miRTarBase - #MIRT655948


—
pre-miRNA Information
pre-miRNA hsa-mir-378f   
Genomic Coordinates chr1: 23929070 - 23929147
Description Homo sapiens miR-378f stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-378f
Sequence 52| ACUGGACUUGGAGCCAGAAG |71
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 18 1 + 23929138 29233923 MiREDiBase
A-to-I 19 1 + 23929139 29233923 MiREDiBase
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NDST1   
Synonyms HSST, MRT46, NST1
Description N-deacetylase and N-sulfotransferase 1
Transcript NM_001543   
Expression
Putative miRNA Targets on NDST1
3'UTR of NDST1
(miRNA target sites are highlighted)		 
>NDST1|NM_001543|3'UTR
   1 CCGTGGCCACCACAGCCAGACTGAACGTTTGTGAAAGCTGGGACATCCCACCACACGCTGAGCCAGACCTGCAGAGTGGG
  81 AAGCTGGACCAGGGCAGCTGCGCACTTATGAGCAATACTCTGTGGAGGTCTGGTGGGGCTGGGGGAGCACCCAGGCGGAT
 161 CTGCAAGCACCTCGGAGCACCCACCGCTGGGTCTGCGGCCTAAGGGACCTCCCTCGCCAGCAGAGGTCCATTCCGTTCCC
 241 AGCTGCTCCTGGGGAGGCCGCTTCCTGGTAGGAGGGAGTCCACGAGACTCTTTTCTGTCCCTCACTGTGTTCCGCCGACT
 321 GTCCCCTCTCGTCACCCATCACTCCCTGCTTCCGCAGGGCGCCCCTCAGTATTCGCTGCCATATGTCCCTGTCCTCCAGG
 401 CTGTAGGGGAGGAGAGCCTGGCCGGGGGAGACAGACTGGACATTTCCCTGTTTCGAGCCAGGCTCTTCCAAGGGGCCAGC
 481 TGGGTCCCCGGAGTCAGTCCTAGGCTGGATGGGAGGGTGGCCCCCTCAAGAGGACTCCCAGCCTCCACATCTGGTTCCTA
 561 CCTTCACATCTCACCCTCCCGTTCTGGGGAAGAATTTCTGGTTCCTACAGTATCCACTCCATCCTCAAGGCTTCCCGCAG
 641 GGCCTTGGGGCACTGCCTTGCCATCGGGCCCAGTTCTCCGGGCCCCACCTGCACCCCTTTCTTCCCCCTGGGATATGATG
 721 TGTGGTGTTTCCTGTGGTAAAAGACTGAGGCAGGCCAGGGGTCTGCCAGTAACATGTTCCCATGTACAGACACGGTCCCC
 801 ACACCCTCCCAGCCTCAGGCCCAGGCAGACATGGGCGAGCTGGTGAGACTGCCAGCCACGGCTTTGCTTAGCCACCTGTG
 881 GCCGAGGGCTCTCAGAGACCCCCTTAACCTCCCAAATACTAAGAAGCTAAAATATTTTAATATTTTGTTTTTTTTTTTCT
 961 TGGTGCCAGAGTTTATACCCTGGGTGCTGGGGTCGCACTGTGTTATATATATATATATATATATATAATGTGTATATATA
1041 TATATTCTATTTTTTTTGGTTGGGTTCGTTTTTAATTCAGTCCTACAAAATGGTGGTAAGCCCCAGTCTCAGGGGTCACC
1121 CTGTCTTAGAGCTAGAGATGAGGTGGCAGGGAGGGAGGCTGTGTCCTCAGTGGCCTGGGGCTGAGCAGACCTTAGGAAGG
1201 GGCCCTCCCCAGTGCCGTGGCTGCTCTGGGGCTACCCCAGGTGAACAGAGGTGGTGAGATGCGCAGGGAAGACCAGCTCT
1281 CTCCAGGACATCGGGCTGCGTGAAGTCCAGTGACCCTGAGGGGATTTTGGCCAAAGGAAACAGCCAGGGCTGGGCTAGGA
1361 GAGCTGGGGTCAAAAGCTGCCCCACCCACTCTCCCTCACATGGTGCTAGGCTGGGAGCTGCCCTGAGAGCTGGGATGCCC
1441 ACCAAGGCCCACAGAACTGTCTCCAGGCCCTTGTAGACAGTGGGATCTCTGGGCTGATTTCTGGTTGGGGTCTGCTCCTA
1521 CCCCACCCCATTTAACAATGTGAAGTGACTGAGGCTGGGGTGCCTCTCCCTGGCCCCCTCCAACTGCCAAATTCTGCTTC
1601 CCTCTGAACCCCAGGAAATACTTTCTGGAGAGGCTTGTCTTGTTCAGAAGACTCTAGCATCTTGGGGCTGGAAGGTCCTT
1681 TGACGGGTATGAAACAGGTCCAGAAAGGGGAGGTGGCCTGCTTGGCCGACGTCATGGAGCCAGCTGGGAGCAGGGCTGAG
1761 CGTTGAACCCGAGGCTCCCGGTTCCAAGTCCCATCGTGCTCCTCTTCCAATGCCACACTGCCTCTGAGCCCATCCTTGGG
1841 ACCCTACTCTGTGCCAGGTTCCTGTCCCTTCCTCCGTCACAGCATGGTCATTCCAGGATATGGGGACAAACCACTCCTTC
1921 CCAGCCAGGGTGCCTTTGAGCCTTCTCATTCCGAGGTCTGCGTTTGCATCCCTGTCGTGTTCTCCCTCGAGGGGTCCTTC
2001 CCCAGCCTGTGGGGGCCTGGGTCTGTTCTGAGCTGATTCCCTTTTCTCCAGTTCTCTGCTGGGATGAAGAAAGTTGGACA
2081 CTCAGTGGGACCAGCTGCAGGTGGTTTCACTGTGTACACAGCAGTGTCCCCATCATGCCTCTCAATGGGGCCTGCAAGCC
2161 TGGGAACTTGGGCATCGTTGGGCCAGCAGGATGAGCAGCAAAGGGTCTGAGGACAGGGTGGCATGTCTGCTTGTGTGCTC
2241 ATGAAGACATGCCCACGCCATGGAGCCAGGGGCTTATAGAGAGGGGCAGTGACTTCCAGAGTCCCATCCGTCAGTGAGGG
2321 GACTGGGCTGCGGGATGGGTGAGGATCTTACAGCTCCCAGGTTCGGAAATCTACCCTCTAGGCCTGGAGGCCTCTCTCGC
2401 AGAGCATGGAAGGCAGGAGAGGTGGGCTGGCCTAGGGCAGGAGCTCCACTTCTCTCTGCCTCTGGCTATGGGAAGGAGCA
2481 GGCGGTTGGAAATCCTGTGACAGCAGAGATCTTCTGGATTTTTGCCTGGACCCTTCTGCAAGCCTGGAGACTGGACCTGC
2561 CACATGTTCCAAGTCTGTCTGCCTAGGTCACTGCTGCCACTTCTCCTCCCACTAACAGACCTTTCTTGAAGACCCACTAG
2641 GTCCAGACACTGCCGGGACTTGCAGGTATGGGGGGTAGAAGGAGAGGCAGATAAGCTGCCTGGGGGGCTGTTAGCTAATG
2721 GGTACAAGGACACCCCCTCCCGAGAAGAGAAGCCACAGATGAGTGGGCCAGCGAGGCCAGTCTTCAATGTCCACTAATTC
2801 ACTCTAAGCATTTGGCCAAAAAAAGGAGAGAGAAATAACTGAAATTGTTCAGGTGGCTCCATCGTCTATTCTGTGGTCCC
2881 CTCCATGAGCCTTTGCCCCAGGGTGGGTGCAGGTGCGAGTGTCACCTGCAGCTGCCTCAGTCATTCAGAGTTCCAGAGCC
2961 TTCTGTGGTGGAGCATCCTGCTGCTTGGAGGATGAGTCTGAAGTTTAAAAATGGGCCTTTTCTGAGCCCCCCTGATGAGC
3041 AGTCAGTGCTTCTGGGCCCAGCTAAGGAAGCCATCTGTTCCCAGCAGAGGAGAGCTGCTGCGCTGACCTGCAGAGGTTGG
3121 TGGTCCCAGCACAGAGCTGTGCCCATGGGCTTGTTAGTGGGAAAAGCAAATACAACAATGTTTTACCAAACATTTAATTA
3201 TGAATGCCCACTCCCCAGCATCTAGATCTAAAATTATTAACATTTTGCCACATTCTTTTTCTCTCTCTGTGTATGTATAT
3281 GTTTTCTCTGTCCTAATTTAAAAGTACATTGCAAACATCATGAAACTTGATCCCTGAAAGCTTCAGCCTGCATCTCCTAA
3361 GAGTTAGGGCATTGTCCTACACATTGGCCCAGTATCACAGCCAAGACGAGAAGTCATTTCCCAGCGATGTCTGCTATCTA
3441 ATCTGTATTCAAATCCCCCCAATTGTCTCCCAGGTAACTTATGTGTCTGGTTTTGGAATCAGCATCCAGTCACGGTGCAC
3521 ACATTGCATTTTCTAACTATGTTTTTAAAACCTCTTTGAATGCTGAAAGGTCTTCCCTCAGCTCACTTTGAGTTTTTAAA
3601 TGACATTGTTTTTGAGGCCCTAGGCCTGCTGTCTTTTTGAAGCCCCACATTCTGAATTTGTCAGATTGTTTGCTCATGGT
3681 GTCGCATAACCACTTCTTCTATCCCCTGTACTTTCAAGGATAATTTAGGCTACATGAGATTTTGCCTTTTGTGCTGACTT
3761 GACAGCTTCACTTCTGCCTAAGATGCGCCTCCACTGTCACCTGTACCAAGTGCCAAAACAGCAGAGGGGCCAGTTAGAGC
3841 AAGAGCTCTGGGGGGGCCGGAAAGTCTCCCTGGAGAAGGCCGTAATATCTGGGCCTTGGAAGGAAGGACACAGGGCTCTG
3921 GAAGGAGGAGGCTGCATGCCTGAAGGCTGGGCCTTCGACCCTGGGGATGGGCCACAGGGCACCAAACACATCATATGTCT
4001 CTCTCTTTCTATTTTGGGGTCCCAGGGTTTTCATTTCCTGGAGACCCGTGGTCTGTGTGCACTGGAGCAGAGCCAGGCTC
4081 TCAGTTGCAGCAGGGAAAAGCCTACATGGGGAACTGCCTCCCGCAAGCTGTGGTGTGAGAAGAGCCCTGGCTGGCAGCAG
4161 GAGCTGTGAAGTTTCATCCCAGCCGGGTGCATTTAGTAGCTGCCTGACCATCTTCCTCCCAGGCCCTCAGTTTCTTCATC
4241 TGTAGAATGAGCAGATAGGGGCCACAGCAGGGATTTTCACACATCAAAGGAGGCAGCCTCTGCTCTAGTTGATGTGAGGA
4321 TGAGGGGGCGGCCTAGACCCCCTGCTGCCCAGGCCGTTGAGGCAACACTGGGTTCCTGGCTTGACAGCTGTGGGCTGGCT
4401 GCCCTTGCCAGCTCAGACGGCTGGCGAGTTTTCAGCTTCCCTAAGGGACTGGCATAGGGTTTTGTGGGGTCAATGCCAGG
4481 AACCTGGGGGAAACTGGATGCGTTTTATCCTAAGAAGTTCATCCCTCCTGCTCTTACTGTTTCCGGCCCTGGAGGAGAAT
4561 GAGGGAGGAGAGGGTTTTCTATGACTGTGTTAGCTTTTATTATTAGCAAGAGGGCTCCTTTTGTAATTTGTGCATGAAAT
4641 TCATGTCATTTCCTGGGAGAGGAGAGGGCCGACTGGAGAGGGTGGGGGGCACACTGGGGAAGCAGGCAGAGGTTTCCTTC
4721 CCTTGTAGGGGGGTGGGGAGAGTGGGGAGAGGGGGTGCTATCCAGTTCGCCTGATGAGGGCTCTCGAACCAGCCGTTTTG
4801 GGTTGTGTTAAAGGTGAGACCTTCCTCCATTAATGTACAATCTCGAACTAACTGCTAATAAAGTGGGGTTCTGTTTGTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gaAGACCGAGG---UUCAGGUCa 5'
            || |||| |   |||||||| 
Target 5' caTCGGGCTGCGTGAAGTCCAGt 3'
 1289 - 1311 162.00 -20.50
2 
miRNA  3' gaagaccGAGGUUCAGGUCa 5'
                 | |:|:|||||| 
Target 5' gaagaccCACTAGGTCCAGa 3'
 2628 - 2647 137.00 -14.80
3 
miRNA  3' gaagaccgagGUUCAGGUCa 5'
                    ||:|||||| 
Target 5' gggtatgaaaCAGGTCCAGa 3'
 1685 - 1704 134.00 -14.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30525275 3 COSMIC
COSN30115625 16 COSMIC
COSN26986167 28 COSMIC
COSN19624614 41 COSMIC
COSN32074474 47 COSMIC
COSN30503169 58 COSMIC
COSN30506546 60 COSMIC
COSN30514974 94 COSMIC
COSN14149375 102 COSMIC
COSN28794030 103 COSMIC
COSN30501391 146 COSMIC
COSN14149377 157 COSMIC
COSN30177743 172 COSMIC
COSN30534112 207 COSMIC
COSN26636082 246 COSMIC
COSN31533804 255 COSMIC
COSN24300942 425 COSMIC
COSN31593327 444 COSMIC
COSN25210736 608 COSMIC
COSN6867640 647 COSMIC
COSN27225957 898 COSMIC
COSN30176538 911 COSMIC
COSN28665397 984 COSMIC
COSN32062188 1028 COSMIC
COSN30538678 1068 COSMIC
COSN31563732 1237 COSMIC
COSN21399486 1295 COSMIC
COSN7880385 1335 COSMIC
COSN26637420 1344 COSMIC
COSN26576766 1350 COSMIC
COSN5592055 1491 COSMIC
COSN31577466 1615 COSMIC
COSN31594750 1680 COSMIC
COSN31481436 1686 COSMIC
COSN31485698 1729 COSMIC
COSN28778383 1735 COSMIC
COSN31523037 1902 COSMIC
COSN1309482 1904 COSMIC
COSN28806764 2051 COSMIC
COSN31597369 2099 COSMIC
COSN1309483 2151 COSMIC
COSN21856727 2177 COSMIC
COSN21760070 2485 COSMIC
COSN15192199 2759 COSMIC
COSN8623240 3046 COSMIC
COSN7880386 3229 COSMIC
COSN22694601 3954 COSMIC
COSN24908756 4008 COSMIC
COSN2076596 4048 COSMIC
COSN26646834 4051 COSMIC
COSN2076597 4287 COSMIC
COSN26829267 4363 COSMIC
COSN26855203 4364 COSMIC
COSN31591708 4453 COSMIC
COSN31514948 4503 COSMIC
COSN26563160 4531 COSMIC
COSN20102061 4603 COSMIC
COSN8492087 4666 COSMIC
COSN31582618 4769 COSMIC
COSN26573228 4783 COSMIC
COSN28762663 4846 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs748839539 2 dbSNP
rs770646949 3 dbSNP
rs773915585 4 dbSNP
rs773712206 15 dbSNP
rs1435313517 19 dbSNP
rs934536704 20 dbSNP
rs377299451 22 dbSNP
rs771539372 26 dbSNP
rs776074315 27 dbSNP
rs202124867 28 dbSNP
rs1335528565 29 dbSNP
rs1235275495 32 dbSNP
rs1304904353 38 dbSNP
rs1045538 41 dbSNP
rs201134280 43 dbSNP
rs202243367 48 dbSNP
rs1233193790 50 dbSNP
rs372934109 52 dbSNP
rs1182916391 56 dbSNP
rs567531428 57 dbSNP
rs369331014 58 dbSNP
rs756067949 63 dbSNP
rs1158216423 74 dbSNP
rs1402612994 76 dbSNP
rs971258670 77 dbSNP
rs982199694 78 dbSNP
rs1257605271 91 dbSNP
rs1048710233 96 dbSNP
rs888697453 99 dbSNP
rs1004407587 102 dbSNP
rs1045539 103 dbSNP
rs1339182880 112 dbSNP
rs553158799 116 dbSNP
rs1045540 117 dbSNP
rs1315437734 118 dbSNP
rs1045541 124 dbSNP
rs1453756908 125 dbSNP
rs1289609151 129 dbSNP
rs1329813490 139 dbSNP
rs1352937179 140 dbSNP
rs1227080550 142 dbSNP
rs748798537 145 dbSNP
rs942958368 146 dbSNP
rs1202490997 152 dbSNP
rs1185366463 154 dbSNP
rs1237339798 157 dbSNP
rs577675045 157 dbSNP
rs552744364 158 dbSNP
rs1028785927 159 dbSNP
rs1274010416 160 dbSNP
rs1209242371 163 dbSNP
rs771914587 164 dbSNP
rs997704534 171 dbSNP
rs1051524480 174 dbSNP
rs556780048 175 dbSNP
rs1376863898 182 dbSNP
rs1307499727 183 dbSNP
rs575226407 185 dbSNP
rs1404184756 186 dbSNP
rs542412892 186 dbSNP
rs958227562 186 dbSNP
rs1478901434 187 dbSNP
rs1387939535 188 dbSNP
rs185478628 197 dbSNP
rs1425191544 199 dbSNP
rs1424040770 201 dbSNP
rs1023912800 204 dbSNP
rs970573624 214 dbSNP
rs981881292 217 dbSNP
rs113090752 226 dbSNP
rs111972110 234 dbSNP
rs1450156808 235 dbSNP
rs778497952 236 dbSNP
rs951434280 239 dbSNP
rs984120067 245 dbSNP
rs988660118 246 dbSNP
rs1225764765 249 dbSNP
rs189790825 258 dbSNP
rs528711332 260 dbSNP
rs949884538 261 dbSNP
rs1044160681 272 dbSNP
rs1347502221 275 dbSNP
rs1405059871 282 dbSNP
rs747811044 284 dbSNP
rs922818429 285 dbSNP
rs930335032 289 dbSNP
rs1408436080 305 dbSNP
rs1171823503 312 dbSNP
rs1477148767 313 dbSNP
rs1431746443 314 dbSNP
rs540433680 315 dbSNP
rs1488007605 317 dbSNP
rs1045544 329 dbSNP
rs1218544295 331 dbSNP
rs532593446 332 dbSNP
rs182015861 336 dbSNP
rs1267990943 342 dbSNP
rs1453188976 343 dbSNP
rs1320916507 345 dbSNP
rs1284807959 354 dbSNP
rs569236874 355 dbSNP
rs187310844 361 dbSNP
rs1449753213 362 dbSNP
rs192160016 365 dbSNP
rs779122546 375 dbSNP
rs1012606017 376 dbSNP
rs548026599 382 dbSNP
rs566114358 384 dbSNP
rs1276098694 394 dbSNP
rs889850069 395 dbSNP
rs567571569 398 dbSNP
rs1476016284 399 dbSNP
rs1032987634 401 dbSNP
rs1322042080 405 dbSNP
rs1237438021 408 dbSNP
rs1208372581 410 dbSNP
rs1462945242 414 dbSNP
rs956019395 424 dbSNP
rs373393757 425 dbSNP
rs1300127767 429 dbSNP
rs1024610828 434 dbSNP
rs971290800 455 dbSNP
rs765338839 456 dbSNP
rs1362522703 463 dbSNP
rs980338963 464 dbSNP
rs1450117323 475 dbSNP
rs1408012322 476 dbSNP
rs73274417 481 dbSNP
rs1465274374 486 dbSNP
rs775472852 489 dbSNP
rs1172563847 491 dbSNP
rs1410638243 493 dbSNP
rs964091675 494 dbSNP
rs571469977 505 dbSNP
rs907558042 506 dbSNP
rs761227587 508 dbSNP
rs538436154 509 dbSNP
rs1190201124 514 dbSNP
rs866492461 525 dbSNP
rs1249289568 526 dbSNP
rs1245818035 528 dbSNP
rs922879749 529 dbSNP
rs1243680009 530 dbSNP
rs1384960544 539 dbSNP
rs1315450101 545 dbSNP
rs934195989 547 dbSNP
rs1369670446 552 dbSNP
rs1300124988 553 dbSNP
rs977618393 562 dbSNP
rs1037293193 569 dbSNP
rs559029497 576 dbSNP
rs935091731 579 dbSNP
rs1394325844 582 dbSNP
rs1386434219 583 dbSNP
rs1158374722 590 dbSNP
rs1458109223 599 dbSNP
rs1438226813 606 dbSNP
rs1178565931 609 dbSNP
rs934200569 609 dbSNP
rs1053519986 611 dbSNP
rs1245593613 612 dbSNP
rs1050336661 613 dbSNP
rs138351588 637 dbSNP
rs947764909 638 dbSNP
rs1239080527 642 dbSNP
rs1314892931 646 dbSNP
rs1381850164 648 dbSNP
rs535845470 651 dbSNP
rs1308963330 659 dbSNP
rs1392144567 664 dbSNP
rs142640627 666 dbSNP
rs1342314399 667 dbSNP
rs183457404 669 dbSNP
rs1272484325 670 dbSNP
rs1003413104 672 dbSNP
rs891807989 680 dbSNP
rs1010646880 681 dbSNP
rs3733933 689 dbSNP
rs1160340877 692 dbSNP
rs1419284087 695 dbSNP
rs1424061132 710 dbSNP
rs1200643939 719 dbSNP
rs971700386 720 dbSNP
rs764360017 721 dbSNP
rs1490699474 722 dbSNP
rs1269042800 736 dbSNP
rs1215800423 740 dbSNP
rs979986214 741 dbSNP
rs1262246809 742 dbSNP
rs1239530778 744 dbSNP
rs1311784497 749 dbSNP
rs1281618812 750 dbSNP
rs1222534774 751 dbSNP
rs1346216886 756 dbSNP
rs1005315920 762 dbSNP
rs565417079 767 dbSNP
rs577401677 784 dbSNP
rs951835842 792 dbSNP
rs984541275 794 dbSNP
rs544443582 795 dbSNP
rs940371856 800 dbSNP
rs975445721 801 dbSNP
rs1173834083 811 dbSNP
rs1481249976 821 dbSNP
rs976136325 822 dbSNP
rs563019333 828 dbSNP
rs1417781556 832 dbSNP
rs1473202835 837 dbSNP
rs1263802720 844 dbSNP
rs955644941 847 dbSNP
rs539999449 853 dbSNP
rs1261085438 858 dbSNP
rs530172079 860 dbSNP
rs1324587316 861 dbSNP
rs1277621883 865 dbSNP
rs1225365276 869 dbSNP
rs1331688475 872 dbSNP
rs1049986719 874 dbSNP
rs1303678681 876 dbSNP
rs1404560109 883 dbSNP
rs1394366371 885 dbSNP
rs1296931734 890 dbSNP
rs377492523 892 dbSNP
rs1395753023 896 dbSNP
rs1292741004 900 dbSNP
rs1351090284 902 dbSNP
rs1230124916 903 dbSNP
rs1406385934 909 dbSNP
rs1166766694 920 dbSNP
rs548613496 933 dbSNP
rs1286271223 936 dbSNP
rs1203734835 948 dbSNP
rs79051304 948 dbSNP
rs924802141 948 dbSNP
rs77371898 949 dbSNP
rs190283704 950 dbSNP
rs936167163 959 dbSNP
rs1316151786 960 dbSNP
rs1210498093 963 dbSNP
rs1257405918 964 dbSNP
rs374905184 971 dbSNP
rs1482033727 973 dbSNP
rs1194084786 987 dbSNP
rs1341584363 992 dbSNP
rs776746123 995 dbSNP
rs1251895181 996 dbSNP
rs1483696986 999 dbSNP
rs1184936239 1003 dbSNP
rs1357984136 1003 dbSNP
rs1251305049 1004 dbSNP
rs1439814397 1004 dbSNP
rs1453872910 1004 dbSNP
rs371191771 1004 dbSNP
rs1406376266 1006 dbSNP
rs1418887650 1008 dbSNP
rs1294592035 1010 dbSNP
rs1353419451 1013 dbSNP
rs1278213893 1016 dbSNP
rs990698647 1017 dbSNP
rs914999251 1022 dbSNP
rs1328892124 1026 dbSNP
rs936140011 1027 dbSNP
rs947789123 1027 dbSNP
rs55954668 1028 dbSNP
rs1044776737 1030 dbSNP
rs1198697366 1033 dbSNP
rs1471250512 1033 dbSNP
rs927602216 1033 dbSNP
rs1177151403 1035 dbSNP
rs1054504899 1039 dbSNP
rs1379653122 1050 dbSNP
rs1446972211 1059 dbSNP
rs1464718061 1068 dbSNP
rs960853755 1069 dbSNP
rs1371210685 1073 dbSNP
rs748385392 1093 dbSNP
rs1411693425 1096 dbSNP
rs558200092 1102 dbSNP
rs891880130 1105 dbSNP
rs1306129044 1106 dbSNP
rs1372453651 1109 dbSNP
rs1219591246 1113 dbSNP
rs1010259926 1114 dbSNP
rs1303130484 1118 dbSNP
rs1344553177 1121 dbSNP
rs755910742 1132 dbSNP
rs1310135546 1133 dbSNP
rs1233082609 1139 dbSNP
rs146885236 1143 dbSNP
rs907170925 1144 dbSNP
rs1001873818 1148 dbSNP
rs1385868149 1149 dbSNP
rs1034228550 1151 dbSNP
rs951866908 1155 dbSNP
rs1431502982 1162 dbSNP
rs1231688569 1163 dbSNP
rs1006049421 1176 dbSNP
rs1475346213 1179 dbSNP
rs1014720084 1197 dbSNP
rs1038575329 1200 dbSNP
rs1447954128 1202 dbSNP
rs1192192731 1203 dbSNP
rs1262977150 1204 dbSNP
rs1202639118 1209 dbSNP
rs1321027592 1210 dbSNP
rs76457057 1213 dbSNP
rs997335311 1216 dbSNP
rs571438053 1217 dbSNP
rs922948849 1218 dbSNP
rs6863809 1220 dbSNP
rs116054908 1233 dbSNP
rs769647272 1239 dbSNP
rs1168329159 1251 dbSNP
rs1353933815 1256 dbSNP
rs936213486 1257 dbSNP
rs1437094989 1260 dbSNP
rs1295119465 1262 dbSNP
rs537494758 1263 dbSNP
rs568941606 1264 dbSNP
rs1177194065 1271 dbSNP
rs1409458547 1272 dbSNP
rs1417923933 1277 dbSNP
rs1188790600 1279 dbSNP
rs1476067938 1280 dbSNP
rs1242891102 1281 dbSNP
rs1182152873 1285 dbSNP
rs535981066 1287 dbSNP
rs1366848975 1288 dbSNP
rs990368933 1291 dbSNP
rs916062492 1293 dbSNP
rs1271662358 1294 dbSNP
rs554237348 1299 dbSNP
rs778477912 1300 dbSNP
rs572533550 1301 dbSNP
rs1267712668 1314 dbSNP
rs980916757 1322 dbSNP
rs927691651 1324 dbSNP
rs1001509572 1334 dbSNP
rs1441832811 1358 dbSNP
rs939040897 1365 dbSNP
rs1055753538 1367 dbSNP
rs1046675607 1378 dbSNP
rs908476614 1383 dbSNP
rs1410999671 1397 dbSNP
rs1451556711 1398 dbSNP
rs941266007 1399 dbSNP
rs1446831818 1400 dbSNP
rs1184917886 1408 dbSNP
rs1244192717 1413 dbSNP
rs1182080003 1415 dbSNP
rs533528857 1422 dbSNP
rs887690640 1423 dbSNP
rs1418866411 1424 dbSNP
rs1038244694 1430 dbSNP
rs1206037987 1442 dbSNP
rs1405925053 1451 dbSNP
rs1483319452 1452 dbSNP
rs1166873841 1457 dbSNP
rs563195175 1475 dbSNP
rs1014780416 1478 dbSNP
rs961880959 1483 dbSNP
rs1051628316 1489 dbSNP
rs1320905417 1489 dbSNP
rs1371519885 1493 dbSNP
rs1299919009 1495 dbSNP
rs1410516743 1500 dbSNP
rs758064739 1506 dbSNP
rs1301820244 1507 dbSNP
rs1427180682 1518 dbSNP
rs997678207 1519 dbSNP
rs1030050543 1520 dbSNP
rs891192974 1523 dbSNP
rs953200165 1537 dbSNP
rs182489311 1539 dbSNP
rs1472641649 1540 dbSNP
rs1267629674 1541 dbSNP
rs1220156772 1546 dbSNP
rs1490832597 1548 dbSNP
rs369917444 1561 dbSNP
rs762562124 1563 dbSNP
rs370660235 1565 dbSNP
rs1229302465 1569 dbSNP
rs1012225809 1571 dbSNP
rs1281498590 1577 dbSNP
rs139257660 1583 dbSNP
rs575076947 1588 dbSNP
rs913407688 1605 dbSNP
rs970646488 1607 dbSNP
rs946194598 1629 dbSNP
rs1343016259 1633 dbSNP
rs377428080 1634 dbSNP
rs916779314 1638 dbSNP
rs952220672 1643 dbSNP
rs984966312 1646 dbSNP
rs927722931 1648 dbSNP
rs928727539 1649 dbSNP
rs937377399 1653 dbSNP
rs1466460317 1655 dbSNP
rs1055784219 1658 dbSNP
rs1196719642 1660 dbSNP
rs555690803 1671 dbSNP
rs1185669742 1685 dbSNP
rs1241703969 1686 dbSNP
rs1473181985 1687 dbSNP
rs1262315037 1688 dbSNP
rs560548222 1694 dbSNP
rs1323169735 1696 dbSNP
rs941945069 1698 dbSNP
rs1415590691 1703 dbSNP
rs1036240996 1708 dbSNP
rs897663440 1728 dbSNP
rs1332141384 1731 dbSNP
rs941310491 1732 dbSNP
rs1381068737 1735 dbSNP
rs143181608 1735 dbSNP
rs1030536145 1736 dbSNP
rs921161847 1744 dbSNP
rs1404913520 1745 dbSNP
rs888855132 1761 dbSNP
rs1398695932 1762 dbSNP
rs1173542221 1763 dbSNP
rs1317225867 1764 dbSNP
rs1359318904 1767 dbSNP
rs1007206883 1771 dbSNP
rs1310536246 1772 dbSNP
rs1354177891 1779 dbSNP
rs777570030 1780 dbSNP
rs552257008 1781 dbSNP
rs1205587811 1782 dbSNP
rs957675363 1788 dbSNP
rs1222380229 1796 dbSNP
rs143724681 1800 dbSNP
rs1443153520 1807 dbSNP
rs1452372783 1813 dbSNP
rs1020500570 1819 dbSNP
rs1334264323 1825 dbSNP
rs1397462003 1832 dbSNP
rs1402293039 1836 dbSNP
rs1297163222 1837 dbSNP
rs1460352446 1845 dbSNP
rs1053133047 1847 dbSNP
rs1212420140 1850 dbSNP
rs574201066 1850 dbSNP
rs1007885522 1854 dbSNP
rs148109107 1854 dbSNP
rs1443277214 1858 dbSNP
rs1249891105 1859 dbSNP
rs906077081 1860 dbSNP
rs1485325726 1866 dbSNP
rs1003463187 1870 dbSNP
rs1276009145 1872 dbSNP
rs967983385 1877 dbSNP
rs550840199 1884 dbSNP
rs752848320 1888 dbSNP
rs747335748 1889 dbSNP
rs981630327 1896 dbSNP
rs1246521249 1901 dbSNP
rs73274418 1905 dbSNP
rs1389211028 1910 dbSNP
rs960481601 1915 dbSNP
rs982475998 1917 dbSNP
rs1423982128 1925 dbSNP
rs1363480666 1928 dbSNP
rs1164839924 1938 dbSNP
rs1157713865 1939 dbSNP
rs1473213988 1941 dbSNP
rs536014804 1942 dbSNP
rs937422352 1943 dbSNP
rs186771000 1952 dbSNP
rs1473624461 1953 dbSNP
rs115604345 1954 dbSNP
rs973739585 1955 dbSNP
rs921182414 1956 dbSNP
rs1292399650 1957 dbSNP
rs932550850 1962 dbSNP
rs1356563900 1971 dbSNP
rs1278614113 1972 dbSNP
rs986666170 1976 dbSNP
rs941976289 1977 dbSNP
rs541488241 1978 dbSNP
rs897741591 1985 dbSNP
rs1404241605 1989 dbSNP
rs1343577724 1990 dbSNP
rs1325200992 1991 dbSNP
rs751113405 1997 dbSNP
rs934761018 2003 dbSNP
rs141860884 2009 dbSNP
rs893198223 2010 dbSNP
rs1459085601 2020 dbSNP
rs1279335644 2022 dbSNP
rs1412783313 2024 dbSNP
rs1051593179 2033 dbSNP
rs1346054961 2035 dbSNP
rs60359514 2051 dbSNP
rs1249000174 2052 dbSNP
rs1199967394 2055 dbSNP
rs1446763785 2063 dbSNP
rs1282645920 2064 dbSNP
rs1007280362 2065 dbSNP
rs373074093 2097 dbSNP
rs1278406294 2106 dbSNP
rs1032010121 2109 dbSNP
rs1268141119 2110 dbSNP
rs770272314 2120 dbSNP
rs1009179361 2126 dbSNP
rs1365354160 2135 dbSNP
rs775536879 2139 dbSNP
rs967636388 2144 dbSNP
rs1437163792 2146 dbSNP
rs73274419 2147 dbSNP
rs1035881456 2151 dbSNP
rs1437479442 2153 dbSNP
rs1389667376 2158 dbSNP
rs1175754188 2177 dbSNP
rs556813681 2178 dbSNP
rs1427414121 2183 dbSNP
rs1003074333 2197 dbSNP
rs1475413123 2203 dbSNP
rs1478830293 2205 dbSNP
rs1240704766 2208 dbSNP
rs376502805 2214 dbSNP
rs909289854 2218 dbSNP
rs1035841554 2219 dbSNP
rs191191156 2222 dbSNP
rs1202427943 2230 dbSNP
rs1309907986 2241 dbSNP
rs1280213567 2242 dbSNP
rs554326058 2250 dbSNP
rs1429848638 2255 dbSNP
rs768803468 2257 dbSNP
rs1169870113 2258 dbSNP
rs972074238 2261 dbSNP
rs1004976771 2270 dbSNP
rs1450778414 2277 dbSNP
rs13181064 2278 dbSNP
rs1334999907 2286 dbSNP
rs933263298 2289 dbSNP
rs1417996394 2290 dbSNP
rs1170826960 2294 dbSNP
rs1450500992 2302 dbSNP
rs962451118 2308 dbSNP
rs1052090927 2310 dbSNP
rs910386084 2311 dbSNP
rs1482106653 2319 dbSNP
rs1238648321 2322 dbSNP
rs1332069778 2323 dbSNP
rs974153884 2327 dbSNP
rs1437123709 2329 dbSNP
rs760418405 2333 dbSNP
rs1230580875 2351 dbSNP
rs954123038 2352 dbSNP
rs1226808011 2354 dbSNP
rs912455469 2355 dbSNP
rs1370439340 2357 dbSNP
rs1229314439 2365 dbSNP
rs1053502074 2366 dbSNP
rs955876733 2372 dbSNP
rs893554845 2374 dbSNP
rs1009210456 2384 dbSNP
rs1441601556 2387 dbSNP
rs1042042417 2392 dbSNP
rs766162386 2398 dbSNP
rs906169355 2399 dbSNP
rs1337423109 2400 dbSNP
rs988605156 2402 dbSNP
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rs750247871 2443 dbSNP
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rs1370822842 2500 dbSNP
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rs920822140 2965 dbSNP
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rs1156975463 2997 dbSNP
rs35953241 3000 dbSNP
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rs1208818641 3212 dbSNP
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rs920865533 3250 dbSNP
rs139931964 3256 dbSNP
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rs1362927325 3268 dbSNP
rs912048998 3272 dbSNP
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rs58575086 3275 dbSNP
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rs990547551 3288 dbSNP
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rs1168263429 3468 dbSNP
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rs1367333273 3486 dbSNP
rs1010860742 3500 dbSNP
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rs1396263906 3503 dbSNP
rs185357247 3510 dbSNP
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rs999422534 3517 dbSNP
rs548104562 3519 dbSNP
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rs1270160962 3565 dbSNP
rs1240321636 3569 dbSNP
rs1312131823 3570 dbSNP
rs1299593024 3580 dbSNP
rs1221316998 3587 dbSNP
rs1303652759 3587 dbSNP
rs1372246247 3587 dbSNP
rs960533918 3588 dbSNP
rs1385788983 3589 dbSNP
rs1290126596 3598 dbSNP
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rs184087811 3634 dbSNP
rs1249904949 3638 dbSNP
rs1205827592 3648 dbSNP
rs1027686500 3650 dbSNP
rs550677471 3657 dbSNP
rs1212912641 3666 dbSNP
rs1349046836 3674 dbSNP
rs1297398112 3677 dbSNP
rs368457283 3684 dbSNP
rs77610720 3685 dbSNP
rs1184790523 3693 dbSNP
rs780495341 3696 dbSNP
rs1418799617 3704 dbSNP
rs148427783 3716 dbSNP
rs1436568723 3730 dbSNP
rs1166895120 3734 dbSNP
rs73274421 3735 dbSNP
rs1167731834 3755 dbSNP
rs1428022062 3757 dbSNP
rs1375030009 3760 dbSNP
rs1194232116 3764 dbSNP
rs1423290038 3766 dbSNP
rs967176427 3775 dbSNP
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rs188576289 3788 dbSNP
rs1346527691 3790 dbSNP
rs545949376 3792 dbSNP
rs117315480 3795 dbSNP
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rs1252678222 3801 dbSNP
rs1227757522 3804 dbSNP
rs1320585579 3809 dbSNP
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rs1287765103 3816 dbSNP
rs1044130896 3820 dbSNP
rs1356046067 3830 dbSNP
rs902490627 3832 dbSNP
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rs937011217 3850 dbSNP
rs999854172 3852 dbSNP
rs1034908512 3853 dbSNP
rs537306738 3858 dbSNP
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rs574032934 3860 dbSNP
rs1023411364 3871 dbSNP
rs962440078 3879 dbSNP
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rs994653072 3882 dbSNP
rs1334978193 3883 dbSNP
rs1287619421 3886 dbSNP
rs1226574007 3888 dbSNP
rs1337298787 3902 dbSNP
rs973819551 3911 dbSNP
rs1049632709 3912 dbSNP
rs1318953512 3912 dbSNP
rs1388879726 3913 dbSNP
rs1213805555 3915 dbSNP
rs1327946376 3916 dbSNP
rs1241574441 3920 dbSNP
rs1157581431 3922 dbSNP
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rs889165896 3931 dbSNP
rs528870367 3937 dbSNP
rs548140766 3938 dbSNP
rs773331061 3943 dbSNP
rs116298351 3947 dbSNP
rs377043979 3957 dbSNP
rs769682367 3958 dbSNP
rs902134958 3975 dbSNP
rs539667316 3991 dbSNP
rs1474768264 4002 dbSNP
rs1468538901 4004 dbSNP
rs1267005920 4007 dbSNP
rs944901184 4012 dbSNP
rs1039165926 4013 dbSNP
rs551904095 4020 dbSNP
rs922076633 4022 dbSNP
rs1352752905 4035 dbSNP
rs754286277 4045 dbSNP
rs73799056 4048 dbSNP
rs1329180302 4049 dbSNP
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rs371377064 4061 dbSNP
rs762970504 4063 dbSNP
rs1318629604 4066 dbSNP
rs1402912691 4094 dbSNP
rs764193027 4102 dbSNP
rs773842848 4103 dbSNP
rs1477228883 4105 dbSNP
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rs1375553209 4115 dbSNP
rs968635036 4123 dbSNP
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rs368116051 4278 dbSNP
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rs62383061 4294 dbSNP
rs553628133 4325 dbSNP
rs951161026 4330 dbSNP
rs542588800 4331 dbSNP
rs796910141 4336 dbSNP
rs1211362352 4340 dbSNP
rs180937719 4344 dbSNP
rs369230095 4345 dbSNP
rs1040420487 4349 dbSNP
rs1216620921 4356 dbSNP
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rs1409571930 4372 dbSNP
rs545686051 4379 dbSNP
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rs1231550315 4436 dbSNP
rs1023977840 4443 dbSNP
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rs1440413155 4458 dbSNP
rs1308823386 4465 dbSNP
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rs1324862662 4486 dbSNP
rs1044963509 4502 dbSNP
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rs1008364916 4569 dbSNP
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rs999922920 4735 dbSNP
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rs1035063866 4744 dbSNP
rs1217855395 4750 dbSNP
rs1255803595 4751 dbSNP
rs34851576 4751 dbSNP
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rs368119366 4756 dbSNP
rs1273546496 4765 dbSNP
rs551777095 4769 dbSNP
rs1382644517 4770 dbSNP
rs745653131 4772 dbSNP
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rs1211461628 4780 dbSNP
rs1375907931 4781 dbSNP
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rs1276844672 4791 dbSNP
rs931168937 4795 dbSNP
rs1475141569 4796 dbSNP
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rs1194620710 4802 dbSNP
rs1190745210 4806 dbSNP
rs185934220 4821 dbSNP
rs1250322841 4827 dbSNP
rs886919413 4835 dbSNP
rs1007981890 4841 dbSNP
rs1040738116 4843 dbSNP
rs11994 4846 dbSNP
rs1170477279 4848 dbSNP
rs1333579544 4854 dbSNP
rs1291360763 4858 dbSNP
rs549099795 4868 dbSNP
rs567388325 4869 dbSNP
rs1419063113 4876 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gaagaccgaggUUCA--GGUCa 5'
                     |:||  || | 
Target 5' ---gaaaggggAGGUGGCCUGc 3'
 		1 - 19
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000261797.6 | 3UTR | GAAAGGGGAGGUGGCCUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
27 hsa-miR-378f Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT463100 ZNF609 zinc finger protein 609 2 2
MIRT469371 REST RE1 silencing transcription factor 2 6
MIRT495441 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 2
MIRT513606 VPS37B VPS37B, ESCRT-I subunit 2 2
MIRT520414 TXNL1 thioredoxin like 1 2 4
MIRT525111 PRKD2 protein kinase D2 2 2
MIRT525979 SPA17 sperm autoantigenic protein 17 2 2
MIRT527002 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT529215 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT529835 ARGFX arginine-fifty homeobox 2 2
MIRT532300 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT537577 ESYT2 extended synaptotagmin 2 2 2
MIRT543140 AKT1 AKT serine/threonine kinase 1 2 2
MIRT554924 RAP1B RAP1B, member of RAS oncogene family 2 2
MIRT564970 WTAP WT1 associated protein 2 2
MIRT570115 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT652734 TGFB2 transforming growth factor beta 2 2 2
MIRT655948 NDST1 N-deacetylase and N-sulfotransferase 1 2 2
MIRT655997 MYRF myelin regulatory factor 2 2
MIRT684875 P4HB prolyl 4-hydroxylase subunit beta 2 2
MIRT692969 LGSN lengsin, lens protein with glutamine synthetase domain 2 2
MIRT693737 ACACA acetyl-CoA carboxylase alpha 2 2
MIRT710991 PPARGC1B PPARG coactivator 1 beta 2 2
MIRT712247 RCC2 regulator of chromosome condensation 2 2 2
MIRT718602 DCTPP1 dCTP pyrophosphatase 1 2 2
MIRT723499 WDR33 WD repeat domain 33 2 2
MIRT725448 HIPK3 homeodomain interacting protein kinase 3 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-378f Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-378f Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-378f Doxorubicin 31703 NSC123127 approved sensitive High Triple-Negative Breast Cancer cell line (MDA-MB-231, MDA-MB-468)
hsa-miR-378f Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-378f Erlotinib 176870 NSC718781 approved resistant High Head And Neck Squamous Cell Carcinoma cell line (HN6)
hsa-mir-378f Androstenedione+Anastrozole sensitive cell line (MCF-7)
hsa-miR-378f Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-378f Doxorubicin 31703 NSC123127 approved sensitive cell line (BAS)
hsa-miR-378f Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-378f Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-378f Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)
hsa-miR-378f Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR3)

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