pre-miRNA Information
pre-miRNA hsa-mir-3120   
Genomic Coordinates chr1: 172138808 - 172138888
Description Homo sapiens miR-3120 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3120-5p
Sequence 13| CCUGUCUGUGCCUGCUGUACA |33
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 19 1 + 172138838 26449202, 27587585 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26637643 8 COSMIC
COSN31603497 11 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs750386761 8 dbSNP
rs760725207 9 dbSNP
rs766486759 10 dbSNP
rs754055278 12 dbSNP
rs755288536 19 dbSNP
rs754726014 21 dbSNP
Putative Targets

Gene Information
Gene Symbol PHF21B   
Synonyms BHC80L, PHF4
Description PHD finger protein 21B
Transcript NM_001135862   
Other Transcripts NM_138415   
Expression
Putative miRNA Targets on PHF21B
3'UTR of PHF21B
(miRNA target sites are highlighted)
>PHF21B|NM_001135862|3'UTR
   1 CCCCGAGGGACCAGTCTTCATACCCACGGAAAGTTATTGGGACCCTGCTTACACAGCCTGGGGGTTCTGTCGGCCTTAAT
  81 TCATAAACACTATGAATTTCAGACAAAAATTAACCAGACAGAGGAGAGGAGGGAGGAAGAGCTGGGCGAGAGGCCTAGAG
 161 CCAGGACCAGGTGGGGGTGCGGCCCTGTGCCCTCCAAATTCACAGGGGGTACCTAGGAGCCAGGTGGGGTACGACAGGCT
 241 GGGGCACACAGTCTCCCCCCGGCCACCTCGGGGCTGCCTGGGCCTCTGGCTTCCAGGCCCTGCTCTCCACGGCCTCCCTC
 321 TGGCCCGTTGGAGGGGCAGGCTGAGGCTGTGGAGGGGACAAGCACGCCCCCCAGAACGCAGTCTCCACTGAGGGCACCGC
 401 CTATTGGTGTCCTGTGGGAGGGCGAGCTGAGAACACATGGACTAGCTGAGTGGTAGCGGTAGTTGGGACGAGAAGCGGGG
 481 TAGTGGATCTAGGTAGTTCCTCAATGCCCCACGCTCCTAGGAGGTCCCCCTGGGGTGGGCGGGCGGGCCTGGGGCACTCC
 561 GTCGCCTTTGCAGAACCACCTGGGCCCCTTTCTGTCAGTATTATTAGGGTTACGAATTGCAGCTGTTTAACTTGAAAGAC
 641 ACTGTCGGAGGTGAGCATCTGGGCGCCGGGACGCTGCAGTGATCCCCGCCAGAGCCTGTGCCCTTCCTGCTCCGTCTTTG
 721 GGGTCCTCAAGGCTGCCTCCTTCCTTTTGCCAATCTCTTGGACTCAGTTTGCCGTTGATGCGTTTTTCTCATGGAGTTTC
 801 TGGGCAGAGTGGAGCTGCAACCCTGTTGTGGGGGGCAGCATTTGGCAGGTTTTCTCCTTGGGGTTGAATCATTCAACTTA
 881 ACGACTGAAGCCCTTTCTTGTCTCCTTTGGAAGAGCCGATAAGTATTCCACTCCTCCCTTCTTGCCAGTGCAGACACTAT
 961 GCCAAAAAATAACTTCACACTTTTGTATGGCGTTTTTATTGTGAGATATTTAATGTGAATGGTTGGGGGGACTCTGGCTG
1041 ACTTCCTTTCTGCTTCTAGTAGTCTCTGCTTCAAGGTACAAATGGGAACACCTCCCCTCGGGAAGCCTGGCCAAGCTGGA
1121 AGATCCGGCAGGTTTTTTACGAGCCGGGTGGAGGGTTGGGGAGGAAAGAAAGGGCGGTGGCTCGGGAGGTTCCGGCCTTC
1201 GGGGACCAGACTTGCTGCCAAGGGCTTCTGCATCCAGGGTGGGCAGTGGCAGCTTGTCACCCTTGCCCGATTCCCACATC
1281 CCAGTCCTGAGGGACTCAGCACAACAGGATAAGCGTCCAGGAGCCACGGGCTCCCACCCCGAGCATATCACATGGTGCCG
1361 AATTGCACTGAACACGCGTGTGTGCATCGCACGCGGCCACGACCACAGACACGCATGCACACACGCAGAGGTGCAGAGCG
1441 AGGAGGCCGGCAAATCCCGCAGCTGCCACGGTCCCTCCTGTCATTCTCACGACTCCGGGAGAAACTGTGCTGTATGATAC
1521 AGATCTATTTTAATACACTTACCACTGGGTGAACAAGATTTTTATATTCTTTTATTGATGAACAAAGTGAACCGTGTGAG
1601 GCACACGTCTTCTATATTGGCTACTCTGTGCCAAGTATGCATTACCGCGTGGCTTGCGATGTCCATGTCTTCAGCTTCCT
1681 TTTCTGTTGGTTTGGTTTTCTTCGCGGATGGATTGAGTTACATGTTTTAACAGTGTAATGGGAGGATCTGAAAGGTTGGA
1761 CCCGGGAGGGGTAGCTGCCGATGTGTCTTGAGATTGTTAGGTTTTTTTTGGACCAAGGAGGACCGTCCAGTGGGTAGTGA
1841 GGATAGAGAAAAAGTGTTTGTCTTAAATACGCCAATGTAGTTTTCCTTCTTTACAATGTATTAAACTCGATCGATGATTT
1921 CAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acaUGUCGUCCGU--GUCUGUCc 5'
             |||  |  :|  ||||||| 
Target 5' cagACAAAAATTAACCAGACAGa 3'
100 - 122 144.00 -9.50
2
miRNA  3' acaUGUC-GUCC--GUGUCUGUcc 5'
             :|:| || |  ||||||||  
Target 5' cacGCGGCCACGACCACAGACAcg 3'
1390 - 1413 136.00 -15.40
3
miRNA  3' acAUGUCGUCCG----UGUCUGUCc 5'
            |||: |||||    :|| |||| 
Target 5' ggTACGACAGGCTGGGGCACACAGt 3'
228 - 252 133.00 -17.76
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30171737 5 COSMIC
COSN31509757 9 COSMIC
COSN30526670 19 COSMIC
COSN30492581 25 COSMIC
COSN30484730 51 COSMIC
COSN26988849 70 COSMIC
COSN13920334 72 COSMIC
COSN30466700 74 COSMIC
COSN30178801 85 COSMIC
COSN1262855 122 COSMIC
COSN30165566 124 COSMIC
COSN30464007 132 COSMIC
COSN28765937 254 COSMIC
COSN9167044 303 COSMIC
COSN19192652 377 COSMIC
COSN17007471 467 COSMIC
COSN32063835 544 COSMIC
COSN1262854 608 COSMIC
COSN31522557 626 COSMIC
COSN26664715 660 COSMIC
COSN30176371 774 COSMIC
COSN28770484 779 COSMIC
COSN30158106 822 COSMIC
COSN28768182 857 COSMIC
COSN31568680 886 COSMIC
COSN31531610 1127 COSMIC
COSN20117541 1180 COSMIC
COSN31531222 1336 COSMIC
COSN30158017 1388 COSMIC
COSN4974682 1393 COSMIC
COSN10031286 1662 COSMIC
COSN8019981 1703 COSMIC
COSN19660877 1706 COSMIC
COSN31513220 1780 COSMIC
COSN31609688 1912 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs201416535 3 dbSNP
rs776445465 4 dbSNP
rs1248785934 5 dbSNP
rs768397129 7 dbSNP
rs1481409960 8 dbSNP
rs1274983329 9 dbSNP
rs1209504772 12 dbSNP
rs1234161992 15 dbSNP
rs1233569670 19 dbSNP
rs775058732 23 dbSNP
rs745825547 24 dbSNP
rs562305338 27 dbSNP
rs192698929 28 dbSNP
rs749063872 37 dbSNP
rs921675817 41 dbSNP
rs1218537214 44 dbSNP
rs1392978017 45 dbSNP
rs1263730397 47 dbSNP
rs781433225 48 dbSNP
rs758378782 49 dbSNP
rs372383030 52 dbSNP
rs995093464 57 dbSNP
rs1269623965 63 dbSNP
rs1278753397 65 dbSNP
rs1217833753 71 dbSNP
rs557684878 72 dbSNP
rs1017969995 83 dbSNP
rs1159657607 85 dbSNP
rs1345062917 86 dbSNP
rs1429297770 90 dbSNP
rs1286576222 100 dbSNP
rs984126986 103 dbSNP
rs199532307 111 dbSNP
rs1441164919 119 dbSNP
rs970973936 120 dbSNP
rs1330015983 123 dbSNP
rs149436594 123 dbSNP
rs779234668 133 dbSNP
rs1241999733 137 dbSNP
rs1284719955 141 dbSNP
rs1042057600 146 dbSNP
rs537337630 147 dbSNP
rs1267286393 148 dbSNP
rs578151693 173 dbSNP
rs893037488 174 dbSNP
rs557906681 176 dbSNP
rs1401732101 180 dbSNP
rs534430892 181 dbSNP
rs1399454206 191 dbSNP
rs1464421729 197 dbSNP
rs1427642091 199 dbSNP
rs959488714 206 dbSNP
rs1032381795 207 dbSNP
rs796156878 208 dbSNP
rs1000924039 209 dbSNP
rs189322342 211 dbSNP
rs1372418657 216 dbSNP
rs548575912 223 dbSNP
rs1020094863 229 dbSNP
rs535380996 232 dbSNP
rs1258673294 239 dbSNP
rs1197885108 241 dbSNP
rs1271395979 242 dbSNP
rs41278899 244 dbSNP
rs890366757 248 dbSNP
rs950287985 250 dbSNP
rs1305570252 252 dbSNP
rs1051465093 253 dbSNP
rs3747223 254 dbSNP
rs1415096614 255 dbSNP
rs952299373 255 dbSNP
rs1475185192 256 dbSNP
rs1366547603 257 dbSNP
rs868817086 258 dbSNP
rs1037456599 260 dbSNP
rs1353561453 261 dbSNP
rs1439674098 261 dbSNP
rs184794215 261 dbSNP
rs201025653 261 dbSNP
rs908049113 269 dbSNP
rs890843395 270 dbSNP
rs3747222 273 dbSNP
rs564328484 274 dbSNP
rs949691866 276 dbSNP
rs1436314915 277 dbSNP
rs918167090 278 dbSNP
rs990815363 282 dbSNP
rs1485617750 283 dbSNP
rs1186496347 290 dbSNP
rs1415012505 299 dbSNP
rs569686056 301 dbSNP
rs1168003620 303 dbSNP
rs547581237 305 dbSNP
rs1407903507 307 dbSNP
rs925248392 310 dbSNP
rs528607122 311 dbSNP
rs1054366577 316 dbSNP
rs979945184 319 dbSNP
rs966792402 320 dbSNP
rs191761024 327 dbSNP
rs905845374 328 dbSNP
rs41278897 336 dbSNP
rs1046263493 338 dbSNP
rs1221201867 339 dbSNP
rs1281476188 344 dbSNP
rs370257847 349 dbSNP
rs1423388356 353 dbSNP
rs1010055618 360 dbSNP
rs954642876 365 dbSNP
rs1160645284 366 dbSNP
rs1030259174 377 dbSNP
rs778494733 378 dbSNP
rs996052595 381 dbSNP
rs1174039536 387 dbSNP
rs1177945156 398 dbSNP
rs900187002 399 dbSNP
rs543143258 411 dbSNP
rs574021525 415 dbSNP
rs1362337503 423 dbSNP
rs1210624128 428 dbSNP
rs1317698385 429 dbSNP
rs1324818863 432 dbSNP
rs1311367105 436 dbSNP
rs563520984 438 dbSNP
rs886170850 450 dbSNP
rs1048401627 457 dbSNP
rs963707512 458 dbSNP
rs41278895 459 dbSNP
rs3810628 467 dbSNP
rs1307810240 468 dbSNP
rs570012125 469 dbSNP
rs1221574720 470 dbSNP
rs756707077 476 dbSNP
rs187249346 477 dbSNP
rs1282940156 478 dbSNP
rs955155591 479 dbSNP
rs1303915265 480 dbSNP
rs1020421595 482 dbSNP
rs557943855 484 dbSNP
rs957190558 486 dbSNP
rs1454234826 500 dbSNP
rs1032952787 507 dbSNP
rs1001440867 511 dbSNP
rs534846391 512 dbSNP
rs925302441 513 dbSNP
rs979444777 516 dbSNP
rs1157094201 522 dbSNP
rs1425617725 523 dbSNP
rs1415934166 524 dbSNP
rs912311320 525 dbSNP
rs1014635793 526 dbSNP
rs1278234836 528 dbSNP
rs571810838 528 dbSNP
rs1218348146 529 dbSNP
rs1488453352 530 dbSNP
rs1047284013 531 dbSNP
rs569626847 531 dbSNP
rs1284856540 532 dbSNP
rs555088122 535 dbSNP
rs929748772 536 dbSNP
rs1322970051 537 dbSNP
rs535190293 540 dbSNP
rs1228200484 541 dbSNP
rs930834724 541 dbSNP
rs973724252 544 dbSNP
rs557970730 545 dbSNP
rs1400986832 546 dbSNP
rs1360195888 547 dbSNP
rs1287308281 550 dbSNP
rs1180835454 551 dbSNP
rs1361940606 552 dbSNP
rs945478331 554 dbSNP
rs943644091 557 dbSNP
rs866504877 559 dbSNP
rs913978178 560 dbSNP
rs1350494165 561 dbSNP
rs1165415671 562 dbSNP
rs987254792 563 dbSNP
rs954527256 564 dbSNP
rs1415578167 565 dbSNP
rs1195653056 576 dbSNP
rs986492600 579 dbSNP
rs955208595 586 dbSNP
rs913021603 589 dbSNP
rs1234492415 595 dbSNP
rs1293354540 602 dbSNP
rs1030144602 605 dbSNP
rs974670109 608 dbSNP
rs569667656 610 dbSNP
rs1333601360 613 dbSNP
rs964609518 614 dbSNP
rs988542849 620 dbSNP
rs1262074551 624 dbSNP
rs1480766412 631 dbSNP
rs957221080 637 dbSNP
rs1202963510 643 dbSNP
rs1016366493 646 dbSNP
rs1486606111 646 dbSNP
rs879132406 647 dbSNP
rs1265454748 650 dbSNP
rs1005882610 652 dbSNP
rs1296790691 654 dbSNP
rs970007853 654 dbSNP
rs1377709027 655 dbSNP
rs115920086 664 dbSNP
rs1014296154 665 dbSNP
rs539736848 666 dbSNP
rs1013249676 667 dbSNP
rs1219685828 668 dbSNP
rs1307682505 670 dbSNP
rs1047829236 672 dbSNP
rs1349705098 673 dbSNP
rs896677499 679 dbSNP
rs570720413 685 dbSNP
rs562124514 687 dbSNP
rs527532662 688 dbSNP
rs1368405112 690 dbSNP
rs1293084669 692 dbSNP
rs1484669293 706 dbSNP
rs539605176 709 dbSNP
rs943508386 713 dbSNP
rs755335951 714 dbSNP
rs1392267201 716 dbSNP
rs754054010 722 dbSNP
rs1168684720 723 dbSNP
rs913849760 726 dbSNP
rs986920689 728 dbSNP
rs182909720 734 dbSNP
rs934033886 737 dbSNP
rs923127678 739 dbSNP
rs974555411 744 dbSNP
rs1296691227 752 dbSNP
rs1290090474 755 dbSNP
rs1465976483 758 dbSNP
rs6007365 774 dbSNP
rs730773 779 dbSNP
rs985080442 781 dbSNP
rs192305250 782 dbSNP
rs1279394786 784 dbSNP
rs1345614272 791 dbSNP
rs543415238 797 dbSNP
rs867210767 798 dbSNP
rs1485546249 799 dbSNP
rs1184868781 800 dbSNP
rs767527106 818 dbSNP
rs1454892968 820 dbSNP
rs1192524869 827 dbSNP
rs896228377 829 dbSNP
rs1033835125 830 dbSNP
rs1160390773 835 dbSNP
rs1345136117 836 dbSNP
rs1452376294 840 dbSNP
rs1002328014 846 dbSNP
rs1317997336 847 dbSNP
rs147605628 848 dbSNP
rs189041064 849 dbSNP
rs1043983278 851 dbSNP
rs993138709 855 dbSNP
rs762980 857 dbSNP
rs1235881610 863 dbSNP
rs1316292108 864 dbSNP
rs1313059297 871 dbSNP
rs892479198 876 dbSNP
rs1188231514 878 dbSNP
rs1438859896 879 dbSNP
rs1026290103 882 dbSNP
rs1251382713 883 dbSNP
rs994759208 884 dbSNP
rs1178165289 892 dbSNP
rs1333312438 895 dbSNP
rs572343649 900 dbSNP
rs762979 901 dbSNP
rs1419466288 904 dbSNP
rs184066223 904 dbSNP
rs111813571 917 dbSNP
rs890601287 918 dbSNP
rs943225476 919 dbSNP
rs775065646 920 dbSNP
rs1467374325 921 dbSNP
rs1444045721 931 dbSNP
rs41278893 935 dbSNP
rs945633407 936 dbSNP
rs984744415 938 dbSNP
rs1295187110 951 dbSNP
rs892695828 953 dbSNP
rs566170368 957 dbSNP
rs1287934025 959 dbSNP
rs1439813257 962 dbSNP
rs868799725 963 dbSNP
rs918960416 969 dbSNP
rs1232714185 970 dbSNP
rs780867812 978 dbSNP
rs1190783539 985 dbSNP
rs935643720 990 dbSNP
rs1475215464 991 dbSNP
rs1452064321 992 dbSNP
rs1411129576 1001 dbSNP
rs1239416799 1003 dbSNP
rs1411339543 1008 dbSNP
rs925731905 1014 dbSNP
rs1437829746 1015 dbSNP
rs1353764103 1022 dbSNP
rs371145769 1023 dbSNP
rs1314588510 1025 dbSNP
rs979828846 1027 dbSNP
rs948608275 1028 dbSNP
rs1249017913 1030 dbSNP
rs1341709374 1031 dbSNP
rs563744693 1031 dbSNP
rs1272739920 1032 dbSNP
rs539018566 1034 dbSNP
rs145299086 1035 dbSNP
rs992650729 1037 dbSNP
rs1279924459 1038 dbSNP
rs950696527 1040 dbSNP
rs1355958894 1047 dbSNP
rs762978 1057 dbSNP
rs1235290724 1059 dbSNP
rs534067265 1066 dbSNP
rs968260873 1076 dbSNP
rs1022855784 1081 dbSNP
rs1009849999 1085 dbSNP
rs1186809982 1089 dbSNP
rs1418353238 1094 dbSNP
rs1427531117 1097 dbSNP
rs748702845 1099 dbSNP
rs1375964209 1100 dbSNP
rs568292272 1107 dbSNP
rs1233029911 1113 dbSNP
rs1332259355 1116 dbSNP
rs998178487 1123 dbSNP
rs899801116 1125 dbSNP
rs1397602930 1126 dbSNP
rs548055213 1127 dbSNP
rs1236899996 1131 dbSNP
rs4392353 1140 dbSNP
rs890517499 1141 dbSNP
rs1275887264 1143 dbSNP
rs909060388 1144 dbSNP
rs1049357445 1145 dbSNP
rs139725813 1146 dbSNP
rs1469163325 1148 dbSNP
rs79834698 1153 dbSNP
rs991822272 1157 dbSNP
rs1453720803 1160 dbSNP
rs1170676290 1163 dbSNP
rs1387066964 1170 dbSNP
rs960362750 1175 dbSNP
rs904174055 1176 dbSNP
rs397807771 1182 dbSNP
rs59989372 1182 dbSNP
rs1044035286 1183 dbSNP
rs1304604015 1183 dbSNP
rs926264949 1184 dbSNP
rs980500391 1189 dbSNP
rs550150302 1193 dbSNP
rs533199417 1194 dbSNP
rs1010146223 1196 dbSNP
rs1057372643 1197 dbSNP
rs1205176481 1200 dbSNP
rs1204676686 1201 dbSNP
rs957012031 1202 dbSNP
rs1029927501 1204 dbSNP
rs1463261419 1206 dbSNP
rs779109870 1211 dbSNP
rs998400756 1218 dbSNP
rs929148405 1226 dbSNP
rs1348588670 1234 dbSNP
rs919217775 1236 dbSNP
rs1196510537 1237 dbSNP
rs114796016 1241 dbSNP
rs1246838122 1252 dbSNP
rs1470493870 1259 dbSNP
rs5766149 1264 dbSNP
rs910566507 1265 dbSNP
rs1005665202 1268 dbSNP
rs527956605 1269 dbSNP
rs1362121805 1274 dbSNP
rs1298397907 1280 dbSNP
rs1021605846 1281 dbSNP
rs1399650626 1288 dbSNP
rs1287154026 1292 dbSNP
rs1326375422 1294 dbSNP
rs1234609911 1298 dbSNP
rs56034233 1302 dbSNP
rs542018110 1305 dbSNP
rs929126204 1306 dbSNP
rs747028051 1307 dbSNP
rs1252465298 1308 dbSNP
rs1056325722 1313 dbSNP
rs939240341 1314 dbSNP
rs1476192865 1315 dbSNP
rs956840545 1322 dbSNP
rs369159266 1326 dbSNP
rs980825178 1327 dbSNP
rs558893809 1328 dbSNP
rs1397747782 1330 dbSNP
rs1409604894 1332 dbSNP
rs1306657337 1336 dbSNP
rs6007364 1338 dbSNP
rs987873432 1339 dbSNP
rs556033431 1341 dbSNP
rs1320718543 1343 dbSNP
rs750596490 1357 dbSNP
rs1056882313 1358 dbSNP
rs545875732 1359 dbSNP
rs929167403 1360 dbSNP
rs767615187 1366 dbSNP
rs1486636095 1368 dbSNP
rs1188723280 1372 dbSNP
rs919078831 1375 dbSNP
rs1037469037 1376 dbSNP
rs964277199 1377 dbSNP
rs56400017 1378 dbSNP
rs375267128 1388 dbSNP
rs751501355 1390 dbSNP
rs553783057 1392 dbSNP
rs569539921 1393 dbSNP
rs994237857 1394 dbSNP
rs1227342042 1395 dbSNP
rs1295196182 1397 dbSNP
rs956744848 1399 dbSNP
rs568324835 1401 dbSNP
rs1255350042 1407 dbSNP
rs757040552 1412 dbSNP
rs372407178 1413 dbSNP
rs1262648773 1415 dbSNP
rs969635052 1420 dbSNP
rs1187040980 1421 dbSNP
rs1455080145 1424 dbSNP
rs547825275 1425 dbSNP
rs905114734 1425 dbSNP
rs1163361430 1428 dbSNP
rs368684706 1430 dbSNP
rs1013038961 1434 dbSNP
rs1388893077 1436 dbSNP
rs762726585 1439 dbSNP
rs537595311 1448 dbSNP
rs895468547 1449 dbSNP
rs145730351 1456 dbSNP
rs149771250 1458 dbSNP
rs539529728 1459 dbSNP
rs935039536 1460 dbSNP
rs922795975 1466 dbSNP
rs976901104 1469 dbSNP
rs376612588 1470 dbSNP
rs1207132876 1471 dbSNP
rs1211692635 1475 dbSNP
rs1037501720 1477 dbSNP
rs1018936377 1482 dbSNP
rs984357800 1488 dbSNP
rs186043629 1490 dbSNP
rs1025612613 1491 dbSNP
rs371460941 1496 dbSNP
rs895884654 1497 dbSNP
rs1034854285 1503 dbSNP
rs1337100391 1510 dbSNP
rs1421437720 1511 dbSNP
rs1160640971 1512 dbSNP
rs1003321752 1527 dbSNP
rs1412155690 1538 dbSNP
rs1276225932 1542 dbSNP
rs1441053641 1546 dbSNP
rs905000080 1558 dbSNP
rs1396258300 1572 dbSNP
rs12106501 1575 dbSNP
rs988114178 1578 dbSNP
rs935403126 1593 dbSNP
rs547358550 1594 dbSNP
rs1328485880 1601 dbSNP
rs759288969 1604 dbSNP
rs893477186 1606 dbSNP
rs758499398 1607 dbSNP
rs935093411 1611 dbSNP
rs1221255488 1613 dbSNP
rs527988059 1616 dbSNP
rs922345034 1623 dbSNP
rs1041270074 1633 dbSNP
rs1035380717 1635 dbSNP
rs942855637 1637 dbSNP
rs182555715 1646 dbSNP
rs1015963060 1647 dbSNP
rs984789970 1648 dbSNP
rs139808634 1649 dbSNP
rs1463333379 1653 dbSNP
rs933268193 1654 dbSNP
rs776388391 1656 dbSNP
rs1393287197 1663 dbSNP
rs1349819708 1685 dbSNP
rs901716862 1688 dbSNP
rs918604670 1700 dbSNP
rs972704681 1702 dbSNP
rs960147433 1703 dbSNP
rs1035743945 1704 dbSNP
rs1001534569 1705 dbSNP
rs1206342496 1706 dbSNP
rs969645751 1708 dbSNP
rs1023438788 1714 dbSNP
rs916769898 1715 dbSNP
rs1011269101 1724 dbSNP
rs992712303 1724 dbSNP
rs1203614888 1733 dbSNP
rs893706605 1741 dbSNP
rs1472918063 1745 dbSNP
rs752990880 1749 dbSNP
rs960990644 1754 dbSNP
rs879240066 1756 dbSNP
rs1025818056 1762 dbSNP
rs1052570708 1763 dbSNP
rs999184369 1764 dbSNP
rs900806859 1771 dbSNP
rs1369840374 1782 dbSNP
rs1427794118 1791 dbSNP
rs531853206 1799 dbSNP
rs1040820798 1801 dbSNP
rs1447410509 1803 dbSNP
rs1282595242 1808 dbSNP
rs1229562649 1810 dbSNP
rs1346535517 1810 dbSNP
rs1364394275 1810 dbSNP
rs1340645691 1817 dbSNP
rs942405908 1820 dbSNP
rs1279954067 1821 dbSNP
rs911405970 1824 dbSNP
rs1048534707 1825 dbSNP
rs1298076972 1827 dbSNP
rs1440505434 1829 dbSNP
rs1028826074 1834 dbSNP
rs1450985627 1848 dbSNP
rs997722416 1851 dbSNP
rs1361214480 1853 dbSNP
rs563084163 1860 dbSNP
rs931594185 1870 dbSNP
rs150637729 1871 dbSNP
rs972923720 1875 dbSNP
rs999552244 1879 dbSNP
rs1373868240 1886 dbSNP
rs576987032 1887 dbSNP
rs1332324856 1889 dbSNP
rs960032677 1894 dbSNP
rs1043720167 1896 dbSNP
rs928615781 1897 dbSNP
rs1320303563 1898 dbSNP
rs142829843 1899 dbSNP
rs1236973150 1906 dbSNP
rs535941961 1906 dbSNP
rs770610734 1908 dbSNP
rs1344959017 1909 dbSNP
rs1218097758 1912 dbSNP
rs970155045 1913 dbSNP
rs1465966010 1920 dbSNP
rs190286580 1921 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acaUGUCGUCCGUGUCUGUCc 5'
             | || |||   ||: || 
Target 5' aggAGAGGAGGG--AGGAAGa 3'
1 - 19
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000403565.1 | 3UTR | AGGAGAGGAGGGAGGAAGAGCUGGGCGAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-3120-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT096972 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT442624 LOX lysyl oxidase 2 2
MIRT473438 MDM4 MDM4, p53 regulator 2 2
MIRT490011 KIFC2 kinesin family member C2 2 2
MIRT496449 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496752 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT497721 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT498287 PADI3 peptidyl arginine deiminase 3 2 2
MIRT503195 ACVR1B activin A receptor type 1B 2 4
MIRT504760 TEP1 telomerase associated protein 1 2 4
MIRT517810 UGDH UDP-glucose 6-dehydrogenase 2 6
MIRT519686 ZNF622 zinc finger protein 622 2 4
MIRT520263 URGCP upregulator of cell proliferation 2 2
MIRT523051 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT525601 OLR1 oxidized low density lipoprotein receptor 1 2 4
MIRT526995 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT528699 TRAF3IP2 TRAF3 interacting protein 2 2 4
MIRT533142 WNT10A Wnt family member 10A 2 2
MIRT537618 ERI1 exoribonuclease 1 2 2
MIRT539707 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT539752 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT539808 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT539941 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT540424 FAM83F family with sequence similarity 83 member F 2 2
MIRT540509 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT540720 GUF1 GUF1 homolog, GTPase 2 2
MIRT541630 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT542286 POLR3K RNA polymerase III subunit K 2 2
MIRT542456 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT542550 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT542771 PPAP2B phospholipid phosphatase 3 2 2
MIRT550085 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT551458 CARKD NAD(P)HX dehydratase 2 2
MIRT555622 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT569136 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT572328 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT574607 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT575583 Mcm8 minichromosome maintenance 8 homologous recombination repair factor 2 4
MIRT576125 Hrk harakiri, BCL2 interacting protein (contains only BH3 domain) 2 5
MIRT576657 Fam216a family with sequence similarity 216, member A 2 2
MIRT607222 ACSM2A acyl-CoA synthetase medium chain family member 2A 2 4
MIRT607292 CD300E CD300e molecule 2 6
MIRT607746 ANGPT4 angiopoietin 4 2 2
MIRT607905 SPRYD4 SPRY domain containing 4 2 2
MIRT608159 HRK harakiri, BCL2 interacting protein 2 7
MIRT608657 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT609115 ZNF703 zinc finger protein 703 2 6
MIRT610231 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT610870 NUDCD3 NudC domain containing 3 2 2
MIRT611217 MC2R melanocortin 2 receptor 2 2
MIRT614858 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT616966 LMX1A LIM homeobox transcription factor 1 alpha 2 2
MIRT617258 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT618009 SLC9A3R2 SLC9A3 regulator 2 2 2
MIRT619067 BSND barttin CLCNK type accessory beta subunit 2 4
MIRT619295 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619348 GINM1 glycoprotein integral membrane 1 2 2
MIRT619362 CFHR5 complement factor H related 5 2 2
MIRT619541 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT619782 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT619994 NPAP1 nuclear pore associated protein 1 2 2
MIRT621030 CDC14B cell division cycle 14B 2 2
MIRT622033 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT622728 PITPNM3 PITPNM family member 3 2 2
MIRT623144 NAV2 neuron navigator 2 2 2
MIRT623600 IPO9 importin 9 2 2
MIRT624608 B3GALT5 beta-1,3-galactosyltransferase 5 2 2
MIRT624905 CTCFL CCCTC-binding factor like 2 2
MIRT625030 SPC24 SPC24, NDC80 kinetochore complex component 2 2
MIRT625688 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 5
MIRT626531 EMCN endomucin 2 2
MIRT627204 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT628033 LSAMP limbic system-associated membrane protein 2 2
MIRT628203 FREM2 FRAS1 related extracellular matrix protein 2 2 2
MIRT631012 LINS lines homolog 1 2 2
MIRT633195 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT633890 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT634023 MOB4 MOB family member 4, phocein 2 2
MIRT634416 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT636866 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT642527 ANKRD9 ankyrin repeat domain 9 2 2
MIRT645408 FAM110A family with sequence similarity 110 member A 2 2
MIRT645635 SYTL4 synaptotagmin like 4 2 2
MIRT646013 TNFAIP8L2 TNF alpha induced protein 8 like 2 2 2
MIRT646686 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT652838 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT655156 PHF21B PHD finger protein 21B 2 2
MIRT658491 EXOC7 exocyst complex component 7 2 2
MIRT659398 CORO2A coronin 2A 2 2
MIRT666825 PRCP prolylcarboxypeptidase 2 2
MIRT666866 POU2F2 POU class 2 homeobox 2 2 2
MIRT668224 GABRA1 gamma-aminobutyric acid type A receptor alpha1 subunit 2 2
MIRT673288 PDE3A phosphodiesterase 3A 2 2
MIRT673878 KLF2 Kruppel like factor 2 2 2
MIRT681721 KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 2 2
MIRT682406 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT684109 MCM10 minichromosome maintenance 10 replication initiation factor 2 2
MIRT684423 TUFT1 tuftelin 1 2 2
MIRT684684 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT686638 TMEM184C transmembrane protein 184C 2 2
MIRT689457 NXN nucleoredoxin 2 2
MIRT689627 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT690773 PLA2G2C phospholipase A2 group IIC 2 2
MIRT690822 SGSM2 small G protein signaling modulator 2 2 2
MIRT693669 MXRA7 matrix remodeling associated 7 2 2
MIRT695553 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT695872 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT698160 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT699933 RUFY2 RUN and FYVE domain containing 2 2 2
MIRT708639 UBE2W ubiquitin conjugating enzyme E2 W 2 2
MIRT710816 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT711242 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT711542 MSH3 mutS homolog 3 2 2
MIRT711749 DTX1 deltex E3 ubiquitin ligase 1 2 2
MIRT712303 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT712922 RPF2 ribosome production factor 2 homolog 2 2
MIRT714027 SYDE2 synapse defective Rho GTPase homolog 2 2 2
MIRT714768 TERF1 telomeric repeat binding factor 1 2 2
MIRT714844 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715223 NPVF neuropeptide VF precursor 2 2
MIRT716110 GMPS guanine monophosphate synthase 2 2
MIRT716174 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT716383 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT716527 KSR2 kinase suppressor of ras 2 2 2
MIRT716962 P2RY6 pyrimidinergic receptor P2Y6 2 2
MIRT717605 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717696 PTGS1 prostaglandin-endoperoxide synthase 1 2 2
MIRT721360 ENTHD1 ENTH domain containing 1 2 2
MIRT721381 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT721935 RASSF2 Ras association domain family member 2 2 2
MIRT722094 SUSD1 sushi domain containing 1 2 2
MIRT722837 C17orf102 chromosome 17 open reading frame 102 2 2
MIRT722990 TOR1A torsin family 1 member A 2 2
MIRT724174 ABCF2 ATP binding cassette subfamily F member 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3120-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-3120-5p Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil sensitive tissue (myasthenia gravis)
hsa-miR-3120-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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