTGAGGGCCTGACCGGGCCCAGGGCAAGCAGATGTCGCAAGCCCT
1601 ATTTATTCAGTCTTCACTATAACTCTTAGAGTTGAGACGCTAATGTTCATGACTCCTGGCCTTGGGATGCCCAAGGGATT
1681 TCTGGCTCAGGCTGTAAAAGTAGCTGAGCCATCCTGCCCATTCCTGGAGGTCCTACAGGTGAAACTGCAGGAGCTCAGCA
1761 TAGACCCAGCTCTCTGGGGGATGGTCACCTGGTGATTTCAATGATGGCATCCAGGAATTAGCTGAGCCAACAGACCATGT
1841 GGACAGCTTTGGCCAGAGCTCCCGTGTGGCATCTGGGAGCCACAGTGACCCAGCCACCTGGCTCAGGCTAGTTCCAAATT
1921 CCAAAAGATTGGCTTGTAAACCTTCGTCTCCCTCTCTTTTACCCAGAGACAGCACATACGTGTGCACACGCATGCACACA
2001 CACATTCAGTATTTTAAAAGAATGTTTTCTTGGTGCCATTTTCATTTTATTTTATTTTTTAATTCTTGGAGGGGGAAATA
2081 AGGGAATAAGGCCAAGGAAGATGTATAGCTTTAGCTTTAGCCTGGCAACCTGGAGAATCCACATACCTTGTGTATTGAAC
2161 CCCAGGAAAAGGAAGAGGTCGAACCAACCCTGCGGAAGGAGCATGGTTTCAGGAGTTTATTTTAAGACTGCTGGGAAGGA
2241 AACAGGCCCCATTTTGTATATAGTTGCAACTTAAACTTTTTGGCTTGCAAAATATTTTTGTAATAAAGATTTCTGGGTAA
2321 TAATGA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aacaGGUAAC-AUAGACCCCUa 5'
              |||  | | |||||||: 
Target 5' agacCCA--GCTCTCTGGGGGa 3'
1762 - 1781 133.00 -16.10
2
miRNA  3' aaCAGGUAACAU----A-GACCCCUa 5'
            ||::||| ||    | ||||| | 
Target 5' gaGTTTATTTTAAGACTGCTGGGAAg 3'
2213 - 2238 125.00 -8.94
3
miRNA  3' aacagguaacAUAGACCCCua 5'
                    |: ||||||  
Target 5' tggccagaacTGCCTGGGGtc 3'
262 - 282 123.00 -14.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30488574 4 COSMIC
COSN30465052 9 COSMIC
COSN26994756 10 COSMIC
COSN30181182 15 COSMIC
COSN31481753 37 COSMIC
COSN31485263 53 COSMIC
COSN13849634 62 COSMIC
COSN14517444 65 COSMIC
COSN30187819 72 COSMIC
COSN30447725 89 COSMIC
COSN28560680 92 COSMIC
COSN28875157 98 COSMIC
COSN13849637 104 COSMIC
COSN30170678 138 COSMIC
COSN6686108 188 COSMIC
COSN28668275 202 COSMIC
COSN31550458 584 COSMIC
COSN14856343 692 COSMIC
COSN31576973 763 COSMIC
COSN26667115 784 COSMIC
COSN31569645 790 COSMIC
COSN30169458 874 COSMIC
COSN22976244 897 COSMIC
COSN25118435 940 COSMIC
COSN21331939 1024 COSMIC
COSN31544644 1113 COSMIC
COSN25197249 1215 COSMIC
COSN16667578 1260 COSMIC
COSN8610541 1291 COSMIC
COSN31533184 1348 COSMIC
COSN20703588 1360 COSMIC
COSN31521747 1372 COSMIC
COSN31593707 1449 COSMIC
COSN28787726 1563 COSMIC
COSN1866871 1571 COSMIC
COSN22976245 1592 COSMIC
COSN1866872 1620 COSMIC
COSN22053329 1627 COSMIC
COSN20093681 1870 COSMIC
COSN23756089 2055 COSMIC
COSN31611281 2105 COSMIC
COSN26641201 2181 COSMIC
COSN31520360 2314 COSMIC
COSN31575832 2317 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs375290385 8 dbSNP
rs769062665 9 dbSNP
rs748320579 10 dbSNP
rs772282310 11 dbSNP
rs1351237737 12 dbSNP
rs572608416 16 dbSNP
rs542804191 24 dbSNP
rs369353013 30 dbSNP
rs775423179 33 dbSNP
rs371470675 36 dbSNP
rs763820080 37 dbSNP
rs77592657 38 dbSNP
rs375925156 39 dbSNP
rs749882066 41 dbSNP
rs1158809620 43 dbSNP
rs756688658 46 dbSNP
rs1459925263 48 dbSNP
rs370500989 50 dbSNP
rs1292240004 53 dbSNP
rs373689728 57 dbSNP
rs1233854521 60 dbSNP
rs893024362 61 dbSNP
rs143865869 62 dbSNP
rs1275393187 64 dbSNP
rs879018252 65 dbSNP
rs1020091278 68 dbSNP
rs1176057183 74 dbSNP
rs1235720760 77 dbSNP
rs1349152336 82 dbSNP
rs368779467 91 dbSNP
rs2235747 92 dbSNP
rs186304926 96 dbSNP
rs1321200800 98 dbSNP
rs1404347755 99 dbSNP
rs1390874199 101 dbSNP
rs953087427 104 dbSNP
rs112445687 105 dbSNP
rs1182734485 106 dbSNP
rs1471049301 107 dbSNP
rs909482082 108 dbSNP
rs566398795 112 dbSNP
rs1336188635 126 dbSNP
rs527503051 128 dbSNP
rs1215628236 149 dbSNP
rs1277486891 150 dbSNP
rs1327081785 155 dbSNP
rs1288285209 157 dbSNP
rs1357302234 169 dbSNP
rs1376018348 182 dbSNP
rs111565548 188 dbSNP
rs918123309 189 dbSNP
rs771007152 190 dbSNP
rs1200806972 194 dbSNP
rs1455194143 196 dbSNP
rs1387208811 197 dbSNP
rs1159852738 198 dbSNP
rs567451296 200 dbSNP
rs1045214032 201 dbSNP
rs73071223 202 dbSNP
rs1202884711 204 dbSNP
rs1239531930 208 dbSNP
rs1057124 214 dbSNP
rs538613207 216 dbSNP
rs893075253 217 dbSNP
rs1267541008 220 dbSNP
rs1217180114 223 dbSNP
rs1319223850 224 dbSNP
rs1277017604 225 dbSNP
rs1473932230 226 dbSNP
rs1169353574 228 dbSNP
rs1305197399 229 dbSNP
rs1396773301 232 dbSNP
rs1432868474 235 dbSNP
rs1357348056 237 dbSNP
rs1408949064 247 dbSNP
rs1326630036 255 dbSNP
rs1396608326 256 dbSNP
rs191198362 265 dbSNP
rs1447850381 268 dbSNP
rs3197744 274 dbSNP
rs1187168139 278 dbSNP
rs1487173967 280 dbSNP
rs1042013286 281 dbSNP
rs901709914 290 dbSNP
rs1312171520 297 dbSNP
rs1282868058 299 dbSNP
rs112665073 302 dbSNP
rs554772670 303 dbSNP
rs1229714911 314 dbSNP
rs1270791245 328 dbSNP
rs1295746136 333 dbSNP
rs1383410848 333 dbSNP
rs576227737 334 dbSNP
rs181600116 343 dbSNP
rs888838296 345 dbSNP
rs565199195 346 dbSNP
rs1368712076 352 dbSNP
rs1281221077 353 dbSNP
rs772869256 354 dbSNP
rs1430397716 358 dbSNP
rs1411661961 363 dbSNP
rs1210869702 364 dbSNP
rs1015908024 370 dbSNP
rs1486269640 372 dbSNP
rs577221642 375 dbSNP
rs540498557 380 dbSNP
rs972380181 383 dbSNP
rs1025647188 387 dbSNP
rs970924780 388 dbSNP
rs1319436474 390 dbSNP
rs1474893937 392 dbSNP
rs113337613 398 dbSNP
rs1233872636 399 dbSNP
rs1396708149 400 dbSNP
rs926706424 400 dbSNP
rs1408991856 404 dbSNP
rs147060831 404 dbSNP
rs373105819 404 dbSNP
rs71330414 405 dbSNP
rs1309242878 406 dbSNP
rs1435086404 407 dbSNP
rs936712888 407 dbSNP
rs1311977863 410 dbSNP
rs1213763147 413 dbSNP
rs1227663163 413 dbSNP
rs1264407132 413 dbSNP
rs13043575 413 dbSNP
rs1336163950 413 dbSNP
rs1336207408 413 dbSNP
rs1371930126 413 dbSNP
rs1420649835 413 dbSNP
rs71193939 413 dbSNP
rs777823573 413 dbSNP
rs752507065 416 dbSNP
rs1365740486 418 dbSNP
rs1393413218 418 dbSNP
rs1325386840 419 dbSNP
rs1462037413 421 dbSNP
rs796348155 422 dbSNP
rs1157627987 426 dbSNP
rs1184406548 427 dbSNP
rs1364788131 427 dbSNP
rs1453634881 427 dbSNP
rs1431156753 428 dbSNP
rs560208186 428 dbSNP
rs1193811119 430 dbSNP
rs1251991585 430 dbSNP
rs1373577886 433 dbSNP
rs1469438507 433 dbSNP
rs1208078201 436 dbSNP
rs1230789258 436 dbSNP
rs1262329707 436 dbSNP
rs1311326679 439 dbSNP
rs1302970917 442 dbSNP
rs973309556 445 dbSNP
rs527428768 449 dbSNP
rs1373337951 451 dbSNP
rs1318596183 452 dbSNP
rs1382214550 453 dbSNP
rs913931869 454 dbSNP
rs945362149 455 dbSNP
rs1041673905 466 dbSNP
rs1394803566 477 dbSNP
rs1173915157 479 dbSNP
rs1325900692 484 dbSNP
rs186901225 495 dbSNP
rs1191834450 504 dbSNP
rs1447581203 505 dbSNP
rs1263769883 506 dbSNP
rs1198605510 512 dbSNP
rs933168776 514 dbSNP
rs1280740736 522 dbSNP
rs1050194736 523 dbSNP
rs1350307571 523 dbSNP
rs1428947544 523 dbSNP
rs1226786031 529 dbSNP
rs1305882194 530 dbSNP
rs1320876778 535 dbSNP
rs1394762531 543 dbSNP
rs1375264605 554 dbSNP
rs1436264751 555 dbSNP
rs1349136007 570 dbSNP
rs1387936924 571 dbSNP
rs866518151 574 dbSNP
rs1429818325 575 dbSNP
rs1475465524 580 dbSNP
rs561111930 585 dbSNP
rs878954319 587 dbSNP
rs1005955600 599 dbSNP
rs531523652 606 dbSNP
rs770742122 622 dbSNP
rs1353495735 625 dbSNP
rs1206195203 626 dbSNP
rs1481912288 627 dbSNP
rs1261864205 630 dbSNP
rs550107584 635 dbSNP
rs1195393691 636 dbSNP
rs897530512 663 dbSNP
rs1445894264 665 dbSNP
rs1190645223 668 dbSNP
rs571516808 671 dbSNP
rs1025231382 680 dbSNP
rs1454405142 681 dbSNP
rs539042639 686 dbSNP
rs1392998526 692 dbSNP
rs980951828 698 dbSNP
rs1410149831 701 dbSNP
rs1398068646 703 dbSNP
rs143167188 709 dbSNP
rs1159055229 713 dbSNP
rs760245995 714 dbSNP
rs150878335 715 dbSNP
rs1471499850 718 dbSNP
rs1399021100 724 dbSNP
rs1181412996 731 dbSNP
rs945399360 732 dbSNP
rs977130383 734 dbSNP
rs371927588 737 dbSNP
rs6045550 738 dbSNP
rs933263439 749 dbSNP
rs1050291783 750 dbSNP
rs1235631490 756 dbSNP
rs888985502 762 dbSNP
rs1301738736 769 dbSNP
rs1337869422 770 dbSNP
rs941868766 772 dbSNP
rs769155587 775 dbSNP
rs554635921 784 dbSNP
rs1349409058 785 dbSNP
rs897537498 789 dbSNP
rs768702680 792 dbSNP
rs1274456889 799 dbSNP
rs1468669956 812 dbSNP
rs576239785 813 dbSNP
rs1046462843 818 dbSNP
rs1177557624 819 dbSNP
rs191370436 821 dbSNP
rs1420642755 837 dbSNP
rs1302195651 845 dbSNP
rs1191926294 849 dbSNP
rs906178370 853 dbSNP
rs1253664621 854 dbSNP
rs138322358 854 dbSNP
rs1315640381 856 dbSNP
rs1224686276 866 dbSNP
rs536102426 866 dbSNP
rs958232041 866 dbSNP
rs1300833608 870 dbSNP
rs1363163553 871 dbSNP
rs966807261 874 dbSNP
rs1011038743 875 dbSNP
rs1021045267 876 dbSNP
rs1451463747 877 dbSNP
rs967173992 877 dbSNP
rs1159659016 882 dbSNP
rs558844561 887 dbSNP
rs1167218896 891 dbSNP
rs774730341 892 dbSNP
rs1453969885 901 dbSNP
rs1461157745 904 dbSNP
rs182837589 905 dbSNP
rs966197895 911 dbSNP
rs1484894462 912 dbSNP
rs954039417 913 dbSNP
rs986052091 919 dbSNP
rs772318109 923 dbSNP
rs1306647738 925 dbSNP
rs1334537882 928 dbSNP
rs73891845 943 dbSNP
rs537366393 946 dbSNP
rs941878745 954 dbSNP
rs150059041 956 dbSNP
rs1289399837 961 dbSNP
rs984218305 962 dbSNP
rs1334898910 967 dbSNP
rs6035100 968 dbSNP
rs759165792 976 dbSNP
rs1373444127 978 dbSNP
rs1036740268 980 dbSNP
rs906381191 985 dbSNP
rs1481372515 988 dbSNP
rs929070785 989 dbSNP
rs1046132611 994 dbSNP
rs1418843233 1003 dbSNP
rs1196172508 1011 dbSNP
rs1249496857 1018 dbSNP
rs906231348 1025 dbSNP
rs1471585858 1035 dbSNP
rs1486165169 1038 dbSNP
rs1189937225 1049 dbSNP
rs759562499 1051 dbSNP
rs764901548 1054 dbSNP
rs1295641137 1059 dbSNP
rs1055387039 1061 dbSNP
rs774933476 1074 dbSNP
rs1292526811 1080 dbSNP
rs1010804201 1087 dbSNP
rs1011093380 1088 dbSNP
rs560922355 1095 dbSNP
rs1460629608 1098 dbSNP
rs1022332114 1102 dbSNP
rs1171206311 1104 dbSNP
rs7274469 1111 dbSNP
rs999650373 1112 dbSNP
rs764026989 1113 dbSNP
rs966250650 1114 dbSNP
rs1175164408 1127 dbSNP
rs188342909 1130 dbSNP
rs374508173 1132 dbSNP
rs1232155431 1139 dbSNP
rs952427779 1141 dbSNP
rs1233781161 1142 dbSNP
rs1357177842 1149 dbSNP
rs1304569391 1153 dbSNP
rs1308915715 1156 dbSNP
rs1227650059 1165 dbSNP
rs144408825 1187 dbSNP
rs1046610548 1189 dbSNP
rs530395148 1192 dbSNP
rs547668476 1203 dbSNP
rs189525439 1204 dbSNP
rs565983097 1205 dbSNP
rs6045554 1214 dbSNP
rs1370614474 1215 dbSNP
rs939215092 1217 dbSNP
rs548281393 1232 dbSNP
rs1421695547 1234 dbSNP
rs569787357 1240 dbSNP
rs537263433 1241 dbSNP
rs182225863 1242 dbSNP
rs1178522814 1243 dbSNP
rs577308104 1244 dbSNP
rs780442559 1252 dbSNP
rs749327629 1254 dbSNP
rs998326981 1257 dbSNP
rs529976502 1269 dbSNP
rs1336835176 1272 dbSNP
rs1029711496 1273 dbSNP
rs1238071337 1278 dbSNP
rs946659385 1279 dbSNP
rs1317233237 1283 dbSNP
rs571003390 1288 dbSNP
rs1449227869 1292 dbSNP
rs535052702 1300 dbSNP
rs187716843 1301 dbSNP
rs1040501187 1307 dbSNP
rs962728320 1308 dbSNP
rs755015622 1313 dbSNP
rs1026227666 1315 dbSNP
rs950607787 1318 dbSNP
rs1364695534 1319 dbSNP
rs1160125401 1324 dbSNP
rs901947887 1325 dbSNP
rs546860384 1337 dbSNP
rs1452769668 1344 dbSNP
rs115157852 1348 dbSNP
rs772615253 1349 dbSNP
rs542596155 1350 dbSNP
rs1262244871 1356 dbSNP
rs1006433304 1359 dbSNP
rs1345978927 1360 dbSNP
rs1302860729 1373 dbSNP
rs1235129928 1377 dbSNP
rs1294095474 1379 dbSNP
rs990555953 1379 dbSNP
rs773526309 1383 dbSNP
rs554723399 1389 dbSNP
rs1300422261 1394 dbSNP
rs369140789 1398 dbSNP
rs961039966 1399 dbSNP
rs914945481 1422 dbSNP
rs972346717 1429 dbSNP
rs576168926 1437 dbSNP
rs1478738917 1438 dbSNP
rs747397443 1458 dbSNP
rs960765956 1461 dbSNP
rs769380208 1472 dbSNP
rs1429030914 1474 dbSNP
rs990576624 1475 dbSNP
rs1208462746 1476 dbSNP
rs1485186216 1478 dbSNP
rs1280702719 1486 dbSNP
rs202031137 1487 dbSNP
rs916438887 1487 dbSNP
rs775129990 1504 dbSNP
rs1207899714 1506 dbSNP
rs946531301 1508 dbSNP
rs1280574621 1513 dbSNP
rs543524189 1513 dbSNP
rs1413338334 1516 dbSNP
rs1043676943 1528 dbSNP
rs923831183 1544 dbSNP
rs762736505 1547 dbSNP
rs564982615 1552 dbSNP
rs532326714 1553 dbSNP
rs901837533 1555 dbSNP
rs1425700599 1565 dbSNP
rs1016965091 1569 dbSNP
rs996706705 1570 dbSNP
rs1194680153 1571 dbSNP
rs1050496711 1573 dbSNP
rs1444328836 1575 dbSNP
rs879031076 1577 dbSNP
rs1026656742 1579 dbSNP
rs950634904 1581 dbSNP
rs981960247 1584 dbSNP
rs1318627355 1586 dbSNP
rs1034880218 1587 dbSNP
rs773965118 1591 dbSNP
rs200183042 1592 dbSNP
rs139801165 1595 dbSNP
rs767590832 1600 dbSNP
rs1333620128 1606 dbSNP
rs559553245 1620 dbSNP
rs765539885 1629 dbSNP
rs374289949 1639 dbSNP
rs962291607 1650 dbSNP
rs546261943 1651 dbSNP
rs1460835217 1655 dbSNP
rs566633940 1659 dbSNP
rs1453844142 1664 dbSNP
rs1468348599 1668 dbSNP
rs11551718 1672 dbSNP
rs1003064488 1673 dbSNP
rs750190928 1677 dbSNP
rs946384737 1680 dbSNP
rs1362595227 1690 dbSNP
rs1458297212 1695 dbSNP
rs1442584929 1697 dbSNP
rs1202665863 1714 dbSNP
rs548144513 1727 dbSNP
rs1334756130 1729 dbSNP
rs1291125853 1734 dbSNP
rs960400181 1735 dbSNP
rs1303934614 1752 dbSNP
rs1369951189 1758 dbSNP
rs1217466546 1761 dbSNP
rs1348918514 1762 dbSNP
rs1278619785 1768 dbSNP
rs556525804 1769 dbSNP
rs149221689 1775 dbSNP
rs1440163209 1781 dbSNP
rs977758042 1781 dbSNP
rs924208543 1801 dbSNP
rs1398760218 1802 dbSNP
rs916298970 1803 dbSNP
rs934285838 1807 dbSNP
rs967892390 1818 dbSNP
rs1440531418 1838 dbSNP
rs1317377041 1839 dbSNP
rs1215173760 1847 dbSNP
rs1191827375 1848 dbSNP
rs1468039495 1864 dbSNP
rs530939742 1865 dbSNP
rs923757494 1866 dbSNP
rs1214519212 1869 dbSNP
rs1252816219 1871 dbSNP
rs570144665 1877 dbSNP
rs760556721 1881 dbSNP
rs1409354024 1886 dbSNP
rs1355399159 1889 dbSNP
rs1418943597 1890 dbSNP
rs1367636805 1898 dbSNP
rs898544815 1911 dbSNP
rs1428516964 1926 dbSNP
rs994588280 1927 dbSNP
rs1044624240 1937 dbSNP
rs1047035041 1946 dbSNP
rs923269755 1947 dbSNP
rs1362699593 1973 dbSNP
rs766639601 1980 dbSNP
rs1453898776 1981 dbSNP
rs768972881 1982 dbSNP
rs1326157120 1983 dbSNP
rs754000880 1983 dbSNP
rs1349158046 1984 dbSNP
rs200345036 1989 dbSNP
rs570996938 1990 dbSNP
rs1281014101 1991 dbSNP
rs532657774 1991 dbSNP
rs1050958141 1993 dbSNP
rs1223105331 1995 dbSNP
rs1217811912 1998 dbSNP
rs887842796 2003 dbSNP
rs1209656661 2004 dbSNP
rs942099548 2008 dbSNP
rs1012054362 2013 dbSNP
rs1036515450 2014 dbSNP
rs1280098038 2021 dbSNP
rs897989038 2027 dbSNP
rs879414166 2044 dbSNP
rs1214615390 2051 dbSNP
rs1361182051 2053 dbSNP
rs772557423 2055 dbSNP
rs1272778489 2070 dbSNP
rs552678395 2076 dbSNP
rs1401634373 2084 dbSNP
rs1207077345 2085 dbSNP
rs967803116 2098 dbSNP
rs1035906875 2099 dbSNP
rs978229424 2108 dbSNP
rs77467740 2110 dbSNP
rs1178316245 2115 dbSNP
rs528401360 2127 dbSNP
rs955031486 2129 dbSNP
rs1023703506 2131 dbSNP
rs967820235 2138 dbSNP
rs1255811259 2139 dbSNP
rs377660136 2142 dbSNP
rs568706140 2146 dbSNP
rs1409207826 2149 dbSNP
rs979169373 2159 dbSNP
rs1030880363 2163 dbSNP
rs956489440 2166 dbSNP
rs1164930707 2167 dbSNP
rs976414485 2177 dbSNP
rs536266430 2179 dbSNP
rs554635506 2181 dbSNP
rs931996529 2182 dbSNP
rs35588725 2188 dbSNP
rs192690949 2189 dbSNP
rs143182969 2190 dbSNP
rs185194343 2191 dbSNP
rs778835254 2194 dbSNP
rs146683181 2195 dbSNP
rs1233980651 2216 dbSNP
rs1440139406 2231 dbSNP
rs1283610003 2238 dbSNP
rs1399588851 2238 dbSNP
rs1467623755 2240 dbSNP
rs1354532038 2244 dbSNP
rs541193058 2252 dbSNP
rs1257354399 2253 dbSNP
rs1424693090 2256 dbSNP
rs1257855046 2257 dbSNP
rs1175071062 2260 dbSNP
rs1480045772 2266 dbSNP
rs968275411 2268 dbSNP
rs1216504796 2270 dbSNP
rs559403108 2271 dbSNP
rs55761341 2276 dbSNP
rs56411057 2277 dbSNP
rs1307272371 2284 dbSNP
rs1272396075 2312 dbSNP
rs1245258932 2315 dbSNP
rs1203722980 2317 dbSNP
rs1315143018 2318 dbSNP
rs1260238618 2320 dbSNP
rs1376314934 2326 dbSNP
rs1486252529 2327 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aacagguaacauagACCCCUa 5'
                        |||||| 
Target 5' -------gcuagagUGGGGAa 3'
1 - 14
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000400068.3 | 3UTR | GCUAGAGUGGGGAAGAUUUCCCCUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
CHOL -0.813 0 -0.900 0 9 Click to see details
UCEC -0.517 0.01 -0.586 0 19 Click to see details
KIRC 0.258 0.02 0.316 0 68 Click to see details
KICH 0.34 0.05 0.432 0.02 25 Click to see details
LIHC 0.209 0.07 0.262 0.03 49 Click to see details
LUAD -0.431 0.08 -0.448 0.07 12 Click to see details
KIRP 0.227 0.11 0.306 0.04 32 Click to see details
THCA 0.153 0.12 0.346 0 59 Click to see details
ESCA 0.361 0.14 0.336 0.16 11 Click to see details
CESC -0.888 0.15 -0.500 0.33 3 Click to see details
BRCA 0.112 0.16 0.126 0.13 84 Click to see details
PCPG -0.85 0.18 -0.500 0.33 3 Click to see details
HNSC -0.111 0.24 -0.045 0.39 42 Click to see details
PAAD -0.357 0.32 -0.400 0.3 4 Click to see details
LUSC 0.068 0.34 0.048 0.39 38 Click to see details
PRAD 0.053 0.36 0.121 0.2 50 Click to see details
BLCA 0.024 0.46 0.156 0.27 18 Click to see details
STAD 0.012 0.47 0.205 0.13 32 Click to see details
STAD 0.012 0.47 0.205 0.13 32 Click to see details
164 hsa-miR-2355-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT190653 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT286477 TAOK1 TAO kinase 1 2 4
MIRT318993 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT345622 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT442513 SYT7 synaptotagmin 7 2 4
MIRT444247 CTNND1 catenin delta 1 2 2
MIRT444780 ECE1 endothelin converting enzyme 1 2 2
MIRT456525 TMEM63A transmembrane protein 63A 2 2
MIRT468960 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT469834 R3HDM4 R3H domain containing 4 2 2
MIRT470027 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT471167 PHB2 prohibitin 2 2 2
MIRT475819 HDGF heparin binding growth factor 2 4
MIRT479389 CDKN1B cyclin dependent kinase inhibitor 1B 2 6
MIRT481747 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT485220 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT487259 CCNF cyclin F 2 2
MIRT489971 MCC mutated in colorectal cancers 2 4
MIRT491399 C1D C1D nuclear receptor corepressor 2 2
MIRT494959 CCDC144A coiled-coil domain containing 144A 2 4
MIRT494979 PPP5D1 PPP5 tetratricopeptide repeat domain containing 1 2 2
MIRT495225 CHST14 carbohydrate sulfotransferase 14 2 2
MIRT496550 TBX15 T-box 15 2 2
MIRT501612 PISD phosphatidylserine decarboxylase 2 2
MIRT509393 TRIM24 tripartite motif containing 24 2 2
MIRT519616 ZNF788 zinc finger family member 788 2 4
MIRT519738 ZNF394 zinc finger protein 394 2 4
MIRT521230 SAR1A secretion associated Ras related GTPase 1A 2 4
MIRT521801 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT526233 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT526932 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT529189 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT529329 ZNF649 zinc finger protein 649 2 2
MIRT529698 MRPL30 mitochondrial ribosomal protein L30 2 2
MIRT529921 TOP1MT DNA topoisomerase I mitochondrial 2 2
MIRT530032 SMC1A structural maintenance of chromosomes 1A 2 2
MIRT530898 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT531621 TM4SF5 transmembrane 4 L six family member 5 2 4
MIRT533132 XIAP X-linked inhibitor of apoptosis 2 2
MIRT533210 WAPAL WAPL cohesin release factor 2 2
MIRT534058 ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 2 2
MIRT535487 PARVB parvin beta 2 2
MIRT536749 HOXD9 homeobox D9 2 2
MIRT551456 CARKD NAD(P)HX dehydratase 2 2
MIRT551858 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT552095 FAM8A1 family with sequence similarity 8 member A1 2 2
MIRT552332 ZNF704 zinc finger protein 704 2 2
MIRT552549 ZFP36L2 ZFP36 ring finger protein like 2 2 2
MIRT561505 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT562702 ZNF415 zinc finger protein 415 2 2
MIRT563052 ZNF138 zinc finger protein 138 2 2
MIRT564592 ZNF791 zinc finger protein 791 2 2
MIRT566422 PIGA phosphatidylinositol glycan anchor biosynthesis class A 2 2
MIRT570176 RCBTB1 RCC1 and BTB domain containing protein 1 2 2
MIRT570866 ZNF525 zinc finger protein 525 2 2
MIRT570875 ZFP1 ZFP1 zinc finger protein 2 2
MIRT571517 ZNF625 zinc finger protein 625 2 2
MIRT572551 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT610894 HINFP histone H4 transcription factor 2 2
MIRT611037 PTGES prostaglandin E synthase 2 2
MIRT611479 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT612419 SP1 Sp1 transcription factor 2 2
MIRT614478 FRMPD3 FERM and PDZ domain containing 3 2 2
MIRT616318 CACNA1A calcium voltage-gated channel subunit alpha1 A 2 2
MIRT616929 ZNF638 zinc finger protein 638 2 2
MIRT618131 GABARAPL3 GABA type A receptor associated protein like 3 pseudogene 2 2
MIRT618452 ZFP30 ZFP30 zinc finger protein 2 4
MIRT620671 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT620713 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT621126 EMC7 ER membrane protein complex subunit 7 2 4
MIRT621443 TOMM22 translocase of outer mitochondrial membrane 22 2 2
MIRT623491 KCTD11 potassium channel tetramerization domain containing 11 2 2
MIRT623783 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT623918 FNBP1L formin binding protein 1 like 2 2
MIRT625723 CXorf38 chromosome X open reading frame 38 2 2
MIRT625778 GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 2 2
MIRT626940 TTR transthyretin 2 2
MIRT627357 TSC22D2 TSC22 domain family member 2 2 2
MIRT632078 ALDH1A2 aldehyde dehydrogenase 1 family member A2 2 2
MIRT633361 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT639793 MVK mevalonate kinase 2 2
MIRT643761 NAGK N-acetylglucosamine kinase 2 2
MIRT644358 NDUFAF6 NADH:ubiquinone oxidoreductase complex assembly factor 6 2 2
MIRT645558 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT646588 ANKRD36 ankyrin repeat domain 36 2 2
MIRT646631 SLC25A46 solute carrier family 25 member 46 2 2
MIRT648066 HSPA6 heat shock protein family A (Hsp70) member 6 2 2
MIRT648142 SUCLG2 succinate-CoA ligase GDP-forming beta subunit 2 2
MIRT648416 MYOZ3 myozenin 3 2 2
MIRT649218 AMMECR1L AMMECR1 like 2 2
MIRT649772 MRPS27 mitochondrial ribosomal protein S27 2 4
MIRT650510 UFM1 ubiquitin fold modifier 1 2 2
MIRT651007 ZNF740 zinc finger protein 740 2 2
MIRT651524 WNT2B Wnt family member 2B 2 2
MIRT652014 TTYH3 tweety family member 3 2 2
MIRT652513 TMEM109 transmembrane protein 109 2 2
MIRT652686 THUMPD3 THUMP domain containing 3 2 2
MIRT652772 TENM3 teneurin transmembrane protein 3 2 2
MIRT653160 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT653765 SIX5 SIX homeobox 5 2 2
MIRT653792 SIRPA signal regulatory protein alpha 2 2
MIRT655649 OAZ2 ornithine decarboxylase antizyme 2 2 2
MIRT656263 MEX3A mex-3 RNA binding family member A 2 2
MIRT657044 KCNH6 potassium voltage-gated channel subfamily H member 6 2 2
MIRT657375 HMGA1 high mobility group AT-hook 1 2 2
MIRT657532 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT657542 GSTO2 glutathione S-transferase omega 2 2 2
MIRT657828 GJD3 gap junction protein delta 3 2 2
MIRT658946 DOK6 docking protein 6 2 2
MIRT660363 BACH2 BTB domain and CNC homolog 2 2 2
MIRT660406 ATXN7L3 ataxin 7 like 3 2 2
MIRT660948 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT661031 AAK1 AP2 associated kinase 1 2 2
MIRT662435 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT668419 FAM217B family with sequence similarity 217 member B 2 2
MIRT669332 BSND barttin CLCNK type accessory beta subunit 2 2
MIRT676105 CLUAP1 clusterin associated protein 1 2 2
MIRT677084 SMIM15 small integral membrane protein 15 2 2
MIRT677127 OGFOD3 2-oxoglutarate and iron dependent oxygenase domain containing 3 2 2
MIRT678001 CPM carboxypeptidase M 2 2
MIRT678531 TMEM78 transmembrane protein 78 2 2
MIRT680000 ZNF860 zinc finger protein 860 2 2
MIRT680098 PXMP4 peroxisomal membrane protein 4 2 2
MIRT686795 SOX12 SRY-box 12 2 2
MIRT698887 SPTBN2 spectrin beta, non-erythrocytic 2 2 2
MIRT699371 SLC30A6 solute carrier family 30 member 6 2 2
MIRT702005 MIDN midnolin 2 2
MIRT708101 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 2 2
MIRT709563 GYG2 glycogenin 2 2 2
MIRT710559 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT710585 CDCA4 cell division cycle associated 4 2 2
MIRT710873 NT5DC1 5'-nucleotidase domain containing 1 2 2
MIRT711876 VASP vasodilator stimulated phosphoprotein 2 2
MIRT712226 RIMS3 regulating synaptic membrane exocytosis 3 2 2
MIRT713211 FAM13A family with sequence similarity 13 member A 2 2
MIRT713261 GPR55 G protein-coupled receptor 55 2 2
MIRT713327 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT713889 RNF19B ring finger protein 19B 2 2
MIRT714015 UBAP2L ubiquitin associated protein 2 like 2 2
MIRT714202 NLRP12 NLR family pyrin domain containing 12 2 2
MIRT714717 VPS8 VPS8, CORVET complex subunit 2 2
MIRT714748 ZNF385D zinc finger protein 385D 2 2
MIRT714806 ARHGEF19 Rho guanine nucleotide exchange factor 19 2 2
MIRT714852 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715717 MRPL4 mitochondrial ribosomal protein L4 2 2
MIRT715852 GRIN2A glutamate ionotropic receptor NMDA type subunit 2A 2 2
MIRT716853 MFSD12 major facilitator superfamily domain containing 12 2 2
MIRT717134 EBPL emopamil binding protein like 2 2
MIRT717248 TMEM246 transmembrane protein 246 2 2
MIRT717997 ZNF79 zinc finger protein 79 2 2
MIRT718341 PURA purine rich element binding protein A 2 2
MIRT719587 TFCP2L1 transcription factor CP2 like 1 2 2
MIRT720520 PTGR2 prostaglandin reductase 2 2 2
MIRT720671 SLC39A13 solute carrier family 39 member 13 2 2
MIRT721213 DCLK3 doublecortin like kinase 3 2 2
MIRT721757 INF2 inverted formin, FH2 and WH2 domain containing 2 2
MIRT721826 POU6F1 POU class 6 homeobox 1 2 2
MIRT722091 SUSD1 sushi domain containing 1 2 2
MIRT722275 LURAP1 leucine rich adaptor protein 1 2 2
MIRT722802 ARHGAP19 Rho GTPase activating protein 19 2 2
MIRT722866 FAM212B family with sequence similarity 212 member B 2 2
MIRT723113 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT724378 NEK8 NIMA related kinase 8 2 2
MIRT732775 PYCR1 pyrroline-5-carboxylate reductase 1 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-2355 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-2355-5p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-2355-5p Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-2355-5p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-2355-5p Gefitinib 123631 NSC715055 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-2355-5p Temozolomide 5394 NSC362856 approved resistant High Glioma tissue
hsa-miR-2355-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-2355-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-2355-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-2355-5p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-2355-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (TOV-112D)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (OVSAHO)

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