pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PRICKLE1   
Synonyms EPM1B, RILP
Description prickle planar cell polarity protein 1
Transcript NM_001144881   
Other Transcripts NM_001144882 , NM_001144883 , NM_153026   
Expression
Putative miRNA Targets on PRICKLE1
3'UTR of PRICKLE1
(miRNA target sites are highlighted)
>PRICKLE1|NM_001144881|3'UTR
   1 CCAAGTAGTGATGCAGAGCATTTGTTTAAAACTTAGCCATTAACCGTCTGAATCGTTTCCTTTTCTTCCGTAGGAAAGTT
  81 GTGAAAATAGTTTAAAGTGCTTTCTTTGCCCATGTAAATGAGAACTCAACTGCTGTTTACAGTGTCAGATTAACATTTGA
 161 AAGGTGTGATTTCTCCAATTTACCCTCTTTGGATGGTGCCAGGTGGACGTGACATCTCGTGCCTGTCCGGTGCGGGTGCG
 241 TTACAGATGGACGTAGCTGCTTTGGTTTTCCAGTCCTCAAGGGAATACTGAAGATGCTGACTGAAGGGGATTGGATGTTG
 321 ATTTTAGAAGATGGAGAACTCCAGCCACCTTTGTAAAGCACTAGTGTTTGTCATTTATGTAAGTCAGGTCGGCTCAGGTC
 401 TTGATAGTCCGTCTTGGTGTGAGGCATGCCTGTCACGATGACCTAGCTAACACTGTGCATCTTATTGTGAGGCCAGCTTG
 481 TCCCCTCGAACCCTCTTTGGCCAGGTAAACATTGTATTGTATCAGCGCCAGCTACAGATTGAAAAAAAAAAACAAAAAAC
 561 ATTGCTATTTATAACTTAGTATTTCATAGACTTAAGTGTATTCCTAATTTAACGGTGCAAATATTAATGTATATACTGTA
 641 CAGTTCAGATTTTAAAGCTGATATTTTTATATCCCTGAATTGTAAGCCGTTTGTTACGCTGCAGTGCTAGATTTGCCAGG
 721 GAACCAGAATTTATGGATGAACTGATTGCTTATATTTTAGTCAGGGTTTATAAATGTAGATGGTCAAATTTACATTGCCT
 801 AGTGATGGAAAATTCAACTTTTTTTGATTTTTTTTTCCAATATTAAAAAAGGCTCTGTATGCATGGTGGGGCTATGTAAG
 881 TACTCTTTAAAACTATGGCCCTATTAATCTTACAAGTGTTACTTATGGGTCAAGCAATGTAAACTGTATAAATGTAAAAA
 961 CAACCCCTCCACACACATAACCCCTGGAATATATGGTAAAAACAAGTAGAAGCTGTTTCAGCGAGTGGGTTTTTTCCCCC
1041 TGCCTGCGGGGGGTGCCTTTCTCATTTTCAGCAAGGTGATGATTATCTCATGGGAAATGACAAAGATCTGCTTTTGTGGC
1121 AGAGGACTTTGTAGATTTGTTATTTTAAGAGAGGTTATTCCTTTTTATTCCTTCCCTCCCACTAATTTGTTGGCCTTTAA
1201 CAGCAATTTTGAAAACTGGGTCTTCTGGTTATGTTTTTGTTTTAAAATCTTTAAATTAGAGGATGCTGTGCCATTGAGTA
1281 CTGTAAGTTAATATGAGGTTCTGGTTCAAGGAAAACTTACGTTGGATCTGAACCAATGAGCAGATATTTTGATATGTGCC
1361 ACTCTTGCATATACATCTCAGTCCTAACTAAAGGTTCTAGTGGCATCCAGGACCTTTAGGGAGGCATTTAATAAACACTT
1441 AATAAATAACAAAACTACCTTTCTGAATATA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugacgucGGAACUGGAGGGUc 5'
                 ||||  ||||||| 
Target 5' ttttattCCTT-CCCTCCCAc 3'
1163 - 1182 149.00 -15.40
2
miRNA  3' ugaCGUCGGAACUGGAGGGUc 5'
             || ||:|||:::|:||| 
Target 5' gtaGCTGCTTTGGTTTTCCAg 3'
253 - 273 126.00 -24.10
3
miRNA  3' ugACGUCG-GAACUGGAGGGUc 5'
            |||||: || ||::| ||| 
Target 5' gcTGCAGTGCTAGATTTGCCAg 3'
698 - 719 111.00 -23.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
308699 142 ClinVar
308692 553 ClinVar
308691 596 ClinVar
308690 614 ClinVar
COSN30193310 16 COSMIC
COSN31499113 28 COSMIC
COSN25711350 46 COSMIC
COSN26990339 52 COSMIC
COSN13394974 55 COSMIC
COSN30471392 61 COSMIC
COSN24294679 69 COSMIC
COSN26505774 70 COSMIC
COSN19696825 91 COSMIC
COSN30103317 110 COSMIC
COSN30161650 122 COSMIC
COSN30101917 125 COSMIC
COSN30105903 127 COSMIC
COSN30512966 149 COSMIC
COSN30157224 159 COSMIC
COSN28575863 164 COSMIC
COSN26465699 166 COSMIC
COSN31573734 173 COSMIC
COSN16128489 175 COSMIC
COSN31555067 239 COSMIC
COSN5943549 246 COSMIC
COSN28805668 261 COSMIC
COSN32056265 448 COSMIC
COSN31780219 541 COSMIC
COSN20109490 542 COSMIC
COSN30604469 619 COSMIC
COSN26441336 640 COSMIC
COSN22780087 647 COSMIC
COSN4729745 650 COSMIC
COSN15451096 1111 COSMIC
COSN19559286 1483 COSMIC
COSN8662732 1522 COSMIC
COSN26308646 1644 COSMIC
COSN26852116 2383 COSMIC
COSN21340580 2521 COSMIC
COSN27788427 2533 COSMIC
COSN1573088 2773 COSMIC
COSN19213661 2977 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs555008439 2 dbSNP
rs567492165 3 dbSNP
rs1352321357 5 dbSNP
rs1169130185 16 dbSNP
rs975572062 19 dbSNP
rs1232020778 24 dbSNP
rs1465823788 29 dbSNP
rs1425258855 32 dbSNP
rs200644857 35 dbSNP
rs1475064590 38 dbSNP
rs372633476 45 dbSNP
rs147122337 46 dbSNP
rs1006433987 54 dbSNP
rs560130870 55 dbSNP
rs1259967666 57 dbSNP
rs1006587388 60 dbSNP
rs889360037 66 dbSNP
rs1213334895 69 dbSNP
rs759888600 70 dbSNP
rs1352919793 73 dbSNP
rs879051249 74 dbSNP
rs542130236 75 dbSNP
rs1313610054 82 dbSNP
rs1303609841 84 dbSNP
rs1043652 91 dbSNP
rs1368228903 103 dbSNP
rs151151770 104 dbSNP
rs1002844712 122 dbSNP
rs1216051756 124 dbSNP
rs572315226 129 dbSNP
rs1270630738 131 dbSNP
rs886049374 142 dbSNP
rs1306521011 148 dbSNP
rs1044446097 149 dbSNP
rs1384475012 163 dbSNP
rs1254545366 166 dbSNP
rs948822186 167 dbSNP
rs1466723783 170 dbSNP
rs1192532849 173 dbSNP
rs1246624194 175 dbSNP
rs1476035237 178 dbSNP
rs1363238484 198 dbSNP
rs1288689511 203 dbSNP
rs933606988 208 dbSNP
rs192612214 209 dbSNP
rs537460102 218 dbSNP
rs893252455 219 dbSNP
rs576421272 228 dbSNP
rs934526849 229 dbSNP
rs1393400042 230 dbSNP
rs1432848178 232 dbSNP
rs886049373 233 dbSNP
rs1339570016 239 dbSNP
rs1050986045 240 dbSNP
rs914697108 246 dbSNP
rs558237556 252 dbSNP
rs1184572649 253 dbSNP
rs1212459153 253 dbSNP
rs1043656 261 dbSNP
rs1448040638 262 dbSNP
rs937371198 268 dbSNP
rs920938635 270 dbSNP
rs1477697276 279 dbSNP
rs975140787 280 dbSNP
rs962774579 287 dbSNP
rs927309210 293 dbSNP
rs761391791 295 dbSNP
rs1162701364 296 dbSNP
rs558821449 296 dbSNP
rs1402570955 307 dbSNP
rs1316093994 309 dbSNP
rs1359894895 311 dbSNP
rs1345271478 318 dbSNP
rs909656134 327 dbSNP
rs984942989 332 dbSNP
rs570071895 335 dbSNP
rs1353105770 345 dbSNP
rs1252600886 355 dbSNP
rs1026542931 360 dbSNP
rs547699182 366 dbSNP
rs1227472724 370 dbSNP
rs1243652315 376 dbSNP
rs1279582201 378 dbSNP
rs1308624577 381 dbSNP
rs768200105 390 dbSNP
rs971387169 391 dbSNP
rs1228030183 395 dbSNP
rs1479934522 397 dbSNP
rs17091220 398 dbSNP
rs1199276265 399 dbSNP
rs568438224 402 dbSNP
rs745482621 407 dbSNP
rs781107806 410 dbSNP
rs1006659962 411 dbSNP
rs1339763564 421 dbSNP
rs1054485349 428 dbSNP
rs141738298 430 dbSNP
rs746977003 436 dbSNP
rs777503447 437 dbSNP
rs755082741 441 dbSNP
rs1446813624 443 dbSNP
rs1402057293 447 dbSNP
rs571674666 448 dbSNP
rs1460568879 454 dbSNP
rs1369470132 455 dbSNP
rs1167349830 458 dbSNP
rs1314444222 482 dbSNP
rs187632148 483 dbSNP
rs1250361995 488 dbSNP
rs998144344 489 dbSNP
rs563966550 492 dbSNP
rs933893865 493 dbSNP
rs1213366181 494 dbSNP
rs1357315340 497 dbSNP
rs921230484 500 dbSNP
rs946241194 502 dbSNP
rs1246641114 503 dbSNP
rs1315078249 504 dbSNP
rs1308388132 505 dbSNP
rs1240742920 507 dbSNP
rs1378531808 508 dbSNP
rs1235704484 511 dbSNP
rs1039758268 516 dbSNP
rs766425066 517 dbSNP
rs1439799236 518 dbSNP
rs1482461479 521 dbSNP
rs941065100 523 dbSNP
rs1295669491 526 dbSNP
rs12658 527 dbSNP
rs750610528 528 dbSNP
rs527422458 533 dbSNP
rs1179668567 539 dbSNP
rs1159827002 541 dbSNP
rs1237676985 542 dbSNP
rs937443151 542 dbSNP
rs767986403 546 dbSNP
rs950820414 551 dbSNP
rs778702730 552 dbSNP
rs68074167 553 dbSNP
rs756462439 553 dbSNP
rs76259006 553 dbSNP
rs778238511 553 dbSNP
rs919431022 553 dbSNP
rs1269673241 554 dbSNP
rs1211446741 560 dbSNP
rs762030087 565 dbSNP
rs1398105770 578 dbSNP
rs1389355537 579 dbSNP
rs1330035068 582 dbSNP
rs1371070079 586 dbSNP
rs1045737690 587 dbSNP
rs1338102977 592 dbSNP
rs757584408 593 dbSNP
rs769616581 596 dbSNP
rs1337547469 599 dbSNP
rs775224782 613 dbSNP
rs886049372 614 dbSNP
rs1353811133 615 dbSNP
rs962510492 618 dbSNP
rs1331057395 635 dbSNP
rs1392173415 650 dbSNP
rs1395931187 667 dbSNP
rs567650778 682 dbSNP
rs1432529493 683 dbSNP
rs1193586837 684 dbSNP
rs1374609915 687 dbSNP
rs909736109 688 dbSNP
rs1013306925 689 dbSNP
rs1394843172 693 dbSNP
rs1462542528 694 dbSNP
rs749474350 697 dbSNP
rs1366021818 698 dbSNP
rs957388280 700 dbSNP
rs1296675050 704 dbSNP
rs1328542199 714 dbSNP
rs147942021 715 dbSNP
rs1418440779 718 dbSNP
rs998904108 724 dbSNP
rs1163979806 733 dbSNP
rs1029735769 737 dbSNP
rs997899927 747 dbSNP
rs966677157 754 dbSNP
rs1263823330 759 dbSNP
rs1474071950 760 dbSNP
rs1476717948 762 dbSNP
rs1020562794 765 dbSNP
rs1192740227 766 dbSNP
rs1418050134 770 dbSNP
rs903312101 775 dbSNP
rs1365190102 779 dbSNP
rs1182165434 780 dbSNP
rs1178435834 781 dbSNP
rs1348816047 799 dbSNP
rs778118882 802 dbSNP
rs1010458078 809 dbSNP
rs1436850323 820 dbSNP
rs1050882586 826 dbSNP
rs1277972303 833 dbSNP
rs1214969723 836 dbSNP
rs1054552580 837 dbSNP
rs746752965 837 dbSNP
rs1274288454 843 dbSNP
rs905980386 851 dbSNP
rs756303597 859 dbSNP
rs1239944757 863 dbSNP
rs1354764639 868 dbSNP
rs1262403686 874 dbSNP
rs1487273455 876 dbSNP
rs1215536384 889 dbSNP
rs1258000491 890 dbSNP
rs1486419122 893 dbSNP
rs1281620608 894 dbSNP
rs899733164 895 dbSNP
rs368596743 897 dbSNP
rs1240084806 898 dbSNP
rs542060460 900 dbSNP
rs1419149956 903 dbSNP
rs1160673284 913 dbSNP
rs551815384 914 dbSNP
rs574754036 926 dbSNP
rs1335371231 929 dbSNP
rs555892431 932 dbSNP
rs1376424556 933 dbSNP
rs749282719 944 dbSNP
rs752821017 949 dbSNP
rs940999777 964 dbSNP
rs1307220528 978 dbSNP
rs73126459 983 dbSNP
rs1395144875 992 dbSNP
rs1224348878 997 dbSNP
rs537803462 1012 dbSNP
rs1046811751 1013 dbSNP
rs756229345 1023 dbSNP
rs1351361190 1029 dbSNP
rs1459805912 1035 dbSNP
rs201368761 1036 dbSNP
rs759701217 1036 dbSNP
rs1158908180 1038 dbSNP
rs1207839858 1040 dbSNP
rs1236475190 1042 dbSNP
rs543795157 1044 dbSNP
rs533279850 1046 dbSNP
rs11181513 1047 dbSNP
rs1235854933 1048 dbSNP
rs1194969186 1053 dbSNP
rs985326328 1054 dbSNP
rs1251828634 1062 dbSNP
rs1396284306 1063 dbSNP
rs182902189 1071 dbSNP
rs751878241 1079 dbSNP
rs1174411803 1082 dbSNP
rs1358729222 1089 dbSNP
rs1443240008 1098 dbSNP
rs953774320 1105 dbSNP
rs950261958 1108 dbSNP
rs557897526 1111 dbSNP
rs916127531 1119 dbSNP
rs1450367743 1123 dbSNP
rs922398634 1132 dbSNP
rs1286824699 1144 dbSNP
rs1206051437 1148 dbSNP
rs1350263292 1149 dbSNP
rs1217197587 1152 dbSNP
rs991759765 1153 dbSNP
rs1307669860 1160 dbSNP
rs1206158238 1162 dbSNP
rs957334610 1167 dbSNP
rs1255806727 1168 dbSNP
rs192161217 1170 dbSNP
rs1456929665 1176 dbSNP
rs1193786766 1181 dbSNP
rs572465188 1182 dbSNP
rs1479290129 1185 dbSNP
rs1371905497 1196 dbSNP
rs886049371 1218 dbSNP
rs1189800722 1219 dbSNP
rs1424929957 1225 dbSNP
rs1032968000 1226 dbSNP
rs1021057976 1263 dbSNP
rs977431300 1265 dbSNP
rs1398461960 1268 dbSNP
rs957623433 1273 dbSNP
rs967417940 1275 dbSNP
rs1669933 1283 dbSNP
rs376939377 1290 dbSNP
rs572638131 1290 dbSNP
rs1274236796 1291 dbSNP
rs886049370 1292 dbSNP
rs1362363197 1293 dbSNP
rs1399836769 1294 dbSNP
rs1358234458 1298 dbSNP
rs998398252 1320 dbSNP
rs1316939816 1321 dbSNP
rs899681597 1321 dbSNP
rs1213698140 1326 dbSNP
rs1001695167 1330 dbSNP
rs1394001285 1334 dbSNP
rs1018569406 1345 dbSNP
rs1219973739 1355 dbSNP
rs1191167960 1361 dbSNP
rs535656837 1365 dbSNP
rs568374912 1368 dbSNP
rs1244291615 1374 dbSNP
rs1165686513 1378 dbSNP
rs1392944325 1383 dbSNP
rs1403719056 1388 dbSNP
rs1194366877 1392 dbSNP
rs1051453 1394 dbSNP
rs1345779107 1398 dbSNP
rs1014775022 1400 dbSNP
rs929649582 1414 dbSNP
rs1339396534 1415 dbSNP
rs1233546140 1442 dbSNP
rs1285641906 1448 dbSNP
rs3168685 1450 dbSNP
rs1353605272 1455 dbSNP
rs1213364743 1469 dbSNP
rs1289774130 1475 dbSNP
rs372755792 1483 dbSNP
rs1219197629 1489 dbSNP
rs1261511113 1493 dbSNP
rs1279757567 1495 dbSNP
rs1217497370 1497 dbSNP
rs1188886557 1502 dbSNP
rs941251146 1511 dbSNP
rs1341403761 1515 dbSNP
rs1471845433 1530 dbSNP
rs1270627607 1549 dbSNP
rs1046167228 1553 dbSNP
rs1338217432 1556 dbSNP
rs888405275 1556 dbSNP
rs776302613 1558 dbSNP
rs1415056705 1563 dbSNP
rs1374430352 1565 dbSNP
rs932529413 1567 dbSNP
rs763728080 1569 dbSNP
rs922440625 1571 dbSNP
rs976505476 1572 dbSNP
rs945120413 1574 dbSNP
rs1446575594 1578 dbSNP
rs183227145 1581 dbSNP
rs1354989398 1583 dbSNP
rs1411101483 1583 dbSNP
rs1422280184 1593 dbSNP
rs1212117450 1598 dbSNP
rs760160332 1613 dbSNP
rs936255852 1623 dbSNP
rs1475367380 1624 dbSNP
rs1233549804 1626 dbSNP
rs1441680977 1628 dbSNP
rs1156738735 1631 dbSNP
rs1379691568 1634 dbSNP
rs1435092829 1637 dbSNP
rs1174121071 1639 dbSNP
rs926231965 1640 dbSNP
rs977380353 1646 dbSNP
rs796743673 1650 dbSNP
rs1033254961 1655 dbSNP
rs967364064 1659 dbSNP
rs1486139811 1678 dbSNP
rs1257005975 1683 dbSNP
rs1208115066 1690 dbSNP
rs1439698471 1693 dbSNP
rs559867316 1694 dbSNP
rs970230192 1703 dbSNP
rs775005543 1704 dbSNP
rs1459142716 1715 dbSNP
rs751953066 1722 dbSNP
rs75928604 1723 dbSNP
rs1454659903 1725 dbSNP
rs1200684630 1728 dbSNP
rs527344391 1733 dbSNP
rs897266568 1735 dbSNP
rs1015601189 1748 dbSNP
rs964183705 1750 dbSNP
rs1005581232 1754 dbSNP
rs1168130200 1767 dbSNP
rs1402090726 1769 dbSNP
rs1018097912 1775 dbSNP
rs1330094540 1778 dbSNP
rs1400154011 1779 dbSNP
rs1315949505 1782 dbSNP
rs566464447 1786 dbSNP
rs771907608 1787 dbSNP
rs548356397 1792 dbSNP
rs529920987 1796 dbSNP
rs1304122363 1808 dbSNP
rs562710168 1809 dbSNP
rs566987905 1814 dbSNP
rs1354447170 1815 dbSNP
rs1300648682 1816 dbSNP
rs1320288406 1823 dbSNP
rs548727706 1825 dbSNP
rs745776678 1837 dbSNP
rs906202973 1859 dbSNP
rs530346632 1861 dbSNP
rs532325264 1864 dbSNP
rs1465597792 1866 dbSNP
rs1488738760 1868 dbSNP
rs945136342 1869 dbSNP
rs145255245 1874 dbSNP
rs1432370336 1875 dbSNP
rs1194131218 1879 dbSNP
rs774311546 1880 dbSNP
rs1055949678 1881 dbSNP
rs1169277525 1884 dbSNP
rs936202063 1885 dbSNP
rs770898842 1888 dbSNP
rs190217366 1892 dbSNP
rs1459033576 1895 dbSNP
rs1295800870 1897 dbSNP
rs564473531 1898 dbSNP
rs1413519745 1902 dbSNP
rs540407499 1903 dbSNP
rs1299195699 1906 dbSNP
rs1342566886 1917 dbSNP
rs1217058042 1925 dbSNP
rs149975921 1933 dbSNP
rs1322400673 1937 dbSNP
rs1247156452 1943 dbSNP
rs1471266574 1944 dbSNP
rs1263543593 1945 dbSNP
rs1488118374 1947 dbSNP
rs1217014730 1950 dbSNP
rs1233562498 1952 dbSNP
rs1487211951 1965 dbSNP
rs572457462 1965 dbSNP
rs1192447154 1968 dbSNP
rs1414160468 1969 dbSNP
rs1425031474 1970 dbSNP
rs1162109287 1973 dbSNP
rs1367168625 1973 dbSNP
rs977189563 1976 dbSNP
rs1203852672 1993 dbSNP
rs1456401688 1995 dbSNP
rs964156770 2003 dbSNP
rs1274913968 2007 dbSNP
rs1214105402 2016 dbSNP
rs1362822749 2020 dbSNP
rs911317404 2036 dbSNP
rs983939642 2041 dbSNP
rs1310300039 2043 dbSNP
rs1225167806 2045 dbSNP
rs553859437 2046 dbSNP
rs952544623 2048 dbSNP
rs111928412 2049 dbSNP
rs1320990127 2050 dbSNP
rs1240753248 2053 dbSNP
rs1288130284 2066 dbSNP
rs144959796 2066 dbSNP
rs1373571331 2078 dbSNP
rs1215703758 2088 dbSNP
rs1025530366 2089 dbSNP
rs139544221 2091 dbSNP
rs1484032838 2093 dbSNP
rs574688977 2100 dbSNP
rs749062636 2103 dbSNP
rs1012350405 2105 dbSNP
rs1439826027 2106 dbSNP
rs1179808759 2108 dbSNP
rs778208757 2111 dbSNP
rs369379331 2112 dbSNP
rs1398742709 2143 dbSNP
rs1418190599 2146 dbSNP
rs1005651778 2148 dbSNP
rs1359919935 2150 dbSNP
rs1328596797 2156 dbSNP
rs1301361111 2158 dbSNP
rs894881881 2162 dbSNP
rs1349709907 2170 dbSNP
rs2053943 2173 dbSNP
rs1374590468 2175 dbSNP
rs1239080445 2181 dbSNP
rs996739215 2188 dbSNP
rs146751664 2189 dbSNP
rs904701930 2195 dbSNP
rs1178119926 2200 dbSNP
rs61924366 2202 dbSNP
rs946311748 2203 dbSNP
rs143526581 2208 dbSNP
rs182962207 2210 dbSNP
rs1263499928 2211 dbSNP
rs1217629861 2212 dbSNP
rs942722501 2230 dbSNP
rs911288795 2233 dbSNP
rs755474023 2234 dbSNP
rs984209607 2235 dbSNP
rs566530237 2236 dbSNP
rs139917735 2237 dbSNP
rs146444442 2248 dbSNP
rs1237501741 2249 dbSNP
rs1275416194 2250 dbSNP
rs1372610779 2251 dbSNP
rs77272764 2257 dbSNP
rs1217321316 2261 dbSNP
rs1442331067 2264 dbSNP
rs970653834 2267 dbSNP
rs1318163453 2269 dbSNP
rs1025341174 2275 dbSNP
rs150550386 2277 dbSNP
rs1456967269 2278 dbSNP
rs117254564 2281 dbSNP
rs1247867487 2286 dbSNP
rs984165035 2290 dbSNP
rs73126453 2293 dbSNP
rs750770045 2300 dbSNP
rs1000577006 2301 dbSNP
rs370263993 2303 dbSNP
rs564142136 2308 dbSNP
rs1172847284 2314 dbSNP
rs1421549641 2316 dbSNP
rs902305105 2320 dbSNP
rs1409495627 2323 dbSNP
rs1351559871 2331 dbSNP
rs145126550 2331 dbSNP
rs142622811 2339 dbSNP
rs546139033 2340 dbSNP
rs117114511 2355 dbSNP
rs1174308271 2364 dbSNP
rs560160405 2364 dbSNP
rs1041704731 2381 dbSNP
rs1228457256 2383 dbSNP
rs1291152654 2391 dbSNP
rs191123770 2393 dbSNP
rs889800776 2396 dbSNP
rs1219776988 2405 dbSNP
rs892263269 2409 dbSNP
rs1048461892 2412 dbSNP
rs1196076701 2414 dbSNP
rs1000563546 2421 dbSNP
rs1349558220 2423 dbSNP
rs1475091503 2423 dbSNP
rs1415822250 2425 dbSNP
rs904990412 2426 dbSNP
rs931385379 2429 dbSNP
rs1360892893 2437 dbSNP
rs949103263 2442 dbSNP
rs917602594 2451 dbSNP
rs1325507590 2455 dbSNP
rs1057498401 2457 dbSNP
rs1312133600 2461 dbSNP
rs758444670 2463 dbSNP
rs918698499 2465 dbSNP
rs972549136 2466 dbSNP
rs940256544 2474 dbSNP
rs908674407 2477 dbSNP
rs1354862188 2478 dbSNP
rs1219325053 2480 dbSNP
rs1284065717 2487 dbSNP
rs1446669076 2493 dbSNP
rs1188275211 2498 dbSNP
rs574625750 2501 dbSNP
rs949256701 2509 dbSNP
rs917818637 2510 dbSNP
rs991145468 2514 dbSNP
rs1398430221 2516 dbSNP
rs556303664 2517 dbSNP
rs760306779 2526 dbSNP
rs1031959907 2529 dbSNP
rs1156621240 2531 dbSNP
rs1383748840 2541 dbSNP
rs921372217 2545 dbSNP
rs979105295 2547 dbSNP
rs1338159593 2554 dbSNP
rs1314950878 2557 dbSNP
rs148420846 2561 dbSNP
rs760330282 2577 dbSNP
rs1375993475 2585 dbSNP
rs144508812 2593 dbSNP
rs1281069045 2598 dbSNP
rs1440756988 2600 dbSNP
rs2708059 2603 dbSNP
rs1422704392 2605 dbSNP
rs1176497661 2606 dbSNP
rs187054245 2608 dbSNP
rs1478257092 2609 dbSNP
rs1173964217 2618 dbSNP
rs200768720 2624 dbSNP
rs58364296 2625 dbSNP
rs1399690486 2626 dbSNP
rs554018745 2626 dbSNP
rs1331476542 2627 dbSNP
rs11404256 2632 dbSNP
rs1305543591 2632 dbSNP
rs1364539110 2632 dbSNP
rs1401598329 2632 dbSNP
rs1449624097 2632 dbSNP
rs397811612 2632 dbSNP
rs1199389587 2633 dbSNP
rs1482029425 2637 dbSNP
rs1032135686 2638 dbSNP
rs1459186644 2640 dbSNP
rs1252542635 2644 dbSNP
rs572870708 2645 dbSNP
rs1230325631 2659 dbSNP
rs1002125140 2665 dbSNP
rs1319177159 2667 dbSNP
rs1019831446 2668 dbSNP
rs545230106 2672 dbSNP
rs142688058 2673 dbSNP
rs1171010278 2676 dbSNP
rs1313644486 2678 dbSNP
rs1463664062 2683 dbSNP
rs1395654905 2688 dbSNP
rs536321516 2702 dbSNP
rs568997831 2707 dbSNP
rs556430720 2708 dbSNP
rs180941982 2719 dbSNP
rs1404548625 2720 dbSNP
rs1279130142 2724 dbSNP
rs1399388187 2728 dbSNP
rs897216764 2738 dbSNP
rs1476025188 2739 dbSNP
rs11181512 2750 dbSNP
rs1037542314 2754 dbSNP
rs538466583 2755 dbSNP
rs571460151 2756 dbSNP
rs138689285 2759 dbSNP
rs1193926870 2761 dbSNP
rs1264952858 2762 dbSNP
rs189360392 2766 dbSNP
rs887396494 2769 dbSNP
rs560098826 2775 dbSNP
rs372777083 2776 dbSNP
rs1458887687 2777 dbSNP
rs1165563677 2788 dbSNP
rs1195831001 2800 dbSNP
rs530104841 2803 dbSNP
rs1458624796 2806 dbSNP
rs925224076 2811 dbSNP
rs1342628244 2819 dbSNP
rs1257915108 2826 dbSNP
rs1197150339 2828 dbSNP
rs1294970373 2831 dbSNP
rs975865112 2832 dbSNP
rs562643643 2835 dbSNP
rs944145302 2836 dbSNP
rs1217076521 2839 dbSNP
rs1285130550 2840 dbSNP
rs538292842 2842 dbSNP
rs1484705488 2862 dbSNP
rs1185384280 2869 dbSNP
rs912545895 2875 dbSNP
rs770988760 2879 dbSNP
rs988140950 2888 dbSNP
rs567564071 2896 dbSNP
rs966360081 2898 dbSNP
rs1309263563 2908 dbSNP
rs1020635180 2910 dbSNP
rs969603061 2911 dbSNP
rs976246005 2915 dbSNP
rs965857909 2918 dbSNP
rs1397918692 2919 dbSNP
rs1312753750 2922 dbSNP
rs1381947951 2927 dbSNP
rs1240550771 2931 dbSNP
rs866200910 2931 dbSNP
rs1020201695 2935 dbSNP
rs555766994 2938 dbSNP
rs1391976096 2944 dbSNP
rs1023468349 2949 dbSNP
rs34120942 2951 dbSNP
rs544748550 2951 dbSNP
rs773086939 2952 dbSNP
rs1256298032 2958 dbSNP
rs1483939622 2961 dbSNP
rs1201247449 2966 dbSNP
rs1241768675 2968 dbSNP
rs1007084498 2972 dbSNP
rs117521309 2974 dbSNP
rs1162405327 2976 dbSNP
rs1410578009 2978 dbSNP
rs1456097621 2979 dbSNP
rs1365134245 2980 dbSNP
rs1417772314 2980 dbSNP
rs565518805 2981 dbSNP
rs1181921207 2982 dbSNP
rs1014596103 2983 dbSNP
rs1004574130 2984 dbSNP
rs1438473148 2989 dbSNP
rs1235827090 2993 dbSNP
rs147534900 2998 dbSNP
rs573596628 3001 dbSNP
rs1048647838 3006 dbSNP
rs995483745 3011 dbSNP
rs769848547 3022 dbSNP
rs1370907968 3027 dbSNP
rs370969768 3039 dbSNP
rs1301465403 3041 dbSNP
rs376514105 3043 dbSNP
rs1221113466 3044 dbSNP
rs748366241 3045 dbSNP
rs1261992295 3048 dbSNP
rs1262642188 3050 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugacgucggaacuggAGGGUc 5'
                         |: || 
Target 5' -caaagugcaggggaUUACAg 3'
1 - 20
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000455697.1 | 3UTR | CAAAGUGCAGGGGAUUACAGGCAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

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